Citrus Sinensis ID: 014655

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MKIMPSLAYPLSSSSSSSFLTLHSYNKILFNNQLIFKSNVLKYENLRYDSISCRHTRTRESNSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFNP
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccEEEEEEEEEEccccccccEEccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccEEEcccccccccccccccccccccccccEEEEcccccEEEcccccEEEEccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHccccccccccHHHHHHHHHccccccccccccccccccEEEEcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHcEEEEEEEcccccHHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEcHHHHHHHcccccccccccHHHHccccEEEEEEEccccccccHHHHHHcHHHHEcEEEEEEEEcccccccHHHcEccccccccccccHHHEccEEEEEEccccccccccccccccEEEEEEcccccEEEEEHEHHEEEcccccccccccccccccccccccccEEEEccccEEEEccccEEEEEccccccEEEEEEccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccEEEEcccccccccccEEEEEccccHHHcHHccccHHHHHHHHHHHcHEEEEEEEcccccHHHHHHHHHHHHHHHcHHHHcccEEEEEEccccccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkimpslayplsssssssfltLHSYNKILFNNQLIFKSNVLKYEnlrydsiscrhtrtresnstspatlvkephkYFDRVLITVrsgdgghgavlrmptqSAVAKShgklakenpwkkssfkrdfdgslilpmgghggdvviyadegkdTLLEFHNKRrynakrggnvdsmgvlssqlrgglaaptlripvplgtvvkhkrgklfsdlahpgdevlvarggrggisllevpENRRKRMTTLTtnimrddtDKVLVLGQHGEEVSLELILRVVADVglvglpnagkSTLLAAIThakpdiadypfttlmpnlgrldgdptlgaekysseatladlpgliegahlgkglgRNFLRHLRRTRLLVHVIDAaaenpvndyrTVKEELRmynpdylerpfivvlnkidlpemyddsssrqgigfnp
Flexible Loop (DISEMBL)
mkimpslayplssssssSFLTLHSYNKILFNNQLIFKSNVLKYENLRYDSiscrhtrtresnstspatlvkephkYFDRVLITVRSGDGGHGAVLRMPTQSAVAKshgklakenpwkkssfkRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRrynakrggnvdsMGVLSSQLRGglaaptlripvplGTVVKHKRGklfsdlahpgdevlvarggrggisllevpenrrKRMTtlttnimrddtDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVhvidaaaenpvndyrtvKEELRMYNPDYLERPFIVVLNKIDLpemyddsssrqgigfnp
Low Complexity Region (SEG)
MKIMPSLAYPLsssssssFLTLHSYNKILFNNQLIFKSNVLKYENLRYDSISCRHTRTRESNSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFlrhlrrtrllvhvIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFNP
Disordered region (IsUnstruct)
******************FLTLHSYNKILFNNQLIFKSNVLKYENLRYDSISCR*****************EPHKYFDRVLITVRSGDGGHGAV*****************************DFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVP*****RMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP****************
Disordered Region (DISOPRED)
*******AYPLSSSSSSSFLTLHSYNKILFNNQLI*********NLRYD************************HKYFDRVLITVRSGDGGHGAVLRMPTQSAV***********PWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYN*********************AAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKR*TTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFNP
Disordered Region (DISEMBL)
*****************SFLTLHSYNKILFNNQLIFKSNVLKYENLRYDSISCRH************TLVKEPHKYFDRVLITVRSGDGGHGAVLRMPT***************PWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY*************
Disordered Region (DISPRO)
*************SSSSSFLTLHSYNKILFNNQLIFKSNVLKYENLRYDSISCRHTRTRESNSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKR******MGVLS******LAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLV*GQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFNP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIMPSLAYPLSSSSSSSFLTLHSYNKILFNNQLIFKSNVLKYENLRYDSISCRHTRTRESNSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
B5YEQ1	435	GTPase obg OS=Dictyoglomu	yes	no	0.662	0.641	0.427	3e-50
Q2JJ90	347	GTPase obg OS=Synechococc	yes	no	0.581	0.706	0.414	1e-49
B8E0B2	434	GTPase obg OS=Dictyoglomu	yes	no	0.662	0.642	0.415	4e-49
Q3AM97	329	GTPase obg OS=Synechococc	yes	no	0.650	0.832	0.395	1e-48
A1SMB4	516	GTPase obg OS=Nocardioide	yes	no	0.572	0.467	0.421	6e-48
A4J7I9	422	GTPase obg OS=Desulfotoma	yes	no	0.691	0.689	0.379	5e-47
Q8RBA5	424	GTPase obg OS=Thermoanaer	yes	no	0.570	0.566	0.413	6e-47
A5IKX2	435	GTPase obg OS=Thermotoga	yes	no	0.667	0.645	0.402	9e-47
B1LA53	435	GTPase obg OS=Thermotoga	yes	no	0.667	0.645	0.402	1e-46
A9AXD9	437	GTPase obg OS=Herpetosiph	yes	no	0.693	0.668	0.384	2e-46

>sp|B5YEQ1|OBG_DICT6 GTPase obg OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=obg PE=3 SV=1

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 144/337 (42%), Positives = 186/337 (55%), Gaps = 58/337 (17%)

Query: 76  YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDF---DGSLILP 132
           + DR  I V++GDGG+G V                         +F+R+     G     
Sbjct: 2   FIDRAKIYVKAGDGGNGCV-------------------------AFRREKFVPRGGPAGG 36

Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVP 192
            GG GGDV+I ADE  DTLL+FH KR Y A+RG      G   +Q   G     L I VP
Sbjct: 37  DGGKGGDVIIEADENLDTLLDFHYKRHYYAERG----EHGKGKNQ--KGKDGEDLIIKVP 90

Query: 193 LGTVV-KHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 251
            GT++   + G+L +DL   G  V+VARGG+GG         R       +T       +
Sbjct: 91  TGTLIFDAETGELIADLVSHGQRVVVARGGKGG---------RGNTHFATSTRQAPYFAE 141

Query: 252 KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 311
           K    G+ GEE  L L L+++ADVGLVGLPNAGKSTLL+ I++A P+IA YPFTT  PNL
Sbjct: 142 K----GEKGEERWLYLELKLLADVGLVGLPNAGKSTLLSKISNANPEIAPYPFTTKTPNL 197

Query: 312 GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA--A 369
           G +        E+     T+AD+PGLIEGAH  KG+G  FLRH+ RT +LV VIDAA   
Sbjct: 198 GVV--------EREDITFTVADIPGLIEGAHENKGMGDEFLRHIERTLVLVFVIDAADLV 249

Query: 370 ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
             P   Y  +K+EL +Y+P  LE+P I+ +NKIDLPE
Sbjct: 250 TPPQKAYEILKKELYLYSPKLLEKPRIIAINKIDLPE 286

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.
Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) (taxid: 309799)

>sp|Q2JJ90|OBG_SYNJB GTPase obg OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=obg PE=3 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/282 (41%), Positives = 161/282 (57%), Gaps = 37/282 (13%)

Query: 140 VVIYADEGKDTLLEFHN----KRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGT 195
           V++ AD G  TLL+F      K  + AK G N           R G +     + VP GT
Sbjct: 45  VILVADPGLQTLLDFRFQPVIKAEHGAKGGPN----------HRSGASGADRLVRVPCGT 94

Query: 196 VV-KHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVL 254
           VV   + G+L  DL   GD++LVARGG+GG+       N  +     T            
Sbjct: 95  VVFNAETGELLGDLVGKGDQLLVARGGKGGLGNAHFLSNHNRAPRQFTK----------- 143

Query: 255 VLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRL 314
             G+ GE V L L L+++A+VG+VGLPNAGKSTL++ ++ A+P IADYPFTTL PNLG +
Sbjct: 144 --GEAGERVRLRLELKLIAEVGIVGLPNAGKSTLISVVSSARPKIADYPFTTLQPNLGVV 201

Query: 315 DGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN 374
                            AD+PGLIEGAHLG GLG  FLRH+ RTR+L+H++D  A +PV 
Sbjct: 202 -------PHPSGDGVVFADIPGLIEGAHLGVGLGHEFLRHVERTRVLIHLVDGTAADPVK 254

Query: 375 DYRTVKEELRMYNPDYLERPFIVVLNKIDL--PEMYDDSSSR 414
           DY+ +++ELR Y    +++P I+VLNKID+  P+   + + R
Sbjct: 255 DYQVIQQELRAYGHGLIDKPQILVLNKIDVLDPQQVAERAQR 296

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

>sp|B8E0B2|OBG_DICTD GTPase obg OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=obg PE=3 SV=1

 Score =  196 bits (497), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 140/337 (41%), Positives = 187/337 (55%), Gaps = 58/337 (17%)

Query: 76  YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD---FDGSLILP 132
           + DR  I V++GDGG+G +                         +F+R+     G     
Sbjct: 2   FIDRAKIYVKAGDGGNGCI-------------------------AFRREKFVPKGGPAGG 36

Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVP 192
            GG GGDV+I ADE  DTLL+FH KR Y A+RG      G   +Q   G     L I VP
Sbjct: 37  DGGKGGDVIIEADENLDTLLDFHYKRHYYAERG----EHGKGKNQ--KGKDGKDLVIKVP 90

Query: 193 LGTVV-KHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 251
           +GT++   + G+L +DL   G  V+VA+GG+GG        N     +T  T    +   
Sbjct: 91  VGTLIFDVETGELLADLVSHGQRVVVAKGGKGGRG------NAHFATSTRQTPYFAEK-- 142

Query: 252 KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 311
                G+ GEE  L L L+++ADVGL+GLPNAGKSTLL+ I++A P+IA YPFTT  PNL
Sbjct: 143 -----GEKGEERWLYLELKLLADVGLLGLPNAGKSTLLSRISNATPEIAPYPFTTKTPNL 197

Query: 312 GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA--A 369
           G +        E+     T+AD+PGLIEGAH  KG+G  FLRH+ RT +LV V+DAA   
Sbjct: 198 GVV--------EREDITFTVADIPGLIEGAHENKGMGDEFLRHIERTSVLVFVLDAADMV 249

Query: 370 ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
             P   Y  +K+EL +Y+P  LE+P I+ +NKIDLPE
Sbjct: 250 NPPQRAYEILKKELYLYSPKLLEKPRIIAINKIDLPE 286

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Dictyoglomus turgidum (strain Z-1310 / DSM 6724) (taxid: 515635)

>sp|Q3AM97|OBG_SYNSC GTPase obg OS=Synechococcus sp. (strain CC9605) GN=obg PE=3 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/339 (39%), Positives = 177/339 (52%), Gaps = 65/339 (19%)

Query: 75  KYFDRVLITVRSGDGGHG--AVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILP 132
           ++ D+  ITVR G GG G  A  R     A   S G      P                 
Sbjct: 2   QFIDQARITVRGGRGGDGIAAFRREKYVPAGGPSGGDGGCGAP----------------- 44

Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNA---KRGGNVDSMGVLSSQLRGGLAAPTLRI 189
                  VV+ AD    TLL+F  KR + A   +RGG     G          +   L I
Sbjct: 45  -------VVLEADSNLQTLLDFKYKRLFAADDGRRGGPNKCTGA---------SGKDLVI 88

Query: 190 PVPLGTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRD 248
            VP GT V+H R G L  DL  PG+ + VA GGRGG+       NR +     T      
Sbjct: 89  KVPCGTEVRHLRTGILLGDLTAPGERLTVAFGGRGGLGNAHYLSNRNRAPEKFTE----- 143

Query: 249 DTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM 308
                   G+ GEE  L+L L+++A+VG++GLPNAGKSTL+A ++ A+P IADYPFTTL+
Sbjct: 144 --------GREGEEWPLQLELKLLAEVGIIGLPNAGKSTLIAVLSAARPKIADYPFTTLV 195

Query: 309 PNLG---RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVI 365
           PNLG   R  GD T+           AD+PGLIEGA  G GLG +FLRH+ RTRLL+H++
Sbjct: 196 PNLGVVRRPSGDGTV----------FADIPGLIEGAAQGSGLGHDFLRHIERTRLLIHLV 245

Query: 366 DAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404
           DA +E+PV D   V++EL  Y    ++RP ++V+NK +L
Sbjct: 246 DAGSEDPVADLNVVQQELEAYGHGLVDRPRLLVINKQEL 284

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Synechococcus sp. (strain CC9605) (taxid: 110662)

>sp|A1SMB4|OBG_NOCSJ GTPase obg OS=Nocardioides sp. (strain BAA-499 / JS614) GN=obg PE=3 SV=1

 Score =  192 bits (487), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 163/275 (59%), Gaps = 34/275 (12%)

Query: 140 VVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH 199
           V +  D    TLL++H+  +  A+ GG+       +   R G     L +PVP GTVV  
Sbjct: 48  VTLRVDPDVTTLLDYHHSPKRRAEHGGHG------AGAHRNGAHGADLVLPVPDGTVVSD 101

Query: 200 KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQH 259
            +G L +DL  PG E++VA+GGRGG+    +   +RK                  +LG+ 
Sbjct: 102 PQGHLLADLVGPGTELVVAQGGRGGLGNAALASAKRK-------------APGFALLGEP 148

Query: 260 GEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDP 318
           G+E+ + L L+VVAD+GLVG P+AGKS+L+AAI+ A+P IADYPFTTL+PNLG +  GD 
Sbjct: 149 GDELEIVLELKVVADIGLVGFPSAGKSSLIAAISRARPKIADYPFTTLVPNLGVVSAGDT 208

Query: 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----ENPVN 374
           T          T+AD+PGLIEGA  G+GLG +FLRH+ R   +VHV+D A+     NPV+
Sbjct: 209 TF---------TVADVPGLIEGASEGRGLGHDFLRHIERCAAIVHVVDTASIEPGRNPVD 259

Query: 375 DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409
           D   ++ EL  Y     +RP +V LNK+D+P+  D
Sbjct: 260 DLDVIENELTRYG-GLEDRPRLVALNKVDVPDGRD 293

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Nocardioides sp. (strain BAA-499 / JS614) (taxid: 196162)

>sp|A4J7I9|OBG_DESRM GTPase obg OS=Desulfotomaculum reducens (strain MI-1) GN=obg PE=3 SV=1

 Score =  189 bits (479), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 186/343 (54%), Gaps = 52/343 (15%)

Query: 76  YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGG 135
           ++DR  I V+ GDGG+G +              +  K  P+          G        
Sbjct: 2   FYDRAKIYVKGGDGGNGCIAM------------RREKYVPFGGPWGGDGGHGG------- 42

Query: 136 HGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGT 195
              DV   ADEG +TL +F  K+ + A+RGG+   MG    +   G A   L + VP GT
Sbjct: 43  ---DVTFIADEGLNTLQDFRYKKHFKAERGGH--GMG----KNMNGPAGEDLLVKVPTGT 93

Query: 196 VVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVL 254
           VV+  + G+L +DL   G +V++A+GGRGG   +    +  K               ++ 
Sbjct: 94  VVREAETGRLIADLLENGQQVVIAKGGRGGRGNVHFASSSNK-------------APRIA 140

Query: 255 VLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRL 314
             G+ GEE+ LEL L+V+ADVGL+G PNAGKST ++ ++ AKP IADYPFTTL+PNLG +
Sbjct: 141 EKGEPGEELWLELELKVIADVGLIGFPNAGKSTFISMVSAAKPKIADYPFTTLVPNLGVV 200

Query: 315 DGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA---AEN 371
               + G E       LAD+PGL+EGA  G GLG  FLRH  RTRLL+HV+D A     +
Sbjct: 201 ----SAGEE---GSFVLADIPGLVEGASQGVGLGHEFLRHTERTRLLIHVVDTAGTEGRD 253

Query: 372 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSR 414
           PV D + +  EL +Y+P    RP I+  NK+D+  + +++ +R
Sbjct: 254 PVEDIKIINRELELYDPRLSTRPQIIAANKMDIIPLAEENLAR 296

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Desulfotomaculum reducens (strain MI-1) (taxid: 349161)

>sp|Q8RBA5|OBG_THETN GTPase obg OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=obg PE=3 SV=1

 Score =  188 bits (478), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 31/271 (11%)

Query: 140 VVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGT-VVK 198
           V+  AD    TLL+F  KR+Y A+ G N        S+ + G     L I VP+GT ++ 
Sbjct: 45  VIFIADPNLSTLLDFKYKRKYIAENGENG------KSKNQYGKDGEDLYIKVPVGTTIIN 98

Query: 199 HKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQ 258
            + G++ +DL  P  + +V +GG+GG        N +    TL T    +        G+
Sbjct: 99  DETGEVIADLIKPYQKAIVLKGGKGGRG------NAKFATPTLKTPRFAES-------GE 145

Query: 259 HGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDP 318
            G E+ + L L+++ADVGLVG PNAGKSTLLA+ + A+P IA+YPFTTL PNLG +    
Sbjct: 146 KGREMWVRLELKLLADVGLVGFPNAGKSTLLASCSRARPKIANYPFTTLTPNLGVV---- 201

Query: 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA---AENPVND 375
               E       +AD+PGLIEGAH G+GLG +FLRH+ RT++L+HV+D +     +PV D
Sbjct: 202 ----EHKGKSFVMADIPGLIEGAHRGEGLGHDFLRHIERTKMLIHVVDVSGSEGRDPVED 257

Query: 376 YRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
           +  + EELR+Y+   +  P IV  NK+DLPE
Sbjct: 258 FEKINEELRLYDERLVTLPQIVAANKMDLPE 288

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|A5IKX2|OBG_THEP1 GTPase obg OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=obg PE=3 SV=1

 Score =  187 bits (476), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 137/340 (40%), Positives = 185/340 (54%), Gaps = 59/340 (17%)

Query: 72  EPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDF---DGS 128
           E   + DRV I V++GDGG+G V                         SF+R+     G 
Sbjct: 4   ERADFVDRVKIFVKAGDGGNGCV-------------------------SFRREKYVPKGG 38

Query: 129 LILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLR 188
                GG GG V + A+    TL+EF NKR++ A+ G +   MG    +   G     L 
Sbjct: 39  PDGGDGGDGGFVFLRANPSVSTLIEFVNKRKFVAENGKH--GMG----KKMKGRNGKDLF 92

Query: 189 IPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMR 247
           I VP+GTVVK    G++ +DL  PG  V VARGG+GG        N     +T    ++ 
Sbjct: 93  IDVPVGTVVKDAVTGEIIADLNEPGKIVCVARGGKGGRG------NAHFATSTKQAPLIA 146

Query: 248 DDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL 307
           +        G+ GE   LEL L+++ADVGLVG PN GKS+L++ I++A+P IA+YPFTTL
Sbjct: 147 ER-------GEKGESRWLELELKILADVGLVGYPNVGKSSLISRISNARPKIANYPFTTL 199

Query: 308 MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDA 367
           +PNLG +  D             +AD+PGLIEGA  G GLG  FLRH+ R  L+ HVID 
Sbjct: 200 IPNLGVVKYD--------DFSFVVADIPGLIEGASEGVGLGNVFLRHVERCYLIAHVIDV 251

Query: 368 AA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404
           +    E+PV DY  ++EE++ Y+P  LE+P IVV NKIDL
Sbjct: 252 SGYEREDPVRDYFVIREEMKKYSPFLLEKPEIVVANKIDL 291

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

>sp|B1LA53|OBG_THESQ GTPase obg OS=Thermotoga sp. (strain RQ2) GN=obg PE=3 SV=1

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/340 (40%), Positives = 185/340 (54%), Gaps = 59/340 (17%)

Query: 72  EPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDF---DGS 128
           E   + DRV I V++GDGG+G V                         SF+R+     G 
Sbjct: 4   ERADFVDRVKIFVKAGDGGNGCV-------------------------SFRREKYVPKGG 38

Query: 129 LILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLR 188
                GG GG V + A+    TL+EF NKR++ A+ G +   MG    +   G     L 
Sbjct: 39  PDGGDGGDGGFVFLRANPSVSTLIEFVNKRKFVAENGKH--GMG----KKMKGRNGKDLF 92

Query: 189 IPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMR 247
           I VP+GTVVK    G++ +DL  PG  V VARGG+GG        N     +T    ++ 
Sbjct: 93  IDVPVGTVVKDAVTGEIIADLNEPGKIVCVARGGKGGRG------NAHFATSTKQAPLIA 146

Query: 248 DDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL 307
           +        G+ GE   LEL L+++ADVGLVG PN GKS+L++ I++A+P IA+YPFTTL
Sbjct: 147 ER-------GEKGESRWLELELKILADVGLVGYPNVGKSSLISRISNARPKIANYPFTTL 199

Query: 308 MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDA 367
           +PNLG +  D             +AD+PGLIEGA  G GLG  FLRH+ R  L+ HVID 
Sbjct: 200 IPNLGVVKYD--------DFSFVVADIPGLIEGASEGVGLGNVFLRHVERCYLIAHVIDV 251

Query: 368 AA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404
           +    E+PV DY  ++EE++ Y+P  LE+P IVV NKIDL
Sbjct: 252 SGYEREDPVRDYFVIREEMKKYSPFLLEKPEIVVANKIDL 291

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Thermotoga sp. (strain RQ2) (taxid: 126740)

>sp|A9AXD9|OBG_HERA2 GTPase obg OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=obg PE=3 SV=1

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 187/354 (52%), Gaps = 62/354 (17%)

Query: 76  YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD---FDGSLILP 132
           + DR LITV++GDGG G                          ++F+R+     G     
Sbjct: 4   FIDRALITVKAGDGGDGM-------------------------ATFRREKYVPRGGPDGG 38

Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVP 192
            GG GG V +      +TLL F  +  + A +G N         Q + G       I VP
Sbjct: 39  DGGRGGSVYLEVSPHLNTLLPFRFETHFEADKGLNA------GRQRKRGRTGEDTFIRVP 92

Query: 193 LGTVVKHK-RGKLFS-DLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDT 250
            GT+V  +  G++ + DL  PG ++LVARGG+GG+              T +  + R   
Sbjct: 93  PGTIVSAEIEGEVQTVDLLFPGQKLLVARGGKGGLG--------NTHFATASNQVPR--- 141

Query: 251 DKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN 310
             +  LGQ GEE  L+L L+V+ADVGLVG PNAGKSTLL+ ++ A+P IA+YPFTTL PN
Sbjct: 142 --IAELGQPGEERELQLELKVIADVGLVGFPNAGKSTLLSMVSAARPKIANYPFTTLSPN 199

Query: 311 LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA-- 368
           LG         AE       +AD+PGLIEGA  G GLG +FLRH+ RTR+LVHV+DAA  
Sbjct: 200 LGV--------AEFNDFTFVVADIPGLIEGASRGVGLGHDFLRHIERTRILVHVLDAAGT 251

Query: 369 -AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP--EMYDDSSSRQGIGF 419
              +P  D+ T+  EL+ Y+ +  +RP +V LNK D+P  E +D+    Q I +
Sbjct: 252 EGRDPFEDFLTINAELKAYSSELAQRPQLVALNKTDIPDAEAFDELMRPQIIAW 305

An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.

Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) (taxid: 316274)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
317106668	504	JHL18I08.5 [Jatropha curcas]	0.909	0.759	0.760	1e-169
302142573	509	unnamed protein product [Vitis vinifera]	0.950	0.785	0.723	1e-160
359492702	614	PREDICTED: GTPase obg-like [Vitis vinife	0.912	0.625	0.748	1e-160
255538792	474	GTP-dependent nucleic acid-binding prote	0.947	0.841	0.730	1e-154
449460221	503	PREDICTED: GTPase obg-like [Cucumis sati	0.855	0.715	0.780	1e-152
357438135	540	GTPase obg [Medicago truncatula] gi|3554	0.935	0.729	0.708	1e-152
356564323	483	PREDICTED: GTPase obg-like [Glycine max]	0.923	0.805	0.705	1e-144
356551819	490	PREDICTED: GTPase obg-like [Glycine max]	0.902	0.775	0.696	1e-144
242037769	505	hypothetical protein SORBIDRAFT_01g00496	0.864	0.720	0.681	1e-142
147782291	484	hypothetical protein VITISV_037057 [Viti	0.888	0.772	0.712	1e-140

>gi|317106668|dbj|BAJ53171.1| JHL18I08.5 [Jatropha curcas]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/393 (76%), Positives = 336/393 (85%), Gaps = 10/393 (2%)

Query: 30  FNNQLIFKSNVL---------KYENLRYDSISCRHTRTRESNSTSPATLVKEPHKYFDRV 80
           F N  +F S++L          Y+  R+ +I CR TR +E+ S + A+LV+EPHKYFD+V
Sbjct: 17  FGNDKLFFSHLLPKRCCQRKCNYDIFRHCTIKCRVTRPKEAPSANLASLVREPHKYFDQV 76

Query: 81  LITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDV 140
           +ITVRSGDGGHGA+L MP Q +  KS G   K+    KSS+KRDFDGSLILPMGGHGGD+
Sbjct: 77  IITVRSGDGGHGAILSMPNQRS-PKSKGSWDKDKTSYKSSYKRDFDGSLILPMGGHGGDI 135

Query: 141 VIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK 200
           V+YADEGKD+LLEFH K  +NAKRGGNVD MGVL+SQL  G AAPTLRI VPLGTVVKHK
Sbjct: 136 VVYADEGKDSLLEFHTKSSFNAKRGGNVDGMGVLTSQLHDGFAAPTLRIAVPLGTVVKHK 195

Query: 201 RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHG 260
           RGKL +DLA PGDE+LVARGG+GGISLL+VPE+RRKR+ TLTTN++RDD DKVL+LGQ G
Sbjct: 196 RGKLLADLAQPGDEILVARGGQGGISLLKVPEHRRKRLMTLTTNVLRDDGDKVLILGQPG 255

Query: 261 EEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL 320
           EEVSLELILRVVADVGLVGLPNAGKSTLLAAIT AKPDIADYPFTTLMPNLGRLDGDPTL
Sbjct: 256 EEVSLELILRVVADVGLVGLPNAGKSTLLAAITRAKPDIADYPFTTLMPNLGRLDGDPTL 315

Query: 321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVK 380
           GA  YSSEATLADLPGL+EGAHLGKGLGRNFLRHLRRTR+LVHV+DAAAE+PVNDY TVK
Sbjct: 316 GAGMYSSEATLADLPGLVEGAHLGKGLGRNFLRHLRRTRVLVHVVDAAAEDPVNDYITVK 375

Query: 381 EELRMYNPDYLERPFIVVLNKIDLPEMYDDSSS 413
           EELRMYNP+YLERP+IVVLNKIDLPE  D  SS
Sbjct: 376 EELRMYNPEYLERPYIVVLNKIDLPEARDRLSS 408

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142573|emb|CBI19776.3| unnamed protein product [Vitis vinifera]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/412 (72%), Positives = 342/412 (83%), Gaps = 12/412 (2%)

Query: 10  PLSSSSSSSF-LTLHSYNKILFNNQLI---FKSNVLKYENLRYDSISCRHTR-------- 57
           PL S  SS+      +     F ++L+   F      + +    ++ CR TR        
Sbjct: 3   PLVSLQSSNLHFGTDTLISFFFPDRLLPKRFNQQRCSFRSSGQYTLKCRLTREKESPSLR 62

Query: 58  TRESNSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWK 117
           T+ES S  P++L++EPHKYFD+VLITVRSGDGGHGA+L MP Q A +K  GK  K+   K
Sbjct: 63  TKESPSPGPSSLIREPHKYFDQVLITVRSGDGGHGAILSMPNQRAPSKPQGKHDKDKMRK 122

Query: 118 KSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQ 177
           KSS+KRDFDGSLILPMGGHGG V+IYADEG+D+LLEFH K R+NAKRGGNVD+MGVL+SQ
Sbjct: 123 KSSYKRDFDGSLILPMGGHGGGVIIYADEGEDSLLEFHKKSRHNAKRGGNVDAMGVLTSQ 182

Query: 178 LRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKR 237
           L  GLAAPTLRIPVP+GTVVK KRGKL +DLA PGDE+LVARGG+GGISL+E+PE++RK+
Sbjct: 183 LHDGLAAPTLRIPVPVGTVVKRKRGKLLADLAQPGDEILVARGGQGGISLIEMPEHKRKK 242

Query: 238 MTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKP 297
           +  LTTN+MRDD DKVLVLGQ GEEVSLELILRVVADVGLVGLPNAGKSTLLAAIT AKP
Sbjct: 243 LMALTTNVMRDDNDKVLVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKP 302

Query: 298 DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR 357
           DIADYPFTTLMPNLGRLDGDP+LGA KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR
Sbjct: 303 DIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR 362

Query: 358 TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409
           TRLLVHV+DAAAE+PV DYRTVKEELRMYNP+YLERP++VVLNKID+P+  D
Sbjct: 363 TRLLVHVVDAAAEDPVKDYRTVKEELRMYNPNYLERPYVVVLNKIDIPKAMD 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492702|ref|XP_002280904.2| PREDICTED: GTPase obg-like [Vitis vinifera]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 295/394 (74%), Positives = 335/394 (85%), Gaps = 10/394 (2%)

Query: 26  NKILF--NNQLIFKSNVLKYENLRYDSISCRHTR--------TRESNSTSPATLVKEPHK 75
           N+IL     Q  F      + +    ++ CR TR        T+ES S  P++L++EPHK
Sbjct: 150 NEILMARGRQGGFNQQRCSFRSSGQYTLKCRLTREKESPSLRTKESPSPGPSSLIREPHK 209

Query: 76  YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGG 135
           YFD+VLITVRSGDGGHGA+L MP Q A +K  GK  K+   KKSS+KRDFDGSLILPMGG
Sbjct: 210 YFDQVLITVRSGDGGHGAILSMPNQRAPSKPQGKHDKDKMRKKSSYKRDFDGSLILPMGG 269

Query: 136 HGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGT 195
           HGG V+IYADEG+D+LLEFH K R+NAKRGGNVD+MGVL+SQL  GLAAPTLRIPVP+GT
Sbjct: 270 HGGGVIIYADEGEDSLLEFHKKSRHNAKRGGNVDAMGVLTSQLHDGLAAPTLRIPVPVGT 329

Query: 196 VVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLV 255
           VVK KRGKL +DLA PGDE+LVARGG+GGISL+E+PE++RK++  LTTN+MRDD DKVLV
Sbjct: 330 VVKRKRGKLLADLAQPGDEILVARGGQGGISLIEMPEHKRKKLMALTTNVMRDDNDKVLV 389

Query: 256 LGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD 315
           LGQ GEEVSLELILRVVADVGLVGLPNAGKSTLLAAIT AKPDIADYPFTTLMPNLGRLD
Sbjct: 390 LGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLD 449

Query: 316 GDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVND 375
           GDP+LGA KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DAAAE+PV D
Sbjct: 450 GDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAEDPVKD 509

Query: 376 YRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409
           YRTVKEELRMYNP+YLERP++VVLNKID+P+  D
Sbjct: 510 YRTVKEELRMYNPNYLERPYVVVLNKIDIPKAMD 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538792|ref|XP_002510461.1| GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis] gi|223551162|gb|EEF52648.1| GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 301/412 (73%), Positives = 346/412 (83%), Gaps = 13/412 (3%)

Query: 7   LAYPLSSSSSSSFLTLH-SYNKILFNNQL----IFKSNVLKYENLRYDSISCRHTRTRES 61
           +AY +++  SSSFL+L    +K+LF + L      ++N  K + LR   +SCR ++ +E+
Sbjct: 1   MAY-VATIPSSSFLSLQFCSDKLLFAHLLPERCCQRNN--KSDTLRTYKVSCRISKLKEA 57

Query: 62  NSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSF 121
               PA+ ++EPHKYFD+V+ITVRSGDGGHGA+L MP     +       K+   KKSS+
Sbjct: 58  ---PPASFIREPHKYFDQVIITVRSGDGGHGAILNMPQPQQKSSDVKSKKKQ--NKKSSY 112

Query: 122 KRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGG 181
           KRDFDGSLILPMGGHGGDVVIYADEGKD LLEFH+K R+NAKRGGNVD+MGVL+S L  G
Sbjct: 113 KRDFDGSLILPMGGHGGDVVIYADEGKDFLLEFHSKSRFNAKRGGNVDAMGVLNSLLHDG 172

Query: 182 LAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTL 241
            AAPTLRIPVP+GTVVKHKRGKL +DL  PGDE+LVARGG+GGISLL+ PE+RRKR+  L
Sbjct: 173 FAAPTLRIPVPVGTVVKHKRGKLLADLTQPGDEILVARGGQGGISLLDAPEHRRKRLMAL 232

Query: 242 TTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIAD 301
           TTN++RDD+DKVLVLGQ GEEV+LELILRVVADVGLVGLPNAGKSTLLAAITHA+PDIAD
Sbjct: 233 TTNVLRDDSDKVLVLGQPGEEVNLELILRVVADVGLVGLPNAGKSTLLAAITHARPDIAD 292

Query: 302 YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLL 361
           YPFTTLMPNLGRLDGDPTLGA  YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLL
Sbjct: 293 YPFTTLMPNLGRLDGDPTLGAAMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLL 352

Query: 362 VHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSS 413
           VHV+DAAAE+PVNDYRTVKEELRMYNP+YLERP +VVLNKIDLP   D  SS
Sbjct: 353 VHVVDAAAEDPVNDYRTVKEELRMYNPEYLERPHVVVLNKIDLPGAKDRLSS 404

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460221|ref|XP_004147844.1| PREDICTED: GTPase obg-like [Cucumis sativus] gi|449521477|ref|XP_004167756.1| PREDICTED: GTPase obg-like [Cucumis sativus]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/364 (78%), Positives = 318/364 (87%), Gaps = 4/364 (1%)

Query: 45  NLRYDSISCRHTRTRESNSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVA 104
           N  Y +I C+  R  +S S +PATL KE HKYFD+ +ITVRSGDGGHG VL MP Q   +
Sbjct: 38  NSSYCTIKCKLARVVDS-SANPATLTKEAHKYFDQAIITVRSGDGGHGTVLSMPNQQT-S 95

Query: 105 KSHGK--LAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNA 162
           KS G+    KE   KKS +KRDFDGSLILPMGG GGDVVIYADEGKD+LLEFH K RYNA
Sbjct: 96  KSQGRNGKEKEKAKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNA 155

Query: 163 KRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGR 222
           KRGGNVD+MGVL+SQL  G AAPTLRIPVP+GTVVK KRGKL +DL HPGDE+LVARGG+
Sbjct: 156 KRGGNVDAMGVLTSQLHNGFAAPTLRIPVPIGTVVKRKRGKLLADLVHPGDEILVARGGQ 215

Query: 223 GGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPN 282
           GGISL++ PENR+K+M +LT+N+MRD++DKVLV GQ GEEVSLELILRVVADVGLVGLPN
Sbjct: 216 GGISLIDTPENRKKKMMSLTSNVMRDESDKVLVFGQPGEEVSLELILRVVADVGLVGLPN 275

Query: 283 AGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342
           AGKSTLLAAIT AKPDIADYPFTTL+PNLGRLDGDP+LGA  Y SEATLADLPGLIEGAH
Sbjct: 276 AGKSTLLAAITLAKPDIADYPFTTLIPNLGRLDGDPSLGAGMYQSEATLADLPGLIEGAH 335

Query: 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402
           LGKGLGRNFLRHLRRTRLLVHV+DAAA+NPV+DYRTV+EELRMYNP+YL RP++VVLNKI
Sbjct: 336 LGKGLGRNFLRHLRRTRLLVHVVDAAAQNPVDDYRTVREELRMYNPNYLGRPYVVVLNKI 395

Query: 403 DLPE 406
           DLPE
Sbjct: 396 DLPE 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438135|ref|XP_003589343.1| GTPase obg [Medicago truncatula] gi|355478391|gb|AES59594.1| GTPase obg [Medicago truncatula]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/398 (70%), Positives = 323/398 (81%), Gaps = 4/398 (1%)

Query: 14  SSSSSFLTLHSYNKILFNNQLI-FKSNVLKYENLRYDSISCRHTRTRESNSTSPATLVKE 72
           S   SFLT+H       NN  +       K++  +  +I CR      +       L KE
Sbjct: 7   SPPPSFLTIHLPKTRFSNNHFLQLPQRTFKFQQHKRKTIQCRIQTLNPTQPPPSPALTKE 66

Query: 73  PHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAK---ENPWKKSSFKRDFDGSL 129
           PHK+FD+V+ITVR GDGGHGA+L    +  + K   K  K   +N  KKS+ KRDFDGSL
Sbjct: 67  PHKFFDQVIITVRGGDGGHGAILNQKPKKEIEKPKSKTKKAIIDNSHKKSALKRDFDGSL 126

Query: 130 ILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRI 189
           ILPMGGHGGDV++YADEGKDTLLEFH+K R+NAKRGGNVD++GV +S LR G++APT+RI
Sbjct: 127 ILPMGGHGGDVILYADEGKDTLLEFHSKSRFNAKRGGNVDAVGVFTSYLRNGISAPTVRI 186

Query: 190 PVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDD 249
           PVPLGTVVK KRGK+ +DLA PGDEVLVARGG+GGISLLE+P + RK+ T+LTTN+MRDD
Sbjct: 187 PVPLGTVVKSKRGKMLADLARPGDEVLVARGGQGGISLLEMPRHNRKKATSLTTNVMRDD 246

Query: 250 TDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP 309
           +DKVLV GQ GEEV LELILRVVADVGL+GLPNAGKSTLLAAIT AKPDIADYPFTTLMP
Sbjct: 247 SDKVLVHGQPGEEVKLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMP 306

Query: 310 NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA 369
           NLGRLDGDP LGA  YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DA+ 
Sbjct: 307 NLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAST 366

Query: 370 ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407
           ENPVNDYRTV+EELRMYNP+YLERP+IVVLNKIDLPE+
Sbjct: 367 ENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDLPEL 404

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564323|ref|XP_003550404.1| PREDICTED: GTPase obg-like [Glycine max]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/400 (70%), Positives = 325/400 (81%), Gaps = 11/400 (2%)

Query: 11  LSSSSSSSFLTLHSYNKILFNNQLI-FKSNVLKYENLRYDSISCRHTRTRESNSTSPATL 69
           +S+S  SS   +H +    F+ + + F+ N + Y   +  ++ C  T    S   S  +L
Sbjct: 5   ISTSPPSSSFNIHPF----FSPRGVQFRHNCVNY---KRKTVRCAVTSADASPPPS-TSL 56

Query: 70  VKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSL 129
            KEPHKYFD V+ITVR+GDGGHGAVL    Q    +  GK   +    K S KRDFDGSL
Sbjct: 57  AKEPHKYFDHVIITVRAGDGGHGAVLNQQQQQQQQQQQGKTKLKK--GKGSLKRDFDGSL 114

Query: 130 ILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRI 189
           ILPMGGHGGDVV+YADE KDTLLEFHNK RY+AKRGGNVD+MGVL+S LR GLAAPTLRI
Sbjct: 115 ILPMGGHGGDVVLYADESKDTLLEFHNKGRYHAKRGGNVDAMGVLTSMLRDGLAAPTLRI 174

Query: 190 PVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDD 249
            VP+GTVVK KRGK+ +DLA P DEVLVARGG+GGISLLE+P+++RK+M  LTTN+MRDD
Sbjct: 175 AVPVGTVVKSKRGKMLADLAQPWDEVLVARGGQGGISLLEMPQHKRKKMMALTTNVMRDD 234

Query: 250 TDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP 309
           +DKVL+ GQ GEEV LELILRVVADVGL+GLPNAGKSTLLAAIT AKPDIADYPFTTLMP
Sbjct: 235 SDKVLIHGQPGEEVKLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMP 294

Query: 310 NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA 369
           NLGRL GDP+LGA  YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DAA 
Sbjct: 295 NLGRLGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAT 354

Query: 370 ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409
           ENP+NDYRTV+EELRMYNP+YL+RP++V+LNKIDLPE  D
Sbjct: 355 ENPINDYRTVREELRMYNPEYLDRPYVVILNKIDLPEAKD 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551819|ref|XP_003544271.1| PREDICTED: GTPase obg-like [Glycine max]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/402 (69%), Positives = 323/402 (80%), Gaps = 22/402 (5%)

Query: 30  FNNQLIFKSNVLK--YENLRYDSISCRHTR--------------TRESNSTSP--ATLVK 71
           FN QL+ ++      +   R+ S+   HTR                 +++++P   +L K
Sbjct: 8   FNIQLLHETRFFSPFFLPPRHRSVQFHHTRRNFVNYKRKTARCGVTSADASTPLSTSLAK 67

Query: 72  EPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLIL 131
           EPHKYFD V+ITVRSGDGGHGAVL    Q    +   KL K     K S KRDFDGSLIL
Sbjct: 68  EPHKYFDHVIITVRSGDGGHGAVLNQQQQEQEQQGKTKLKK----GKGSLKRDFDGSLIL 123

Query: 132 PMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPV 191
           PMGGHGGDV++YADE KDTLLEFHNK RY+AKRGGNVD+MGVL+S LR GLAAPTLRIPV
Sbjct: 124 PMGGHGGDVLLYADESKDTLLEFHNKSRYHAKRGGNVDAMGVLTSMLRDGLAAPTLRIPV 183

Query: 192 PLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 251
           P+GTVVK KRGK+ +DLA P DEVLVARGG+GGISLLE+P+++RK+M  LTTN+MRD++D
Sbjct: 184 PVGTVVKSKRGKMLADLAQPWDEVLVARGGQGGISLLEIPQHKRKKMMALTTNVMRDESD 243

Query: 252 KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 311
           KVL+ GQ GEEV LELILRVVAD+GL+GLPNAGKSTLLAAIT AKPDIADYPFTTLMPNL
Sbjct: 244 KVLIHGQPGEEVKLELILRVVADIGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNL 303

Query: 312 GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN 371
           GRL GDP+LGA  YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV+DAA EN
Sbjct: 304 GRLGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAATEN 363

Query: 372 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSS 413
           P+NDYRTV+EELRMYNP+YLERP++++LNKIDLPE  D   S
Sbjct: 364 PINDYRTVREELRMYNPEYLERPYVIILNKIDLPEAKDKLQS 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242037769|ref|XP_002466279.1| hypothetical protein SORBIDRAFT_01g004960 [Sorghum bicolor] gi|241920133|gb|EER93277.1| hypothetical protein SORBIDRAFT_01g004960 [Sorghum bicolor]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/374 (68%), Positives = 302/374 (80%), Gaps = 10/374 (2%)

Query: 50  SISCRHTRTRESNSTS------PATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPT--QS 101
           +++C   R +E   ++      P  L KE HKYFD  ++TVR+GDGGHGAVL MP    +
Sbjct: 45  AVTCCAARVKEPAPSAGALPPPPQALAKEAHKYFDHAVVTVRAGDGGHGAVLAMPPPPSA 104

Query: 102 AVAKSHGKLAK-ENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRY 160
             AK  G+  + E   KK S+KR++DGS+ LPMGGHGGDVV+YADE ++TLL FH K RY
Sbjct: 105 DAAKPRGRFNRGEKKSKKVSYKRNYDGSVALPMGGHGGDVVVYADEAEETLLRFHEKARY 164

Query: 161 NAKRGGNVDSMG-VLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVAR 219
            AKRGGNV + G  LSS++  G A  TLRIPVP+GTVVK K+G + +DLAHPGDEVLVAR
Sbjct: 165 CAKRGGNVGAAGGTLSSRMHSGFAGETLRIPVPVGTVVKRKKGAVLADLAHPGDEVLVAR 224

Query: 220 GGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVG 279
           GG+GGISL++VPE RR++   L+ NIMRD +DKVL  GQ GEEVSLELILRVVADVGLVG
Sbjct: 225 GGQGGISLIDVPEYRRRKAMALSPNIMRDTSDKVLTHGQPGEEVSLELILRVVADVGLVG 284

Query: 280 LPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 339
           LPNAGKSTLL+AIT A+PDIADYPFTTLMPNLGRL GDP LGA ++SSEATLADLPGLIE
Sbjct: 285 LPNAGKSTLLSAITLARPDIADYPFTTLMPNLGRLGGDPALGALQFSSEATLADLPGLIE 344

Query: 340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 399
           GAHLGKGLGRNFLRHLRRTR++VHV+DAAA++PVNDY+ V+EELRMYNP YLERP++VVL
Sbjct: 345 GAHLGKGLGRNFLRHLRRTRVIVHVVDAAADDPVNDYKIVREELRMYNPQYLERPYVVVL 404

Query: 400 NKIDLPEMYDDSSS 413
           NKIDLP+  D  SS
Sbjct: 405 NKIDLPKANDRLSS 418

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782291|emb|CAN60824.1| hypothetical protein VITISV_037057 [Vitis vinifera]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/386 (71%), Positives = 315/386 (81%), Gaps = 12/386 (3%)

Query: 10  PLSSSSSSSF-LTLHSYNKILFNNQLI---FKSNVLKYENLRYDSISCRHTR-------- 57
           PL S  SS+      +     F ++L+   F      + +    ++ CR TR        
Sbjct: 3   PLVSLQSSNLHFGTDTLISFFFPDRLLPKRFNQQRCSFRSSGQYTLKCRLTREKESPSLR 62

Query: 58  TRESNSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWK 117
           T+ES S  P++L++EPHKYFD+VLITVRSGDGGHGA+L MP Q A +K  GK  K+   K
Sbjct: 63  TKESPSPGPSSLIREPHKYFDQVLITVRSGDGGHGAILSMPNQRAPSKPQGKHDKDKMRK 122

Query: 118 KSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQ 177
           KSS+KRDFDGSLILP GGHGG V+IYADEG+D+LLEFH K R+NAKRGGNVD+MGVL+SQ
Sbjct: 123 KSSYKRDFDGSLILPXGGHGGGVIIYADEGEDSLLEFHKKSRHNAKRGGNVDAMGVLTSQ 182

Query: 178 LRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKR 237
           L  GLAAPTLRIPVP+GTVVK KRGKL +DLA PGDE+LVARGG+GGISL+E+PE++RK+
Sbjct: 183 LHDGLAAPTLRIPVPVGTVVKRKRGKLLADLAQPGDEILVARGGQGGISLIEMPEHKRKK 242

Query: 238 MTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKP 297
           +  LTTN MRDD DKVL+LGQ GEEVSLELILRVVADVGLVGLPNAGKSTLLAAIT AKP
Sbjct: 243 LMALTTNXMRDDNDKVLILGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKP 302

Query: 298 DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR 357
           DIADYPFTTLMPNLGRLDGDP+LGA KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR
Sbjct: 303 DIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR 362

Query: 358 TRLLVHVIDAAAENPVNDYRTVKEEL 383
           TRLLVHV+DAAAE+PV DYRTVKE +
Sbjct: 363 TRLLVHVVDAAAEDPVKDYRTVKEAM 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2182998	681	EMB269 "EMBRYO DEFECTIVE 269"	0.603	0.372	0.364	3.1e-43
UNIPROTKB|Q3ZAJ2	424	obg "GTPase obg" [Dehalococcoi	0.577	0.573	0.390	1.1e-42
TIGR_CMR|DET_0002	424	DET_0002 "GTP-binding protein,	0.577	0.573	0.390	1.1e-42
TIGR_CMR|CHY_0370	429	CHY_0370 "spo0B-associated GTP	0.486	0.477	0.414	7.4e-40
TIGR_CMR|BA_4672	428	BA_4672 "spo0B-associated GTP-	0.515	0.507	0.381	2.2e-38
ZFIN|ZDB-GENE-040718-153	380	gtpbp10 "GTP-binding protein 1	0.342	0.378	0.412	1.2e-37
UNIPROTKB|Q0BZ39	356	obg "GTPase obg" [Hyphomonas n	0.496	0.587	0.413	4e-37
UNIPROTKB|Q83ED8	339	obg "GTPase obg" [Coxiella bur	0.586	0.728	0.371	6.4e-37
TIGR_CMR|CBU_0387	339	CBU_0387 "GTP-binding protein,	0.586	0.728	0.371	6.4e-37
UNIPROTKB|P71909	479	obg "GTPase obg" [Mycobacteriu	0.491	0.432	0.406	1e-36

TAIR|locus:2182998 EMB269 "EMBRYO DEFECTIVE 269" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 3.1e-43, Sum P(2) = 3.1e-43
 Identities = 104/285 (36%), Positives = 152/285 (53%)

Query:   134 GGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGG----LAAP--TL 187
             GG GG+V +  D   ++LL F     + A RG +    G + S  +G       AP   +
Sbjct:   246 GGRGGNVYVEVDGSMNSLLPFRKSVHFRAGRGEH--GRGKMQSGAKGDNVVVKVAPGTVV 303

Query:   188 RIPVPLGTVVKHKRGK---LFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTN 244
             R    +G+ V+ + G+   +  +L HPG   L+  GGRGG           K +  +  N
Sbjct:   304 RQAREVGSEVEGEEGEEKEVLLELLHPGQRALLLPGGRGGRGNASFKSGMNK-VPRIAEN 362

Query:   245 IMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPF 304
                         G+ G E+ L+L L++VADVG+VG PNAGKSTLL+ I+ A+P IA+YPF
Sbjct:   363 ------------GEEGPEMWLDLELKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPF 410

Query:   305 TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXX 364
             TTL+PNLG +  D       Y S   +ADLPGL+EGAH G GLG  F             
Sbjct:   411 TTLLPNLGVVSFD-------YDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALVHV 463

Query:   365 IDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409
             +D +A  P  ++  V+ EL +++P+  E+P++V  NK+DLP+ Y+
Sbjct:   464 VDGSAPQPELEFEAVRLELELFSPEIAEKPYVVAYNKMDLPDAYE 508

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0006364 "rRNA processing" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0016556 "mRNA modification" evidence=RCA

UNIPROTKB|Q3ZAJ2 obg "GTPase obg" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 406 (148.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 107/274 (39%), Positives = 150/274 (54%)

Query:   134 GGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPL 193
             GG GG+V + AD G  +LL F +KR + A  G N   MG   S+  G   A  L I VP+
Sbjct:    37 GGDGGNVYLEADSGLYSLLNFKHKRVHKAANGEN--GMG---SRCTGHNGAD-LVIKVPV 90

Query:   194 GTV--VKHKRG--KLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDD 249
             GTV  +  + G  ++ +DLA  GD  LVARGG+GG+       N        +TN     
Sbjct:    91 GTVATIVEENGQKRVLADLAADGDRTLVARGGQGGLG------NTH---FVSSTN----Q 137

Query:   250 TDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP 309
                +   GQ G E  L L L+++ADV ++G PN GKS+LL+ +T AKP +A+YPFTTL P
Sbjct:   138 APMLAQKGQPGGEYELILELKLIADVAIIGYPNVGKSSLLSLLTAAKPRVANYPFTTLSP 197

Query:   310 NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAA 369
              +G +        E+      +A++PGLIE AHLG+GLG +F             +D  +
Sbjct:   198 VMGVV--------ERTEGTFVMAEVPGLIEDAHLGRGLGHDFLRHISRTRMVIHLLDGTS 249

Query:   370 ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403
             +NP++D   V  EL +Y+    ERP +V +NKID
Sbjct:   250 DNPIDDMIKVNSELYLYDASLSERPQVVAVNKID 283

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0002 DET_0002 "GTP-binding protein, GTP1/OBG family" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 406 (148.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 107/274 (39%), Positives = 150/274 (54%)

Query:   134 GGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPL 193
             GG GG+V + AD G  +LL F +KR + A  G N   MG   S+  G   A  L I VP+
Sbjct:    37 GGDGGNVYLEADSGLYSLLNFKHKRVHKAANGEN--GMG---SRCTGHNGAD-LVIKVPV 90

Query:   194 GTV--VKHKRG--KLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDD 249
             GTV  +  + G  ++ +DLA  GD  LVARGG+GG+       N        +TN     
Sbjct:    91 GTVATIVEENGQKRVLADLAADGDRTLVARGGQGGLG------NTH---FVSSTN----Q 137

Query:   250 TDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP 309
                +   GQ G E  L L L+++ADV ++G PN GKS+LL+ +T AKP +A+YPFTTL P
Sbjct:   138 APMLAQKGQPGGEYELILELKLIADVAIIGYPNVGKSSLLSLLTAAKPRVANYPFTTLSP 197

Query:   310 NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAA 369
              +G +        E+      +A++PGLIE AHLG+GLG +F             +D  +
Sbjct:   198 VMGVV--------ERTEGTFVMAEVPGLIEDAHLGRGLGHDFLRHISRTRMVIHLLDGTS 249

Query:   370 ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403
             +NP++D   V  EL +Y+    ERP +V +NKID
Sbjct:   250 DNPIDDMIKVNSELYLYDASLSERPQVVAVNKID 283

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0370 CHY_0370 "spo0B-associated GTP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 388 (141.6 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 95/229 (41%), Positives = 130/229 (56%)

Query:   179 RGGLAAPTLRIPVPLGTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKR 237
             R G A   L I VP+GTVVK +  G++ +D+   G EV+VARGGRGG         R   
Sbjct:    77 RHGKAGENLYIRVPVGTVVKDEATGEILADITEHGQEVVVARGGRGG---------RGNA 127

Query:   238 MTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKP 297
                  T+       K   LG+ GEE  L L L+++ADVGLVG PNAGKSTL++ ++ A+P
Sbjct:   128 HFASPTH----QAPKFAELGEPGEERWLLLELKLLADVGLVGYPNAGKSTLISRVSAARP 183

Query:   298 DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXX 357
              IADYPFTTL PNLG ++    +G         +AD+PGLIEGAH G GLG  F      
Sbjct:   184 KIADYPFTTLTPNLGVVE----VGE---GQSFVMADIPGLIEGAHAGVGLGHQFLRHVER 236

Query:   358 XXXXXXXIDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403
                    +D +     +PV+D+  + +EL++YN   L +P ++  NK+D
Sbjct:   237 TRVLLMVLDMSGFEGRDPVDDFEVLLKELKLYNEQLLTKPLVIAANKMD 285

GO:0005525 "GTP binding" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

TIGR_CMR|BA_4672 BA_4672 "spo0B-associated GTP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 373 (136.4 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 93/244 (38%), Positives = 135/244 (55%)

Query:   181 GLAAPTLRIPVPLGTVVK-HKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMT 239
             G  +  L + VP GTVVK  K G++ +DL   G   ++A+GGRGG            R  
Sbjct:    79 GRKSEDLLVKVPPGTVVKDEKTGQILADLVTHGQTAVIAKGGRGG--------RGNSRFA 130

Query:   240 TLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI 299
             T T     +   ++   G+ G+E  + L L+V+ADVGLVG P+ GKSTLL+ ++ A+P I
Sbjct:   131 TAT-----NPAPEIAENGEPGQERDVILELKVLADVGLVGFPSVGKSTLLSVVSSARPKI 185

Query:   300 ADYPFTTLMPNLGRLD-GDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXX 358
             A+Y FTT++PNLG ++ GD        +    +ADLPGLIEGAH G GLG  F       
Sbjct:   186 AEYHFTTIVPNLGVVETGD--------NRSFVMADLPGLIEGAHAGVGLGHQFLRHIERT 237

Query:   359 XXXXXXIDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSS-R 414
                   ID +     +P  DY T+  EL+ YN    ERP +VV NK+D+P+  ++  + +
Sbjct:   238 RVIVHVIDMSGLEGRDPYEDYVTINNELKEYNLRLTERPQVVVANKMDMPDAEENLQAFK 297

Query:   415 QGIG 418
             + +G
Sbjct:   298 EKVG 301

GO:0000160 "phosphorelay signal transduction system" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

ZFIN|ZDB-GENE-040718-153 gtpbp10 "GTP-binding protein 10 (putative)" [Danio rerio (taxid:7955)]

 Score = 299 (110.3 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
 Identities = 66/160 (41%), Positives = 96/160 (60%)

Query:   256 LGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD 315
             L   G+  ++ L L+++AD GLVG PNAGKS+LL A++HAKP IA+YPFTT+ P +G++ 
Sbjct:   132 LPNKGQTRNIRLDLKLIADFGLVGFPNAGKSSLLTALSHAKPKIANYPFTTIKPEIGKVM 191

Query:   316 GDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDA-----AAE 370
              D          + ++ADLPGLIEGAH+ KG+G  F             +D      A++
Sbjct:   192 YDD-------HKQVSVADLPGLIEGAHVNKGMGHKFLKHVERTKQLMFVVDVCGFQLASK 244

Query:   371 NPVND-YRTV---KEELRMYNPDYLERPFIVVLNKIDLPE 406
              P    + TV    +EL +Y  + L +P I+V+NK+DLPE
Sbjct:   245 TPFRSAFETVLLLSKELELYKEELLSKPAILVINKMDLPE 284

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q0BZ39 obg "GTPase obg" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 364 (133.2 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 96/232 (41%), Positives = 125/232 (53%)

Query:   179 RGGLAAPTLRIPVPLGT-VVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKR 237
             R G       + VP+GT + +  +  + +DL   G  VL+A GG GG   L     R K 
Sbjct:    78 RTGARGEDAVLKVPVGTQIYEEDQETMIADLTEVGQRVLLAPGGNGGWGNL-----RFK- 131

Query:   238 MTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKP 297
              +++     R +       G+ GEE  + L L+++AD GLVGLPNAGKST L+  T A P
Sbjct:   132 -SSINQAPRRSNP------GEEGEERWIWLRLKLIADAGLVGLPNAGKSTFLSVATAANP 184

Query:   298 DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXX 357
              IADYPFTTL P LG +D    LG    S+   LAD+PGLIEGA  G GLG  F      
Sbjct:   185 KIADYPFTTLHPGLGVVD----LGT---STRFVLADIPGLIEGAAEGAGLGHRFLGHVER 237

Query:   358 XXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL--PEM 407
                    ID   ++P   YRT++ EL  Y+ D+ +RP IV LNKID   PE+
Sbjct:   238 CKVLLHLIDCTQDDPAGAYRTIRSELEAYDADFADRPEIVALNKIDALTPEL 289

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83ED8 obg "GTPase obg" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 359 (131.4 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 104/280 (37%), Positives = 140/280 (50%)

Query:   132 PMGGHGGDV-VIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIP 190
             P GG GGD   +Y    K        + +   +       MG    +LR G     L +P
Sbjct:    34 PDGGDGGDGGSVYFVADKSVNTLVEFRYQRLLRAQNGQPGMG----RLRSGKKGEDLIVP 89

Query:   191 VPLGTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTNIMR 247
             VPLGT V  K   +L  DL   GD++ VARGGR G+  +  +   NR  R TT       
Sbjct:    90 VPLGTTVYDKETSELIGDLIEAGDKLCVARGGRHGLGNTHFKSSTNRAPRRTTS------ 143

Query:   248 DDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL 307
                      G+ GE   L+L L+++ADVGL+GLPNAGKST + A++ A P IADYPFTTL
Sbjct:   144 ---------GEEGEARELKLELKLLADVGLLGLPNAGKSTFIHAVSKATPKIADYPFTTL 194

Query:   308 MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDA 367
              P+LG       +  E+Y S   +AD+PGLIEGA  G GLG  F             +D 
Sbjct:   195 YPHLG------VVRVEEYRS-FVIADIPGLIEGASEGAGLGVQFLKHLERTQLLLHIVDI 247

Query:   368 A---AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404
             A     +PV   + +  EL  ++ +  ++P  +V NKIDL
Sbjct:   248 APLDGSDPVQSIQAIISELEQFSQNLSQKPRWLVFNKIDL 287

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0387 CBU_0387 "GTP-binding protein, GTP1/Obg family" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 359 (131.4 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 104/280 (37%), Positives = 140/280 (50%)

Query:   132 PMGGHGGDV-VIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIP 190
             P GG GGD   +Y    K        + +   +       MG    +LR G     L +P
Sbjct:    34 PDGGDGGDGGSVYFVADKSVNTLVEFRYQRLLRAQNGQPGMG----RLRSGKKGEDLIVP 89

Query:   191 VPLGTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTNIMR 247
             VPLGT V  K   +L  DL   GD++ VARGGR G+  +  +   NR  R TT       
Sbjct:    90 VPLGTTVYDKETSELIGDLIEAGDKLCVARGGRHGLGNTHFKSSTNRAPRRTTS------ 143

Query:   248 DDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL 307
                      G+ GE   L+L L+++ADVGL+GLPNAGKST + A++ A P IADYPFTTL
Sbjct:   144 ---------GEEGEARELKLELKLLADVGLLGLPNAGKSTFIHAVSKATPKIADYPFTTL 194

Query:   308 MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDA 367
              P+LG       +  E+Y S   +AD+PGLIEGA  G GLG  F             +D 
Sbjct:   195 YPHLG------VVRVEEYRS-FVIADIPGLIEGASEGAGLGVQFLKHLERTQLLLHIVDI 247

Query:   368 A---AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404
             A     +PV   + +  EL  ++ +  ++P  +V NKIDL
Sbjct:   248 APLDGSDPVQSIQAIISELEQFSQNLSQKPRWLVFNKIDL 287

GO:0008150 "biological_process" evidence=ND

GO:0005525 "GTP binding" evidence=ISS

UNIPROTKB|P71909 obg "GTPase obg" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 358 (131.1 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 98/241 (40%), Positives = 127/241 (52%)

Query:   179 RGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRM 238
             R G A   L + VP GTVV  + G+L +DL   G     A GGRGG+    +    RK  
Sbjct:    79 RDGAAGADLEVKVPEGTVVLDENGRLLADLVGAGTRFEAAAGGRGGLGNAALASRVRK-- 136

Query:   239 TTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPD 298
                             +LG+ G+   L L L+ VADVGLVG P+AGKS+L++AI+ AKP 
Sbjct:   137 -----------APGFALLGEKGQSRDLTLELKTVADVGLVGFPSAGKSSLVSAISAAKPK 185

Query:   299 IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXX 358
             IADYPFTTL+PNLG +      G   +    T+AD+PGLI GA  G+GLG +F       
Sbjct:   186 IADYPFTTLVPNLGVVSA----GEHAF----TVADVPGLIPGASRGRGLGLDFLRHIERC 237

Query:   359 XXXXXXIDAA-AE---NPVNDYRTVKEELRMYNP---------DYLERPFIVVLNKIDLP 405
                   +D A AE   +P++D   ++ EL  Y P         D   RP  VVLNKID+P
Sbjct:   238 AVLVHVVDCATAEPGRDPISDIDALETELACYTPTLQGDAALGDLAARPRAVVLNKIDVP 297

Query:   406 E 406
             E
Sbjct:   298 E 298

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005840 "ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0046777 "protein autophosphorylation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Sb01g004960.1	hypothetical protein (506 aa)
		(Sorghum bicolor)
Predicted Functional Partners:
	Sb04g009660.1	hypothetical protein; This protein binds to 23S rRNA (By similarity) (210 aa)	•						•		0.861
	Sb07g005640.1	hypothetical protein (146 aa)	•						•		0.820
	Sb09g025720.1	hypothetical protein (146 aa)	•						•		0.815
	Sb04g003970.1	hypothetical protein (562 aa)			•				•		0.780
	Sb07g020060.1	hypothetical protein (549 aa)							•		0.767
	Sb10g003070.1	hypothetical protein (665 aa)			•				•		0.745
	Sb03g044280.1	hypothetical protein (189 aa)	•						•		0.744
	Sb1824s002010.1	hypothetical protein (228 aa)	•						•		0.729
	Sb05g025430.1	hypothetical protein (685 aa)			•				•		0.729
	Sb09g028120.1	hypothetical protein; This protein binds to 23S rRNA (By similarity) (250 aa)	•						•		0.601

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	1e-106
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	1e-104
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	1e-102
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	5e-98
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	4e-85
PRK12296	500	PRK12296, obgE, GTPase CgtA; Reviewed	2e-80
cd01898	170	cd01898, Obg, Obg GTPase	1e-69
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	4e-39
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	2e-27
cd01899	318	cd01899, Ygr210, Ygr210 GTPase	9e-27
COG0012	372	COG0012, COG0012, Predicted GTPase, probable trans	9e-27
PRK09602	396	PRK09602, PRK09602, translation-associated GTPase;	4e-25
cd01896	233	cd01896, DRG, Developmentally Regulated GTP-bindin	1e-21
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	9e-21
cd00880	161	cd00880, Era_like, E	1e-19
PRK09601	364	PRK09601, PRK09601, GTP-binding protein YchF; Revi	2e-19
PTZ00258	390	PTZ00258, PTZ00258, GTP-binding protein; Provision	2e-19
pfam01018	156	pfam01018, GTP1_OBG, GTP1/OBG	6e-19
cd01900	274	cd01900, YchF, YchF GTPase	1e-18
PRK11058	426	PRK11058, PRK11058, GTPase HflX; Provisional	4e-14
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	5e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-13
COG1084	346	COG1084, COG1084, Predicted GTPase [General functi	7e-13
COG2262	411	COG2262, HflX, GTPases [General function predictio	2e-11
TIGR03156	351	TIGR03156, GTP_HflX, GTP-binding protein HflX	2e-11
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-11
cd01878	204	cd01878, HflX, HflX GTPase family	3e-10
TIGR00092	368	TIGR00092, TIGR00092, GTP-binding protein YchF	4e-09
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	7e-09
COG1159	298	COG1159, Era, GTPase [General function prediction	4e-08
cd04163	168	cd04163, Era, E	2e-07
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	9e-07
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	2e-06
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	2e-06
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	6e-06
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	7e-06
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	1e-05
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	4e-05
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	4e-05
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	5e-05
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	1e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	2e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-04
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	5e-04
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	0.002

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score =  319 bits (820), Expect = e-106
 Identities = 141/345 (40%), Positives = 187/345 (54%), Gaps = 70/345 (20%)

Query: 75  KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKR----DFDGSLI 130
            + D+  I V++GDGG G V                         SF+R       G   
Sbjct: 1   MFIDQAKIYVKAGDGGDGMV-------------------------SFRREKYVPKGG--- 32

Query: 131 LPMGG---HGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTL 187
            P GG    GG V+  ADEG  TLL+F  KR + A+ G N    G    +   G     L
Sbjct: 33  -PDGGDGGKGGSVIFVADEGLRTLLDFRYKRHFKAENGEN----G--MGKNMHGRNGEDL 85

Query: 188 RIPVPLGTVVK-HKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIM 246
            I VP+GTVVK  + G++ +DL  PG EV+VA+GGRGG           +      T+  
Sbjct: 86  IIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGG-----------RGNAHFATSTN 134

Query: 247 RDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT 306
           +    ++   G+ GEE  L L L+++ADVGLVG PN GKSTLL+ +++AKP IA+Y FTT
Sbjct: 135 Q--APRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTT 192

Query: 307 LMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV 364
           L+PNLG    D   +           +AD+PGLIEGA  G GLG  FLRH+ RTR++VHV
Sbjct: 193 LVPNLGVVETDDGRSF---------VMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHV 243

Query: 365 IDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
           ID +     +P+ DY  + +EL++YNP  LERP IVV NK+DLPE
Sbjct: 244 IDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE 288

Length = 424

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score =  312 bits (802), Expect = e-104
 Identities = 144/348 (41%), Positives = 189/348 (54%), Gaps = 82/348 (23%)

Query: 78  DRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKR----DFDGSLILPM 133
           D   I V++GDGG+G V                         SF+R       G    P 
Sbjct: 3   DEAKIFVKAGDGGNGCV-------------------------SFRREKYVPKGG----PD 33

Query: 134 ---GGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIP 190
              GG GG V++ ADE  +TLL+F  +R + A+ G N    G    + R G     L I 
Sbjct: 34  GGDGGRGGSVILEADENLNTLLDFRYQRHFKAENGEN----G--MGKNRTGKNGEDLVIK 87

Query: 191 VPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGI------SLLEVPENRRKRMTTLTT 243
           VP+GTVV     G+L +DL  PG   LVA+GGRGG+      S      NR  R  T   
Sbjct: 88  VPVGTVVYDADTGELLADLTEPGQRFLVAKGGRGGLGNAHFKS----STNRAPRFAT--- 140

Query: 244 NIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP 303
                        G+ GEE  L L L+++ADVGLVGLPNAGKSTL++A++ AKP IADYP
Sbjct: 141 ------------PGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYP 188

Query: 304 FTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLL 361
           FTTL+PNLG  R+D   +           +AD+PGLIEGA  G GLG  FL+H+ RTR+L
Sbjct: 189 FTTLVPNLGVVRVDDGRSF---------VIADIPGLIEGASEGAGLGHRFLKHIERTRVL 239

Query: 362 VHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
           +H+ID + E   +P+ DY  ++ EL+ Y+P+  E+P IVVLNKIDL +
Sbjct: 240 LHLIDISPEDGSDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score =  307 bits (790), Expect = e-102
 Identities = 140/349 (40%), Positives = 188/349 (53%), Gaps = 81/349 (23%)

Query: 75  KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD-F------DG 127
           K+ D   I V++GDGG+G V                         SF+R+ F      DG
Sbjct: 1   KFIDEAKIYVKAGDGGNGCV-------------------------SFRREKFIPFGGPDG 35

Query: 128 SLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTL 187
                 GG GG V++ ADE  +TL++F  KR + A+ G N    G    + R G +   L
Sbjct: 36  G----DGGRGGSVILEADENLNTLIDFRYKRHFKAENGEN----G--MGRNRTGKSGKDL 85

Query: 188 RIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGI------SLLEVPENRRKRMTT 240
            + VP+GT +     G+L +DL   G   LVA+GG+GG+      S      NR  R  T
Sbjct: 86  VLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKS----STNRAPRYAT 141

Query: 241 LTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIA 300
                           G+ GEE  L L L+++ADVGLVGLPNAGKSTL++A++ AKP IA
Sbjct: 142 ---------------PGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIA 186

Query: 301 DYPFTTLMPNLG---RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR 357
           DYPFTTL PNLG     D               +AD+PGLIEGA  G GLG  FL+H+ R
Sbjct: 187 DYPFTTLHPNLGVVRVDDYKSF----------VIADIPGLIEGASEGAGLGHRFLKHIER 236

Query: 358 TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
           TRLL+H++D  A +PV DY+T++ EL  Y+P+  ++P I+VLNKIDL +
Sbjct: 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285

Length = 335

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score =  297 bits (762), Expect = 5e-98
 Identities = 150/347 (43%), Positives = 195/347 (56%), Gaps = 74/347 (21%)

Query: 75  KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD-F------DG 127
           K+ D V I V++GDGG+G V                         SF+R+ F      DG
Sbjct: 2   KFVDEVKIEVKAGDGGNGCV-------------------------SFRREKFVPKGGPDG 36

Query: 128 SLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTL 187
                 GG GG V+  ADE  +TL++F  K+ + A+ G N   MG    + R G     L
Sbjct: 37  G----DGGRGGSVIFEADENLNTLIDFRYKKHFKAENGEN--GMG----RNRTGAKGKDL 86

Query: 188 RIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTN 244
            I VP+GTVV+    G+L +DL   G   LVA+GGRGG+  +  +   NR  R  T    
Sbjct: 87  VIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSVNRAPRFAT---- 142

Query: 245 IMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPF 304
                       G+ GEE  L L L+++ADVGLVGLPNAGKSTLL+A++ AKP IADYPF
Sbjct: 143 -----------PGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPF 191

Query: 305 TTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLV 362
           TTL+PNLG  R+DG  +           +AD+PGLIEGA  G GLG  FLRH+ RTR+L+
Sbjct: 192 TTLVPNLGVVRVDGGESF---------VVADIPGLIEGASEGVGLGLRFLRHIERTRVLL 242

Query: 363 HVIDAAAEN---PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
           HVID +  +   P+ DY+T++ EL  Y+P   E+P IVVLNKIDLP 
Sbjct: 243 HVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289

Length = 369

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score =  264 bits (678), Expect = 4e-85
 Identities = 130/345 (37%), Positives = 177/345 (51%), Gaps = 70/345 (20%)

Query: 75  KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDF-------DG 127
           K+ D   I V +GDGG+G V                         SF+R+        DG
Sbjct: 2   KFVDEAKIRVVAGDGGNGCV-------------------------SFRREKYIPKGGPDG 36

Query: 128 SLILPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTL 187
                 GG GGDV + ADE  +TL+++  +R + A+RG N    G    +   G     +
Sbjct: 37  G----DGGDGGDVYLEADENLNTLIDYRFERHFRAERGQN----G--QGRDCTGKRGKDI 86

Query: 188 RIPVPLGTVVK-HKRGKLFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTN 244
            I VP+GT V     G++  DL   G  +LVA+GG  G+  +  +   NR  R  T    
Sbjct: 87  TIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTP--- 143

Query: 245 IMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPF 304
                       G  GEE  L+L L+++ADVGL+GLPNAGKST + A++ AKP +ADYPF
Sbjct: 144 ------------GTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPF 191

Query: 305 TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV 364
           TTL+PNLG +  D             +AD+PGLIEGA  G GLG  FL+HL R R+L+H+
Sbjct: 192 TTLVPNLGVVRVDD-------ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHL 244

Query: 365 IDAA---AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
           ID A     +PV + R +  EL  Y+P   E+P  +V NKIDL +
Sbjct: 245 IDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289

Length = 390

>gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed

 Score =  255 bits (655), Expect = 2e-80
 Identities = 136/349 (38%), Positives = 180/349 (51%), Gaps = 76/349 (21%)

Query: 78  DRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD-F------DGSLI 130
           DRV++ V++GDGG+G                           S  R+ F      DG   
Sbjct: 6   DRVVLHVKAGDGGNGCA-------------------------SVHREKFKPLGGPDGG-- 38

Query: 131 LPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIP 190
              GG GG VV+  D    TLL+FH +    A  G     MG      R G A   L +P
Sbjct: 39  --NGGRGGSVVLVVDPQVTTLLDFHFRPHRKATNGKP--GMG----DNRDGAAGEDLVLP 90

Query: 191 VPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDT 250
           VP GTVV  + G++ +DL   G   + A GGRGG+    +    RK              
Sbjct: 91  VPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASKARK-------------A 137

Query: 251 DKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN 310
               +LG+ GEE  L L L+ VADVGLVG P+AGKS+L++A++ AKP IADYPFTTL+PN
Sbjct: 138 PGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPN 197

Query: 311 LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE 370
           LG +      G  ++    T+AD+PGLI GA  GKGLG +FLRH+ R  +LVHV+D A  
Sbjct: 198 LGVV----QAGDTRF----TVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATL 249

Query: 371 ----NPVNDYRTVKEELRMYNP---------DYLERPFIVVLNKIDLPE 406
               +P++D   ++ EL  Y P         D  ERP +VVLNKID+P+
Sbjct: 250 EPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298

Length = 500

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score =  217 bits (555), Expect = 1e-69
 Identities = 84/137 (61%), Positives = 102/137 (74%), Gaps = 12/137 (8%)

Query: 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEAT 330
           ADVGLVGLPNAGKSTLL+AI++AKP IADYPFTTL+PNLG  R+D   +           
Sbjct: 1   ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSF---------V 51

Query: 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPD 389
           +AD+PGLIEGA  GKGLG  FLRH+ RTR+L+HVID +  ++PV DY T++ EL  YNP 
Sbjct: 52  IADIPGLIEGASEGKGLGHRFLRHIERTRVLLHVIDLSGEDDPVEDYETIRNELEAYNPG 111

Query: 390 YLERPFIVVLNKIDLPE 406
             E+P IVVLNKIDL +
Sbjct: 112 LAEKPRIVVLNKIDLLD 128

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score =  137 bits (348), Expect = 4e-39
 Identities = 62/136 (45%), Positives = 86/136 (63%), Gaps = 12/136 (8%)

Query: 276 GLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDPTLGAEKYSSEATLADL 334
           GLVGLPN GKSTLL+A+T AK +IA YPFTTL PN+G  + GD          +  + DL
Sbjct: 1   GLVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVGVFEFGDGV--------DIQIIDL 52

Query: 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYL 391
           PGL++GA  G+GLG   L HL R+ L++HVIDA+ +   +P+ D +T+ EE+        
Sbjct: 53  PGLLDGASEGRGLGEQILAHLYRSDLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLK 112

Query: 392 ERPFIVVLNKIDLPEM 407
            +P ++V NKID+   
Sbjct: 113 NKPEMIVANKIDMASE 128

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score =  105 bits (263), Expect = 2e-27
 Identities = 55/131 (41%), Positives = 69/131 (52%), Gaps = 17/131 (12%)

Query: 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332
            V LVG PN GKSTL+ A+T AK  I +DYP TT          DP LG      +  L 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTR---------DPILGVLGLGRQIILV 51

Query: 333 DLPGLIEGAHLGKGLG--RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY 390
           D PGLIEGA  GKG+     FL  +R   L++ V+D A+E    D   + EEL       
Sbjct: 52  DTPGLIEGASEGKGVEGFNRFLEAIREADLILLVVD-ASEGLTEDDEEILEELEKLP--- 107

Query: 391 LERPFIVVLNK 401
            ++P I+VLNK
Sbjct: 108 -KKPIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206686 cd01899, Ygr210, Ygr210 GTPase

 Score =  108 bits (273), Expect = 9e-27
 Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLD-GDPTLGAEKYSSEA 329
           +GLVG PN GKST   A T A  +IA+YPFTT+ PN+G    R++     LG        
Sbjct: 1   IGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYG 60

Query: 330 T-----------LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-------- 370
                       L D+ GL+ GAH GKGLG  FL  LR   +L+HV+DA+          
Sbjct: 61  KCIDGKRYVPVELIDVAGLVPGAHEGKGLGNQFLDDLRDADVLIHVVDASGGTDAEGNGV 120

Query: 371 -----NPVNDYRTVKEELRMYNPDYLER 393
                +P+ D   ++ E+ M+    LER
Sbjct: 121 ETGGYDPLEDIEFLENEIDMWIYGILER 148

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. Length = 318

>gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

 Score =  109 bits (276), Expect = 9e-27
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 26/142 (18%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 327
           +G+VGLPN GKSTL  A+T A  +IA+YPF T+ PN+G       RLD    L       
Sbjct: 5   IGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLD---ELAEIVKCP 61

Query: 328 EAT------LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------N 371
                      D+ GL++GA  G+GLG  FL ++R    ++HV+    +          +
Sbjct: 62  PKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVD 121

Query: 372 PVNDYRTVKEELRMYNPDYLER 393
           PV D   +  EL +++ + LE+
Sbjct: 122 PVEDIEIINTELILWDLESLEK 143

Length = 372

>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed

 Score =  105 bits (265), Expect = 4e-25
 Identities = 55/148 (37%), Positives = 73/148 (49%), Gaps = 29/148 (19%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-----------RLDGDPTLGAE 323
           +GLVG PN GKST   A T A  +IA+YPFTT+ PN+G            L         
Sbjct: 4   IGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNG 63

Query: 324 KYSSE-----ATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----AE---- 370
           K           L D+ GL+ GAH G+GLG  FL  LR+   L+HV+DA+     E    
Sbjct: 64  KCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPV 123

Query: 371 -----NPVNDYRTVKEELRMYNPDYLER 393
                +PV D + ++EEL M+    LE+
Sbjct: 124 EPGSHDPVEDIKFLEEELDMWIYGILEK 151

Length = 396

>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG)

 Score = 92.6 bits (231), Expect = 1e-21
 Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 10/112 (8%)

Query: 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332
           A V LVG P+ GKSTLL+ +T+ K ++A Y FTTL    G ++     GA     +  L 
Sbjct: 1   ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVMEYK---GA-----KIQLL 52

Query: 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR 384
           DLPG+IEGA  GKG GR  +   R   L++ V+D  A  P      ++ EL 
Sbjct: 53  DLPGIIEGASDGKGRGRQVIAVARTADLILIVLD--ATKPEGQREILERELE 102

The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score = 92.7 bits (231), Expect = 9e-21
 Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 10/111 (9%)

Query: 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332
           A V LVG P+ GKSTLL  +T+ K ++ADYPFTTL P  G L+     GA     +  L 
Sbjct: 64  ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK---GA-----QIQLL 115

Query: 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEEL 383
           DLPG+IEGA  G+G GR  L   R   L++ V+D       +    ++ EL
Sbjct: 116 DLPGIIEGASSGRGRGRQVLSVARNADLIIIVLD--VFEDPHHRDIIEREL 164

Length = 365

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 84.6 bits (210), Expect = 1e-19
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 15/132 (11%)

Query: 276 GLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
            + G PN GKS+LL A+       ++  P TT  P          L          L D 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEW---ELLPLGPV----VLIDT 53

Query: 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 394
           PGL E   LG+       +   R  L++ V+D+       +       LR        +P
Sbjct: 54  PGLDEEGGLGRERVEEARQVADRADLVLLVVDSD--LTPVEEEAKLGLLR-----ERGKP 106

Query: 395 FIVVLNKIDLPE 406
            ++VLNKIDL  
Sbjct: 107 VLLVLNKIDLVP 118

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed

 Score = 88.6 bits (221), Expect = 2e-19
 Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 27/132 (20%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 327
            G+VGLPN GKSTL  A+T A  + A+YPF T+ PN+G       RLD    L AE    
Sbjct: 5   CGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLD---KL-AEIVKP 60

Query: 328 EATLA------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDA----------AAEN 371
           +  +       D+ GL++GA  G+GLG  FL ++R    +VHV+               +
Sbjct: 61  KKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVD 120

Query: 372 PVNDYRTVKEEL 383
           P+ D  T+  EL
Sbjct: 121 PIRDIETINTEL 132

Length = 364

>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 19/138 (13%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDPTL--------GAEKY 325
           +G+VGLPN GKST   A+   +    ++PF T+ PN  R++  D                
Sbjct: 24  MGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIV 83

Query: 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVND 375
            ++  + D+ GL++GA  G+GLG  FL H+R    + HV+ A  +          +PV D
Sbjct: 84  PAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRD 143

Query: 376 YRTVKEELRMYNPDYLER 393
              +  EL + + +++E+
Sbjct: 144 LEIISSELILKDLEFVEK 161

Length = 390

>gnl|CDD|110047 pfam01018, GTP1_OBG, GTP1/OBG

 Score = 82.8 bits (205), Expect = 6e-19
 Identities = 62/202 (30%), Positives = 85/202 (42%), Gaps = 58/202 (28%)

Query: 78  DRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDF-------DGSLI 130
           D+V I V +G+GG+G V                         SF+R+        DG   
Sbjct: 3   DQVEIYVAAGNGGNGCV-------------------------SFRREKYVPKGGPDGG-- 35

Query: 131 LPMGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIP 190
              GG GGDV+  ADE  DTLL+F  K+ + A+ G +        S+   G     L I 
Sbjct: 36  --NGGRGGDVIFEADENLDTLLDFRYKKHFKAEDGKHG------GSRNCHGKNGEDLVIK 87

Query: 191 VPLGTVVKHKRGK-LFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDD 249
           VP GTVV       L +DL H G  +L A+GG+GG+       N         + + R  
Sbjct: 88  VPPGTVVLDLDNGELLADLVHHGQRLLAAKGGKGGLG------NAA-----FKSPVNR-- 134

Query: 250 TDKVLVLGQHGEE--VSLELIL 269
                + G+ GEE  + LEL L
Sbjct: 135 APGYALNGEPGEERDIRLELKL 156

The N-terminal domain of B. subtilis GTPase obgE has the OBG fold, which is formed by three glycine-rich regions inserted into a small 8-stranded beta-sandwich these regions form six left-handed collagen-like helices packed and H-bonded together. Length = 156

>gnl|CDD|206687 cd01900, YchF, YchF GTPase

 Score = 84.8 bits (211), Expect = 1e-18
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 27/134 (20%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 327
           +G+VGLPN GKSTL  A+T +  + A+YPF T+ PN+G       RLD    L AE    
Sbjct: 1   IGIVGLPNVGKSTLFNALTKSNAEAANYPFCTIEPNVGIVPVPDERLD---KL-AEIVKP 56

Query: 328 E----ATL--ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------N 371
           +    AT+   D+ GL++GA  G+GLG  FL H+R    + HV+    +          +
Sbjct: 57  KKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVD 116

Query: 372 PVNDYRTVKEELRM 385
           PV D   +  EL +
Sbjct: 117 PVRDIEIINTELIL 130

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. Length = 274

>gnl|CDD|182934 PRK11058, PRK11058, GTPase HflX; Provisional

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 64/155 (41%), Positives = 75/155 (48%), Gaps = 28/155 (18%)

Query: 270 RVVAD---VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS 326
           R+ AD   V LVG  NAGKSTL   IT A+   AD  F TL P L R+D           
Sbjct: 192 RIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV------- 244

Query: 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR---LLVHVIDAA----AENPVNDYRTV 379
            E  LAD  G I   HL   L   F   L+ TR   LL+HV+DAA     EN +    TV
Sbjct: 245 GETVLADTVGFIR--HLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQEN-IEAVNTV 301

Query: 380 KEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSR 414
            EE+     D  E P ++V+NKID   M DD   R
Sbjct: 302 LEEI-----DAHEIPTLLVMNKID---MLDDFEPR 328

Length = 426

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 66.4 bits (163), Expect = 5e-13
 Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 46/152 (30%)

Query: 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336
           + G PN GKS+L+  +T AKP++A YPFTT    +G  D        ++     + D PG
Sbjct: 5   IAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD----YKYLRWQ----VIDTPG 56

Query: 337 LIEGAHLGKGLGRNF-------------LRHLRRTRLLVHVIDAA------AENPVNDYR 377
           +         L R               L HLR    ++  ID +       E  ++ ++
Sbjct: 57  I---------LDRPLEERNTIEMQAITALAHLRAA--VLFFIDPSETCGYSIEEQLSLFK 105

Query: 378 TVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409
            +K            +P IVVLNKIDL    D
Sbjct: 106 EIKPL--------FNKPVIVVLNKIDLLTEED 129

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 65.9 bits (161), Expect = 6e-13
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 17/134 (12%)

Query: 276 GLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
            +VG    GKS+LL A+   +    +D P TT  P++           +K   +  L D 
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYV------KELDKGKVKLVLVDT 54

Query: 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER- 393
           PGL E   L  G        LR   L++ V+D+       D  + ++   +      +  
Sbjct: 55  PGLDEFGGL--GREELARLLLRGADLILLVVDS------TDRESEEDAKLLILRRLRKEG 106

Query: 394 -PFIVVLNKIDLPE 406
            P I+V NKIDL E
Sbjct: 107 IPIILVGNKIDLLE 120

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction only]

 Score = 68.9 bits (169), Expect = 7e-13
 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 38/143 (26%)

Query: 279 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 338
           G PN GKS+L+  +T AKP++A YPFTT   ++G  +     G  +      + D PGL 
Sbjct: 175 GYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE----RGYLRIQ----VIDTPGL- 225

Query: 339 EGAHLGKGLGRNF-------------LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM 385
                   L R               LRHL    +++ + D +         +++E++ +
Sbjct: 226 --------LDRPLEERNEIERQAILALRHLA--GVILFLFDPSETC----GYSLEEQISL 271

Query: 386 YNP--DYLERPFIVVLNKIDLPE 406
                +  + P +VV+NKID+ +
Sbjct: 272 LEEIKELFKAPIVVVINKIDIAD 294

Length = 346

>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only]

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 49/135 (36%), Positives = 59/135 (43%), Gaps = 18/135 (13%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSE--ATLA 332
           V LVG  NAGKSTL  A+T A   +AD  F TL         DPT    +        L 
Sbjct: 195 VALVGYTNAGKSTLFNALTGADVYVADQLFATL---------DPTTRRIELGDGRKVLLT 245

Query: 333 DLPGLIEGAHLGKGLGRNFLRHLRRT---RLLVHVIDAAAENPVNDYRTVKEELRMYNPD 389
           D  G I    L   L   F   L       LL+HV+DA+    +     V++ L     D
Sbjct: 246 DTVGFIR--DLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD 303

Query: 390 YLERPFIVVLNKIDL 404
             E P I+VLNKIDL
Sbjct: 304 --EIPIILVLNKIDL 316

Length = 411

>gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX

 Score = 64.8 bits (159), Expect = 2e-11
 Identities = 52/136 (38%), Positives = 61/136 (44%), Gaps = 20/136 (14%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
           V LVG  NAGKSTL  A+T A    AD  F TL P   RLD  P  G      E  L D 
Sbjct: 192 VALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLD-LPDGG------EVLLTDT 244

Query: 335 PGLIEGAHLGKGLGRNFLRHLRRTR---LLVHVIDAAAENPVNDYRTVK---EELRMYNP 388
            G I    L   L   F   L   R   LL+HV+DA+  +       V+   EEL     
Sbjct: 245 VGFIR--DLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA--- 299

Query: 389 DYLERPFIVVLNKIDL 404
              + P ++V NKIDL
Sbjct: 300 --EDIPQLLVYNKIDL 313

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 34/134 (25%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATL 331
           + +VG PN GKSTLL  +   K  I    P TT          DG              L
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYK--------FNL 55

Query: 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL 391
            D  G  +   + +   R     LR   +++ V+D   E      + +            
Sbjct: 56  LDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLD-VEEILEKQTKEIIHHAES------ 108

Query: 392 ERPFIVVLNKIDLP 405
             P I+V NKIDL 
Sbjct: 109 GVPIILVGNKIDLR 122

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206666 cd01878, HflX, HflX GTPase family

 Score = 59.0 bits (144), Expect = 3e-10
 Identities = 50/135 (37%), Positives = 60/135 (44%), Gaps = 18/135 (13%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS--EATLA 332
           V LVG  NAGKSTL  A+T A     D  F TL         DPT    K     E  L 
Sbjct: 44  VALVGYTNAGKSTLFNALTGADVLAEDQLFATL---------DPTTRRIKLPGGREVLLT 94

Query: 333 DLPGLIEGAHLGKGLGRNF---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 389
           D  G I    L   L   F   L  +    LL+HV+DA+  +      TV+E L+     
Sbjct: 95  DTVGFIR--DLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDREEQIETVEEVLK--ELG 150

Query: 390 YLERPFIVVLNKIDL 404
             + P I+VLNKIDL
Sbjct: 151 ADDIPIILVLNKIDL 165

HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204

>gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 20/128 (15%)

Query: 276 GLVGLPNAGKSTLLAAITHA-KPDIADYPFTTLMPNLGRLD-GDPTLG--AEKYSSEATL 331
           G+VGLPN GKSTL AA T+    + A+ PFTT+ PN G ++  DP L   A     E   
Sbjct: 6   GIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVP 65

Query: 332 A------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHV----------IDAAAENPVND 375
                  D+ GL+ GA  G+GLG  FL ++R   ++ HV               ++P +D
Sbjct: 66  PTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDD 125

Query: 376 YRTVKEEL 383
           +  + EEL
Sbjct: 126 FEIIDEEL 133

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor [Unknown function, General]. Length = 368

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 17/132 (12%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333
           V ++G PN GKSTLL  +   K  I +    TT      R+ G  T GA    S+    D
Sbjct: 3   VAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN----RISGIHTTGA----SQIIFID 54

Query: 334 LPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE 392
            PG  E  H L + + +     +    L++ V+D+   N   D   V  +L+      L+
Sbjct: 55  TPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--DGEFVLTKLQN-----LK 107

Query: 393 RPFIVVLNKIDL 404
           RP ++  NK+D 
Sbjct: 108 RPVVLTRNKLDN 119

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 16/132 (12%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333
           V ++G PN GKSTLL A+   K  I +  P TT      R+ G  T      +++    D
Sbjct: 9   VAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN----RIRGIVTTD----NAQIIFVD 60

Query: 334 LPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE 392
            PG+ +  H LG+ + +     L+   L++ V+DA       D   + E+L+       +
Sbjct: 61  TPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLK-----KTK 114

Query: 393 RPFIVVLNKIDL 404
            P I+V+NKID 
Sbjct: 115 TPVILVVNKIDK 126

Length = 298

>gnl|CDD|206726 cd04163, Era, E

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 30/139 (21%)

Query: 275 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRL-DGDPTLGAEKYS 326
           V ++G PN GKSTLL        +I   KP       TT     G   D D         
Sbjct: 6   VAIIGRPNVGKSTLLNALVGQKISIVSPKPQ------TTRNRIRGIYTDDD--------- 50

Query: 327 SEATLADLPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM 385
           ++    D PG+ +    LG+ + +     L+   L++ V+DA+      D   + E L+ 
Sbjct: 51  AQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGD-EFILELLK- 108

Query: 386 YNPDYLERPFIVVLNKIDL 404
                 + P I+VLNKIDL
Sbjct: 109 ----KSKTPVILVLNKIDL 123

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 50.2 bits (121), Expect = 9e-07
 Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 22/137 (16%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331
           +G+ G  NAGKS+L+ A+T    DIA   D P TT  P    ++  P LG         L
Sbjct: 9   IGIFGRRNAGKSSLINALT--GQDIAIVSDVPGTTTDPVYKAMELLP-LGP------VVL 59

Query: 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL 391
            D  GL +   LG+         L +T L + V+DA    P      + EEL+       
Sbjct: 60  IDTAGLDDEGELGELRVEKTREVLDKTDLALLVVDAGVG-PGEYELELIEELK------- 111

Query: 392 ER--PFIVVLNKIDLPE 406
           ER  P+IVV+NKIDL E
Sbjct: 112 ERKIPYIVVINKIDLGE 128

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 21/141 (14%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLG-AEKYSSEATLA 332
           V +VG PN GKSTL   +T  +  I +D P  T      R   D   G AE    E  L 
Sbjct: 6   VAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVT------R---DRIYGDAEWLGREFILI 56

Query: 333 DLPGLIEGA--HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPD 389
           D  GL +G    L + +    L  +    +++ V+D      +      + + LR     
Sbjct: 57  DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG--ITPADEEIAKILR----- 109

Query: 390 YLERPFIVVLNKIDLPEMYDD 410
             ++P I+V+NKID  +  + 
Sbjct: 110 RSKKPVILVVNKIDNLKAEEL 130

Length = 444

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 28/147 (19%)

Query: 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333
            V LVG PN GK+TL  A+T A   + ++P  T+    G+L        +    E  + D
Sbjct: 5   TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKL--------KYKGHEIEIVD 56

Query: 334 LPGL--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDY 390
           LPG   +      + + R+FL    +  L+V+V+DA   N   N Y T+  +L       
Sbjct: 57  LPGTYSLTAYSEDEKVARDFLL-EGKPDLIVNVVDAT--NLERNLYLTL--QLLE----- 106

Query: 391 LERPFIVVLNKIDLPEMYDDSSSRQGI 417
           L  P I+ LN ID  +       ++GI
Sbjct: 107 LGIPMILALNMIDEAK-------KRGI 126

Length = 653

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 47.9 bits (115), Expect = 6e-06
 Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 55/185 (29%)

Query: 246 MRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIA---DY 302
           +  + D++L   + G+      ILR    V ++G PN GKS+LL A+     D A   D 
Sbjct: 197 LIAELDELLATAKQGK------ILREGLKVVIIGRPNVGKSSLLNALLGR--DRAIVTDI 248

Query: 303 PFTTLMPNLGR--------LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 354
             TT      R        L+G P            L D  G+ E   + + +G      
Sbjct: 249 AGTT------RDVIEEDINLNGIPVR----------LVDTAGIRETDDVVERIG------ 286

Query: 355 LRRTR-------LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407
           + R +       L++ V+DA+           KE+L +      ++P IVVLNK DL   
Sbjct: 287 IERAKKAIEEADLVLFVLDASQPLD-------KEDLALIELLPKKKPIIVVLNKADLVSK 339

Query: 408 YDDSS 412
            +  S
Sbjct: 340 IELES 344

Length = 454

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 16/133 (12%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
           + ++G    GK+TLL  +   +     YP T    +  +     T+   + + +  L D 
Sbjct: 8   IVVLGDGGVGKTTLLNRLVGDEFPE-GYPPTIGNLDPAK-----TIEPYRRNIKLQLWDT 61

Query: 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLER 393
            G  E   L     R           ++ V D+      ++      EELR   PD +  
Sbjct: 62  AGQEEYRSLRPEYYRG-------ANGILIVYDSTLRESSDELTEEWLEELRELAPDDV-- 112

Query: 394 PFIVVLNKIDLPE 406
           P ++V NKIDL +
Sbjct: 113 PILLVGNKIDLFD 125

Length = 219

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 46.2 bits (111), Expect = 1e-05
 Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 28/138 (20%)

Query: 275 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS 327
           V +VG PN GKSTLL        +I   KP       TT     G +  D          
Sbjct: 8   VAIVGRPNVGKSTLLNALVGQKISIVSPKPQ------TTRHRIRGIVTEDDA-------- 53

Query: 328 EATLADLPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 386
           +    D PG+ +    L + + +     L+   L++ V+D A E        + E+L+  
Sbjct: 54  QIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVD-ADEKIGPGDEFILEKLKKV 112

Query: 387 NPDYLERPFIVVLNKIDL 404
                  P I+VLNKIDL
Sbjct: 113 K-----TPVILVLNKIDL 125

Length = 292

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 28/149 (18%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
           + LVG PN GK+TL  A+T A+  + ++P  T+    G               E  + DL
Sbjct: 3   IALVGNPNVGKTTLFNALTGARQHVGNWPGVTVEKKEGTFKYKGY--------EIEIVDL 54

Query: 335 PGL--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV-NDYRTVKEELRMYNPDYL 391
           PG   +      + + R++L    +  ++++V+DA   N   N Y T+  +L       L
Sbjct: 55  PGTYSLSPYSEEEKVARDYLLE-EKPDVIINVVDAT--NLERNLYLTL--QLLE-----L 104

Query: 392 ERPFIVVLNKIDLPEMYDDSSSRQGIGFN 420
             P +V LN +D  E       ++GI  +
Sbjct: 105 GIPVVVALNMMDEAE-------KKGIKID 126

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)

Query: 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336
           LVG PN GK+TL  A+T A+  + ++P  T+    G          +    E  + DLPG
Sbjct: 2   LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGEF--------KLGGKEIEIVDLPG 53

Query: 337 L--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRT--VKEELRMYNPDYL 391
              +      + + R+FL       L+V+V+DA   N   N Y T  + E         L
Sbjct: 54  TYSLTPYSEDEKVARDFLLG-EEPDLIVNVVDAT--NLERNLYLTLQLLE---------L 101

Query: 392 ERPFIVVLNKIDL 404
             P +V LN ID 
Sbjct: 102 GLPVVVALNMIDE 114

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 31/140 (22%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADY---PFTTLMPNLGRLDGDPTLGAEKYSSEATL 331
           V   G  N GKS+L+ A+T+ K  +A     P  T + N   +                L
Sbjct: 2   VAFAGRSNVGKSSLINALTNRK-KLARTSKTPGRTQLINFFNVGDK-----------FRL 49

Query: 332 ADLPGLIEGAHLGK-------GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR 384
            DLPG    A + K        L   +L +    + +V +IDA        +     +L 
Sbjct: 50  VDLPGYG-YAKVSKEVREKWGKLIEEYLENRENLKGVVLLIDA-------RHGPTPIDLE 101

Query: 385 MYN-PDYLERPFIVVLNKID 403
           M    + L  PF++VL K D
Sbjct: 102 MLEFLEELGIPFLIVLTKAD 121

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 45/162 (27%), Positives = 60/162 (37%), Gaps = 54/162 (33%)

Query: 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGR--------LDGD 317
           ++VV    + G PN GKS+LL A+  A  D A   D   TT      R        L G 
Sbjct: 4   IKVV----IAGKPNVGKSSLLNAL--AGRDRAIVSDIAGTT------RDVIEEEIDLGGI 51

Query: 318 PTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR-------LLVHVIDAAAE 370
           P            L D  GL E     + +G      + R R       L++ V+DA+  
Sbjct: 52  PV----------RLIDTAGLRETEDEIEKIG------IERAREAIEEADLVLLVVDASEG 95

Query: 371 NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSS 412
                     EE         ++P IVVLNK DL    +  S
Sbjct: 96  LD--------EEDLEILELPAKKPVIVVLNKSDLLSDAEGIS 129

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 44/162 (27%), Positives = 61/162 (37%), Gaps = 66/162 (40%)

Query: 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGR--------LDGD 317
           L+VV    + G PN GKS+LL A+     + A   D   TT      R        LDG 
Sbjct: 216 LKVV----IAGRPNVGKSSLLNAL--LGEERAIVTDIAGTT------RDVIEEHINLDGI 263

Query: 318 PTLGAEKYSSEATLADLPGL------IEGAHLGKGLGRNFLRHLRRTR-------LLVHV 364
           P            L D  G+      +E   +G          + R+R       L++ V
Sbjct: 264 PL----------RLIDTAGIRETDDEVE--KIG----------IERSREAIEEADLVLLV 301

Query: 365 IDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
           +DA+      D     +E+     D   +P IVVLNK DL  
Sbjct: 302 LDASEPLTEED-----DEILEELKD---KPVIVVLNKADLTG 335

Length = 449

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 36/140 (25%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG-------AEKYSS 327
           V L+GL +AGKSTLL  + HA+        TT+          PT+G        EK+ S
Sbjct: 2   VLLLGLDSAGKSTLLYKLKHAE------LVTTI----------PTVGFNVEMLQLEKHLS 45

Query: 328 EATLADLPGLIEGAHLGKGLGRNFLRH-LRRTRLLVHVIDAAAENPVND-YRTVKEELRM 385
             T+ D+         G+   R   +  L  T  LV+V+D++ E  +++  + +K  L+ 
Sbjct: 46  -LTVWDVG--------GQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILK- 95

Query: 386 YNPDYLERPFIVVLNKIDLP 405
            N      P +++ NK DLP
Sbjct: 96  -NEHIKGVPVVLLANKQDLP 114

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 35/140 (25%), Positives = 50/140 (35%), Gaps = 31/140 (22%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331
           +   G  N GKS+L+ A+T+ K ++A     P  T + N   +D       E       L
Sbjct: 27  IAFAGRSNVGKSSLINALTNQK-NLARTSKTPGRTQLINFFEVDD------ELR-----L 74

Query: 332 ADLPG-------LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR 384
            DLPG               K +   +L      + +V +IDA              +  
Sbjct: 75  VDLPGYGYAKVPKEVKEKWKKLIEE-YLEKRANLKGVVLLIDARHP-------PKDLDRE 126

Query: 385 MYN-PDYLERPFIVVLNKID 403
           M      L  P IVVL K D
Sbjct: 127 MIEFLLELGIPVIVVLTKAD 146

Length = 200

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 28/143 (19%), Positives = 45/143 (31%), Gaps = 29/143 (20%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA-- 332
           VG++G  + GK+TL  ++ +    I              LD          + +  +   
Sbjct: 2   VGVIGHVDHGKTTLTGSLLYQTGAIDR----RGTRKETFLDTLKEERERGITIKTGVVEF 57

Query: 333 ----------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEE 382
                     D PG     H  +   +  +R L +    + V+D A E      R     
Sbjct: 58  EWPKRRINFIDTPG-----H--EDFSKETVRGLAQADGALLVVD-ANEGVEPQTREHLNI 109

Query: 383 LRMYNPDYLERPFIVVLNKIDLP 405
                      P IV +NKID  
Sbjct: 110 ALAGGL-----PIIVAVNKIDRV 127

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
COG0536	369	Obg Predicted GTPase [General function prediction	100.0
PRK12299	335	obgE GTPase CgtA; Reviewed	100.0
PRK12297	424	obgE GTPase CgtA; Reviewed	100.0
PRK12296	500	obgE GTPase CgtA; Reviewed	100.0
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	100.0
PRK12298	390	obgE GTPase CgtA; Reviewed	100.0
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	100.0
PF01018	156	GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several pr	100.0
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.86
COG1084	346	Predicted GTPase [General function prediction only	99.84
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.84
PTZ00258	390	GTP-binding protein; Provisional	99.83
COG1163	365	DRG Predicted GTPase [General function prediction	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
PRK09601	364	GTP-binding protein YchF; Reviewed	99.81
PRK09602	396	translation-associated GTPase; Reviewed	99.81
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.8
COG2262	411	HflX GTPases [General function prediction only]	99.8
COG0486	454	ThdF Predicted GTPase [General function prediction	99.79
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.78
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.78
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.78
PRK11058	426	GTPase HflX; Provisional	99.77
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.77
COG1159	298	Era GTPase [General function prediction only]	99.77
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.75
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	99.74
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.73
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.71
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	99.7
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.69
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.69
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.69
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.66
PRK03003	472	GTP-binding protein Der; Reviewed	99.65
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.65
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.65
PRK00089	292	era GTPase Era; Reviewed	99.64
PRK00093	435	GTP-binding protein Der; Reviewed	99.64
COG1160	444	Predicted GTPases [General function prediction onl	99.64
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.64
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.64
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.62
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.62
PRK15494	339	era GTPase Era; Provisional	99.61
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.61
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.6
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.6
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.6
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.6
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.6
PRK00093	435	GTP-binding protein Der; Reviewed	99.59
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.59
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.59
PRK03003	472	GTP-binding protein Der; Reviewed	99.59
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.58
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.58
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.58
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.57
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.57
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.57
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.57
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.57
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.57
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.56
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.56
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.56
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.56
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.56
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.55
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.55
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.55
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.55
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.55
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.55
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.55
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.55
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.54
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.54
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.54
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.54
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.54
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.54
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.54
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.54
COG0218	200	Predicted GTPase [General function prediction only	99.54
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.54
PRK04213	201	GTP-binding protein; Provisional	99.53
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.53
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.53
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.53
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.53
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.52
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.52
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.52
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.52
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.52
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.52
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.51
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.51
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.51
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.51
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.51
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.51
cd00881	189	GTP_translation_factor GTP translation factor fami	99.51
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.51
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.51
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.5
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.5
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.5
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.5
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.5
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.5
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.5
PLN00223	181	ADP-ribosylation factor; Provisional	99.49
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.49
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.49
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.49
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.48
KOG0410	410	consensus Predicted GTP binding protein [General f	99.48
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.48
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.48
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.48
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.48
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.48
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.47
PTZ00133	182	ADP-ribosylation factor; Provisional	99.47
PLN03118	211	Rab family protein; Provisional	99.47
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.47
PLN03110	216	Rab GTPase; Provisional	99.46
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.46
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.46
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.46
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.45
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.45
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.45
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.45
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.45
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.44
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.44
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.44
PTZ00369	189	Ras-like protein; Provisional	99.44
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.44
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.43
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.43
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.43
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.43
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.42
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.42
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.42
PLN03108	210	Rab family protein; Provisional	99.41
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.41
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.41
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.41
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.41
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.4
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.4
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.4
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.4
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.4
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.39
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.39
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.39
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.38
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.38
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.38
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.38
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.37
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.37
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.37
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.37
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.36
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.36
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.36
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.35
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.35
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.33
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.33
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.33
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.32
COG3596	296	Predicted GTPase [General function prediction only	99.32
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.32
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.31
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.31
CHL00071	409	tufA elongation factor Tu	99.3
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.3
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.3
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.3
PRK12317	425	elongation factor 1-alpha; Reviewed	99.29
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.29
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.29
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.29
PRK05306	787	infB translation initiation factor IF-2; Validated	99.29
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.28
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.28
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.28
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.26
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.25
CHL00189	742	infB translation initiation factor 2; Provisional	99.25
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.25
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.25
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.24
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.24
PLN03127	447	Elongation factor Tu; Provisional	99.24
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.24
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.22
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.22
PRK00007	693	elongation factor G; Reviewed	99.22
PRK12739	691	elongation factor G; Reviewed	99.22
PRK12736	394	elongation factor Tu; Reviewed	99.21
PRK12735	396	elongation factor Tu; Reviewed	99.2
PLN00023	334	GTP-binding protein; Provisional	99.2
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.2
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.2
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.19
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.19
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.18
PRK00049	396	elongation factor Tu; Reviewed	99.18
PRK09866	741	hypothetical protein; Provisional	99.18
PRK10218	607	GTP-binding protein; Provisional	99.17
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.17
PLN03126	478	Elongation factor Tu; Provisional	99.16
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.16
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.15
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.15
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.15
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.15
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.14
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.14
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.14
COG1100	219	GTPase SAR1 and related small G proteins [General	99.13
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.12
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.12
PRK04004	586	translation initiation factor IF-2; Validated	99.1
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.1
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.1
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.1
PRK05433	600	GTP-binding protein LepA; Provisional	99.09
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.09
KOG0394	210	consensus Ras-related GTPase [General function pre	99.08
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.08
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.08
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.06
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.05
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.05
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.05
PRK13351	687	elongation factor G; Reviewed	99.05
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.04
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.04
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.04
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.03
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.01
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.01
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.0
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.0
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.98
KOG0090	238	consensus Signal recognition particle receptor, be	98.96
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.96
COG2229	187	Predicted GTPase [General function prediction only	98.95
PTZ00416	836	elongation factor 2; Provisional	98.94
PTZ00141	446	elongation factor 1- alpha; Provisional	98.93
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.89
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.89
PRK13768	253	GTPase; Provisional	98.87
PRK12740	668	elongation factor G; Reviewed	98.87
KOG0395	196	consensus Ras-related GTPase [General function pre	98.85
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.8
PRK07560	731	elongation factor EF-2; Reviewed	98.8
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	98.79
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.78
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.77
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	98.76
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.73
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.73
PLN00043	447	elongation factor 1-alpha; Provisional	98.73
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	98.72
KOG1145	683	consensus Mitochondrial translation initiation fac	98.67
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.65
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	98.65
COG1161	322	Predicted GTPases [General function prediction onl	98.64
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.62
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.6
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.59
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.58
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.58
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.58
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.57
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.56
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.55
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.54
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	98.51
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.5
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	98.5
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.46
PRK13796	365	GTPase YqeH; Provisional	98.42
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.4
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.37
KOG2486	320	consensus Predicted GTPase [General function predi	98.36
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.34
KOG4252	246	consensus GTP-binding protein [Signal transduction	98.33
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.32
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.32
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.3
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.3
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.29
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.27
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.27
PTZ00099	176	rab6; Provisional	98.26
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.25
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	98.25
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.24
cd03112	158	CobW_like The function of this protein family is u	98.23
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.18
PRK14845	1049	translation initiation factor IF-2; Provisional	98.18
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	98.16
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.16
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.16
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.14
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.14
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	98.14
PRK12288	347	GTPase RsgA; Reviewed	98.1
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.09
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.07
PRK12289	352	GTPase RsgA; Reviewed	98.06
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.06
KOG2484	435	consensus GTPase [General function prediction only	98.03
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.0
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.0
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.0
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.98
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.82
PRK00098	298	GTPase RsgA; Reviewed	97.81
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	97.79
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.79
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.73
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	97.72
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.63
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	97.63
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.62
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.58
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.57
cd03114	148	ArgK-like The function of this protein family is u	97.56
KOG1673	205	consensus Ras GTPases [General function prediction	97.56
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.56
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.54
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.47
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.46
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.45
KOG0467	887	consensus Translation elongation factor 2/ribosome	97.42
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.42
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	97.4
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.35
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.31
PRK10416	318	signal recognition particle-docking protein FtsY;	97.31
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.31
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.3
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.23
COG1162	301	Predicted GTPases [General function prediction onl	97.23
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.21
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.19
KOG1533	290	consensus Predicted GTPase [General function predi	97.16
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.14
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.11
COG0523	323	Putative GTPases (G3E family) [General function pr	97.06
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.05
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	97.04
KOG0460	449	consensus Mitochondrial translation elongation fac	97.04
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.03
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.01
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.97
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	96.97
PRK11537	318	putative GTP-binding protein YjiA; Provisional	96.94
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	96.88
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.85
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.83
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.83
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.8
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.76
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.73
KOG1143	591	consensus Predicted translation elongation factor	96.72
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	96.71
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.69
PRK01889	356	GTPase RsgA; Reviewed	96.65
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.65
COG3523	1188	IcmF Type VI protein secretion system component Va	96.64
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	96.64
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.56
PF00004	132	AAA: ATPase family associated with various cellula	96.56
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	96.54
cd03111	106	CpaE_like This protein family consists of proteins	96.54
cd02036	179	MinD Bacterial cell division requires the formatio	96.53
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.52
PRK09563	287	rbgA GTPase YlqF; Reviewed	96.49
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.46
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.44
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.39
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.37
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.36
PRK14974	336	cell division protein FtsY; Provisional	96.35
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.33
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.33
KOG3887	347	consensus Predicted small GTPase involved in nucle	96.31
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.31
cd03110	179	Fer4_NifH_child This protein family's function is	96.26
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	96.15
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.13
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	96.1
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.0
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	95.98
KOG0466	466	consensus Translation initiation factor 2, gamma s	95.97
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	95.96
PRK12289	352	GTPase RsgA; Reviewed	95.92
PRK00098	298	GTPase RsgA; Reviewed	95.89
KOG2484	435	consensus GTPase [General function prediction only	95.88
PRK14737	186	gmk guanylate kinase; Provisional	95.84
PRK10867	433	signal recognition particle protein; Provisional	95.69
PRK13695	174	putative NTPase; Provisional	95.63
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	95.47
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	95.38
TIGR00959	428	ffh signal recognition particle protein. This mode	95.35
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.29
PRK00300	205	gmk guanylate kinase; Provisional	95.2
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	95.19
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	95.18
PRK13796	365	GTPase YqeH; Provisional	94.8
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	94.75
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.75
PRK14738	206	gmk guanylate kinase; Provisional	94.71
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	94.37
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.3
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	94.3
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	94.01
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	93.96
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	93.89
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	93.84
KOG4181	491	consensus Uncharacterized conserved protein [Funct	93.75
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	93.73
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	93.7
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	93.61
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	93.58
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	93.46
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.45
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	93.43
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	93.41
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	93.41
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.39
COG4559	259	ABC-type hemin transport system, ATPase component	93.38
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	93.36
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	93.33
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	93.32
PRK12288	347	GTPase RsgA; Reviewed	93.32
KOG2423	572	consensus Nucleolar GTPase [General function predi	93.31
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	93.3
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	93.28
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	93.28
PRK07261	171	topology modulation protein; Provisional	93.27
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	93.26
KOG0780	483	consensus Signal recognition particle, subunit Srp	93.25
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	93.25
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	93.24
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	93.23
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	93.23
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	93.19
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	93.18
KOG0082	354	consensus G-protein alpha subunit (small G protein	93.13
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	93.1
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	93.07
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	93.05
cd03269	210	ABC_putative_ATPase This subfamily is involved in	93.05
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.03
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	93.03
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	93.01
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	92.98
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	92.98
PRK01889	356	GTPase RsgA; Reviewed	92.97
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	92.92
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	92.92
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	92.91
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	92.9
PRK08118	167	topology modulation protein; Reviewed	92.9
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	92.9
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	92.89
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	92.88
cd03216	163	ABC_Carb_Monos_I This family represents the domain	92.86
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	92.84
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	92.83
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	92.81
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	92.81
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	92.8
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	92.76
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	92.74
smart00382	148	AAA ATPases associated with a variety of cellular	92.72
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	92.68
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	92.68
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	92.66
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	92.65

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=100.00  E-value=3.4e-84  Score=635.66  Aligned_cols=293  Identities=48%  Similarity=0.782  Sum_probs=273.3

Q ss_pred             CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhh
Q 014655           74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE  153 (421)
Q Consensus        74 ~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~  153 (421)
                      ++|+|+++|+|+||+|||||||              ||||||    +++||||||    |||+||||||+||++++||.+
T Consensus         1 m~FvD~~~I~v~aG~GGnG~VS--------------FrREK~----vp~GGPdGG----dGG~GGsV~~~ad~~l~TL~d   58 (369)
T COG0536           1 MKFVDEVKIEVKAGDGGNGCVS--------------FRREKF----VPKGGPDGG----DGGRGGSVIFEADENLNTLID   58 (369)
T ss_pred             CCcceEEEEEEEecCCCCeeEE--------------EEhhhc----CccCCCCCC----CCCCCceEEEEEcCCcccHhh
Confidence            5899999999999999999997              788988    689999998    999999999999999999999


Q ss_pred             ccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEecc-CceeeccCCCCceEEEecCCCCCCCCCCcch
Q 014655          154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGISLLEVPE  232 (421)
Q Consensus       154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~~~-~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~  232 (421)
                      |+++++|+|++|+||.      +++++|++|+|++|+||+||+|+|.+ +++++||++++|++++|+||+||+||.+|++
T Consensus        59 ~r~~~~f~A~~G~~G~------~~~~~G~~G~Dl~i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks  132 (369)
T COG0536          59 FRYKKHFKAENGENGM------GRNRTGAKGKDLVIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKS  132 (369)
T ss_pred             hccceEEEccCCCCCC------CCCCCCCCCCceEEEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcC
Confidence            9999999999999986      47899999999999999999999975 8999999999999999999999999998765


Q ss_pred             hhhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce
Q 014655          233 NRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG  312 (421)
Q Consensus       233 ~~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g  312 (421)
                      +             .+++|++++.|++||++.+.||||.+++|+|||+|||||||||+++++++|+|++|||||+.|++|
T Consensus       133 ~-------------~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG  199 (369)
T COG0536         133 S-------------VNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG  199 (369)
T ss_pred             c-------------ccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc
Confidence            3             246788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC---CChhhHHHHHHHHHhcCCC
Q 014655          313 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPD  389 (421)
Q Consensus       313 ~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~~~l~~eL~~~~~~  389 (421)
                      ++....       ..+++++|+||+||+||++.||+..||+||+||.+++||||++..   +|.++++.|+.||+.|++.
T Consensus       200 vV~~~~-------~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~  272 (369)
T COG0536         200 VVRVDG-------GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPK  272 (369)
T ss_pred             EEEecC-------CCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHH
Confidence            998632       357999999999999999999999999999999999999999864   4699999999999999999


Q ss_pred             CCCCCEEEEEeCCCCCCCCCchHHH
Q 014655          390 YLERPFIVVLNKIDLPEMYDDSSSR  414 (421)
Q Consensus       390 l~~kP~IIVlNK~Dl~~~~e~~~~l  414 (421)
                      +.++|.+||+||+|++.+++.++.+
T Consensus       273 L~~K~~ivv~NKiD~~~~~e~~~~~  297 (369)
T COG0536         273 LAEKPRIVVLNKIDLPLDEEELEEL  297 (369)
T ss_pred             hccCceEEEEeccCCCcCHHHHHHH
Confidence            9999999999999987776655433

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=100.00  E-value=1.7e-74  Score=580.68  Aligned_cols=287  Identities=46%  Similarity=0.769  Sum_probs=265.4

Q ss_pred             CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655           75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF  154 (421)
Q Consensus        75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~  154 (421)
                      +|+|+++|+|+||+|||||+|              |+||||    +++||||||    |||+||||||+||++++||++|
T Consensus         1 ~f~d~~~i~~~~g~gg~g~~~--------------f~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~   58 (335)
T PRK12299          1 KFIDEAKIYVKAGDGGNGCVS--------------FRREKF----IPFGGPDGG----DGGRGGSVILEADENLNTLIDF   58 (335)
T ss_pred             CceEEEEEEEEecCCCCceee--------------Eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhh
Confidence            599999999999999999997              778887    688999998    9999999999999999999999


Q ss_pred             cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655          155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN  233 (421)
Q Consensus       155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~  233 (421)
                      +++++|+|++|+||.      +++++|++|+|++|+||+||+|++ +++++++||.+++|+++|||||+||+||.+|.++
T Consensus        59 ~~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~  132 (335)
T PRK12299         59 RYKRHFKAENGENGM------GRNRTGKSGKDLVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSS  132 (335)
T ss_pred             cCccEEECCCCCCCC------CCCCCCCCCCceEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhccc
Confidence            999999999999986      477899999999999999999998 5689999999999999999999999999887543


Q ss_pred             hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655          234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR  313 (421)
Q Consensus       234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~  313 (421)
                                   .+++|++++.|++||++.++||||.+++|+|||+||||||||||+|+++++.+++|||||+.|+++.
T Consensus       133 -------------~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~  199 (335)
T PRK12299        133 -------------TNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV  199 (335)
T ss_pred             -------------cCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE
Confidence                         2356889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCC
Q 014655          314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER  393 (421)
Q Consensus       314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k  393 (421)
                      +....       ..+++++||||+++++++..+++..|++|+++|++++||+|+++.++.++++.|.++|..|.+.+.++
T Consensus       200 v~~~~-------~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~k  272 (335)
T PRK12299        200 VRVDD-------YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADK  272 (335)
T ss_pred             EEeCC-------CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccC
Confidence            87632       24799999999999999999999999999999999999999998778899999999999998777789


Q ss_pred             CEEEEEeCCCCCCCCC
Q 014655          394 PFIVVLNKIDLPEMYD  409 (421)
Q Consensus       394 P~IIVlNK~Dl~~~~e  409 (421)
                      |+++|+||+|+.+..+
T Consensus       273 p~IIV~NKiDL~~~~~  288 (335)
T PRK12299        273 PRILVLNKIDLLDEEE  288 (335)
T ss_pred             CeEEEEECcccCCchh
Confidence            9999999999976543

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=100.00  E-value=2.7e-73  Score=586.32  Aligned_cols=290  Identities=48%  Similarity=0.806  Sum_probs=265.3

Q ss_pred             CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655           75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF  154 (421)
Q Consensus        75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~  154 (421)
                      +|+|+++|+|+||+|||||+|              |+||||    +++||||||    |||+||||||+||++++||++|
T Consensus         1 ~f~D~~~i~v~aG~GG~G~~s--------------f~rek~----~~~ggp~gG----~GG~GG~v~~~~~~~~~tl~~~   58 (424)
T PRK12297          1 MFIDQAKIYVKAGDGGDGMVS--------------FRREKY----VPKGGPDGG----DGGKGGSVIFVADEGLRTLLDF   58 (424)
T ss_pred             CceEEEEEEEEecCCCCceee--------------EEhhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhh
Confidence            499999999999999999997              778887    688999998    9999999999999999999999


Q ss_pred             cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655          155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN  233 (421)
Q Consensus       155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~  233 (421)
                      +++++|+|++|+||+      +++++|++|+|++|+||+||+|++ +++++++||.+++|+++|||||+||+||.+|..+
T Consensus        59 ~~~~~~~a~~G~~g~------~~~~~G~~g~d~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s  132 (424)
T PRK12297         59 RYKRHFKAENGENGM------GKNMHGRNGEDLIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATS  132 (424)
T ss_pred             cCccEEEcCCCCCCC------CCCCCCCCCCeeEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCC
Confidence            999999999999986      377899999999999999999998 5789999999999999999999999999887653


Q ss_pred             hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655          234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR  313 (421)
Q Consensus       234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~  313 (421)
                      .             +++|++++.|++||++.++||||.+++|+|||+||||||||||+|+++++++++|||||+.|+++.
T Consensus       133 ~-------------~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~  199 (424)
T PRK12297        133 T-------------NQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV  199 (424)
T ss_pred             C-------------CCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE
Confidence            2             356788999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC---CChhhHHHHHHHHHhcCCCC
Q 014655          314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDY  390 (421)
Q Consensus       314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~~~l~~eL~~~~~~l  390 (421)
                      +....       ..+++++||||+++++++..+++..|++|+++|+++|||+|+++.   ++.+++..|.++|..|.+.+
T Consensus       200 v~~~~-------~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L  272 (424)
T PRK12297        200 VETDD-------GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL  272 (424)
T ss_pred             EEEeC-------CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc
Confidence            86542       247999999999999999999999999999999999999999864   67888899999999998877


Q ss_pred             CCCCEEEEEeCCCCCCCCCchH
Q 014655          391 LERPFIVVLNKIDLPEMYDDSS  412 (421)
Q Consensus       391 ~~kP~IIVlNK~Dl~~~~e~~~  412 (421)
                      .++|++||+||+|+....+.++
T Consensus       273 ~~kP~IVV~NK~DL~~~~e~l~  294 (424)
T PRK12297        273 LERPQIVVANKMDLPEAEENLE  294 (424)
T ss_pred             cCCcEEEEEeCCCCcCCHHHHH
Confidence            8999999999999865443333

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=100.00  E-value=3.5e-73  Score=593.13  Aligned_cols=288  Identities=45%  Similarity=0.748  Sum_probs=264.7

Q ss_pred             CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhh
Q 014655           74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE  153 (421)
Q Consensus        74 ~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~  153 (421)
                      ++|||+++|+|+||+|||||+|              |+||||    +++||||||    |||+||||||++|++++||++
T Consensus         2 ~~fvD~~~i~v~aG~GG~G~~s--------------f~rek~----~~~ggpdGG----~GG~GG~v~~~~~~~~~tl~~   59 (500)
T PRK12296          2 PRFVDRVVLHVKAGDGGNGCAS--------------VHREKF----KPLGGPDGG----NGGRGGSVVLVVDPQVTTLLD   59 (500)
T ss_pred             CCcEEEEEEEEEecCCCCccee--------------eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcCchHH
Confidence            4699999999999999999997              678887    689999998    999999999999999999999


Q ss_pred             ccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEeccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655          154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN  233 (421)
Q Consensus       154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~  233 (421)
                      |+++++|+|++|+||.      +++++|++|+|++|+||+||+|++.++++|+||.++|++++||+||+||+||.+|+++
T Consensus        60 ~~~~~~~~a~~G~~G~------~~~~~G~~g~d~~i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~  133 (500)
T PRK12296         60 FHFRPHRKATNGKPGM------GDNRDGAAGEDLVLPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASK  133 (500)
T ss_pred             hccCceEECCCCCCCC------CCCCCCCCCCceEEecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCcCCCcccCCc
Confidence            9999999999999986      3689999999999999999999999999999999999999999999999999988664


Q ss_pred             hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655          234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR  313 (421)
Q Consensus       234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~  313 (421)
                      .             +++|++++.|++||++.+.||||.+++|+|||+||||||||||+|+++++.+++|||||+.|++++
T Consensus       134 ~-------------~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv  200 (500)
T PRK12296        134 A-------------RKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV  200 (500)
T ss_pred             c-------------CCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE
Confidence            3             356889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC----CCChhhHHHHHHHHHhcCC-
Q 014655          314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----ENPVNDYRTVKEELRMYNP-  388 (421)
Q Consensus       314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~----~~~~~~~~~l~~eL~~~~~-  388 (421)
                      +....        .+++|+||||+++++++.++++..|++|+++||+||||||+++    .++.+++..+.++|..|.. 
T Consensus       201 v~~~~--------~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~  272 (500)
T PRK12296        201 VQAGD--------TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPA  272 (500)
T ss_pred             EEECC--------eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhc
Confidence            87642        4799999999999999999999999999999999999999975    3577888889999998875 


Q ss_pred             --------CCCCCCEEEEEeCCCCCCCCCc
Q 014655          389 --------DYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       389 --------~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                              .+.++|+|||+||+|+++..+.
T Consensus       273 l~~~~~~~~l~~kP~IVVlNKiDL~da~el  302 (500)
T PRK12296        273 LDGDLGLGDLAERPRLVVLNKIDVPDAREL  302 (500)
T ss_pred             ccccchhhhhcCCCEEEEEECccchhhHHH
Confidence                    4567999999999999865543

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=100.00  E-value=1.9e-72  Score=564.88  Aligned_cols=286  Identities=47%  Similarity=0.793  Sum_probs=263.5

Q ss_pred             ceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhcc
Q 014655           76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFH  155 (421)
Q Consensus        76 f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~~  155 (421)
                      |+|+++|+|+||+|||||+|              |+||||    ++++|||||    |||+||||||+||++++||++++
T Consensus         1 f~D~~~i~~~~g~gg~g~~~--------------f~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~~   58 (329)
T TIGR02729         1 FVDEAKIFVKAGDGGNGCVS--------------FRREKY----VPKGGPDGG----DGGRGGSVILEADENLNTLLDFR   58 (329)
T ss_pred             CeEEEEEEEEecCCCCceee--------------EEeecc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhcc
Confidence            89999999999999999997              778887    688999998    99999999999999999999999


Q ss_pred             ccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEec-cCceeeccCCCCceEEEecCCCCCCCCCCcchhh
Q 014655          156 NKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENR  234 (421)
Q Consensus       156 ~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~~-~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~~  234 (421)
                      ++++|+|++|+||.      +++++|++|+|++|+||+||+|++. ++++++||.+++|+++|||||+||+||.+|..+ 
T Consensus        59 ~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~-  131 (329)
T TIGR02729        59 YQRHFKAENGENGM------GKNRTGKNGEDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSS-  131 (329)
T ss_pred             CCcEEEcCCCCCCC------CCCCCCCCCCceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCc-
Confidence            99999999999986      4788999999999999999999985 689999999999999999999999999887653 


Q ss_pred             hhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceee
Q 014655          235 RKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRL  314 (421)
Q Consensus       235 r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v  314 (421)
                                  .+++|+.++.|++||++.++||||.+++|+|||+||||||||||+|+++++.+++|||||+.|+++.+
T Consensus       132 ------------~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v  199 (329)
T TIGR02729       132 ------------TNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVV  199 (329)
T ss_pred             ------------cCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEE
Confidence                        23567889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC---CChhhHHHHHHHHHhcCCCCC
Q 014655          315 DGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYL  391 (421)
Q Consensus       315 ~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~~~l~~eL~~~~~~l~  391 (421)
                      ....       ..+++++||||+++.+++.++++..|++|+++||++|||+|+++.   ++.+++..|.++|..|.+.+.
T Consensus       200 ~~~~-------~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~  272 (329)
T TIGR02729       200 RVDD-------GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELA  272 (329)
T ss_pred             EeCC-------ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhc
Confidence            7642       147999999999999999999999999999999999999999876   678889999999999887777


Q ss_pred             CCCEEEEEeCCCCCCCCC
Q 014655          392 ERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       392 ~kP~IIVlNK~Dl~~~~e  409 (421)
                      ++|++||+||+|+....+
T Consensus       273 ~kp~IIV~NK~DL~~~~~  290 (329)
T TIGR02729       273 EKPRIVVLNKIDLLDEEE  290 (329)
T ss_pred             cCCEEEEEeCccCCChHH
Confidence            899999999999976543

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=100.00  E-value=2.3e-72  Score=575.40  Aligned_cols=289  Identities=43%  Similarity=0.706  Sum_probs=263.6

Q ss_pred             CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhh
Q 014655           74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE  153 (421)
Q Consensus        74 ~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~  153 (421)
                      ++|+|+++|+|+||+|||||+|              |+||||    +++||||||    |||+||||||+||++++||++
T Consensus         1 ~~f~D~~~i~~~~G~GG~g~~~--------------f~r~~~----~~~ggp~gg----~GG~Gg~v~~~~~~~~~~l~~   58 (390)
T PRK12298          1 MKFVDEAKIRVVAGDGGNGCVS--------------FRREKY----IPKGGPDGG----DGGDGGDVYLEADENLNTLID   58 (390)
T ss_pred             CCceEEEEEEEEecCCCCceee--------------Eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhh
Confidence            4699999999999999999997              778887    688999998    999999999999999999999


Q ss_pred             ccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcch
Q 014655          154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPE  232 (421)
Q Consensus       154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~  232 (421)
                      |+++++|+|++|+||.      +++++|++|+|++|+||+||+|++ +++++++||.+++|+++|||||+||+||.+|..
T Consensus        59 ~~~~~~~~a~~G~~g~------~~~~~g~~g~d~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~  132 (390)
T PRK12298         59 YRFERHFRAERGQNGQ------GRDCTGKRGKDITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKS  132 (390)
T ss_pred             hcCCceEEcCCCCCCC------CCCCCCCCCCceEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhcc
Confidence            9999999999999986      478999999999999999999997 678999999999999999999999999987754


Q ss_pred             hhhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce
Q 014655          233 NRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG  312 (421)
Q Consensus       233 ~~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g  312 (421)
                      +         +    +++|+.++.|++||++.++||||.+++|+|||+||||||||||+|+++++.+++|||||+.|+.|
T Consensus       133 ~---------~----~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G  199 (390)
T PRK12298        133 S---------V----NRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG  199 (390)
T ss_pred             C---------c----cCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE
Confidence            3         2    25678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCC---CCCChhhHHHHHHHHHhcCCC
Q 014655          313 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA---AENPVNDYRTVKEELRMYNPD  389 (421)
Q Consensus       313 ~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s---~~~~~~~~~~l~~eL~~~~~~  389 (421)
                      ++....       ..+++++||||+++.++++.+++..|++|+++||+++||+|++   ..++.+++..+.++|..|...
T Consensus       200 iv~~~~-------~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~  272 (390)
T PRK12298        200 VVRVDD-------ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPK  272 (390)
T ss_pred             EEEeCC-------CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhh
Confidence            987642       1359999999999999998999999999999999999999998   456778888899999998877


Q ss_pred             CCCCCEEEEEeCCCCCCCCCc
Q 014655          390 YLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       390 l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      +..+|+|+|+||+|+....+.
T Consensus       273 L~~kP~IlVlNKiDl~~~~el  293 (390)
T PRK12298        273 LAEKPRWLVFNKIDLLDEEEA  293 (390)
T ss_pred             hcCCCEEEEEeCCccCChHHH
Confidence            778999999999999765443

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=100.00  E-value=9.2e-71  Score=535.16  Aligned_cols=303  Identities=41%  Similarity=0.628  Sum_probs=272.9

Q ss_pred             CCCCCCCCCCCCCCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEE
Q 014655           62 NSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVV  141 (421)
Q Consensus        62 ~~~~~~~~~~~~~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~  141 (421)
                      .+....++.+....|+|..+|.+++|+||+||+||++.++                  .+.++||||    +||+||+||
T Consensus        27 ~~k~~~s~~~~sq~fiD~~rv~~kgG~GG~G~ssf~~~~~------------------~~~g~PdGG----dGG~GG~V~   84 (366)
T KOG1489|consen   27 FPKKLKSEHKASQNFIDKRRVRIKGGSGGSGASSFFRGYR------------------RPRGGPDGG----DGGNGGHVY   84 (366)
T ss_pred             ccccchhhhhhhhhhheeeeEEeeccCCCCccchhhhhcc------------------cccCCCCCC----CCCCCceEE
Confidence            3455577777788999999999999999999999876533                  245789998    999999999


Q ss_pred             EEec-CCccchhhccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEec
Q 014655          142 IYAD-EGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVAR  219 (421)
Q Consensus       142 ~~~~-~~~~~L~~~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~  219 (421)
                      ++|. ...++|.  +..++++|++|++++      +.+++|.+|++.+|+||+||+|+| +.+.++++|+++++++++||
T Consensus        85 ~~a~~~~~~~l~--~~~s~~~a~~Ge~~~------s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~ar  156 (366)
T KOG1489|consen   85 FVAKPGAFKQLS--HVGSLIQAPNGENGK------SKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAAR  156 (366)
T ss_pred             EEeCcccccccc--cCCceEEccCCCcCc------cccccCCCcceEEEecCCccEEeecccchhHHHhccCCcEEEEee
Confidence            9999 7777787  446899999999985      578999999999999999999998 77899999999999999999


Q ss_pred             CCCCCCCCCCcchhhhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCc
Q 014655          220 GGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI  299 (421)
Q Consensus       220 GG~GG~gn~~~~~~~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i  299 (421)
                      ||.||+||.+|...             .+..|.+++.|..|+++.++||||.+++|+|||+||||||||||+|++++|+|
T Consensus       157 GG~GG~gn~~fls~-------------~~r~p~~~~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkV  223 (366)
T KOG1489|consen  157 GGEGGKGNKFFLSN-------------ENRSPKFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKV  223 (366)
T ss_pred             cCCCCccceeeccc-------------cccCcccccCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcc
Confidence            99999999876431             23457889999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC---CChhhH
Q 014655          300 ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDY  376 (421)
Q Consensus       300 a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~  376 (421)
                      ++|+|||+.|++|++.++..       .+++++|+||+|++||+++|++..||+|||||+.++||+|++..   .+++++
T Consensus       224 a~YaFTTL~P~iG~v~yddf-------~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~  296 (366)
T KOG1489|consen  224 AHYAFTTLRPHIGTVNYDDF-------SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQL  296 (366)
T ss_pred             cccceeeeccccceeecccc-------ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHH
Confidence            99999999999999988753       35999999999999999999999999999999999999999998   999999


Q ss_pred             HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch-HHH
Q 014655          377 RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS-SSR  414 (421)
Q Consensus       377 ~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~-~~l  414 (421)
                      +.|+.||+.|...+.++|.+||+||+|++++++.+ +.|
T Consensus       297 ~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L  335 (366)
T KOG1489|consen  297 QLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSL  335 (366)
T ss_pred             HHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHH
Confidence            99999999999999999999999999997665543 444

>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []

Probab=100.00  E-value=7.7e-44  Score=321.46  Aligned_cols=155  Identities=42%  Similarity=0.679  Sum_probs=84.1

Q ss_pred             ceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhcc
Q 014655           76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFH  155 (421)
Q Consensus        76 f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~~  155 (421)
                      |||+++|+|+||+|||||+|              |+||+|    .++++||||    +||+||||||+||++++||++++
T Consensus         1 FvD~~~i~v~~G~GG~G~~s--------------f~r~~~----~~~ggp~GG----~GG~GG~V~l~~~~~~~sL~~~~   58 (156)
T PF01018_consen    1 FVDRVRIKVRGGNGGNGCVS--------------FRREKY----VPKGGPDGG----NGGNGGDVYLVADENVNSLLDLK   58 (156)
T ss_dssp             EECEEEEEEE------------------------EEEETT----CCEEEE--------------EEEEE-TT--SSCCCG
T ss_pred             CeEEEEEEEEecCCcCCEEe--------------EEeecc----ccCCCCCCC----CCCCCceeEEEecccccchhhcc
Confidence            89999999999999999997              667776    577899998    99999999999999999999999


Q ss_pred             ccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchhh
Q 014655          156 NKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENR  234 (421)
Q Consensus       156 ~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~~  234 (421)
                      ..++|+|++|+||.      +++++|++|+|++|+||+||+|++ +++++++||++++++++|||||.||.||.+|.++ 
T Consensus        59 ~~~~~~A~~G~~G~------~~~~~G~~G~dl~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG~GN~~f~s~-  131 (156)
T PF01018_consen   59 NKKHYKAENGENGK------SRNCHGKNGKDLIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGGLGNAHFKSS-  131 (156)
T ss_dssp             TSSEEE-------B------TTTB-------EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE--------GGGC-BT-
T ss_pred             eeeeEEcCCCCCCC------CCcccccCCCccEeeecCCcEEEeeccccchheeecccceeEEecCCCCccccccccCC-
Confidence            98999999999985      578899999999999999999999 6789999999999999999999999999877543 


Q ss_pred             hhccccccccccccchhHHHhcCCCccchhhhHHhhh
Q 014655          235 RKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRV  271 (421)
Q Consensus       235 r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~  271 (421)
                                  .+++|++++.|++||++.++||||+
T Consensus       132 ------------~~~~P~~~~~G~~Ge~~~l~LELK~  156 (156)
T PF01018_consen  132 ------------TNRAPRFATPGEPGEERKLELELKT  156 (156)
T ss_dssp             ------------TCSS--EEE------EEEEEEEEE-
T ss_pred             ------------CCCCCCccCCCCCceEEEEEEEEeC
Confidence                        2356788899999999999999874

These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.

>cd01898 Obg Obg subfamily

Probab=99.86  E-value=2.5e-21  Score=173.19  Aligned_cols=131  Identities=65%  Similarity=1.052  Sum_probs=108.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      ++|++||.+|||||||+|+|++.++.++.++++|.++..+.+....       ...+.++||||+.+.......+...|+
T Consensus         1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~~~~~   73 (170)
T cd01898           1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-------GRSFVVADIPGLIEGASEGKGLGHRFL   73 (170)
T ss_pred             CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-------CCeEEEEecCcccCcccccCCchHHHH
Confidence            5799999999999999999999887778899999999888876542       137899999999765544456778888


Q ss_pred             HhcccCCEEEEEeeCCCC-CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          353 RHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      ++++.||++++|+|+++. ++.+.+..+.+++..+.+....+|+++|+||+|+.+..+.
T Consensus        74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~  132 (170)
T cd01898          74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL  132 (170)
T ss_pred             HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh
Confidence            889999999999999988 6777888888888776554557999999999999765543

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=3.4e-21  Score=189.97  Aligned_cols=161  Identities=25%  Similarity=0.454  Sum_probs=116.6

Q ss_pred             hhhccccccccccccchhHHHhcCCCccchhhhHHhh-hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce
Q 014655          234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILR-VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG  312 (421)
Q Consensus       234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk-~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g  312 (421)
                      .|+.++++...++++..+.+...++..+...-.-.+. ..+.|.+.|+||+|||||+++||+++|.|++|||||...++|
T Consensus       129 lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG  208 (346)
T COG1084         129 LRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG  208 (346)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe
Confidence            3444555555556655666655554443211000112 445789999999999999999999999999999999999999


Q ss_pred             eecCCCCCCccccccceEEecCCccccccccc-CchhHH---HHHhcccCCEEEEEeeCCC--CCChhhHHHHHHHHHhc
Q 014655          313 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGRN---FLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMY  386 (421)
Q Consensus       313 ~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-~gl~~~---fL~~i~radvIl~VvD~s~--~~~~~~~~~l~~eL~~~  386 (421)
                      ++...        ..+++++||||+.+..-+. ..+...   .|+|+  .++|+|++|++.  ..+.+....|++++...
T Consensus       209 hfe~~--------~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~  278 (346)
T COG1084         209 HFERG--------YLRIQVIDTPGLLDRPLEERNEIERQAILALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKEL  278 (346)
T ss_pred             eeecC--------CceEEEecCCcccCCChHHhcHHHHHHHHHHHHh--cCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence            99865        2489999999999865432 233333   34555  489999999986  45677777788888764


Q ss_pred             CCCCCCCCEEEEEeCCCCCCCC
Q 014655          387 NPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       387 ~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                          ...|+++|+||+|..+.+
T Consensus       279 ----f~~p~v~V~nK~D~~~~e  296 (346)
T COG1084         279 ----FKAPIVVVINKIDIADEE  296 (346)
T ss_pred             ----cCCCeEEEEecccccchh
Confidence                458999999999988544

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=7.3e-21  Score=191.05  Aligned_cols=112  Identities=38%  Similarity=0.696  Sum_probs=91.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC--------CC--ccccccceEEecCCcccccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--------LG--AEKYSSEATLADLPGLIEGA  341 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~--------~~--~~~~~~~i~iiDtPGlie~a  341 (421)
                      ..++||||.||+|||||+|+||.....+++|||||++|+.|++....-        ..  .......+.++|++|++.+|
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            357999999999999999999999988899999999999998875320        00  00112358999999999999


Q ss_pred             cccCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHH
Q 014655          342 HLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL  383 (421)
Q Consensus       342 ~~~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL  383 (421)
                      |+++||+.+||.+|+.+|+|++|||++.          -+|.+|++.+..||
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL  133 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTEL  133 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHH
Confidence            9999999999999999999999999974          25566655554443

>PTZ00258 GTP-binding protein; Provisional

Probab=99.83  E-value=1.6e-20  Score=192.12  Aligned_cols=116  Identities=33%  Similarity=0.574  Sum_probs=94.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC--------Cc-cccccceEEecCCccccc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLIEG  340 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~--------~~-~~~~~~i~iiDtPGlie~  340 (421)
                      ....+|+|||.||||||||+|+|++.++.+++|||||++|+.|.+......        .. .....++.++||||++++
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            455689999999999999999999999989999999999999998654210        00 001236999999999999


Q ss_pred             ccccCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHh
Q 014655          341 AHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRM  385 (421)
Q Consensus       341 a~~~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~  385 (421)
                      ++.+++++..|++++++||+++||||+..          .+|.++++.+..||..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~  153 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELIL  153 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHH
Confidence            99989999999999999999999999852          3567777766665543

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.82  E-value=2.7e-20  Score=183.19  Aligned_cols=89  Identities=48%  Similarity=0.780  Sum_probs=85.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      ++|+|||+||+|||||||+||+++..+++|+|||+.|..|++++..        .+|+++|+||++++|+.++|.++.++
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--------a~IQild~Pgii~gas~g~grG~~vl  135 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--------AQIQLLDLPGIIEGASSGRGRGRQVL  135 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--------ceEEEEcCcccccCcccCCCCcceee
Confidence            7899999999999999999999999999999999999999999874        58999999999999999999999999


Q ss_pred             HhcccCCEEEEEeeCCC
Q 014655          353 RHLRRTRLLVHVIDAAA  369 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~  369 (421)
                      ..++.||+|++|+|+..
T Consensus       136 sv~R~ADlIiiVld~~~  152 (365)
T COG1163         136 SVARNADLIIIVLDVFE  152 (365)
T ss_pred             eeeccCCEEEEEEecCC
Confidence            99999999999999975

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=4.3e-20  Score=189.18  Aligned_cols=135  Identities=28%  Similarity=0.342  Sum_probs=114.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc--cccCchhH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HLGKGLGR  349 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a--~~~~gl~~  349 (421)
                      +.|+|||.||+|||||+|+|++.+.++ +++|++|+|..++..+..        +.++.++||+|+.+..  ...+.+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~--------~~~f~lIDTgGl~~~~~~~l~~~i~~   75 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL--------GREFILIDTGGLDDGDEDELQELIRE   75 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc--------CceEEEEECCCCCcCCchHHHHHHHH
Confidence            579999999999999999999999887 999999999999887643        4579999999998754  34556677


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFNP  421 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~e  421 (421)
                      +.+..++.||++|||||.....+.+|.. +.+.|..     .++|+++|+||+|-...++...+++.+|+.+
T Consensus        76 Qa~~Ai~eADvilfvVD~~~Git~~D~~-ia~~Lr~-----~~kpviLvvNK~D~~~~e~~~~efyslG~g~  141 (444)
T COG1160          76 QALIAIEEADVILFVVDGREGITPADEE-IAKILRR-----SKKPVILVVNKIDNLKAEELAYEFYSLGFGE  141 (444)
T ss_pred             HHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEEcccCchhhhhHHHHHhcCCCC
Confidence            7888999999999999998877666644 5566664     4699999999999988888888999999875

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.81  E-value=7.9e-20  Score=185.37  Aligned_cols=114  Identities=37%  Similarity=0.660  Sum_probs=92.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC--------Cc-cccccceEEecCCcccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~--------~~-~~~~~~i~iiDtPGlie~a~~  343 (421)
                      .+|+|||.||||||||+|+|++.++.+++|||||++|+.|.+......        .+ .....++.++||||+++++++
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            589999999999999999999999888999999999999988754310        00 001135999999999999999


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhc
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMY  386 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~  386 (421)
                      +++++..||+++++||+|++|||+..          .+|.++++.+..||..+
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~  135 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILA  135 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999853          25666666665555443

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.81  E-value=1.4e-19  Score=186.39  Aligned_cols=113  Identities=44%  Similarity=0.703  Sum_probs=90.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCC----------------ccccccceEEecCCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----------------AEKYSSEATLADLPG  336 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~----------------~~~~~~~i~iiDtPG  336 (421)
                      .+|+|||+||||||||+|+|++.+..+++|||||++|+.|.+......+                ......++.++||||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            4799999999999999999999998889999999999999865321100                001124689999999


Q ss_pred             ccccccccCchhHHHHHhcccCCEEEEEeeCCC-------------CCChhhHHHHHHHHHh
Q 014655          337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRM  385 (421)
Q Consensus       337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~-------------~~~~~~~~~l~~eL~~  385 (421)
                      ++++++.+++++..||++++.||++++|+|++.             .+|.++++.+..||..
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~  143 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDM  143 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999972             2455666555554443

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.80  E-value=1.5e-19  Score=181.17  Aligned_cols=111  Identities=45%  Similarity=0.706  Sum_probs=90.0

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCc----------------cccccceEEecCCccc
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGA----------------EKYSSEATLADLPGLI  338 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~----------------~~~~~~i~iiDtPGli  338 (421)
                      |++||.||||||||+|+|++....+++|||||.+|+.|........+.                .....++.++||||++
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            689999999999999999999988899999999999987764211000                0112469999999999


Q ss_pred             ccccccCchhHHHHHhcccCCEEEEEeeCCC-------------CCChhhHHHHHHHHHh
Q 014655          339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRM  385 (421)
Q Consensus       339 e~a~~~~gl~~~fL~~i~radvIl~VvD~s~-------------~~~~~~~~~l~~eL~~  385 (421)
                      +++++.++++..||++++.||+++||+|++.             .+|.++++.+.+||..
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~  140 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDM  140 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999974             2456677666666554

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.80  E-value=1.7e-19  Score=182.61  Aligned_cols=134  Identities=35%  Similarity=0.436  Sum_probs=113.0

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ..++.|+||||+|||||||+|+|+++.....+..|+|++|....+....       +.++.+.||-|+|.+  ....|..
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-------g~~vlLtDTVGFI~~--LP~~LV~  260 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-------GRKVLLTDTVGFIRD--LPHPLVE  260 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-------CceEEEecCccCccc--CChHHHH
Confidence            4678999999999999999999999998889999999999999887653       357999999999986  5667887


Q ss_pred             HHH---HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHH
Q 014655          350 NFL---RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSR  414 (421)
Q Consensus       350 ~fL---~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l  414 (421)
                      +|.   +.+..||++++|||++++...+.++...+.|.....  ..+|+|+|+||+|+....+....+
T Consensus       261 AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~~~~~~~~~  326 (411)
T COG2262         261 AFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLEDEEILAEL  326 (411)
T ss_pred             HHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC--CCCCEEEEEecccccCchhhhhhh
Confidence            775   455679999999999999888888888888888654  459999999999988766544333

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.79  E-value=2.6e-19  Score=183.85  Aligned_cols=141  Identities=29%  Similarity=0.368  Sum_probs=115.0

Q ss_pred             ccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCcccc
Q 014655          247 RDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKY  325 (421)
Q Consensus       247 r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~  325 (421)
                      ++...++......|+      .|+...+|+++|.||||||||||+|++.+.+| .+.|+||+|.....++..        
T Consensus       198 ~~~l~~ll~~~~~g~------ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~--------  263 (454)
T COG0486         198 IAELDELLATAKQGK------ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN--------  263 (454)
T ss_pred             HHHHHHHHHhhhhhh------hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC--------
Confidence            445566777778887      78999999999999999999999999999887 999999999988888776        


Q ss_pred             ccceEEecCCccccccc--ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          326 SSEATLADLPGLIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~--~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      +..+.++||.|+.+...  +..|+.+++ +.++.||+++||+|++.+.+.++...+. .+      ..++|+++|+||+|
T Consensus       264 G~pv~l~DTAGiRet~d~VE~iGIeRs~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~------~~~~~~i~v~NK~D  335 (454)
T COG0486         264 GIPVRLVDTAGIRETDDVVERIGIERAK-KAIEEADLVLFVLDASQPLDKEDLALIE-LL------PKKKPIIVVLNKAD  335 (454)
T ss_pred             CEEEEEEecCCcccCccHHHHHHHHHHH-HHHHhCCEEEEEEeCCCCCchhhHHHHH-hc------ccCCCEEEEEechh
Confidence            35899999999998654  345666664 7889999999999999875556654433 11      15699999999999


Q ss_pred             CCCCCC
Q 014655          404 LPEMYD  409 (421)
Q Consensus       404 l~~~~e  409 (421)
                      |.....
T Consensus       336 L~~~~~  341 (454)
T COG0486         336 LVSKIE  341 (454)
T ss_pred             cccccc
Confidence            987644

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.78  E-value=6.8e-20  Score=165.91  Aligned_cols=119  Identities=33%  Similarity=0.474  Sum_probs=88.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc--ccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~--~~~gl~~~  350 (421)
                      .+|+|+|.||+|||||+|+|++.+..+++||++|.+...|.+...        +..+.++|+||+..-.+  ..+.+...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~--------~~~~~lvDlPG~ysl~~~s~ee~v~~~   72 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG--------DQQVELVDLPGIYSLSSKSEEERVARD   72 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET--------TEEEEEEE----SSSSSSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec--------CceEEEEECCCcccCCCCCcHHHHHHH
Confidence            379999999999999999999999889999999999999998865        25799999999865332  22334444


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ++. .+..|++++|+|+++  ...++. +..+|..     .++|+++|+||+|+....
T Consensus        73 ~l~-~~~~D~ii~VvDa~~--l~r~l~-l~~ql~e-----~g~P~vvvlN~~D~a~~~  121 (156)
T PF02421_consen   73 YLL-SEKPDLIIVVVDATN--LERNLY-LTLQLLE-----LGIPVVVVLNKMDEAERK  121 (156)
T ss_dssp             HHH-HTSSSEEEEEEEGGG--HHHHHH-HHHHHHH-----TTSSEEEEEETHHHHHHT
T ss_pred             HHh-hcCCCEEEEECCCCC--HHHHHH-HHHHHHH-----cCCCEEEEEeCHHHHHHc
Confidence            443 378999999999985  234444 4444444     469999999999987654

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.78  E-value=1.2e-18  Score=156.26  Aligned_cols=127  Identities=51%  Similarity=0.908  Sum_probs=100.7

Q ss_pred             ccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcc
Q 014655          277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR  356 (421)
Q Consensus       277 LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~  356 (421)
                      |+|.+|||||||+|+|++.+..++++++||.+++.+.+....       ...+.++||||+.+.....+.+...|++.+.
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-------GARIQVADIPGLIEGASEGRGLGNQFLAHIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-------CCeEEEEeccccchhhhcCCCccHHHHHHHh
Confidence            689999999999999999887778899999999888765431       2478999999997765555667777888899


Q ss_pred             cCCEEEEEeeCCCC------CChhhHHHHHHHHHhcCCC-----CCCCCEEEEEeCCCCCCCCCc
Q 014655          357 RTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPD-----YLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       357 radvIl~VvD~s~~------~~~~~~~~l~~eL~~~~~~-----l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      .+|++++|+|+++.      .+.++...+..++..+...     ...+|+++|+||+|+....+.
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~  138 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL  138 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH
Confidence            99999999999886      4566666676677654322     246999999999999765543

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.78  E-value=6.1e-19  Score=179.08  Aligned_cols=126  Identities=37%  Similarity=0.457  Sum_probs=98.2

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH-
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-  349 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~-  349 (421)
                      ..++|+|||+||||||||+|+|++.+..+.+++|||+++....+....       +..+.++||||++...  ...+.. 
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-------~~~i~l~DT~G~~~~l--~~~lie~  258 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-------GGEVLLTDTVGFIRDL--PHELVAA  258 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-------CceEEEEecCcccccC--CHHHHHH
Confidence            558999999999999999999999886668999999999888776532       2479999999996531  122222 


Q ss_pred             --HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 --NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 --~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        ..++++..||++++|+|++++...++...+.+.+.....  .++|+++|+||+|+.+.
T Consensus       259 f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~--~~~piIlV~NK~Dl~~~  316 (351)
T TIGR03156       259 FRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA--EDIPQLLVYNKIDLLDE  316 (351)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc--CCCCEEEEEEeecCCCh
Confidence              335667899999999999988766666666666665432  36899999999999754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK11058 GTPase HflX; Provisional

Probab=99.77  E-value=1e-18  Score=181.59  Aligned_cols=126  Identities=40%  Similarity=0.507  Sum_probs=97.7

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .++.|+|||+||||||||+|+|++.+..+.+++|+|+++....+....       ...+.++||||++...  ...+...
T Consensus       196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-------~~~~~l~DTaG~~r~l--p~~lve~  266 (426)
T PRK11058        196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-------VGETVLADTVGFIRHL--PHDLVAA  266 (426)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-------CCeEEEEecCcccccC--CHHHHHH
Confidence            457899999999999999999999988888999999999887776532       1368999999996531  1223333


Q ss_pred             H---HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 F---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 f---L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      |   ++++..||++++|+|++++...++...+.+.|.....  .++|+++|+||+|+...
T Consensus       267 f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~~  324 (426)
T PRK11058        267 FKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLDD  324 (426)
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCCc
Confidence            4   5667889999999999988766766656666665432  36899999999999753

>cd01900 YchF YchF subfamily

Probab=99.77  E-value=6.8e-19  Score=172.93  Aligned_cols=112  Identities=39%  Similarity=0.683  Sum_probs=91.5

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCC---ccc------cccceEEecCCcccccccccC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---AEK------YSSEATLADLPGLIEGAHLGK  345 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~---~~~------~~~~i~iiDtPGlie~a~~~~  345 (421)
                      |+|||+||||||||+|+|++.+..+++|||||++|+.|.+......-   ...      ...++.++||||++++++.++
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            68999999999999999999999889999999999999887542100   000      112599999999999999999


Q ss_pred             chhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhc
Q 014655          346 GLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMY  386 (421)
Q Consensus       346 gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~  386 (421)
                      +++..|+.++++||++++|||+..          .+|..+++.+..||..+
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~  131 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILA  131 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999853          25677777766666554

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG1159 Era GTPase [General function prediction only]

Probab=99.77  E-value=1.4e-18  Score=169.98  Aligned_cols=122  Identities=32%  Similarity=0.430  Sum_probs=100.9

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~f  351 (421)
                      -|++||.||||||||+|+|.+++.++ ++.|.||+....|++..+        +.+++++||||+.+..+ .++-+.+..
T Consensus         8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--------~~QiIfvDTPGih~pk~~l~~~m~~~a   79 (298)
T COG1159           8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--------NAQIIFVDTPGIHKPKHALGELMNKAA   79 (298)
T ss_pred             EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--------CceEEEEeCCCCCCcchHHHHHHHHHH
Confidence            48999999999999999999999887 999999999999988765        35899999999987643 355566777


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...+..+|+++||+|+.......+ +.+.+.|..     .+.|+++++||+|....+.
T Consensus        80 ~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-----~~~pvil~iNKID~~~~~~  131 (298)
T COG1159          80 RSALKDVDLILFVVDADEGWGPGD-EFILEQLKK-----TKTPVILVVNKIDKVKPKT  131 (298)
T ss_pred             HHHhccCcEEEEEEeccccCCccH-HHHHHHHhh-----cCCCeEEEEEccccCCcHH
Confidence            888999999999999987543333 455666654     4689999999999988776

>TIGR00436 era GTP-binding protein Era

Probab=99.75  E-value=4.2e-18  Score=166.59  Aligned_cols=121  Identities=26%  Similarity=0.286  Sum_probs=91.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~~f  351 (421)
                      .|+++|.||||||||+|+|++.+.. ++++|.||.+...+.....        ..++.++||||+.+..+. .+.+...+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~--------~~qii~vDTPG~~~~~~~l~~~~~~~~   73 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG--------ASQIIFIDTPGFHEKKHSLNRLMMKEA   73 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC--------CcEEEEEECcCCCCCcchHHHHHHHHH
Confidence            5899999999999999999998865 4889999998776665433        246999999999765221 22234445


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...++.+|+++||+|++......  +.+.+.+..     .++|+++|+||+|+....+
T Consensus        74 ~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~  124 (270)
T TIGR00436        74 RSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDK  124 (270)
T ss_pred             HHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHH
Confidence            67789999999999998754432  445556654     3689999999999975443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.74  E-value=6.4e-18  Score=167.11  Aligned_cols=113  Identities=40%  Similarity=0.706  Sum_probs=92.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC---------CccccccceEEecCCcccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~---------~~~~~~~~i~iiDtPGlie~a~~  343 (421)
                      .++||||.||+|||||+|+||+.....++|||||++|+.+.+......         +.......+++.|++|+..+||.
T Consensus        21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~  100 (391)
T KOG1491|consen   21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA  100 (391)
T ss_pred             ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence            479999999999999999999999889999999999999987643110         00011235899999999999999


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHh
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRM  385 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~  385 (421)
                      ++||+..||.||+.+|.|++||++..          -+|..+++.+.+||..
T Consensus       101 G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~l  152 (391)
T KOG1491|consen  101 GEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRL  152 (391)
T ss_pred             CcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHH
Confidence            99999999999999999999999865          2566666666655543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.73  E-value=8.9e-18  Score=142.91  Aligned_cols=113  Identities=34%  Similarity=0.560  Sum_probs=87.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC--chhHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGRN  350 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~--gl~~~  350 (421)
                      +|+|+|.||||||||+|+|++.+. .+++.+++|..+..+.+...        ...+.++||||+.+......  .....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~--------~~~~~~vDtpG~~~~~~~~~~~~~~~~   72 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN--------NKKFILVDTPGINDGESQDNDGKEIRK   72 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET--------TEEEEEEESSSCSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec--------eeeEEEEeCCCCcccchhhHHHHHHHH
Confidence            589999999999999999998754 45889999998866655443        24679999999987644322  23446


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                      +++.+..+|+++||+|++. ...++...+.++|+      ..+|+++|+||
T Consensus        73 ~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK  116 (116)
T PF01926_consen   73 FLEQISKSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK  116 (116)
T ss_dssp             HHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred             HHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence            8888999999999999776 22344556666674      46899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.71  E-value=3.1e-17  Score=157.60  Aligned_cols=90  Identities=46%  Similarity=0.696  Sum_probs=78.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      ++|+++|+||+|||||+|+|++....+++|+|||.++..|.+...        +.++.++||||+.+.+....++...++
T Consensus         1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--------~~~i~l~DtpG~~~~~~~~~~~~~~~l   72 (233)
T cd01896           1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--------GAKIQLLDLPGIIEGAADGKGRGRQVI   72 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--------CeEEEEEECCCcccccccchhHHHHHH
Confidence            479999999999999999999998888999999999998887654        247999999999887665566777788


Q ss_pred             HhcccCCEEEEEeeCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAE  370 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~  370 (421)
                      ..++.+|++++|+|+++.
T Consensus        73 ~~~~~ad~il~V~D~t~~   90 (233)
T cd01896          73 AVARTADLILMVLDATKP   90 (233)
T ss_pred             HhhccCCEEEEEecCCcc
Confidence            899999999999999753

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00092 GTP-binding protein YchF

Probab=99.70  E-value=4.7e-17  Score=165.28  Aligned_cols=115  Identities=36%  Similarity=0.620  Sum_probs=95.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCC--------Cc-cccccceEEecCCccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~--------~~-~~~~~~i~iiDtPGlie~a~  342 (421)
                      .++||||+||+|||||+|+||+..+ .+++|||||.+|+.|++...+..        .. ......+.++|+||++++++
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            5799999999999999999999999 88999999999999998764310        00 00123689999999999999


Q ss_pred             ccCchhHHHHHhcccCCEEEEEeeCCCC----------CChhhHHHHHHHHHhcC
Q 014655          343 LGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRMYN  387 (421)
Q Consensus       343 ~~~gl~~~fL~~i~radvIl~VvD~s~~----------~~~~~~~~l~~eL~~~~  387 (421)
                      ++.|++..||.|++.||++++|+|+...          +|..+++.+.+||..++
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d  137 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKAD  137 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998642          56677777777776654

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.69  E-value=1.5e-16  Score=142.29  Aligned_cols=126  Identities=30%  Similarity=0.457  Sum_probs=87.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC-chhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~-gl~~~f  351 (421)
                      ++|+++|.+|||||||+|+|++....+.+++++|..+..+.+...        ..++.+|||||+.+.....+ .+....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~~~~~~~~~~~~   72 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--------YLRWQVIDTPGLLDRPLEERNTIEMQA   72 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--------ceEEEEEECCCcCCccccCCchHHHHH
Confidence            478999999999999999999988777788999988887766543        24799999999865322211 111111


Q ss_pred             HHhc-ccCCEEEEEeeCCCCCCh--hhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHL-RRTRLLVHVIDAAAENPV--NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i-~radvIl~VvD~s~~~~~--~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +..+ ..+|++++|+|+++....  +....+.+++....   .+.|+++|+||+|+....+
T Consensus        73 ~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~  130 (168)
T cd01897          73 ITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTFED  130 (168)
T ss_pred             HHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCchhh
Confidence            1111 236899999999875432  33344555554422   3689999999999976543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01894 EngA1 EngA1 subfamily

Probab=99.69  E-value=1.5e-16  Score=139.44  Aligned_cols=130  Identities=25%  Similarity=0.361  Sum_probs=93.1

Q ss_pred             cccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHHHHH
Q 014655          276 GLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNFLR  353 (421)
Q Consensus       276 ~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~fL~  353 (421)
                      +++|.+|||||||+|+|++.... +.+++.+|.+.....+...        +..+.++||||+.+... ....+...+..
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~   72 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--------GREFILIDTGGIEPDDEGISKEIREQAEL   72 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--------CeEEEEEECCCCCCchhHHHHHHHHHHHH
Confidence            58999999999999999987643 4778888877666555433        24789999999976532 11223344556


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      .++.+|++++|+|+.+.....+. .+...+..     .+.|+++|+||+|+.........++.+++
T Consensus        73 ~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~-----~~~piiiv~nK~D~~~~~~~~~~~~~~~~  132 (157)
T cd01894          73 AIEEADVILFVVDGREGLTPADE-EIAKYLRK-----SKKPVILVVNKVDNIKEEDEAAEFYSLGF  132 (157)
T ss_pred             HHHhCCEEEEEEeccccCCccHH-HHHHHHHh-----cCCCEEEEEECcccCChHHHHHHHHhcCC
Confidence            77889999999999875544443 34455554     35899999999999876655555555554

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01878 HflX HflX subfamily

Probab=99.69  E-value=2.3e-16  Score=146.76  Aligned_cols=129  Identities=36%  Similarity=0.437  Sum_probs=96.6

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +..++|+|+|.+|||||||+|+|++....+.+++++|.++....+....       ...+.++||||+.+....  .+..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~Dt~G~~~~~~~--~~~~  109 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-------GREVLLTDTVGFIRDLPH--QLVE  109 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-------CceEEEeCCCccccCCCH--HHHH
Confidence            4568999999999999999999999876667788899888777665432       127999999998654221  1212


Q ss_pred             ---HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 ---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ---~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                         ..+.++..+|++++|+|++++....+...+.+.+..+..  .++|+++|+||+|+.....
T Consensus       110 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~--~~~~viiV~NK~Dl~~~~~  170 (204)
T cd01878         110 AFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA--EDIPMILVLNKIDLLDDEE  170 (204)
T ss_pred             HHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc--CCCCEEEEEEccccCChHH
Confidence               223456789999999999987766666666666665432  3589999999999976543

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.66  E-value=4e-16  Score=161.42  Aligned_cols=133  Identities=27%  Similarity=0.348  Sum_probs=100.9

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~f  351 (421)
                      +|++||.||||||||+|+|++.+.+ +.+++++|.+...+.+...        +..+.++||||+..... ....+....
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~--------~~~~~liDTpG~~~~~~~~~~~~~~~~   72 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG--------GREFILIDTGGIEEDDDGLDKQIREQA   72 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC--------CeEEEEEECCCCCCcchhHHHHHHHHH
Confidence            4899999999999999999998765 4889999998887776543        24699999999854321 112334445


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN  420 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~  420 (421)
                      ..+++.||+++||+|+..+....+ ..+.++|+.     .++|+++|+||+|+........+++.+|+.
T Consensus        73 ~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~-----~~~piilVvNK~D~~~~~~~~~~~~~lg~~  135 (429)
T TIGR03594        73 EIAIEEADVILFVVDGREGLTPED-EEIAKWLRK-----SGKPVILVANKIDGKKEDAVAAEFYSLGFG  135 (429)
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH-----hCCCEEEEEECccCCcccccHHHHHhcCCC
Confidence            667889999999999987655444 345666765     368999999999998766666677778774

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.65  E-value=5.9e-16  Score=162.95  Aligned_cols=137  Identities=25%  Similarity=0.290  Sum_probs=98.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCch
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL  347 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl  347 (421)
                      ..+++|+|||.||||||||+|+|++.+.. +.+.+++|.+...+.+...        +..+.+|||||+..... ....+
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~~  107 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN--------GRRFTVVDTGGWEPDAKGLQASV  107 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC--------CcEEEEEeCCCcCCcchhHHHHH
Confidence            44579999999999999999999987754 4788899988776665443        24689999999864221 11122


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN  420 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~  420 (421)
                      ......+++.||++|+|+|+++..+..+ ..+.+++..     .++|+++|+||+|+........++..+|+.
T Consensus       108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~~~~~~~~g~~  174 (472)
T PRK03003        108 AEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-----SGKPVILAANKVDDERGEADAAALWSLGLG  174 (472)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECccCCccchhhHHHHhcCCC
Confidence            2334456789999999999998765544 445666664     468999999999997654444556666654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.65  E-value=8.8e-16  Score=135.21  Aligned_cols=115  Identities=33%  Similarity=0.475  Sum_probs=84.9

Q ss_pred             ccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHHHHHh
Q 014655          277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRH  354 (421)
Q Consensus       277 LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~fL~~  354 (421)
                      |+|.+|+|||||+|+|++....+.+++++|.+.....+..+        +..+.++||||+.+....  ...+...++.+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   72 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--------GKEIEIVDLPGTYSLSPYSEDEKVARDFLLG   72 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--------CeEEEEEECCCccccCCCChhHHHHHHHhcC
Confidence            68999999999999999987667888999998877776654        236899999998764321  22344445444


Q ss_pred             cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                       +.+|++++|+|+++...   ...+..++..     .++|+++|+||+|+.+..
T Consensus        73 -~~~d~vi~v~d~~~~~~---~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~  117 (158)
T cd01879          73 -EKPDLIVNVVDATNLER---NLYLTLQLLE-----LGLPVVVALNMIDEAEKR  117 (158)
T ss_pred             -CCCcEEEEEeeCCcchh---HHHHHHHHHH-----cCCCEEEEEehhhhcccc
Confidence             68999999999986432   2223334444     368999999999997654

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.65  E-value=3.6e-16  Score=163.71  Aligned_cols=125  Identities=29%  Similarity=0.310  Sum_probs=92.3

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  346 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g  346 (421)
                      .++...+|+++|.||||||||+|+|++.+.. +.++++||.+.....+...        +..+.++||||+.+....-+.
T Consensus       211 ~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--------g~~i~l~DT~G~~~~~~~ie~  282 (449)
T PRK05291        211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--------GIPLRLIDTAGIRETDDEVEK  282 (449)
T ss_pred             HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--------CeEEEEEeCCCCCCCccHHHH
Confidence            4566789999999999999999999998764 5889999998877666543        246899999998653211111


Q ss_pred             h-hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          347 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       347 l-~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      . .+..+.++..+|++++|+|++++...++...+..        ..++|+++|+||+|+....
T Consensus       283 ~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~  337 (449)
T PRK05291        283 IGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEI  337 (449)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccc
Confidence            1 1224567889999999999988765554433322        2468999999999997543

>PRK00089 era GTPase Era; Reviewed

Probab=99.64  E-value=5.8e-16  Score=152.63  Aligned_cols=120  Identities=33%  Similarity=0.452  Sum_probs=88.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~f  351 (421)
                      -|+|+|.||||||||+|+|++.+..+ ++.+.||.+...+.+...        ..++.++||||+.+... .++.+....
T Consensus         7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--------~~qi~~iDTPG~~~~~~~l~~~~~~~~   78 (292)
T PRK00089          7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--------DAQIIFVDTPGIHKPKRALNRAMNKAA   78 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--------CceEEEEECCCCCCchhHHHHHHHHHH
Confidence            58999999999999999999988654 788888887776665532        24799999999876432 122233444


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...+..+|++++|+|+++... +....+.+.+..     .+.|+++|+||+|+...
T Consensus        79 ~~~~~~~D~il~vvd~~~~~~-~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~  128 (292)
T PRK00089         79 WSSLKDVDLVLFVVDADEKIG-PGDEFILEKLKK-----VKTPVILVLNKIDLVKD  128 (292)
T ss_pred             HHHHhcCCEEEEEEeCCCCCC-hhHHHHHHHHhh-----cCCCEEEEEECCcCCCC
Confidence            567789999999999987332 223344445543     35899999999999843

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.64  E-value=9.5e-16  Score=159.14  Aligned_cols=134  Identities=27%  Similarity=0.347  Sum_probs=99.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~  350 (421)
                      ++|+|||.||||||||+|+|++.+.+ +.+++++|.+...+.+...        +..+.+|||||+.+... ....+...
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~~~~~   73 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL--------GREFILIDTGGIEPDDDGFEKQIREQ   73 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC--------CcEEEEEECCCCCCcchhHHHHHHHH
Confidence            57999999999999999999998764 4789999988877766543        24799999999976321 11223344


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN  420 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~  420 (421)
                      ...+++.+|++|||+|++++....+. .+.++|+.     .++|+++|+||+|+...++...++..+|+.
T Consensus        74 ~~~~~~~ad~il~vvd~~~~~~~~~~-~~~~~l~~-----~~~piilv~NK~D~~~~~~~~~~~~~lg~~  137 (435)
T PRK00093         74 AELAIEEADVILFVVDGRAGLTPADE-EIAKILRK-----SNKPVILVVNKVDGPDEEADAYEFYSLGLG  137 (435)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECccCccchhhHHHHHhcCCC
Confidence            56678899999999999876544443 35556665     368999999999987655555666677664

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.64  E-value=5.2e-16  Score=159.30  Aligned_cols=123  Identities=26%  Similarity=0.304  Sum_probs=99.8

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch--
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL--  347 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl--  347 (421)
                      ...+|++||.||+|||||+|+|++.+..+ ++.++||+++....++.+        +..+.++||.|+.....-..++  
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~--------~~~~~liDTAGiRrk~ki~e~~E~  248 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD--------GRKYVLIDTAGIRRKGKITESVEK  248 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC--------CeEEEEEECCCCCcccccccceEE
Confidence            45799999999999999999999998776 999999999988777654        3579999999998654332222  


Q ss_pred             --hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          348 --GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       348 --~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        ....++.+++||++++|+|++.+...++.+.+-...+      .+++++||+||+|+.+.
T Consensus       249 ~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~------~g~~~vIvvNKWDl~~~  304 (444)
T COG1160         249 YSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEE------AGRGIVIVVNKWDLVEE  304 (444)
T ss_pred             EeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH------cCCCeEEEEEccccCCc
Confidence              2345788999999999999999887777665544444      47999999999999876

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.64  E-value=9.3e-16  Score=160.24  Aligned_cols=124  Identities=30%  Similarity=0.402  Sum_probs=92.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--c
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--G  344 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~  344 (421)
                      .++...+|+++|.||||||||+|+|++.+. .+.++|+||.+.....+..+        +..+.++||||+.+....  .
T Consensus       199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--------g~~v~l~DTaG~~~~~~~ie~  270 (442)
T TIGR00450       199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--------GILIKLLDTAGIREHADFVER  270 (442)
T ss_pred             HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--------CEEEEEeeCCCcccchhHHHH
Confidence            456778999999999999999999998765 45899999998877766654        246899999999754221  1


Q ss_pred             CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++ .....+++.||++++|+|++++.+.++.  ++.++..     .++|+++|+||+|+...
T Consensus       271 ~gi-~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       271 LGI-EKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-----SKKPFILVLNKIDLKIN  325 (442)
T ss_pred             HHH-HHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-----CCCCEEEEEECccCCCc
Confidence            111 1234678899999999999887655543  3344432     36899999999999654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=5.5e-16  Score=159.57  Aligned_cols=130  Identities=25%  Similarity=0.355  Sum_probs=99.5

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc-c--c
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA-H--L  343 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a-~--~  343 (421)
                      +++..++|+|+|.||||||||+|+|++.+..| ++.|+||+|.....++..        +.++.++||.|+.+.. .  +
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~--------G~~v~L~DTAGiRe~~~~~iE  335 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN--------GVPVRLSDTAGIREESNDGIE  335 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC--------CeEEEEEeccccccccCChhH
Confidence            67888999999999999999999999999876 999999999888777654        3589999999999821 1  2


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHh-------cCCCCCCCCEEEEEeCCCCCCC
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-------YNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~-------~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..|+.+++ +.+++||++++|+|+......++.. +.+.|+.       +...+...|+++|.||+|+...
T Consensus       336 ~~gI~rA~-k~~~~advi~~vvda~~~~t~sd~~-i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  336 ALGIERAR-KRIERADVILLVVDAEESDTESDLK-IARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHhHHHHH-HHHhhcCEEEEEecccccccccchH-HHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            34555555 6789999999999995544444332 2222222       2234456899999999999876

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.62  E-value=1.9e-15  Score=132.16  Aligned_cols=121  Identities=28%  Similarity=0.261  Sum_probs=87.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC-chhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~-gl~~~  350 (421)
                      .+|+++|.+|||||||+++|++.... +.+++.+|.+.....+...        ..++.++||||+.+....-. .....
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~DtpG~~~~~~~~~~~~~~~   73 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--------GIPVRLIDTAGIRETEDEIEKIGIER   73 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--------CEEEEEEECCCcCCCcchHHHHHHHH
Confidence            47999999999999999999987753 4778888877665555432        24789999999876532100 11123


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...++.++|++++|+|++++.+..+...+..        ...+|+++|+||+|+.+..+
T Consensus        74 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~  124 (157)
T cd04164          74 AREAIEEADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSE  124 (157)
T ss_pred             HHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCccc
Confidence            4466789999999999998766555543332        24689999999999986553

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01861 Rab6 Rab6 subfamily

Probab=99.62  E-value=2.6e-15  Score=133.07  Aligned_cols=118  Identities=14%  Similarity=0.089  Sum_probs=86.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|++.+......+.++.+.....+....      ....+.+|||||....       ......
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~D~~G~~~~-------~~~~~~   68 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLED------KTVRLQLWDTAGQERF-------RSLIPS   68 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECC------EEEEEEEEECCCcHHH-------HHHHHH
Confidence            799999999999999999999887666667777665554443321      1236899999996442       112334


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+..+|++++|+|++++.++++...+...+.....  .+.|+++|+||+|+..
T Consensus        69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~  119 (161)
T cd01861          69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSD  119 (161)
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccc
Confidence            56889999999999987766666666666544322  2689999999999954

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK15494 era GTPase Era; Provisional

Probab=99.61  E-value=1.9e-15  Score=152.83  Aligned_cols=121  Identities=31%  Similarity=0.343  Sum_probs=87.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~  350 (421)
                      .+|+++|.||||||||+|+|.+.+..+ ++.+.||.+...+.+...        +.++.+|||||+.+..+ ....+.+.
T Consensus        53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~--------~~qi~~~DTpG~~~~~~~l~~~~~r~  124 (339)
T PRK15494         53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK--------DTQVILYDTPGIFEPKGSLEKAMVRC  124 (339)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC--------CeEEEEEECCCcCCCcccHHHHHHHH
Confidence            489999999999999999999987654 778889987777766543        24799999999865322 22233344


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+..++.||+++||+|++..... ....+.+.+..     .+.|.++|+||+|+...
T Consensus       125 ~~~~l~~aDvil~VvD~~~s~~~-~~~~il~~l~~-----~~~p~IlViNKiDl~~~  175 (339)
T PRK15494        125 AWSSLHSADLVLLIIDSLKSFDD-ITHNILDKLRS-----LNIVPIFLLNKIDIESK  175 (339)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCH-HHHHHHHHHHh-----cCCCEEEEEEhhcCccc
Confidence            45668899999999998753221 11334455554     24688899999999653

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.61  E-value=5.9e-15  Score=133.48  Aligned_cols=127  Identities=24%  Similarity=0.282  Sum_probs=84.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      .|+++|.+|||||||+++|++...  ..+ ..|.......+...        ...+.++||||..+.       ...+..
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~~-~~t~g~~~~~~~~~--------~~~~~i~D~~G~~~~-------~~~~~~   62 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIP--KKV-APTVGFTPTKLRLD--------KYEVCIFDLGGGANF-------RGIWVN   62 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCC--ccc-cCcccceEEEEEEC--------CEEEEEEECCCcHHH-------HHHHHH
Confidence            378999999999999999997622  111 12222222223222        246899999996432       233556


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      +++.||+++||+|+++....+....++..+... ....++|+++|+||+|+.......+..+.+++
T Consensus        63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l  127 (167)
T cd04161          63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQH-PRVSGKPILVLANKQDKKNALLGADVIEYLSL  127 (167)
T ss_pred             HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcC-ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCc
Confidence            789999999999999876555555555544432 12347899999999999876655444444443

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.60  E-value=3.7e-15  Score=136.34  Aligned_cols=121  Identities=25%  Similarity=0.268  Sum_probs=84.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC--CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc----
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----  344 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~----  344 (421)
                      ..++|+++|.+|+|||||+|+|++..  ..+++.+++|.+.....++           ..+.++||||+.......    
T Consensus        17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtpG~~~~~~~~~~~~   85 (179)
T TIGR03598        17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-----------DGFRLVDLPGYGYAKVSKEEKE   85 (179)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-----------CcEEEEeCCCCccccCChhHHH
Confidence            34689999999999999999999875  3446778888776544331           258999999976432111    


Q ss_pred             --CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          345 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       345 --~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                        ..+...|++..+.++++++|+|++++....+. .+..++..     .++|+++|+||+|+....
T Consensus        86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~-----~~~pviiv~nK~D~~~~~  145 (179)
T TIGR03598        86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE-----RGIPVLIVLTKADKLKKS  145 (179)
T ss_pred             HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECcccCCHH
Confidence              11223445555567999999999876544443 33455544     368999999999997643

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01895 EngA2 EngA2 subfamily

Probab=99.60  E-value=6.8e-15  Score=130.38  Aligned_cols=121  Identities=26%  Similarity=0.349  Sum_probs=86.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh---
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG---  348 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~---  348 (421)
                      .+|+++|.+|+|||||+|+|++.... ..+++++|.......+...        +..+.++||||+.+..+....+.   
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~iiDtpG~~~~~~~~~~~e~~~   74 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--------GKKYTLIDTAGIRRKGKVEEGIEKYS   74 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--------CeeEEEEECCCCccccchhccHHHHH
Confidence            57999999999999999999987643 3667788776654444432        23689999999876533322221   


Q ss_pred             -HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 -RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 -~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                       ...+.++..+|++++|+|++++....... +...+..     .+.|+++|+||+|+...
T Consensus        75 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~nK~Dl~~~  128 (174)
T cd01895          75 VLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE-----EGKALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh-----cCCCEEEEEeccccCCc
Confidence             22345678899999999998876554433 3333332     35899999999999766

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.60  E-value=5.1e-15  Score=153.17  Aligned_cols=121  Identities=23%  Similarity=0.322  Sum_probs=91.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh--
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--  348 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~--  348 (421)
                      ..+|+++|.||+|||||+|+|++.+.. +.++++||.++....+...        +..+.++||||+.+..+....+.  
T Consensus       172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~e~~  243 (429)
T TIGR03594       172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN--------GKKYLLIDTAGIRRKGKVTEGVEKY  243 (429)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC--------CcEEEEEECCCccccccchhhHHHH
Confidence            468999999999999999999987754 4789999998776665443        23689999999976544332222  


Q ss_pred             --HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          349 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       349 --~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                        ...+++++.||++|+|+|++++....+.+. ...+..     .++|+++|+||+|+.+
T Consensus       244 ~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~-~~~~~~-----~~~~iiiv~NK~Dl~~  297 (429)
T TIGR03594       244 SVLRTLKAIERADVVLLVLDATEGITEQDLRI-AGLILE-----AGKALVIVVNKWDLVK  297 (429)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----cCCcEEEEEECcccCC
Confidence              123567899999999999998776666543 333333     3589999999999983

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04157 Arl6 Arl6 subfamily

Probab=99.60  E-value=8.8e-15  Score=129.57  Aligned_cols=120  Identities=19%  Similarity=0.215  Sum_probs=75.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|++.......+. .|.......+...        ...+.++||||..+.       ...+..
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~~~~~   64 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKG--------NLSFTAFDMSGQGKY-------RGLWEH   64 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEEC--------CEEEEEEECCCCHhh-------HHHHHH
Confidence            478999999999999999998653232222 1211111122211        246899999997543       112334


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhc-CCCCCCCCEEEEEeCCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY-NPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~-~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +++.+|+++||+|+++.........+...+... .....+.|+++|+||+|+.....
T Consensus        65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~  121 (162)
T cd04157          65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT  121 (162)
T ss_pred             HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC
Confidence            568899999999998765443333333333221 11114689999999999976543

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.60  E-value=1.2e-15  Score=145.94  Aligned_cols=110  Identities=37%  Similarity=0.564  Sum_probs=96.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      ++|+++|+|.+||||||..++..+...+.|.|||+....|++++..        ..|++.|.||++++|++++|.++...
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--------a~IQllDLPGIieGAsqgkGRGRQvi  134 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--------ANIQLLDLPGIIEGASQGKGRGRQVI  134 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--------ceEEEecCcccccccccCCCCCceEE
Confidence            6899999999999999999999999999999999999999998873        47999999999999999999999888


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE  392 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~  392 (421)
                      ...+.||+|++|+|++..  ..+-+.|..||+.....+.+
T Consensus       135 avArtaDlilMvLDatk~--e~qr~~le~ELe~vGiRLNk  172 (364)
T KOG1486|consen  135 AVARTADLILMVLDATKS--EDQREILEKELEAVGIRLNK  172 (364)
T ss_pred             EEeecccEEEEEecCCcc--hhHHHHHHHHHHHhceeccC
Confidence            888899999999999854  33445677888886655544

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.59  E-value=5.1e-15  Score=153.68  Aligned_cols=123  Identities=25%  Similarity=0.344  Sum_probs=92.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh-
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-  348 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~-  348 (421)
                      ...+|+++|.||||||||+|+|++.+.. +.++++||.+.....+...        +..+.++||||+.+..+....+. 
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~--------~~~~~lvDT~G~~~~~~~~~~~e~  243 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD--------GQKYTLIDTAGIRRKGKVTEGVEK  243 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC--------CeeEEEEECCCCCCCcchhhHHHH
Confidence            3579999999999999999999987754 4889999988765555432        24689999999976554433332 


Q ss_pred             ---HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 ---~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                         ...++++++||++|+|+|++.+....+.. +...+..     ..+|+++|+||+|+.+.
T Consensus       244 ~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~-----~~~~~ivv~NK~Dl~~~  299 (435)
T PRK00093        244 YSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE-----AGRALVIVVNKWDLVDE  299 (435)
T ss_pred             HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEECccCCCH
Confidence               23356789999999999999877666654 3344433     35899999999999843

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.59  E-value=7.5e-15  Score=131.05  Aligned_cols=119  Identities=21%  Similarity=0.286  Sum_probs=79.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc----cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i----a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +|+++|.+|+|||||+++|++.....    .....+|.....+.+.++        ...+.++||||+.+.       ..
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~   65 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG--------NARLKFWDLGGQESL-------RS   65 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEEC--------CEEEEEEECCCChhh-------HH
Confidence            47899999999999999998754321    122344555555555443        247999999997543       22


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+..+++.+|++++|+|+++.........+...+... ....+.|+++|+||+|+....
T Consensus        66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~  123 (167)
T cd04160          66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDAL  123 (167)
T ss_pred             HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCC
Confidence            3445678999999999998765444443333333221 122468999999999987653

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.59  E-value=9.2e-15  Score=134.56  Aligned_cols=129  Identities=24%  Similarity=0.290  Sum_probs=85.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++.+...  + .+|..+....+...        ..++.++||||....       ...+
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~--------~~~~~~~D~~G~~~~-------~~~~   78 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIG--------NIKFTTFDLGGHQQA-------RRLW   78 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEEC--------CEEEEEEECCCCHHH-------HHHH
Confidence            3689999999999999999999865432  2 23445554444332        247899999997543       2234


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      ..+++.+|+++||+|+++++..+.....+.++... ....+.|+++|+||+|+.......+....+++
T Consensus        79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l  145 (184)
T smart00178       79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAASEDELRYALGL  145 (184)
T ss_pred             HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCCHHHHHHHcCC
Confidence            45678999999999998765444433333332221 12356899999999999754433333344544

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.59  E-value=7.1e-15  Score=154.80  Aligned_cols=123  Identities=24%  Similarity=0.284  Sum_probs=90.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh-
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-  348 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~-  348 (421)
                      ...+|+++|.||||||||+|+|++.+.. +.++++||.++....+...        +..+.++||||+.+......+.. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~--------~~~~~l~DTaG~~~~~~~~~~~e~  281 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG--------GKTWRFVDTAGLRRRVKQASGHEY  281 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC--------CEEEEEEECCCccccccccchHHH
Confidence            3479999999999999999999998753 5889999998876666543        24689999999865432211111 


Q ss_pred             -H--HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 -R--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 -~--~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                       .  .....++.||++++|+|+++..+.++...+ ..+..     .++|+|+|+||+|+...
T Consensus       282 ~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~-~~~~~-----~~~piIiV~NK~Dl~~~  337 (472)
T PRK03003        282 YASLRTHAAIEAAEVAVVLIDASEPISEQDQRVL-SMVIE-----AGRALVLAFNKWDLVDE  337 (472)
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECcccCCh
Confidence             0  112456899999999999988777666543 33333     46899999999999754

>cd00154 Rab Rab family

Probab=99.58  E-value=1.4e-14  Score=126.06  Aligned_cols=117  Identities=22%  Similarity=0.202  Sum_probs=81.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|.+.+......+.++.+.....+...      .....+.++|+||.....       .....
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~~l~D~~g~~~~~-------~~~~~   68 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID------GKTVKLQIWDTAGQERFR-------SITPS   68 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC------CEEEEEEEEecCChHHHH-------HHHHH
Confidence            68999999999999999999887655433333333222222221      112468999999975431       12344


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      .++.+|++++|+|++++...+....+...+.....  ...|+++|+||+|+.
T Consensus        69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~  118 (159)
T cd00154          69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE  118 (159)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence            56789999999999886656666666666655432  458999999999996

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.58  E-value=9.3e-15  Score=161.03  Aligned_cols=137  Identities=23%  Similarity=0.274  Sum_probs=98.7

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCch
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL  347 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl  347 (421)
                      ...++|+++|.||||||||+|+|++.+..+ .++|++|.+...+.....        +..+.+|||||+..... ....+
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~~  344 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA--------GTDFKLVDTGGWEADVEGIDSAI  344 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC--------CEEEEEEeCCCcCCCCccHHHHH
Confidence            456789999999999999999999887654 789999988766655432        24789999999864311 11123


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN  420 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~  420 (421)
                      .......++.||++|||+|++......+ ..+.+.|+.     .++|+++|+||+|+.........+..+|+.
T Consensus       345 ~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~  411 (712)
T PRK09518        345 ASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-----AGKPVVLAVNKIDDQASEYDAAEFWKLGLG  411 (712)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-----cCCCEEEEEECcccccchhhHHHHHHcCCC
Confidence            3334556789999999999986543333 345566664     469999999999987655455566666654

>cd01868 Rab11_like Rab11-like

Probab=99.58  E-value=1.1e-14  Score=129.97  Aligned_cols=121  Identities=19%  Similarity=0.116  Sum_probs=84.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|.+.+......|.++.+.....+....      ....+.++||||..+..       ....
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~~-------~~~~   70 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG------KTIKAQIWDTAGQERYR-------AITS   70 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC------EEEEEEEEeCCChHHHH-------HHHH
Confidence            5899999999999999999998775544444444333322332221      12368999999975431       1123


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.|+++++|+|+++..+.+++..+..++.....  .+.|+++|+||+|+....
T Consensus        71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~  124 (165)
T cd01868          71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLR  124 (165)
T ss_pred             HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc
Confidence            456789999999999987766666666666655432  358999999999997543

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01866 Rab2 Rab2 subfamily

Probab=99.57  E-value=1.6e-14  Score=130.18  Aligned_cols=121  Identities=17%  Similarity=0.058  Sum_probs=83.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|++||.+|||||||++++++.+......+..+.+.....+....      ....+.+|||||..+.       ....
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~   70 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG------KQIKLQIWDTAGQESF-------RSIT   70 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCcHHH-------HHHH
Confidence            36899999999999999999998765443323222332222222211      1246899999996432       2223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+++.+|++++|+|++++.+.+++..|..++..+.  ..+.|+++|+||+|+...
T Consensus        71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~  124 (168)
T cd01866          71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESR  124 (168)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccc
Confidence            456688999999999998777777777777776643  246899999999999743

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.57  E-value=2e-14  Score=127.98  Aligned_cols=117  Identities=23%  Similarity=0.186  Sum_probs=81.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      +.|+++|.+|+|||||+++|+..+......+++|.+.....+....     .....+.++||||..+.       .....
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~iiDtpG~~~~-------~~~~~   68 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-----LKIPGITFIDTPGHEAF-------TNMRA   68 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-----CCcceEEEEeCCCcHHH-------HHHHH
Confidence            3589999999999999999998776555556667655444444320     01247899999997542       11223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..+|++++|+|+++....+.+.. ...+..     .++|+++|+||+|+...
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~-~~~~~~-----~~~p~ivv~NK~Dl~~~  117 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEA-IKLAKA-----ANVPFIVALNKIDKPNA  117 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHH-HHHHHH-----cCCCEEEEEEceecccc
Confidence            45678999999999987654444333 334443     46899999999998754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04163 Era Era subfamily

Probab=99.57  E-value=1.7e-14  Score=126.36  Aligned_cols=121  Identities=32%  Similarity=0.399  Sum_probs=83.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~~  350 (421)
                      .+|+++|.+|||||||+|+|++.+..+ .+.+.+|.......+...        ...+.++||||+.+.... ...+...
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~~~~~~~~~~~~~~~   75 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--------DAQIIFVDTPGIHKPKKKLGERMVKA   75 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--------CeEEEEEECCCCCcchHHHHHHHHHH
Confidence            479999999999999999999877543 555666665555444322        246899999998765322 1112233


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ....+..+|++++|+|++++... ....+.+.+..     .+.|+++|+||+|+...
T Consensus        76 ~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~  126 (168)
T cd04163          76 AWSALKDVDLVLFVVDASEPIGE-GDEFILELLKK-----SKTPVILVLNKIDLVKD  126 (168)
T ss_pred             HHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHH-----hCCCEEEEEEchhcccc
Confidence            45567889999999999876322 22334445544     25899999999999843

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04171 SelB SelB subfamily

Probab=99.57  E-value=1.9e-14  Score=127.26  Aligned_cols=115  Identities=24%  Similarity=0.212  Sum_probs=76.2

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .|+++|.+|||||||+++|++.....   ...+.+|.+.....+....       ...+.+|||||+.+.       ...
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~DtpG~~~~-------~~~   67 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-------GKRLGFIDVPGHEKF-------IKN   67 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-------CcEEEEEECCChHHH-------HHH
Confidence            58999999999999999999754322   2234667666554444321       247899999997432       233


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ....+..||++++|+|+++....+..+. ...++..    ..+|+++|+||+|+...
T Consensus        68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~-~~~~~~~----~~~~~ilv~NK~Dl~~~  119 (164)
T cd04171          68 MLAGAGGIDLVLLVVAADEGIMPQTREH-LEILELL----GIKRGLVVLTKADLVDE  119 (164)
T ss_pred             HHhhhhcCCEEEEEEECCCCccHhHHHH-HHHHHHh----CCCcEEEEEECccccCH
Confidence            4456778999999999976322222222 2233332    12589999999999764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.57  E-value=2.2e-14  Score=125.04  Aligned_cols=126  Identities=25%  Similarity=0.303  Sum_probs=78.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+|+|.+|||||||+++|++.+......|  |.......+...        ...+.++||||..+.       ...+..
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~--------~~~~~~~D~~g~~~~-------~~~~~~   63 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKG--------NVTLKVWDLGGQPRF-------RSMWER   63 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEEC--------CEEEEEEECCCCHhH-------HHHHHH
Confidence            489999999999999999998754332222  222222222221        136899999997543       223345


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGI  417 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~l  417 (421)
                      ++..+|++++|+|+++.........++..+... ....++|+++|+||+|+.......+.+..+
T Consensus        64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  126 (159)
T cd04159          64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSVDELIEQM  126 (159)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCHHHHHHHh
Confidence            678899999999998754433332222222211 122468999999999987654433333333

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.57  E-value=2.1e-14  Score=127.26  Aligned_cols=120  Identities=17%  Similarity=0.137  Sum_probs=80.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|++.+......+..+.+.....+...      .....+.+|||||..+..       .....
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~-------~~~~~   68 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR------NKEVRVNFFDLSGHPEYL-------EVRNE   68 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC------CeEEEEEEEECCccHHHH-------HHHHH
Confidence            79999999999999999999876322111211112111122211      112478999999975431       11223


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC---CCCCCEEEEEeCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD---YLERPFIVVLNKIDLPE  406 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~---l~~kP~IIVlNK~Dl~~  406 (421)
                      .+..+|++++|+|++++.+.+....+..++..+...   ....|+++|+||+|+..
T Consensus        69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  124 (168)
T cd04119          69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK  124 (168)
T ss_pred             HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence            467899999999999877777777777777665432   24689999999999974

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.56  E-value=2.7e-14  Score=129.84  Aligned_cols=118  Identities=20%  Similarity=0.163  Sum_probs=78.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|+|||||+++|+..+.. .  ..+|.......+...        ...+.++||||..+.       ...+
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~--------~~~~~l~D~~G~~~~-------~~~~   76 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYK--------NIRFLMWDIGGQESL-------RSSW   76 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEEC--------CeEEEEEECCCCHHH-------HHHH
Confidence            358999999999999999999876532 1  123443333333332        247899999997532       3334


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.||+++||+|+++..........+..+... ..+.+.|+++|+||+|+....
T Consensus        77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~~  132 (174)
T cd04153          77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGAM  132 (174)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCCC
Confidence            56678999999999998765443332222222111 123468999999999997643

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01865 Rab3 Rab3 subfamily

Probab=99.56  E-value=2.1e-14  Score=128.85  Aligned_cols=121  Identities=14%  Similarity=0.088  Sum_probs=80.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.+......+..+.+...-.+...      .....+.+|||||..+.       .....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~~l~Dt~g~~~~-------~~~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN------DKRVKLQIWDTAGQERY-------RTITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC------CEEEEEEEEECCChHHH-------HHHHH
Confidence            589999999999999999999876432222211111111111111      01246899999997543       12234


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.+|++++|+|+++..+.+.+..+..++..+..  ...|+++|+||+|+.+..
T Consensus        69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~  122 (165)
T cd01865          69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMEDER  122 (165)
T ss_pred             HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCccc
Confidence            567899999999999887666666666666655432  358899999999997654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.56  E-value=1.9e-14  Score=128.79  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=82.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|+|||||++++.+........+..+.+.....+....      ....+.++||||....       .....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~D~~G~~~~-------~~~~~   69 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG------KTIKLQIWDTAGQERF-------RTITS   69 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCcHhH-------HHHHH
Confidence            5899999999999999999998764432223222222222222111      1246899999996542       11223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|+++.++...+..+..++..+..  .+.|+++|+||+|+....
T Consensus        70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~  123 (166)
T cd01869          70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDKR  123 (166)
T ss_pred             HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhccccc
Confidence            456789999999999987777777777777766542  358999999999986543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.56  E-value=2e-14  Score=129.25  Aligned_cols=122  Identities=16%  Similarity=0.097  Sum_probs=82.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||++++++.+......+..+.+.....+....      ....+.++||||.....       ...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~D~~g~~~~~-------~~~   69 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG------KKIKLQIWDTAGQERFR-------TIT   69 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC------EEEEEEEEeCCchHHHH-------HHH
Confidence            36899999999999999999998764332222221111111222111      12468999999965431       122


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.||++++|+|++++.+.+.+..+..++..+..  .+.|+++|+||+|+.+..
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~  124 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKR  124 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccccc
Confidence            3557889999999999887777776667776666532  468999999999998543

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.56  E-value=2.5e-14  Score=126.63  Aligned_cols=119  Identities=20%  Similarity=0.140  Sum_probs=82.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|.+........+..+.+.....+....      ....+.++|+||.....       .....
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~~-------~~~~~   68 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDG------KRVKLQIWDTAGQERFR-------SITSS   68 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEECCChHHHH-------HHHHH
Confidence            799999999999999999998765433333333332222222211      12368899999965431       11223


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+..||++++|+|++++.+.+.+..+..++..+..  .+.|+++|+||+|+...
T Consensus        69 ~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~  120 (164)
T smart00175       69 YYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQ  120 (164)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccc
Confidence            45779999999999987766666666666666542  36899999999998763

Rab GTPases are implicated in vesicle trafficking.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.55  E-value=3e-14  Score=125.50  Aligned_cols=121  Identities=20%  Similarity=0.164  Sum_probs=79.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++++.+.. ..+..|+.+.....+..+.      ....+.+|||||..+.       .....
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~l~~   67 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDG------ETCLLDILDTAGQEEY-------SAMRD   67 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECC------EEEEEEEEECCCCcch-------HHHHH
Confidence            47999999999999999999976532 2333333222111121111      1135788999997542       11223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.+|++++|+|+++..+.+++..+...+..+. ...+.|+++|+||+|+....
T Consensus        68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~  122 (162)
T cd04138          68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAART  122 (162)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccce
Confidence            45678999999999998766666666666665543 12468999999999997643

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04142 RRP22 RRP22 subfamily

Probab=99.55  E-value=2.7e-14  Score=133.69  Aligned_cols=128  Identities=18%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNFL  352 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~~fL  352 (421)
                      +|+|+|.+|||||||++++.+.+......|.++.+.....+..+.      ....+.+|||||+.+.... .........
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~------~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~   75 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSG------RVYDLHILDVPNMQRYPGTAGQEWMDPRF   75 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECC------EEEEEEEEeCCCcccCCccchhHHHHHHH
Confidence            789999999999999999987654332233332222111222111      1236889999998543210 000111123


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.||++++|+|++++++.+....+++++..+.. ...+.|+++|+||+|+...
T Consensus        76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~  131 (198)
T cd04142          76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH  131 (198)
T ss_pred             hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence            457889999999999988777777767666655431 1246899999999999653

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04114 Rab30 Rab30 subfamily

Probab=99.55  E-value=3.2e-14  Score=127.27  Aligned_cols=125  Identities=18%  Similarity=0.101  Sum_probs=83.3

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +...+|+++|.+|||||||+++++.........+..+.+.....+....      ....+.++|+||..+.       ..
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~~-------~~   71 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKG------EKIKLQIWDTAGQERF-------RS   71 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEECCCcHHH-------HH
Confidence            3457999999999999999999986543322223222233222232221      1235789999997543       12


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .....+..+|++++|+|+++..+.+....+..++..+..  ...|+++|+||+|+....+
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~  129 (169)
T cd04114          72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERRE  129 (169)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccc
Confidence            223457889999999999876666666666666665432  3588999999999975544

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01864 Rab19 Rab19 subfamily

Probab=99.55  E-value=2.7e-14  Score=127.77  Aligned_cols=121  Identities=15%  Similarity=0.086  Sum_probs=80.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++..........+..+.+...-.+....      ....+.++||||....       .....
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~-------~~~~~   70 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEG------KRVKLQIWDTAGQERF-------RTITQ   70 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECC------EEEEEEEEECCChHHH-------HHHHH
Confidence            6899999999999999999987653221111111122222222211      1236899999996442       11223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+..+|++++|+|++++.+.+....+..++.....  .+.|+++|+||+|+....
T Consensus        71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~  124 (165)
T cd01864          71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQR  124 (165)
T ss_pred             HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccccc
Confidence            456789999999999987766666666666655432  468999999999997553

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.55  E-value=2.2e-14  Score=158.03  Aligned_cols=122  Identities=27%  Similarity=0.335  Sum_probs=91.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh--
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--  348 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~--  348 (421)
                      ..+|+++|.||||||||+|+|++.+.. +.++++||.++....+..+        +..+.++||||+.+......+..  
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~--------~~~~~liDTaG~~~~~~~~~~~e~~  521 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID--------GEDWLFIDTAGIKRRQHKLTGAEYY  521 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC--------CCEEEEEECCCcccCcccchhHHHH
Confidence            479999999999999999999998864 4889999998877665543        24688999999875432211111  


Q ss_pred             --HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 --~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        ...+.++++||++++|+|+++....++...+ ..+..     .++|+++|+||+|+.+.
T Consensus       522 ~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-----~~~piIiV~NK~DL~~~  576 (712)
T PRK09518        522 SSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-----AGRALVLVFNKWDLMDE  576 (712)
T ss_pred             HHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEEchhcCCh
Confidence              1123557899999999999988776665533 33433     36899999999999764

>cd01863 Rab18 Rab18 subfamily

Probab=99.55  E-value=3.7e-14  Score=125.86  Aligned_cols=119  Identities=22%  Similarity=0.155  Sum_probs=81.2

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +|+++|.+|||||||+++|++.....  .+....+.......+..        ....+.++||||..+..       ...
T Consensus         2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~D~~g~~~~~-------~~~   66 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG--------KKVKLAIWDTAGQERFR-------TLT   66 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC--------EEEEEEEEECCCchhhh-------hhh
Confidence            78999999999999999999876433  22222222222111211        12468999999965431       112


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...++.+|++++|+|++++.+.+....+.+++..+.. ..+.|+++|+||+|+....
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~  122 (161)
T cd01863          67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE  122 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc
Confidence            3446789999999999987777777777777766542 2468899999999998443

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04151 Arl1 Arl1 subfamily

Probab=99.55  E-value=3.9e-14  Score=126.04  Aligned_cols=115  Identities=19%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|+|||||+++|+..+..  .+ .+|.......+...        ..++.++||||..+.       ...+..
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~~~~   62 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV--TT-IPTIGFNVETVTYK--------NLKFQVWDLGGQTSI-------RPYWRC   62 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc--Cc-CCccCcCeEEEEEC--------CEEEEEEECCCCHHH-------HHHHHH
Confidence            5899999999999999999765432  11 22333333333322        247899999997543       223445


Q ss_pred             hcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +++.+|++++|+|++++...... +.+...++..  ...++|+++|+||+|+..+.
T Consensus        63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~  116 (158)
T cd04151          63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGAL  116 (158)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCC
Confidence            67899999999999875432222 2222233221  22468999999999997654

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.55  E-value=3.9e-14  Score=127.15  Aligned_cols=116  Identities=21%  Similarity=0.242  Sum_probs=75.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||++++...+..  .+ .+|.......+...        ...+.+|||||..+.       ...+..
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~--~~-~pt~g~~~~~~~~~--------~~~~~l~D~~G~~~~-------~~~~~~   63 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYK--------NISFTVWDVGGQDKI-------RPLWRH   63 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc--cc-CCCCCcceEEEEEC--------CEEEEEEECCCCHhH-------HHHHHH
Confidence            7999999999999999999754432  22 12222222223222        246899999997442       223345


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +++.||+++||+|+++....++...++..+... ......|+++|+||+|+.+..
T Consensus        64 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~  117 (159)
T cd04150          64 YFQNTQGLIFVVDSNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAM  117 (159)
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCC
Confidence            578999999999998766555444433333221 122458999999999997543

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04136 Rap_like Rap-like subfamily

Probab=99.54  E-value=3.4e-14  Score=125.87  Aligned_cols=120  Identities=18%  Similarity=0.195  Sum_probs=81.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++..... ...++.|+.+.....+..+.      ....+.+|||||..+..    .+.   .
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~~---~   67 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDG------QQCMLEILDTAGTEQFT----AMR---D   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhhEEEEEEECC------EEEEEEEEECCCccccc----hHH---H
Confidence            4799999999999999999987542 22333333222222222211      12357899999975431    122   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|+++..+.++...+.+++..+.. ..+.|+++|+||+|+...
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  121 (163)
T cd04136          68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDE  121 (163)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence            346789999999999987777777777777766432 246899999999999754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04109 Rab28 Rab28 subfamily

Probab=99.54  E-value=4.9e-14  Score=132.93  Aligned_cols=122  Identities=14%  Similarity=0.070  Sum_probs=83.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|+.........|..+.+.....+..+..     ....+.||||||....    ..+   +-.
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-----~~~~~~i~Dt~G~~~~----~~l---~~~   69 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-----LNVTLQVWDIGGQSIG----GKM---LDK   69 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-----CEEEEEEEECCCcHHH----HHH---HHH
Confidence            7899999999999999999876533222333334443333332210     1247899999996432    112   223


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kP~IIVlNK~Dl~~~  407 (421)
                      ++..||++|+|+|++++.+.+....+..++..+... ....|+++|+||+|+...
T Consensus        70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~  124 (215)
T cd04109          70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN  124 (215)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence            467899999999999887777777777777765432 234678999999999754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.54  E-value=1.3e-14  Score=155.11  Aligned_cols=118  Identities=32%  Similarity=0.475  Sum_probs=96.2

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccc--cccccCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE--GAHLGKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie--~a~~~~gl~~~f  351 (421)
                      +|+++|.||+|||||+|+||+++..+++||+.|.+-..|.+...        +.++.++|+||..+  ..++++.+.++|
T Consensus         5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~--------~~~i~ivDLPG~YSL~~~S~DE~Var~~   76 (653)
T COG0370           5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK--------GHEIEIVDLPGTYSLTAYSEDEKVARDF   76 (653)
T ss_pred             eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec--------CceEEEEeCCCcCCCCCCCchHHHHHHH
Confidence            59999999999999999999999999999999999999998865        34799999999875  335567777777


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +.. ++.|+++.|+|+++-  +..+....+.++      .++|+++++|++|..+.+
T Consensus        77 ll~-~~~D~ivnVvDAtnL--eRnLyltlQLlE------~g~p~ilaLNm~D~A~~~  124 (653)
T COG0370          77 LLE-GKPDLIVNVVDATNL--ERNLYLTLQLLE------LGIPMILALNMIDEAKKR  124 (653)
T ss_pred             Hhc-CCCCEEEEEcccchH--HHHHHHHHHHHH------cCCCeEEEeccHhhHHhc
Confidence            663 678999999999863  334443444444      579999999999987654

>cd04158 ARD1 ARD1 subfamily

Probab=99.54  E-value=4.4e-14  Score=127.75  Aligned_cols=115  Identities=20%  Similarity=0.242  Sum_probs=77.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|++...  .. ..+|.......+...        ...+.++||||..+.       ...+..
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~--------~~~i~l~Dt~G~~~~-------~~~~~~   62 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYK--------NLKFTIWDVGGKHKL-------RPLWKH   62 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEEC--------CEEEEEEECCCChhc-------chHHHH
Confidence            588999999999999999998642  12 234443333333332        247899999997543       223445


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +++.+|+++||+|++++...++...++.++... ....+.|+++|+||+|+...
T Consensus        63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~  115 (169)
T cd04158          63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTE-KELRDALLLIFANKQDVAGA  115 (169)
T ss_pred             HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcC-hhhCCCCEEEEEeCcCcccC
Confidence            678899999999999765555444433333221 12245799999999999754

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.54  E-value=3.1e-14  Score=157.58  Aligned_cols=121  Identities=28%  Similarity=0.441  Sum_probs=89.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~  350 (421)
                      .+|+++|.||||||||+|+|++.+..++++|++|.+...+.+...        +.++.++||||+.+....  ...+.+.
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--------~~~i~lvDtPG~ysl~~~~~~~s~~E~   75 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--------DHQVTLVDLPGTYSLTTISSQTSLDEQ   75 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--------ceEEEEEECCCccccccccccccHHHH
Confidence            479999999999999999999998888999999999888887653        247999999999764321  1122222


Q ss_pred             HHH-h--cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          351 FLR-H--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       351 fL~-~--i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..+ +  .+.+|++++|+|+++.+  .+. .+..++.+     .++|+++|+||+|+.+...
T Consensus        76 i~~~~l~~~~aD~vI~VvDat~le--r~l-~l~~ql~e-----~giPvIvVlNK~Dl~~~~~  129 (772)
T PRK09554         76 IACHYILSGDADLLINVVDASNLE--RNL-YLTLQLLE-----LGIPCIVALNMLDIAEKQN  129 (772)
T ss_pred             HHHHHHhccCCCEEEEEecCCcch--hhH-HHHHHHHH-----cCCCEEEEEEchhhhhccC
Confidence            211 1  25799999999998643  222 24445544     4689999999999875443

>cd00880 Era_like Era (E

Probab=99.54  E-value=8.6e-14  Score=119.93  Aligned_cols=121  Identities=33%  Similarity=0.404  Sum_probs=88.2

Q ss_pred             ccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhc
Q 014655          277 LVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL  355 (421)
Q Consensus       277 LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i  355 (421)
                      ++|.+|+|||||+++|++.... +.+++.+|.......+....       ...+.++||||+.+...........+...+
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~   73 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-------LGPVVLIDTPGIDEAGGLGREREELARRVL   73 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-------CCcEEEEECCCCCccccchhhHHHHHHHHH
Confidence            5899999999999999988765 57777778776665554321       247999999999876554433334555667


Q ss_pred             ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          356 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       356 ~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      ..+|++++|+|++......... +......     ...|+++|+||+|+....+.
T Consensus        74 ~~~d~il~v~~~~~~~~~~~~~-~~~~~~~-----~~~~~ivv~nK~D~~~~~~~  122 (163)
T cd00880          74 ERADLILFVVDADLRADEEEEK-LLELLRE-----RGKPVLLVLNKIDLLPEEEE  122 (163)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCeEEEEEEccccCChhhH
Confidence            8899999999999876544433 2333332     46899999999999876543

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04113 Rab4 Rab4 subfamily

Probab=99.54  E-value=3.8e-14  Score=125.96  Aligned_cols=121  Identities=17%  Similarity=0.042  Sum_probs=81.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|.+.+......+..+.+.....+....      ....+.+|||||..+..       ....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~l~D~~G~~~~~-------~~~~   67 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG------KRVKLQIWDTAGQERFR-------SVTR   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC------EEEEEEEEECcchHHHH-------HhHH
Confidence            3789999999999999999998764332222222211111222111      12468999999975431       1223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.+|++++|+|++++...+.+..+..++..+..  .+.|+++|+||+|+....
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~  121 (161)
T cd04113          68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLADQR  121 (161)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcchhc
Confidence            456789999999999987777666666666654432  468999999999997643

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04112 Rab26 Rab26 subfamily

Probab=99.54  E-value=3.7e-14  Score=131.00  Aligned_cols=119  Identities=17%  Similarity=0.137  Sum_probs=83.4

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce-eecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g-~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      +|+++|.+|||||||++++...+.....++.|+...... .+..+.      ....+.||||||....       .....
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~   68 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG------VKVKLQIWDTAGQERF-------RSVTH   68 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC------EEEEEEEEeCCCcHHH-------HHhhH
Confidence            789999999999999999998776544454444322111 122111      1246899999996432       11223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..+|++++|+|+++..+++++..+...+..+..  ...|+++|+||+|+...
T Consensus        69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~  121 (191)
T cd04112          69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGE  121 (191)
T ss_pred             HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhc
Confidence            456789999999999987777777777777776543  36899999999999643

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.54  E-value=2.9e-14  Score=133.05  Aligned_cols=123  Identities=30%  Similarity=0.320  Sum_probs=90.8

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC--CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc--cc---
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HL---  343 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a--~~---  343 (421)
                      ..+.|+|+|.+|||||||||+|++.+  ++++..|+.|..++...+.           ..+.++|+||+--..  .+   
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-----------~~~~lVDlPGYGyAkv~k~~~e   91 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-----------DELRLVDLPGYGYAKVPKEVKE   91 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-----------CcEEEEeCCCcccccCCHHHHH
Confidence            45689999999999999999999987  6779999999998877664           348999999974321  10   


Q ss_pred             -cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          344 -GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       344 -~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                       ...+...|++.=+.-.++++++|+.++....|. .+.++|..     .+.|++||+||+|.....+.
T Consensus        92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~-----~~i~~~vv~tK~DKi~~~~~  153 (200)
T COG0218          92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE-----LGIPVIVVLTKADKLKKSER  153 (200)
T ss_pred             HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCeEEEEEccccCChhHH
Confidence             111222333333446788999999886555454 45566666     46999999999999886554

>cd04123 Rab21 Rab21 subfamily

Probab=99.54  E-value=5.3e-14  Score=123.92  Aligned_cols=120  Identities=19%  Similarity=0.154  Sum_probs=81.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|+|||||+++|.+........+.++.......+...      .....+.++|+||.....    .+..   .
T Consensus         2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~g~~~~~----~~~~---~   68 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG------GKRIDLAIWDTAGQERYH----ALGP---I   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC------CEEEEEEEEECCchHHHH----HhhH---H
Confidence            78999999999999999999876543222222222212222211      112368999999965431    1222   2


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+..+|++++|+|+++.+..++...+.+++..+...  +.|+++|+||+|+....
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~  121 (162)
T cd04123          69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQR  121 (162)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc
Confidence            346799999999999887777777777777776542  68999999999997543

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PRK04213 GTP-binding protein; Provisional

Probab=99.53  E-value=6.9e-14  Score=129.60  Aligned_cols=119  Identities=27%  Similarity=0.268  Sum_probs=78.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc----cCchh
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----GKGLG  348 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~----~~gl~  348 (421)
                      .+|+++|.+|||||||+|+|++........|++|..+....+            ..+.+|||||+......    .+.+.
T Consensus        10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~------------~~~~l~Dt~G~~~~~~~~~~~~~~~~   77 (201)
T PRK04213         10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDW------------GDFILTDLPGFGFMSGVPKEVQEKIK   77 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEee------------cceEEEeCCccccccccCHHHHHHHH
Confidence            589999999999999999999987666778888876543221            15899999996321110    01111


Q ss_pred             H---HHH-HhcccCCEEEEEeeCCCCCC----h------hhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          349 R---NFL-RHLRRTRLLVHVIDAAAENP----V------NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       349 ~---~fL-~~i~radvIl~VvD~s~~~~----~------~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .   .++ +.+..++++++|+|++....    +      .....+...+..     .++|+++|+||+|+....
T Consensus        78 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~  146 (201)
T PRK04213         78 DEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR  146 (201)
T ss_pred             HHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH
Confidence            1   122 24556789999999865211    1      011223444443     368999999999997543

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.53  E-value=7.5e-14  Score=124.24  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=81.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC-CCccCCCCeee-eccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl-~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ++|+++|.++||||||+++|.... ....+|..|+- +...-.+....     .....+.+|||||.....    .+   
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~----~~---   68 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-----DNTVELFIFDSAGQELYS----DM---   68 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-----CCEEEEEEEECCCHHHHH----HH---
Confidence            379999999999999999998642 23345554442 21111121110     113579999999964431    12   


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+++++|++++|+|+++..+.+.+..+.+.+..+.   .+.|+++|+||+|+....
T Consensus        69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~  123 (164)
T cd04101          69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKA  123 (164)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc
Confidence            2345789999999999998776666666666666543   468999999999997553

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.53  E-value=7.2e-14  Score=123.85  Aligned_cols=116  Identities=28%  Similarity=0.281  Sum_probs=74.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++++..+.. ...  +|.......+....       ...+.++||||..+.       ...+..
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~--~t~~~~~~~~~~~~-------~~~l~i~D~~G~~~~-------~~~~~~   63 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELV-TTI--PTVGFNVEMLQLEK-------HLSLTVWDVGGQEKM-------RTVWKC   63 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcc-ccc--CccCcceEEEEeCC-------ceEEEEEECCCCHhH-------HHHHHH
Confidence            4889999999999999999987632 111  12211122222111       247999999997432       233455


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ++..+|++++|+|++++........+..++... ....+.|+++|+||+|+...
T Consensus        64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~  116 (160)
T cd04156          64 YLENTDGLVYVVDSSDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGA  116 (160)
T ss_pred             HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccC
Confidence            688999999999998765444443333332221 12246899999999999654

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.53  E-value=6.3e-14  Score=124.16  Aligned_cols=116  Identities=19%  Similarity=0.243  Sum_probs=76.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||++++++....  .+ .+|.......+...        ...+.+|||||....       ...+..
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~D~~G~~~~-------~~~~~~   62 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV--TT-IPTIGFNVETVEYK--------NVSFTVWDVGGQDKI-------RPLWKH   62 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCcCcceEEEEEC--------CEEEEEEECCCChhh-------HHHHHH
Confidence            5899999999999999999988632  11 22222222223222        246899999997653       222344


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+..+|++++|+|++++........++..+.... .....|+++|+||+|+....
T Consensus        63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~  116 (158)
T cd00878          63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGAL  116 (158)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcccc
Confidence            5678999999999997654444433333332211 13578999999999998654

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.53  E-value=5.5e-14  Score=124.72  Aligned_cols=121  Identities=20%  Similarity=0.136  Sum_probs=80.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|+|||||++++.+... ...++.|+.+.....+...      .....+.++||||..+.       .....
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~-------~~~~~   68 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEID------GQWAILDILDTAGQEEF-------SAMRE   68 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEEC------CEEEEEEEEECCCCcch-------hHHHH
Confidence            4899999999999999999987543 3344444332211111111      11236889999997543       11223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .++..+|++++|+|+++..+.+....+..++.... ...+.|+++|+||+|+....
T Consensus        69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~Dl~~~~  123 (164)
T cd04145          69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK-DRDEFPMILVGNKADLEHQR  123 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCCEEEEeeCccccccc
Confidence            45678999999999998766666666665555432 12468999999999997643

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04122 Rab14 Rab14 subfamily

Probab=99.52  E-value=6.7e-14  Score=125.53  Aligned_cols=120  Identities=19%  Similarity=0.107  Sum_probs=81.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc-ceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+++|.+|||||||++++...+. ...++.|+.... .-.+....      ....+.+|||||..+.       ....
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~   68 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVNG------QKIKLQIWDTAGQERF-------RAVT   68 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEECC------EEEEEEEEECCCcHHH-------HHHH
Confidence            5899999999999999999987643 233443322111 11111111      1246899999997543       2223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.+|++++|+|++++.+.+.+..+..++.....  .+.|+++|+||+|+....
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~  123 (166)
T cd04122          69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQR  123 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc
Confidence            4557889999999999987776766666666654432  357899999999997654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd00879 Sar1 Sar1 subfamily

Probab=99.52  E-value=1e-13  Score=127.07  Aligned_cols=117  Identities=26%  Similarity=0.342  Sum_probs=79.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      -.+|+++|.+|||||||+++|++.+..  . ..+|..+..+.+...        +..+.++||||....       ...+
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~--~-~~~T~~~~~~~i~~~--------~~~~~l~D~~G~~~~-------~~~~   80 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLA--Q-HVPTLHPTSEELTIG--------NIKFKTFDLGGHEQA-------RRLW   80 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccCcceEEEEEC--------CEEEEEEECCCCHHH-------HHHH
Confidence            368999999999999999999986642  1 223555555555443        246899999996442       1234


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+++.+|++++|+|+++....+.......++... ....+.|+++|+||+|+...
T Consensus        81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~  135 (190)
T cd00879          81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGA  135 (190)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCC
Confidence            45678899999999998764443333333333221 12346899999999999754

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04149 Arf6 Arf6 subfamily

Probab=99.52  E-value=8.8e-14  Score=126.21  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=74.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|+..+..  .+. +|.......+...        ...+.+|||||....       ...+.
T Consensus        10 ~kv~i~G~~~~GKTsli~~l~~~~~~--~~~-~t~g~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~~~~   71 (168)
T cd04149          10 MRILMLGLDAAGKTTILYKLKLGQSV--TTI-PTVGFNVETVTYK--------NVKFNVWDVGGQDKI-------RPLWR   71 (168)
T ss_pred             cEEEEECcCCCCHHHHHHHHccCCCc--ccc-CCcccceEEEEEC--------CEEEEEEECCCCHHH-------HHHHH
Confidence            58999999999999999999865421  121 1221222222221        247999999997542       22233


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..||+++||+|++++...+....++.++.. .....+.|+++|+||+|+.+.
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~-~~~~~~~piilv~NK~Dl~~~  125 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIIN-DREMRDALLLVFANKQDLPDA  125 (168)
T ss_pred             HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhc-CHhhcCCcEEEEEECcCCccC
Confidence            457889999999999986555444333222211 111246899999999999754

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00876 Ras Ras family

Probab=99.52  E-value=6.4e-14  Score=123.15  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=84.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|++.. ....+..++.+.....+....      ....+.++|+||..+.       ......
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~~   66 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDG------ETYTLDILDTAGQEEF-------SAMRDL   66 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECC------EEEEEEEEECCChHHH-------HHHHHH
Confidence            58899999999999999999776 445555555544333333221      1246899999997653       112234


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++.+|++++|+|++++.+..+...++..+...... ...|+++|+||+|+...
T Consensus        67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~  119 (160)
T cd00876          67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENE  119 (160)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCccccc
Confidence            567899999999999877666666666666554321 36899999999999863

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.52  E-value=8.3e-14  Score=123.50  Aligned_cols=120  Identities=18%  Similarity=0.093  Sum_probs=78.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|+|||||+++++.........+..+.+.....+.....    .....+.+|||||..+..       .....
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~-------~~~~~   70 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS----DEDVRLMLWDTAGQEEFD-------AITKA   70 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC----CCEEEEEEeeCCchHHHH-------HhHHH
Confidence            7999999999999999999986532211121112211112221100    112468999999965431       12334


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +++.+|++++|+|++++++.+.+..+..++...   ..+.|+++|+||+|+...
T Consensus        71 ~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~  121 (162)
T cd04106          71 YYRGAQACILVFSTTDRESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLDQ  121 (162)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhcccc
Confidence            578899999999999876666665555555542   246899999999999754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.52  E-value=1.7e-14  Score=148.67  Aligned_cols=124  Identities=27%  Similarity=0.412  Sum_probs=97.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH---
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR---  349 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~---  349 (421)
                      ..+.|+|+||+|||||+|.++.+++.+.+|+|||..-..|++++.       | -+++++||||+.+..-++.....   
T Consensus       169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk-------Y-lrwQViDTPGILD~plEdrN~IEmqs  240 (620)
T KOG1490|consen  169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK-------Y-LRWQVIDTPGILDRPEEDRNIIEMQI  240 (620)
T ss_pred             CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh-------e-eeeeecCCccccCcchhhhhHHHHHH
Confidence            367899999999999999999999999999999998888887754       2 37899999999987665543322   


Q ss_pred             -HHHHhcccCCEEEEEeeCCC--CCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 -NFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 -~fL~~i~radvIl~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                       ..+.|++.  ++||+.|.|.  +.+.++...|.+.++-+   +.++|+|+|+||+|+...++
T Consensus       241 ITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIKpL---FaNK~~IlvlNK~D~m~~ed  298 (620)
T KOG1490|consen  241 ITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPL---FANKVTILVLNKIDAMRPED  298 (620)
T ss_pred             HHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhHHH---hcCCceEEEeecccccCccc
Confidence             35778875  5899999986  34455555566655543   36899999999999987654

>cd04116 Rab9 Rab9 subfamily

Probab=99.51  E-value=1.2e-13  Score=123.97  Aligned_cols=122  Identities=20%  Similarity=0.133  Sum_probs=79.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|+|||||++++.+........+..+.+.....+....      ....+.+|||||..+..       ....
T Consensus         6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~~-------~~~~   72 (170)
T cd04116           6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG------HFVTLQIWDTAGQERFR-------SLRT   72 (170)
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC------eEEEEEEEeCCChHHHH-------HhHH
Confidence            6899999999999999999987654322222111111111222111      12468899999965431       1223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC--CCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|+++.++.+.+..+..++..+...  ..+.|+++|+||+|+...
T Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  129 (170)
T cd04116          73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER  129 (170)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc
Confidence            4568899999999999877777666666665543321  245899999999999743

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.51  E-value=1.2e-13  Score=128.55  Aligned_cols=121  Identities=19%  Similarity=0.143  Sum_probs=80.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|..........|....+.....+..+.     .....+.+|||||....       ......
T Consensus         2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~-----~~~~~l~l~Dt~G~~~~-------~~~~~~   69 (201)
T cd04107           2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP-----NTVVRLQLWDIAGQERF-------GGMTRV   69 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-----CCEEEEEEEECCCchhh-------hhhHHH
Confidence            799999999999999999997653222122212222222222220     01246899999997432       122334


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~  406 (421)
                      +++.+|++++|+|++++.+.+....+..++....  ....+.|+++|+||+|+.+
T Consensus        70 ~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~  124 (201)
T cd04107          70 YYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK  124 (201)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence            5788999999999998877777766666665431  1224689999999999973

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01862 Rab7 Rab7 subfamily

Probab=99.51  E-value=1e-13  Score=123.86  Aligned_cols=120  Identities=21%  Similarity=0.162  Sum_probs=75.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|.+........+..+.+.....+....      ....+.++|+||.....       .....
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~~~-------~~~~~   68 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD------KLVTLQIWDTAGQERFQ-------SLGVA   68 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC------EEEEEEEEeCCChHHHH-------hHHHH
Confidence            799999999999999999998763321111111111111121111      12357899999975431       12335


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHh-cCC-CCCCCCEEEEEeCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNP-DYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~-~~~-~l~~kP~IIVlNK~Dl~~  406 (421)
                      .++.||++|+|+|++++...+....+.+++.. ... ...+.|+++|+||+|+..
T Consensus        69 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          69 FYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            57889999999999876655555555444332 211 123689999999999974

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04124 RabL2 RabL2 subfamily

Probab=99.51  E-value=9.5e-14  Score=124.43  Aligned_cols=115  Identities=23%  Similarity=0.180  Sum_probs=77.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee--ecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR--LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~--v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +|+++|.+|||||||++++...+.... +..| ..+....  +..+      .....+.+|||||....       ....
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~-------~~~~   66 (161)
T cd04124           2 KIILLGDSAVGKSKLVERFLMDGYEPQ-QLST-YALTLYKHNAKFE------GKTILVDFWDTAGQERF-------QTMH   66 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC-cCCc-eeeEEEEEEEEEC------CEEEEEEEEeCCCchhh-------hhhh
Confidence            789999999999999999987653221 1111 1111111  1111      11246889999997543       1122


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..+++.+|++++|+|++++.+.++...+..++....   .+.|+++|+||+|+..
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~  118 (161)
T cd04124          67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDP  118 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCch
Confidence            345788999999999998777667666777776543   3689999999999853

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.51  E-value=8.6e-14  Score=127.80  Aligned_cols=121  Identities=26%  Similarity=0.279  Sum_probs=83.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC--CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-----
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-----  343 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-----  343 (421)
                      ..++|+++|.+|||||||+|+|++.+  ..+++.+++|.......+           ..++.++||||+......     
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-----------~~~l~l~DtpG~~~~~~~~~~~~   91 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-----------NDKLRLVDLPGYGYAKVSKEEKE   91 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-----------CCeEEEeCCCCCCCcCCCchHHH
Confidence            55789999999999999999999865  345667777776544332           136999999997542110     


Q ss_pred             -cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          344 -GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       344 -~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                       ...+...++++.+.++++++|+|++.+....+. .+..++..     .+.|+++|+||+|+....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~-----~~~~~iiv~nK~Dl~~~~  151 (196)
T PRK00454         92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE-----YGIPVLIVLTKADKLKKG  151 (196)
T ss_pred             HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECcccCCHH
Confidence             112333455666677899999998865443332 23445543     468899999999997654

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.51  E-value=3e-14  Score=139.63  Aligned_cols=127  Identities=27%  Similarity=0.284  Sum_probs=97.6

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc----
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----  344 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~----  344 (421)
                      .....|++||.||||||||.|.+.+.+... +..+.||.....|++..+        ..++++.||||++...+..    
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~--------eTQlvf~DTPGlvs~~~~r~~~l  141 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG--------ETQLVFYDTPGLVSKKMHRRHHL  141 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC--------ceEEEEecCCcccccchhhhHHH
Confidence            345589999999999999999999998765 788899999999998765        3489999999999754321    


Q ss_pred             -CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          345 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       345 -~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                       ..+.......+++||+++.|+|+++....-. -.++..|+.|    ...|-++|+||+|......
T Consensus       142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y----s~ips~lvmnkid~~k~k~  202 (379)
T KOG1423|consen  142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY----SKIPSILVMNKIDKLKQKR  202 (379)
T ss_pred             HHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH----hcCCceeeccchhcchhhh
Confidence             1122334567889999999999996322211 2366778877    4689999999999887654

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.51  E-value=1.2e-13  Score=124.85  Aligned_cols=113  Identities=23%  Similarity=0.241  Sum_probs=76.4

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccC----------------CCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  337 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~----------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl  337 (421)
                      +|+++|.+|||||||+|+|++.......                ...+|.+.....+...        ...+.++||||+
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~   72 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--------DRRVNFIDTPGH   72 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--------CEEEEEEeCCCc
Confidence            4889999999999999999887643311                1223333333333221        247899999997


Q ss_pred             cccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       338 ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+.       ...+...+..+|++++|+|++.+......+ +...+..     .+.|+++|+||+|+...
T Consensus        73 ~~~-------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~i~iv~nK~D~~~~  129 (189)
T cd00881          73 EDF-------SSEVIRGLSVSDGAILVVDANEGVQPQTRE-HLRIARE-----GGLPIIVAINKIDRVGE  129 (189)
T ss_pred             HHH-------HHHHHHHHHhcCEEEEEEECCCCCcHHHHH-HHHHHHH-----CCCCeEEEEECCCCcch
Confidence            543       233455677899999999998765443333 3333433     46899999999999864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.51  E-value=5.2e-14  Score=125.94  Aligned_cols=121  Identities=20%  Similarity=0.234  Sum_probs=80.9

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||++++..... ...|+.|+.......+..+      .....+.+|||||.....      ......
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~D~~g~~~~~------~~~~~~   67 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTID------GEQVSLEILDTAGQQQAD------TEQLER   67 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEEC------CEEEEEEEEECCCCcccc------cchHHH
Confidence            588999999999999999986432 2344444422111111111      012368899999986421      011234


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+..+|++++|+|++++.+.+....+..++..+.....+.|+++|+||+|+...
T Consensus        68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  121 (165)
T cd04146          68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY  121 (165)
T ss_pred             HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence            567899999999999887777777777777665422246899999999998643

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.51  E-value=1.5e-13  Score=126.19  Aligned_cols=121  Identities=19%  Similarity=0.227  Sum_probs=76.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++...+. +..+|..........+....     .....+.+|||||....       ...+.
T Consensus         4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~~-------~~~~~   70 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGN-----SKGITFHFWDVGGQEKL-------RPLWK   70 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccC-----CCceEEEEEECCCcHhH-------HHHHH
Confidence            4799999999999999999987543 22232221111111121110     11247899999996432       22233


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.||+++||+|+++..+.+....+..++..+.. ..++|+++|+||+|+...
T Consensus        71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~  124 (183)
T cd04152          71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA  124 (183)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc
Confidence            446789999999999876555555444444444322 246899999999998753

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.50  E-value=1.5e-13  Score=123.98  Aligned_cols=116  Identities=22%  Similarity=0.249  Sum_probs=75.4

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      .|+++|.+|||||||++++.+.... ..+.. |.......+..        ...++.+|||||..+.       ...+..
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~-~~~~p-t~g~~~~~i~~--------~~~~l~i~Dt~G~~~~-------~~~~~~   63 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSL-ESVVP-TTGFNSVAIPT--------QDAIMELLEIGGSQNL-------RKYWKR   63 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCc-ccccc-cCCcceEEEee--------CCeEEEEEECCCCcch-------hHHHHH
Confidence            3789999999999999999976432 22221 11111112221        1347899999997442       223446


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +++.||+++||+|+++.......+.++.++..   ...+.|+++|+||+|+.....
T Consensus        64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~~~~  116 (164)
T cd04162          64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPAARS  116 (164)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcCCCC
Confidence            68899999999999876544444333333322   124799999999999976543

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.50  E-value=1.4e-13  Score=125.51  Aligned_cols=128  Identities=20%  Similarity=0.261  Sum_probs=79.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++...+. . ++. .|.......+...        ...+.+|||||....       ...+.
T Consensus        14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~-~~~-~t~~~~~~~~~~~--------~~~l~l~D~~G~~~~-------~~~~~   75 (175)
T smart00177       14 MRILMVGLDAAGKTTILYKLKLGES-V-TTI-PTIGFNVETVTYK--------NISFTVWDVGGQDKI-------RPLWR   75 (175)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCC-C-CcC-CccccceEEEEEC--------CEEEEEEECCCChhh-------HHHHH
Confidence            6899999999999999999965432 1 121 1222222222221        246899999997543       22234


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      .+++.||++|||+|++++...++...++..+.. .....+.|++||+||+|+.+.....+..+.+++
T Consensus        76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~  141 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLN-EDELRDAVILVFANKQDLPDAMKAAEITEKLGL  141 (175)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhh-CHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCc
Confidence            457899999999999976655544433333321 112245899999999999765433333344443

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.50  E-value=1.3e-13  Score=122.67  Aligned_cols=119  Identities=18%  Similarity=0.161  Sum_probs=78.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||++++.+.... ..+..|+.+...-.+..+.      ....+.+|||||..+..    .+   ...
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~~----~~---~~~   67 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFV-DDYDPTIEDSYRKQIEIDG------EVCLLDILDTAGQEEFS----AM---RDQ   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCC-cccCCchhhhEEEEEEECC------EEEEEEEEECCCcccch----HH---HHH
Confidence            7999999999999999999976532 2233333221111111110      12468899999975531    12   223


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ++..+|++++|+|++++.+.+....+...+..... ..+.|+++|+||+|+...
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~  120 (164)
T smart00173       68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESE  120 (164)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence            46789999999999987666666665555544321 136899999999999764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01890 LepA LepA subfamily

Probab=99.50  E-value=1.4e-13  Score=124.39  Aligned_cols=118  Identities=21%  Similarity=0.218  Sum_probs=75.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEecCCccc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI  338 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGli  338 (421)
                      .|+++|.+|+|||||+++|++....+..               ..++|..+....+.+...   ......+.+|||||+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~   78 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK---DGQEYLLNLIDTPGHV   78 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC---CCCcEEEEEEECCCCh
Confidence            6899999999999999999875432211               112233322222211000   0113468899999986


Q ss_pred             ccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       339 e~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +.       ......++..+|++++|+|+++....+++..+.... .     .++|+++|+||+|+...
T Consensus        79 ~~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~-----~~~~iiiv~NK~Dl~~~  134 (179)
T cd01890          79 DF-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E-----NNLEIIPVINKIDLPSA  134 (179)
T ss_pred             hh-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H-----cCCCEEEEEECCCCCcC
Confidence            53       223445678899999999998765555554443322 2     35899999999998653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04144 Ras2 Ras2 subfamily

Probab=99.50  E-value=8.1e-14  Score=128.63  Aligned_cols=120  Identities=15%  Similarity=0.101  Sum_probs=80.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|...... ..++.|+.+.....+..+.      ....+.+|||||..+..       .....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~-------~~~~~   66 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDG------QPCMLEVLDTAGQEEYT-------ALRDQ   66 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECC------EEEEEEEEECCCchhhH-------HHHHH
Confidence            4889999999999999999865432 2344443222111121111      12358899999975431       11234


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kP~IIVlNK~Dl~~~  407 (421)
                      ++..+|++++|+|+++..+++.+..+++.+...... ..+.|+++|+||+|+...
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~  121 (190)
T cd04144          67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE  121 (190)
T ss_pred             HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc
Confidence            577899999999999877777777777777654321 246899999999999653

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=99.50  E-value=1e-13  Score=123.77  Aligned_cols=120  Identities=20%  Similarity=0.211  Sum_probs=79.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++.... .+..++.|+.+.....+....      ....+.+|||||.....    .+.   .
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~~---~   67 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDG------QQCMLEILDTAGTEQFT----AMR---D   67 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECC------EEEEEEEEECCCcccch----hHH---H
Confidence            479999999999999999998653 233444444322222222211      12357899999975431    122   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|+++..+.+....+..++..+. ...+.|+++|+||+|+...
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~  121 (164)
T cd04175          68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDE  121 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhc
Confidence            34677999999999987766666666666665432 2246899999999999754

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.50  E-value=1.6e-13  Score=123.90  Aligned_cols=123  Identities=20%  Similarity=0.099  Sum_probs=81.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|+|||||+++++.........+....+.....+....      ....+.+|||||..+...   .+   ..
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~---~~---~~   70 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG------ERIKVQLWDTAGQERFRK---SM---VQ   70 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC------eEEEEEEEeCCChHHHHH---hh---HH
Confidence            5899999999999999999987553211111111111111222111      124789999999754210   11   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|++++.+.+....+.+++..+.. ..+.|+++|+||+|+....
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~  125 (170)
T cd04115          71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQI  125 (170)
T ss_pred             HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhc
Confidence            345789999999999988877777777777766532 2468999999999987544

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.49  E-value=1.8e-13  Score=125.91  Aligned_cols=126  Identities=21%  Similarity=0.278  Sum_probs=81.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++++..+..  .+ .+|...+...+...        ...+.+|||||..+.       ...+.
T Consensus        18 ~ki~ivG~~~~GKTsl~~~l~~~~~~--~~-~pt~g~~~~~~~~~--------~~~~~i~D~~Gq~~~-------~~~~~   79 (181)
T PLN00223         18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYK--------NISFTVWDVGGQDKI-------RPLWR   79 (181)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCc--cc-cCCcceeEEEEEEC--------CEEEEEEECCCCHHH-------HHHHH
Confidence            58999999999999999999864421  12 12222222222221        246899999996432       22344


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      .+++.||++|||+|+++.+..++.   ..++..+.  ....+.|++||+||+|+....+..+....+++
T Consensus        80 ~~~~~a~~iI~V~D~s~~~s~~~~---~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l  145 (181)
T PLN00223         80 HYFQNTQGLIFVVDSNDRDRVVEA---RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL  145 (181)
T ss_pred             HHhccCCEEEEEEeCCcHHHHHHH---HHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCc
Confidence            557889999999999976654433   33333321  12346899999999999876554444444554

>cd04154 Arl2 Arl2 subfamily

Probab=99.49  E-value=2.2e-13  Score=123.31  Aligned_cols=117  Identities=22%  Similarity=0.284  Sum_probs=75.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++....  .+. .|.......+...        ...+.+|||||....       ...+.
T Consensus        15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~--------~~~l~l~D~~G~~~~-------~~~~~   76 (173)
T cd04154          15 MRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYE--------GYKLNIWDVGGQKTL-------RPYWR   76 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEEC--------CEEEEEEECCCCHHH-------HHHHH
Confidence            57999999999999999999976432  111 1111111122221        246899999997542       22234


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.+|++++|+|++++.+.+....+...+... ....+.|+++|+||+|+....
T Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~  131 (173)
T cd04154          77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGAL  131 (173)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCC
Confidence            5678999999999998865555443333333221 122468999999999997643

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04140 ARHI_like ARHI subfamily

Probab=99.49  E-value=1.8e-13  Score=122.76  Aligned_cols=121  Identities=15%  Similarity=0.136  Sum_probs=79.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++++.+... .+..|+-......+...      .-...+.++||||..+..    .+   ..
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~---~~   67 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCS------KNICTLQITDTTGSHQFP----AM---QR   67 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCcchheEEEEEEEC------CEEEEEEEEECCCCCcch----HH---HH
Confidence            479999999999999999999765322 11111111111111111      012468999999976532    11   12


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..+|++++|+|+++..+.+....+++.+..+.. ...+.|+++|+||+|+...
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~  123 (165)
T cd04140          68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK  123 (165)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc
Confidence            345789999999999988777777777776665432 2246899999999999763

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.49  E-value=1.6e-13  Score=127.74  Aligned_cols=124  Identities=18%  Similarity=0.094  Sum_probs=83.5

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccC--CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH--
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR--  349 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~--~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~--  349 (421)
                      +|+|||.||||||||+|+|++.+.....  .+.+|.....+.....        +.++.++||||+.+.......+..  
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--------~~~i~viDTPG~~d~~~~~~~~~~~i   73 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--------GRRVNVIDTPGLFDTSVSPEQLSKEI   73 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--------CeEEEEEECcCCCCccCChHHHHHHH
Confidence            6899999999999999999998765433  3456666655544332        357999999999876432222222  


Q ss_pred             --HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHh-cCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 --NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 --~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~-~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                        .+.......|++|||+|+.. ...++.. +.+.+.. +.. ..-+++++|+|++|.....
T Consensus        74 ~~~~~~~~~g~~~illVi~~~~-~t~~d~~-~l~~l~~~fg~-~~~~~~ivv~T~~d~l~~~  132 (196)
T cd01852          74 VRCLSLSAPGPHAFLLVVPLGR-FTEEEEQ-AVETLQELFGE-KVLDHTIVLFTRGDDLEGG  132 (196)
T ss_pred             HHHHHhcCCCCEEEEEEEECCC-cCHHHHH-HHHHHHHHhCh-HhHhcEEEEEECccccCCC
Confidence              22233467899999999876 4444444 4444443 332 2236889999999987654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04125 RabA_like RabA-like subfamily

Probab=99.48  E-value=2.6e-13  Score=124.61  Aligned_cols=121  Identities=17%  Similarity=0.067  Sum_probs=81.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++++........+..+.+.....+..+.      ....+.+|||||..+.       .....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~g~~~~-------~~~~~   67 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIEN------KIIKLQIWDTNGQERF-------RSLNN   67 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEECCCcHHH-------HhhHH
Confidence            3799999999999999999997654321112111121111222111      1246789999996543       11234


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|++++.+.+.+..|..++..+..  ...|+++|+||+|+.+..
T Consensus        68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~  121 (188)
T cd04125          68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNK  121 (188)
T ss_pred             HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccc
Confidence            567889999999999987777777777777766543  347899999999997543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.48  E-value=3.4e-14  Score=140.16  Aligned_cols=131  Identities=32%  Similarity=0.310  Sum_probs=103.5

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      +-...+-|++|||+|||||||+++|+.+.....+..|.|+||.........       +..+.+.||-|++..  ...+|
T Consensus       174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-------g~~vlltDTvGFisd--LP~~L  244 (410)
T KOG0410|consen  174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-------GNFVLLTDTVGFISD--LPIQL  244 (410)
T ss_pred             ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-------CcEEEEeechhhhhh--CcHHH
Confidence            445667899999999999999999997766668899999999765544331       346899999999986  45667


Q ss_pred             hHHH---HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC--CCCCCEEEEEeCCCCCCC
Q 014655          348 GRNF---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       348 ~~~f---L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+|   |+++..+|+|++|+|+++|+..++.+.++..|...+-.  .....++-|-||+|..+.
T Consensus       245 vaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~  309 (410)
T KOG0410|consen  245 VAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED  309 (410)
T ss_pred             HHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence            7666   67778899999999999999888888888888876521  112337789999998654

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.48  E-value=2.7e-13  Score=120.38  Aligned_cols=117  Identities=18%  Similarity=0.118  Sum_probs=77.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|+++|.+|||||||+++|.+.+...  .+..+.+.......+..        ....+.+||+||..+..       ..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------~~~~~~i~D~~G~~~~~-------~~   66 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------TTVKFEIWDTAGQERYR-------SL   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------EEEEEEEEeCCchHHHH-------HH
Confidence            479999999999999999999876432  22222111111111211        13468999999964321       11


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ....++.+|++++|+|++++.+.+....+...+.....  ...|+++|+||+|+..
T Consensus        67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~  120 (163)
T cd01860          67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES  120 (163)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence            12346789999999999987666666666666655331  4688999999999874

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04118 Rab24 Rab24 subfamily

Probab=99.48  E-value=1.8e-13  Score=125.93  Aligned_cols=119  Identities=16%  Similarity=0.105  Sum_probs=79.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc-ceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+++|.+|+|||||+++|+..+....+|..|+-... ...+....      ....+.+|||||..+..    .+.   
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~~----~~~---   67 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGE------RVVTLGIWDTAGSERYE----AMS---   67 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECC------EEEEEEEEECCCchhhh----hhh---
Confidence            37999999999999999999987654434443332211 11122111      12357899999975431    111   


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...+..+|++++|+|+++..+++....+..++....   .+.|+++|+||+|+...
T Consensus        68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~  120 (193)
T cd04118          68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQ  120 (193)
T ss_pred             HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEccccccc
Confidence            234578999999999988766666666666665532   36899999999998653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04155 Arl3 Arl3 subfamily

Probab=99.48  E-value=2.6e-13  Score=121.97  Aligned_cols=129  Identities=21%  Similarity=0.222  Sum_probs=80.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      -.+|+++|.+|||||||+++|++.....  + ..|...+...+...        +..+.++|+||..+.       ...+
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~--~-~~t~g~~~~~i~~~--------~~~~~~~D~~G~~~~-------~~~~   75 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISH--I-TPTQGFNIKTVQSD--------GFKLNVWDIGGQRAI-------RPYW   75 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcc--c-CCCCCcceEEEEEC--------CEEEEEEECCCCHHH-------HHHH
Confidence            3689999999999999999999865321  1 11111111123222        246899999996432       2334


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      ...++.+|++++|+|+++..........+..+.... .....|+++|+||+|+....+..+..+.+++
T Consensus        76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~  142 (173)
T cd04155          76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAPAEEIAEALNL  142 (173)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCCHHHHHHHcCC
Confidence            556789999999999987544333332222222211 1246899999999999765544444444544

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.48  E-value=2.7e-13  Score=119.84  Aligned_cols=118  Identities=19%  Similarity=0.160  Sum_probs=77.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++++.... ..++..++.+.....+..+      .....+.++||||..+..    .+.   -.
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~i~D~~g~~~~~----~~~---~~   67 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLD------GEDVQLNILDTAGQEDYA----AIR---DN   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEEC------CEEEEEEEEECCChhhhh----HHH---HH
Confidence            799999999999999999997653 2344444432222222211      012468999999976531    122   23


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .++.+|.+++|+|++++.+......++..+..... ..+.|+++|+||+|+..
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~  119 (164)
T cd04139          68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED  119 (164)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence            45778999999999876655555555554444321 24799999999999976

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01893 Miro1 Miro1 subfamily

Probab=99.48  E-value=2.7e-13  Score=121.97  Aligned_cols=118  Identities=19%  Similarity=0.222  Sum_probs=78.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|...+.. ..++.+ ...........      ....++.+|||||..+.       ...+..
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~-~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~-------~~~~~~   66 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRV-LPEITIPADVT------PERVPTTIVDTSSRPQD-------RANLAA   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCc-ccceEeeeeec------CCeEEEEEEeCCCchhh-------hHHHhh
Confidence            7999999999999999999876532 223322 11111111111      01247899999997542       123345


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+..+|++++|+|++++.+.++.. .|..+++.+.   .+.|+++|+||+|+.+..+
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~  120 (166)
T cd01893          67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSS  120 (166)
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccc
Confidence            578899999999999877666543 3555565543   3689999999999976544

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04110 Rab35 Rab35 subfamily

Probab=99.47  E-value=3.1e-13  Score=125.88  Aligned_cols=119  Identities=18%  Similarity=0.116  Sum_probs=79.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ..+|+++|.+|||||||++++.+..... .+ .+|.  +.....+....      ....+.+|||||....       ..
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~------~~~~l~l~D~~G~~~~-------~~   70 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIGVDFKIRTVEING------ERVKLQIWDTAGQERF-------RT   70 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-CccccceeEEEEEEECC------EEEEEEEEeCCCchhH-------HH
Confidence            4689999999999999999998765321 12 1222  11111221111      1236889999996432       22


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ....++..++++++|+|++++.+.+.+..+.+++....   ...|++||+||+|+....
T Consensus        71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~  126 (199)
T cd04110          71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERK  126 (199)
T ss_pred             HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc
Confidence            23455778999999999998776666666666665543   358999999999997643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.47  E-value=2.9e-13  Score=124.63  Aligned_cols=129  Identities=21%  Similarity=0.257  Sum_probs=80.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||++++...+..  .+. +|.......+...        ...+.++||||....       ...+
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~-~T~~~~~~~~~~~--------~~~~~l~D~~G~~~~-------~~~~   78 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVV--TTI-PTIGFNVETVEYK--------NLKFTMWDVGGQDKL-------RPLW   78 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC-CccccceEEEEEC--------CEEEEEEECCCCHhH-------HHHH
Confidence            368999999999999999999754321  121 2322222233322        247899999997432       2223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      ..+++.+|++|||+|+++.....+....+..+.. .......|++||+||+|+.+.....+....+++
T Consensus        79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~  145 (182)
T PTZ00133         79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLS-EDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL  145 (182)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh-CHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC
Confidence            4457899999999999876544444332222211 112346899999999999765433333344443

>PLN03118 Rab family protein; Provisional

Probab=99.47  E-value=4e-13  Score=126.15  Aligned_cols=121  Identities=19%  Similarity=0.179  Sum_probs=78.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ..+|+|+|.+|||||||+++|+.....  .+..|+ .+.....+..+.      ....+.++||||..+..    .+   
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~~----~~---   78 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGG------KRLKLTIWDTAGQERFR----TL---   78 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECC------EEEEEEEEECCCchhhH----HH---
Confidence            368999999999999999999876542  221111 111111122111      12468999999975531    12   


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+++.+|++|+|+|+++..+++.... +..++..+.. ....|+++|+||+|+....
T Consensus        79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~  136 (211)
T PLN03118         79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLVGNKVDRESER  136 (211)
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccC
Confidence            2345678999999999998776666654 3344554432 2357899999999997543

>cd01889 SelB_euk SelB subfamily

Probab=99.47  E-value=2.3e-13  Score=125.87  Aligned_cols=123  Identities=25%  Similarity=0.267  Sum_probs=78.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC-------CCccCCCCeeeeccceeecCCCCCC------ccccccceEEecCCcccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLG------AEKYSSEATLADLPGLIE  339 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~-------~~ia~~pfTTl~p~~g~v~~~~~~~------~~~~~~~i~iiDtPGlie  339 (421)
                      .+|+++|.+|+|||||+++|+...       ......+.+|.+.....+.......      .......+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            369999999999999999998731       1112344566665544333220000      001134799999999742


Q ss_pred             cccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       340 ~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                             +...+...+..+|++++|+|++......+.+.+. ....     ...|+++|+||+|+....
T Consensus        81 -------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~~~  136 (192)
T cd01889          81 -------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI-----LCKKLIVVLNKIDLIPEE  136 (192)
T ss_pred             -------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCCEEEEEECcccCCHH
Confidence                   3445556667899999999998754333333222 2222     257999999999997543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PLN03110 Rab GTPase; Provisional

Probab=99.46  E-value=4.2e-13  Score=126.99  Aligned_cols=122  Identities=17%  Similarity=0.097  Sum_probs=84.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++.+......+....+.....+..+.      ....+.||||||....       ...+
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~------~~~~l~l~Dt~G~~~~-------~~~~   78 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG------KTVKAQIWDTAGQERY-------RAIT   78 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC------EEEEEEEEECCCcHHH-------HHHH
Confidence            46999999999999999999998764433233222222222332221      1247899999996542       2223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.++++|+|+|+++..+++.+..|+..+..+..  .+.|+++|+||+|+....
T Consensus        79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~  133 (216)
T PLN03110         79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLR  133 (216)
T ss_pred             HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhccccc
Confidence            4557889999999999988777777777776665432  468999999999986543

>cd04127 Rab27A Rab27a subfamily

Probab=99.46  E-value=4.5e-13  Score=121.36  Aligned_cols=128  Identities=15%  Similarity=0.042  Sum_probs=79.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC----CccccccceEEecCCcccccccccCch
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----GAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      ..+|+++|.+|||||||++++.+........+..+.+.....+......    ........+.+|||||..+.       
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------   76 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF-------   76 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------
Confidence            3689999999999999999998765322111111111111112111000    00011246899999996543       


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .......++.+|++++|+|++++.+..+...+..++..+.. ..+.|+++|+||+|+.+.
T Consensus        77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~  135 (180)
T cd04127          77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ  135 (180)
T ss_pred             HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc
Confidence            11223456889999999999987766666666666655321 135789999999999754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04120 Rab12 Rab12 subfamily

Probab=99.46  E-value=5.1e-13  Score=125.76  Aligned_cols=119  Identities=14%  Similarity=0.114  Sum_probs=82.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .|.++|..+||||||++++...... ..|+.|. .+-....+..+.      ....+.+|||+|....       ...+-
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~------~~v~l~iwDtaGqe~~-------~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRG------KKIRLQIWDTAGQERF-------NSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECC------EEEEEEEEeCCCchhh-------HHHHH
Confidence            5889999999999999999875532 2333221 222212222221      1247899999997543       11223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.||++++|+|++++.+++....|.+++..+..  .+.|+++|+||+|+....
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~~~  121 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDR  121 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccccc
Confidence            457899999999999998888888777777776532  468999999999997543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04176 Rap2 Rap2 subgroup

Probab=99.46  E-value=4.3e-13  Score=119.40  Aligned_cols=120  Identities=19%  Similarity=0.178  Sum_probs=79.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++....... .+..|+.+.....+..+.      ....+.+|||||.....    .+   ..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~---~~   67 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDS------SPSVLEILDTAGTEQFA----SM---RD   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECC------EEEEEEEEECCCccccc----ch---HH
Confidence            479999999999999999998765322 222222111111222111      12357899999975432    12   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.+|++++|+|+++..+..+...+..++..... ..+.|+++|+||+|+...
T Consensus        68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~  121 (163)
T cd04176          68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE  121 (163)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc
Confidence            346789999999999987777777666666665431 246899999999998653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.45  E-value=5.3e-13  Score=120.62  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=78.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||++++....... .+. .|.......+....    ......+.+|||||..+..    .+..   .
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~-~~~-~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~~----~~~~---~   68 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFEK-KYV-ATLGVEVHPLDFHT----NRGKIRFNVWDTAGQEKFG----GLRD---G   68 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCC-CCC-CceeeEEEEEEEEE----CCEEEEEEEEECCCChhhc----cccH---H
Confidence            79999999999999999998654221 121 22211111111100    0112468999999975431    1222   3


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ++..+|++|+|+|+++..+.+.+..+..++..+..   +.|+++|+||+|+...
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~  119 (166)
T cd00877          69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR  119 (166)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc
Confidence            45689999999999987777777777777766542   7999999999999743

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.45  E-value=5.1e-13  Score=121.41  Aligned_cols=120  Identities=19%  Similarity=0.100  Sum_probs=78.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|++||.++||||||++++...... ..|.-|. .+.....+....      ....+.+|||||..+..       ...
T Consensus         1 ~ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~-------~~~   66 (170)
T cd04108           1 SKVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILG------VPFSLQLWDTAGQERFK-------CIA   66 (170)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECC------EEEEEEEEeCCChHHHH-------hhH
Confidence            37899999999999999999986532 2332222 122112222211      12468999999975431       122


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+++.+|++++|+|+++..+.+....|..++..... ....|+++|.||+|+.+.
T Consensus        67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~  121 (170)
T cd04108          67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSP  121 (170)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCcc
Confidence            3457899999999999876666666666665543221 124678999999999654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.45  E-value=4.2e-13  Score=122.65  Aligned_cols=118  Identities=19%  Similarity=0.147  Sum_probs=80.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|++||.++||||||++++..... ..+|..|+.+.....+...      .....+.+|||+|..+..    .+.   .
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~~---~   67 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIG------GEPYTLGLFDTAGQEDYD----RLR---P   67 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEEC------CEEEEEEEEECCCccchh----hhh---h
Confidence            4799999999999999999987553 2334333322221122211      112468899999985431    111   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..+|++++|+|++++.+.+... .|..++....   .+.|+++|+||+|+...
T Consensus        68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~  120 (175)
T cd01874          68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDD  120 (175)
T ss_pred             hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhC
Confidence            3567899999999999887777665 3666666543   36899999999998654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.45  E-value=5.8e-13  Score=121.70  Aligned_cols=118  Identities=19%  Similarity=0.174  Sum_probs=78.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|+|||||+++|.+.... ..+..|+.......+....     .....+.+|||||..+..       .....
T Consensus         2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~-----~~~~~l~i~Dt~G~~~~~-------~~~~~   68 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPN-----GKIIELALWDTAGQEEYD-------RLRPL   68 (187)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecC-----CcEEEEEEEECCCchhHH-------HHHHH
Confidence            7999999999999999999976532 2333333222222222210     012468999999965431       11123


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++.||++++|+|+++..++++... +..++..+.   .+.|+++|+||+|+...
T Consensus        69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  120 (187)
T cd04132          69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKD  120 (187)
T ss_pred             hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhC
Confidence            4678999999999998776666543 444554433   36899999999999653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.45  E-value=5.9e-13  Score=123.29  Aligned_cols=115  Identities=22%  Similarity=0.292  Sum_probs=74.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc-cCC---------------CCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  335 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP  335 (421)
                      +.+|+++|.+|+|||||+++|+.....+ ..+               ..+|.......+...        ...+.++|||
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------~~~~~l~Dtp   73 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK--------DTKINIVDTP   73 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC--------CEEEEEEECC
Confidence            4589999999999999999998632111 111               222333322223221        2478999999


Q ss_pred             cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      |+.+.       ......+++.+|++++|+|+++.. ......++.++..     .+.|+++|+||+|+...
T Consensus        74 G~~~~-------~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~  132 (194)
T cd01891          74 GHADF-------GGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPDA  132 (194)
T ss_pred             CcHHH-------HHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence            98653       223345678899999999998643 2233333333332     36899999999999753

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.44  E-value=4.1e-13  Score=121.79  Aligned_cols=120  Identities=14%  Similarity=0.056  Sum_probs=79.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.||||||||+++++..... ..+..|+.......+....      ....+.++||||..+..       ....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~~-------~~~~   67 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRYKG------QDYHLEIVDTAGQDEYS-------ILPQ   67 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEECC------EEEEEEEEECCChHhhH-------HHHH
Confidence            47999999999999999999976532 2233333222222222211      12367899999975431       1122


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..++++++|+|+++..+.+....++..+.... ...+.|+++|+||+|+...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~  121 (180)
T cd04137          68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQ  121 (180)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhc
Confidence            44667999999999998766666666655554432 2246899999999998753

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.44  E-value=3.4e-13  Score=126.88  Aligned_cols=114  Identities=22%  Similarity=0.214  Sum_probs=75.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCCCc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLGA  322 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~~~  322 (421)
                      +|+++|.+|+|||||+++|+...-.+.                               ....+|++.....+...     
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-----   75 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP-----   75 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence            589999999999999999976443321                               01455666655554432     


Q ss_pred             cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655          323 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  402 (421)
Q Consensus       323 ~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~  402 (421)
                         +.++.++||||+.+.       .......+..+|++++|+|++.+....+ ..+...+..+.    ..++|+|+||+
T Consensus        76 ---~~~~~liDTpG~~~~-------~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~----~~~iIvviNK~  140 (208)
T cd04166          76 ---KRKFIIADTPGHEQY-------TRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG----IRHVVVAVNKM  140 (208)
T ss_pred             ---CceEEEEECCcHHHH-------HHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC----CCcEEEEEEch
Confidence               347999999997542       2234456789999999999987543222 22333444321    24578899999


Q ss_pred             CCCCC
Q 014655          403 DLPEM  407 (421)
Q Consensus       403 Dl~~~  407 (421)
                      |+...
T Consensus       141 D~~~~  145 (208)
T cd04166         141 DLVDY  145 (208)
T ss_pred             hcccC
Confidence            99753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.44  E-value=8.6e-13  Score=113.69  Aligned_cols=120  Identities=27%  Similarity=0.214  Sum_probs=76.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      ++|+++|.+|+|||||+++|.........++++|.+.....+....      ....+.++|+||..+..    .+...  
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~G~~~~~----~~~~~--   69 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDG------KTYKFNLLDTAGQEDYR----AIRRL--   69 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECC------EEEEEEEEECCCcccch----HHHHH--
Confidence            5899999999999999999999884446667777766554443321      11468999999965432    12222  


Q ss_pred             HhcccCCEEEEEeeCCCC-CChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~-~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                       ....++.+++++|.... ....... .+...+..+..  .+.|+++|+||+|+...
T Consensus        70 -~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~  123 (161)
T TIGR00231        70 -YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDA  123 (161)
T ss_pred             -HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcc
Confidence             23455666777776543 2222221 23333333322  16899999999999764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PTZ00369 Ras-like protein; Provisional

Probab=99.44  E-value=5.1e-13  Score=123.18  Aligned_cols=120  Identities=18%  Similarity=0.126  Sum_probs=80.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++...... ..+..|+.......+..+.      ....+.+|||||..+..    .+   ..
T Consensus         6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~l---~~   71 (189)
T PTZ00369          6 YKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQCVIDE------ETCLLDILDTAGQEEYS----AM---RD   71 (189)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEEEECC------EEEEEEEEeCCCCccch----hh---HH
Confidence            58999999999999999999876532 2222222111111111111      12357899999976532    12   23


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..+|++++|+|+++.++.+....+..++..+.. ..+.|+++|+||+|+...
T Consensus        72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~  125 (189)
T PTZ00369         72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE  125 (189)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence            456789999999999988777777777777765432 236899999999998654

>cd04117 Rab15 Rab15 subfamily

Probab=99.44  E-value=1.1e-12  Score=117.78  Aligned_cols=118  Identities=19%  Similarity=0.183  Sum_probs=80.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc--ceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~--~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +|+++|.+++|||||++++...+.....  ..|....  ...+....      ....+.+|||||.....       ...
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~~-------~~~   66 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH--ISTIGVDFKMKTIEVDG------IKVRIQIWDTAGQERYQ-------TIT   66 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECC------EEEEEEEEeCCCcHhHH-------hhH
Confidence            6899999999999999999876543221  2232221  11222211      12468899999964431       112


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++..+|++++|+|++++.+.+....+.+++..+..  .+.|+++|.||+|+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~  121 (161)
T cd04117          67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKR  121 (161)
T ss_pred             HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc
Confidence            3456789999999999988777777777776665432  368999999999997544

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.43  E-value=5.9e-13  Score=119.77  Aligned_cols=116  Identities=22%  Similarity=0.218  Sum_probs=76.3

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHh
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH  354 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~  354 (421)
                      |+++|.+|+|||||++++...... ..+..|........+..+      .....+.+|||||..+...    +.   ...
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~~~----~~---~~~   66 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFP-EDYVPTVFENYSADVEVD------GKPVELGLWDTAGQEDYDR----LR---PLS   66 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCC-CCCCCcEEeeeeEEEEEC------CEEEEEEEEECCCCcccch----hc---hhh
Confidence            578999999999999999886532 222222222211122211      1123689999999765321    11   124


Q ss_pred             cccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ++.+|++|+|+|+++..+.+... .|...+..+.   .+.|+++|+||+|+...
T Consensus        67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~  117 (174)
T smart00174       67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRED  117 (174)
T ss_pred             cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhC
Confidence            67899999999999876666553 3555565543   46899999999999763

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01892 Miro2 Miro2 subfamily

Probab=99.43  E-value=5.5e-13  Score=120.94  Aligned_cols=121  Identities=21%  Similarity=0.111  Sum_probs=77.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc-ceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      |...+|+++|.+|||||||++++.+....+..|..|+.... ...+..+.      ....+.++|++|..+..    .+ 
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~------~~~~l~~~d~~g~~~~~----~~-   70 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYG------QEKYLILREVGEDEVAI----LL-   70 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECC------eEEEEEEEecCCccccc----cc-
Confidence            34578999999999999999999987644244544442211 11222211      12367899999975431    11 


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        ...+++.||++++|+|++++.+.+..   .+++..+.. ..+.|+++|+||+|+.+.
T Consensus        71 --~~~~~~~~d~~llv~d~~~~~s~~~~---~~~~~~~~~-~~~~p~iiv~NK~Dl~~~  123 (169)
T cd01892          71 --NDAELAACDVACLVYDSSDPKSFSYC---AEVYKKYFM-LGEIPCLFVAAKADLDEQ  123 (169)
T ss_pred             --chhhhhcCCEEEEEEeCCCHHHHHHH---HHHHHHhcc-CCCCeEEEEEEccccccc
Confidence              22346899999999999876444433   333333221 136899999999999654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.43  E-value=5.7e-13  Score=123.87  Aligned_cols=119  Identities=16%  Similarity=0.134  Sum_probs=80.4

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||++++...+.. ..+..|+.......+....      ....+.++||||..+..    .+   ...
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~~----~~---~~~   66 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGG------VSLTLDILDTSGSYSFP----AM---RKL   66 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECC------EEEEEEEEECCCchhhh----HH---HHH
Confidence            5899999999999999999886532 2333333222222222211      12368899999976531    11   123


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+..||++++|+|++++.+.+....+...+..+.. ..+.|+++|+||+|+...
T Consensus        67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~  119 (198)
T cd04147          67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEE  119 (198)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEccccccc
Confidence            46789999999999987777777666666655432 146899999999999753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.43  E-value=1.4e-13  Score=116.67  Aligned_cols=115  Identities=18%  Similarity=0.204  Sum_probs=74.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCC---c-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPD---I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~---i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +|.++|.++||||||+++|.+....   . .+....+.......+...        ...+.++|++|..+....    . 
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~g~~~~~~~----~-   67 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD--------RQSLQFWDFGGQEEFYSQ----H-   67 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE--------EEEEEEEEESSSHCHHCT----S-
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC--------ceEEEEEecCccceeccc----c-
Confidence            6899999999999999999987654   1 222222322222233222        124889999998654221    1 


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      .  ..+..+|++++|+|++++.+.+.+..+..+|..+.....+.|+++|+||.|
T Consensus        68 ~--~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   68 Q--FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             H--HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             c--chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            1  127889999999999987766666556556655432224599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00157 Rho Rho (Ras homology) family

Probab=99.42  E-value=5.2e-13  Score=119.22  Aligned_cols=120  Identities=23%  Similarity=0.202  Sum_probs=75.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.+.... +..|..+.....+...      .....+.++||||+.+...    +.   .
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~l~~~D~~g~~~~~~----~~---~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTE-YVPTVFDNYSATVTVD------GKQVNLGLWDTAGQEEYDR----LR---P   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeEEEEEEC------CEEEEEEEEeCCCcccccc----cc---h
Confidence            3789999999999999999998764221 1111111111111111      0123689999999876421    11   1


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..++.+|++++|+|++++.+.... ..+...+..+.   .+.|+++|+||+|+.....
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~  121 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDEN  121 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchh
Confidence            234789999999999875544433 22444444433   3799999999999976653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04111 Rab39 Rab39 subfamily

Probab=99.42  E-value=1.1e-12  Score=123.68  Aligned_cols=122  Identities=20%  Similarity=0.107  Sum_probs=79.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.+......+..+.+.....+...+     .....+.++||||....       .....
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~-----~~~~~l~i~Dt~G~~~~-------~~~~~   70 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP-----GVRIKLQLWDTAGQERF-------RSITR   70 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC-----CCEEEEEEEeCCcchhH-------HHHHH
Confidence            5899999999999999999998664332222221222111222111     11246899999997543       11223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..+|++|+|+|++++.+.+.+..+..++..+.. ....|+++|.||+|+...
T Consensus        71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~  124 (211)
T cd04111          71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQ  124 (211)
T ss_pred             HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccc
Confidence            456889999999999987777776666666554321 134678999999999764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04135 Tc10 TC10 subfamily

Probab=99.42  E-value=8.9e-13  Score=118.59  Aligned_cols=117  Identities=18%  Similarity=0.162  Sum_probs=77.5

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|+|||||++++...+.. ..+..|+.+.....+..+.      ....+.+|||||..+...    +..   .
T Consensus         2 ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~~~---~   67 (174)
T cd04135           2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGG------KQYLLGLYDTAGQEDYDR----LRP---L   67 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECC------EEEEEEEEeCCCcccccc----ccc---c
Confidence            7899999999999999999876532 2333333222111222211      123578999999755321    111   2


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+..+|++++|+|++++.++++.. .+..++...   ..+.|+++|+||+|+.+.
T Consensus        68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~  119 (174)
T cd04135          68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDD  119 (174)
T ss_pred             cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcC
Confidence            357899999999999877666653 455566554   257899999999998654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03108 Rab family protein; Provisional

Probab=99.41  E-value=1.1e-12  Score=123.42  Aligned_cols=121  Identities=17%  Similarity=0.063  Sum_probs=80.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|+..+......+....+.....+....      ....+.+|||||....       ....
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~------~~i~l~l~Dt~G~~~~-------~~~~   72 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN------KPIKLQIWDTAGQESF-------RSIT   72 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECC------EEEEEEEEeCCCcHHH-------HHHH
Confidence            36899999999999999999997654332222111111122222211      1236889999997543       1123


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++..+|++|+|+|+++..+.+....+..++..+..  ...|+++|+||+|+...
T Consensus        73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~  126 (210)
T PLN03108         73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHR  126 (210)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccc
Confidence            3556789999999999987766666556655554332  36899999999999754

>cd04177 RSR1 RSR1 subgroup

Probab=99.41  E-value=1.2e-12  Score=117.85  Aligned_cols=121  Identities=18%  Similarity=0.210  Sum_probs=79.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.||||||||++++.+... ...+..|+.......+...      .....+.+|||||..+..    .+.+   
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~~----~~~~---   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEID------GRQCDLEILDTAGTEQFT----AMRE---   67 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEEC------CEEEEEEEEeCCCcccch----hhhH---
Confidence            3799999999999999999986652 2233333322111112111      112468899999976542    2222   


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.++.+++|+|++++.+.+....+..++.... ...+.|+++|+||+|+....
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~  122 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDR  122 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccC
Confidence            23567899999999998777766666666665432 22468999999999997544

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.41  E-value=1e-12  Score=127.38  Aligned_cols=119  Identities=11%  Similarity=0.107  Sum_probs=80.5

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||++++...+.. ..|..|+.+.....+....      ....+.||||+|..+..    .+   ...
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i~~------~~~~l~I~Dt~G~~~~~----~~---~~~   67 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSIRG------EVYQLDILDTSGNHPFP----AM---RRL   67 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEECC------EEEEEEEEECCCChhhh----HH---HHH
Confidence            6899999999999999999875532 2343343222222222211      12468899999975431    11   112


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC-------CCCCCCCEEEEEeCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN-------PDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~-------~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ++..+|++|+|+|+++.++++.+..+.+++..+.       ....+.|+|+|+||+|+..
T Consensus        68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            3568999999999998877777777777775532       1224689999999999975

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.41  E-value=1.1e-12  Score=115.30  Aligned_cols=118  Identities=26%  Similarity=0.300  Sum_probs=78.1

Q ss_pred             eecccCCCCCChhHHHHHHhc--CCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc------ccC
Q 014655          274 DVGLVGLPNAGKSTLLAAITH--AKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH------LGK  345 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~--~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~------~~~  345 (421)
                      +|+++|.+|||||||+|+|++  ..+..++.+++|.......+           ...++++||||+.....      .-.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~~~D~~g~~~~~~~~~~~~~~~   69 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-----------NDKFRLVDLPGYGYAKVSKEVKEKWG   69 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-----------cCeEEEecCCCccccccCHHHHHHHH
Confidence            589999999999999999994  33445666666655433222           12689999999765311      011


Q ss_pred             chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+...|+...+.++++++|+|......... ..+.+++..     ...|+++|+||+|+....
T Consensus        70 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~-----~~~~vi~v~nK~D~~~~~  126 (170)
T cd01876          70 KLIEEYLENRENLKGVVLLIDSRHGPTEID-LEMLDWLEE-----LGIPFLVVLTKADKLKKS  126 (170)
T ss_pred             HHHHHHHHhChhhhEEEEEEEcCcCCCHhH-HHHHHHHHH-----cCCCEEEEEEchhcCChH
Confidence            122334444456789999999876543333 334556655     347999999999996544

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.41  E-value=8e-13  Score=115.35  Aligned_cols=102  Identities=21%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+|+|++....   +.. |.     .+..           ...++||||....   ..........
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~-----~~~~-----------~~~~iDt~G~~~~---~~~~~~~~~~   58 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQ-----AVEY-----------NDGAIDTPGEYVE---NRRLYSALIV   58 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc---ccc-ce-----eEEE-----------cCeeecCchhhhh---hHHHHHHHHH
Confidence            6899999999999999999876531   111 11     1111           1268999997321   0111222234


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++.||++++|+|++++.+.... .+.   +.     ..+|+++|+||+|+.+.
T Consensus        59 ~~~~ad~vilv~d~~~~~s~~~~-~~~---~~-----~~~p~ilv~NK~Dl~~~  103 (142)
T TIGR02528        59 TAADADVIALVQSATDPESRFPP-GFA---SI-----FVKPVIGLVTKIDLAEA  103 (142)
T ss_pred             HhhcCCEEEEEecCCCCCcCCCh-hHH---Hh-----ccCCeEEEEEeeccCCc
Confidence            57899999999999887665432 222   21     13599999999999754

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04148 RGK RGK subfamily

Probab=99.40  E-value=1.2e-12  Score=124.56  Aligned_cols=119  Identities=21%  Similarity=0.180  Sum_probs=77.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeee-eccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl-~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      +|+++|.+|+|||||+++++........++.+.- +.....+..+.      ....+.+|||||...      .+...+ 
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~------~~~~l~i~Dt~G~~~------~~~~~~-   68 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG------EESTLVVIDHWEQEM------WTEDSC-   68 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC------EEEEEEEEeCCCcch------HHHhHH-
Confidence            7999999999999999999765433222222110 11111121110      124689999999751      111222 


Q ss_pred             Hhcc-cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~-radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                        +. .+|++++|+|++++.+++....+..++..+.. ..+.|+|+|+||+|+....
T Consensus        69 --~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~  122 (221)
T cd04148          69 --MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSR  122 (221)
T ss_pred             --hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccc
Confidence              33 89999999999987777766667776665432 2468999999999997643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.40  E-value=4.9e-13  Score=122.53  Aligned_cols=127  Identities=20%  Similarity=0.348  Sum_probs=81.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      -.+|.++|+.|||||||++.|...+..  . ...|...+...+...        +..+.++|++|....       ...+
T Consensus        14 ~~~ililGl~~sGKTtll~~l~~~~~~--~-~~pT~g~~~~~i~~~--------~~~~~~~d~gG~~~~-------~~~w   75 (175)
T PF00025_consen   14 EIKILILGLDGSGKTTLLNRLKNGEIS--E-TIPTIGFNIEEIKYK--------GYSLTIWDLGGQESF-------RPLW   75 (175)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHSSSEE--E-EEEESSEEEEEEEET--------TEEEEEEEESSSGGG-------GGGG
T ss_pred             EEEEEEECCCccchHHHHHHhhhcccc--c-cCcccccccceeeeC--------cEEEEEEeccccccc-------cccc
Confidence            358999999999999999999865321  1 122333333333332        347999999996432       2234


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG  418 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG  418 (421)
                      ..+++.+|++|||||+++.+...+.. .+.+.+..  +.....|++|++||+|+.++....+....++
T Consensus        76 ~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~--~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~  141 (175)
T PF00025_consen   76 KSYFQNADGIIFVVDSSDPERLQEAKEELKELLND--PELKDIPILILANKQDLPDAMSEEEIKEYLG  141 (175)
T ss_dssp             GGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTS--GGGTTSEEEEEEESTTSTTSSTHHHHHHHTT
T ss_pred             eeeccccceeEEEEecccceeecccccchhhhcch--hhcccceEEEEeccccccCcchhhHHHhhhh
Confidence            45568899999999999755433332 22222221  2345799999999999987655444333444

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04121 Rab40 Rab40 subfamily

Probab=99.40  E-value=1.7e-12  Score=120.84  Aligned_cols=119  Identities=18%  Similarity=0.154  Sum_probs=82.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCe-eeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfT-Tl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ..+|+++|..+||||||+.++...... .+++.| +.+-..-.+..+      .....+.+|||||....       ...
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~------~~~~~l~iwDt~G~~~~-------~~l   71 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLD------GRRVKLQLWDTSGQGRF-------CTI   71 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEEC------CEEEEEEEEeCCCcHHH-------HHH
Confidence            468999999999999999999875422 222211 111111112211      11246899999997543       122


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +..+++.+|++|+|+|++++.+++....|.+++..+.   .+.|+|+|.||+|+...
T Consensus        72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~  125 (189)
T cd04121          72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFK  125 (189)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhc
Confidence            3345689999999999999888888888888887654   36899999999999653

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.40  E-value=1.3e-12  Score=117.70  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=77.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.++||||||++++.+.... ..+..|..+.....+..+.      ....+.++||||..+...    +.   .
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~~----~~---~   67 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVDG------KQVELALWDTAGQEDYDR----LR---P   67 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEECC------EEEEEEEEeCCCchhhhh----cc---c
Confidence            47999999999999999999976532 2233333222222332221      123689999999754311    11   1


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..+|++++|+|+++.++.+++. .+..++..+.   .+.|+++|+||+|+...
T Consensus        68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  120 (175)
T cd01870          68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND  120 (175)
T ss_pred             cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccC
Confidence            2457899999999999876655553 3445555432   46899999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.40  E-value=1.9e-12  Score=121.27  Aligned_cols=115  Identities=23%  Similarity=0.227  Sum_probs=76.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  336 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG  336 (421)
                      ..|+++|.+++|||||+++|+......                ....++|.+.....+...        ..++.++||||
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iDtPG   74 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------NRHYAHVDCPG   74 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--------CeEEEEEECcC
Confidence            479999999999999999997531000                013445555443333321        34789999999


Q ss_pred             ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCC
Q 014655          337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMY  408 (421)
Q Consensus       337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~  408 (421)
                      +.+       +.......+..+|++++|+|+......++ +.++..+..     .++| +|+|+||+|+....
T Consensus        75 ~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~-----~~~~~iIvviNK~D~~~~~  134 (195)
T cd01884          75 HAD-------YIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ-----VGVPYIVVFLNKADMVDDE  134 (195)
T ss_pred             HHH-------HHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCcEEEEEeCCCCCCcH
Confidence            854       23344566788999999999987543333 344555555     3466 77899999997543

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.39  E-value=8.8e-13  Score=142.50  Aligned_cols=113  Identities=30%  Similarity=0.466  Sum_probs=82.0

Q ss_pred             CCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHHHHHhcc
Q 014655          279 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRHLR  356 (421)
Q Consensus       279 G~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~fL~~i~  356 (421)
                      |.||+|||||+|+|++.+..++++|++|.+...+.+...        +.++.++||||+.+....  .+.+.+.++. .+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~--------~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~   71 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ--------GEDIEIVDLPGIYSLTTFSLEEEVARDYLL-NE   71 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC--------CeEEEEEECCCccccCccchHHHHHHHHHh-hc
Confidence            889999999999999998888999999999888877654        246899999998764321  1223333322 25


Q ss_pred             cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          357 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       357 radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+|++++|+|+++.+  .....+ .++..     .++|+++|+||+|+.+..
T Consensus        72 ~aDvvI~VvDat~le--r~l~l~-~ql~~-----~~~PiIIVlNK~Dl~~~~  115 (591)
T TIGR00437        72 KPDLVVNVVDASNLE--RNLYLT-LQLLE-----LGIPMILALNLVDEAEKK  115 (591)
T ss_pred             CCCEEEEEecCCcch--hhHHHH-HHHHh-----cCCCEEEEEehhHHHHhC
Confidence            789999999998632  222222 23332     368999999999986543

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.39  E-value=2.1e-12  Score=117.56  Aligned_cols=120  Identities=14%  Similarity=0.076  Sum_probs=79.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++...+.. ..+..|+-......+..+.      ....+.++||||..+..    .+   ..
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~l---~~   68 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQARIDN------EPALLDILDTAGQAEFT----AM---RD   68 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEEECC------EEEEEEEEeCCCchhhH----HH---hH
Confidence            47999999999999999999875532 1222222111111111111      12368999999976531    12   23


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..+|++++|+|++++.+++....+...+..... ..+.|+++|+||+|+...
T Consensus        69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~  122 (172)
T cd04141          69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ  122 (172)
T ss_pred             HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc
Confidence            446789999999999998888877766666665421 246899999999998654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.39  E-value=2.6e-12  Score=117.28  Aligned_cols=118  Identities=20%  Similarity=0.158  Sum_probs=77.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+.++..... +..|..|..+...-.+..+      .....+.+|||||..+..    .+.   .
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~~---~   67 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD------GKPVNLGLWDTAGQEDYD----RLR---P   67 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCCcceeeeEEEEEEC------CEEEEEEEEECCCchhhh----hhh---h
Confidence            3789999999999999999986542 2233222221111111111      112468999999975431    112   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..+|++|+|+|++++++++... .|..++....   .+.|+++|.||+|+.+.
T Consensus        68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~  120 (174)
T cd01871          68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD  120 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccC
Confidence            3467899999999999877766664 3555555433   36899999999999654

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04134 Rho3 Rho3 subfamily

Probab=99.38  E-value=1.7e-12  Score=119.88  Aligned_cols=118  Identities=20%  Similarity=0.151  Sum_probs=77.4

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||++++....... .+..|........+..+      .....+.+|||||..+..    .+..   .
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~------~~~~~l~i~Dt~G~~~~~----~l~~---~   67 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVD------GLHIELSLWDTAGQEEFD----RLRS---L   67 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEEC------CEEEEEEEEECCCChhcc----cccc---c
Confidence            78999999999999999998765321 22222211111111111      112468999999975431    1211   2


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ++..+|++++|+|++++.+++... .+..++..+.   .+.|+++|+||+|+....
T Consensus        68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~  120 (189)
T cd04134          68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREAR  120 (189)
T ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCh
Confidence            357899999999999887776654 3555555433   368999999999997654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.38  E-value=2.3e-12  Score=109.20  Aligned_cols=120  Identities=21%  Similarity=0.153  Sum_probs=75.7

Q ss_pred             ccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcc
Q 014655          277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR  356 (421)
Q Consensus       277 LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~  356 (421)
                      ++|.+|+|||||+++|.+.......+..|..+.....+...      .....+.++|+||+.+...       .....+.
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~~l~D~~g~~~~~~-------~~~~~~~   67 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVD------GKKVKLQIWDTAGQERFRS-------LRRLYYR   67 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEEC------CEEEEEEEEecCChHHHHh-------HHHHHhc
Confidence            58999999999999999876532222222222222222111      0134799999999876421       1234568


Q ss_pred             cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          357 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       357 radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      .+|++++|+|++.+........++..... .......|+++|+||+|+....+.
T Consensus        68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~~~~  120 (157)
T cd00882          68 GADGIILVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVV  120 (157)
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccccch
Confidence            89999999999986555544433111111 122357999999999999866543

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01875 RhoG RhoG subfamily

Probab=99.38  E-value=2.9e-12  Score=118.69  Aligned_cols=119  Identities=20%  Similarity=0.128  Sum_probs=78.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|..+||||||+.++..... ...|..|.-+.....+..+      .....+.+|||+|..+..    .+   .-
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~e~~~----~l---~~   69 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVFDNYSAQTAVD------GRTVSLNLWDTAGQEEYD----RL---RT   69 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceEeeeEEEEEEC------CEEEEEEEEECCCchhhh----hh---hh
Confidence            4899999999999999999987542 1222222211111111111      112468999999975531    12   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.||++|+|+|++++.+++... .|..++..+.   .+.|+++|+||+||.+..
T Consensus        70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~  123 (191)
T cd01875          70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDA  123 (191)
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcCh
Confidence            3467899999999999888777765 3555565443   468999999999997543

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.38  E-value=2.5e-12  Score=120.82  Aligned_cols=123  Identities=23%  Similarity=0.289  Sum_probs=77.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      ++|+|+|+++||||||+++|...+... .  .++..++...+.....    .....+.++||||+.+.       ...+.
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t--~~s~~~~~~~~~~~~~----~~~~~~~l~D~pG~~~~-------~~~~~   66 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRS-T--VTSIEPNVATFILNSE----GKGKKFRLVDVPGHPKL-------RDKLL   66 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCC-c--cCcEeecceEEEeecC----CCCceEEEEECCCCHHH-------HHHHH
Confidence            368999999999999999998865321 1  2223444444332110    11246899999997643       34456


Q ss_pred             HhcccC-CEEEEEeeCCCC-CChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          353 RHLRRT-RLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       353 ~~i~ra-dvIl~VvD~s~~-~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .++..+ +++|||+|+++. ....+.. .+...+..........|++||+||+|+..+..
T Consensus        67 ~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~  126 (203)
T cd04105          67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP  126 (203)
T ss_pred             HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence            667777 999999999875 2222222 22222222111114689999999999976543

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.37  E-value=3.1e-12  Score=121.47  Aligned_cols=117  Identities=16%  Similarity=0.106  Sum_probs=78.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce--eecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g--~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|++||.+|||||||++++...+... .+. +|......  .+...      .....+.+|||||.....    .+.  
T Consensus        14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~-~~~-~tig~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~~--   79 (219)
T PLN03071         14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYE-PTIGVEVHPLDFFTN------CGKIRFYCWDTAGQEKFG----GLR--   79 (219)
T ss_pred             eEEEEECcCCCCHHHHHHHHhhCCCCC-ccC-CccceeEEEEEEEEC------CeEEEEEEEECCCchhhh----hhh--
Confidence            589999999999999999987654321 111 12111111  11111      012478999999975431    122  


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                       ..++..+|++|+|+|+++..+.+....|..++..+.   .+.|+++|+||+|+...
T Consensus        80 -~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~  132 (219)
T PLN03071         80 -DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR  132 (219)
T ss_pred             -HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhc
Confidence             234678999999999998877777777777776553   46899999999998643

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.37  E-value=3.9e-12  Score=121.65  Aligned_cols=118  Identities=14%  Similarity=0.132  Sum_probs=77.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|++||.++||||||+++++.... ...|..|........+..+.      ....+.||||+|..+..    .+.   -
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~------~~v~L~iwDt~G~e~~~----~l~---~   67 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDK------RRIELNMWDTSGSSYYD----NVR---P   67 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECC------EEEEEEEEeCCCcHHHH----HHh---H
Confidence            4799999999999999999987542 22333332221111122111      12468999999975431    111   1


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..+|++|+|+|++++++++... .|..++..+.   .+.|+|+|.||+|+...
T Consensus        68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~  120 (222)
T cd04173          68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTD  120 (222)
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccc
Confidence            2367899999999999887776663 3444555443   46899999999999653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.37  E-value=3e-12  Score=124.48  Aligned_cols=131  Identities=18%  Similarity=0.183  Sum_probs=84.3

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc---
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---  343 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~---  343 (421)
                      ++....+|+|+|.+|||||||+|+|.+.... +..+..+|...........        +..+.++||||+.+....   
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--------g~~i~vIDTPGl~~~~~~~~~   98 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--------GFKLNIIDTPGLLESVMDQRV   98 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--------CeEEEEEECCCcCcchhhHHH
Confidence            4556679999999999999999999998753 4666667766554433221        247999999999876321   


Q ss_pred             cCchhHHHHHhcc--cCCEEEEEeeCCCCC-ChhhHHHHHHHHHh-cCCCCCCCCEEEEEeCCCCCCCC
Q 014655          344 GKGLGRNFLRHLR--RTRLLVHVIDAAAEN-PVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       344 ~~gl~~~fL~~i~--radvIl~VvD~s~~~-~~~~~~~l~~eL~~-~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +........++++  ..|+++||..+.... ...+. .+.+.+.. +... .-.++++|+||+|...++
T Consensus        99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~-~llk~I~e~fG~~-i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853          99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDL-PLLRAITDSFGPS-IWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHH-HHHHHHHHHhChh-hHhCEEEEEeCCccCCCC
Confidence            1111122223332  578999997665432 23333 34444443 4322 236799999999987554

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.37  E-value=6.6e-12  Score=118.36  Aligned_cols=124  Identities=16%  Similarity=0.049  Sum_probs=81.2

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeee--ccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM--PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~--p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +|+++|.+++|||||++++.+..... .+. .|..  .....+.+...... .....+.+|||+|..+.    ..+.   
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~-~~~-~Tig~~~~~k~~~~~~~~~~-~~~~~l~IwDtaG~e~~----~~l~---   71 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLG-RPS-WTVGCSVDVKHHTYKEGTPE-EKTFFVELWDVGGSESV----KSTR---   71 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCC-CCC-cceeeeEEEEEEEEcCCCCC-CcEEEEEEEecCCchhH----HHHH---
Confidence            78999999999999999999765322 222 2221  11112222110000 11246899999997543    1122   


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-----------------CCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-----------------DYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-----------------~l~~kP~IIVlNK~Dl~~~  407 (421)
                      -.++..+|++|+|+|+++..+.+.+..|.+++.....                 .....|+++|.||+|+.+.
T Consensus        72 ~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            2346789999999999998888888878777765321                 1135899999999999764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.36  E-value=3.9e-12  Score=125.05  Aligned_cols=113  Identities=22%  Similarity=0.188  Sum_probs=76.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCC---CC---ccC------------CCCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK---PD---IAD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  335 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~---~~---ia~------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP  335 (421)
                      +|+++|.+|+|||||+++|....   .+   +.+            ...+|++.....+...        +.++.++|||
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------~~~i~liDTP   72 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--------DHRINIIDTP   72 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--------CEEEEEEECC
Confidence            48999999999999999996321   11   111            1233333333333222        3579999999


Q ss_pred             cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      |+.+.       .....+.++.+|++++|+|+.......+ +.++..+..     .++|+++|+||+|+...
T Consensus        73 G~~df-------~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~-----~~~p~ivviNK~D~~~a  131 (270)
T cd01886          73 GHVDF-------TIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR-----YNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             CcHHH-------HHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence            98653       2345677888999999999987654333 345555554     45899999999999754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04126 Rab20 Rab20 subfamily

Probab=99.36  E-value=3.6e-12  Score=121.71  Aligned_cols=113  Identities=23%  Similarity=0.188  Sum_probs=77.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||++++...+..  .+ .+|...........        ...+.||||||....    ..+.   ..
T Consensus         2 KIvivG~~~vGKTSLi~r~~~~~f~--~~-~~Tig~~~~~~~~~--------~~~l~iwDt~G~e~~----~~l~---~~   63 (220)
T cd04126           2 KVVLLGDMNVGKTSLLHRYMERRFK--DT-VSTVGGAFYLKQWG--------PYNISIWDTAGREQF----HGLG---SM   63 (220)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC--CC-CCccceEEEEEEee--------EEEEEEEeCCCcccc----hhhH---HH
Confidence            7899999999999999999876632  11 12322221111111        236899999997543    1122   23


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      +++.+|++|+|+|+++..+++.+..++..+....  ..+.|+|+|.||+|+..
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~--~~~~piIlVgNK~DL~~  114 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA--NEDCLFAVVGNKLDLTE  114 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence            4678999999999998887777766655555432  24589999999999975

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.36  E-value=3.3e-12  Score=115.58  Aligned_cols=117  Identities=21%  Similarity=0.143  Sum_probs=77.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|+|||||++++.... ....++.|+.+.....+....      ....+.+|||||..+....    .   -.
T Consensus         2 k~~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~----~---~~   67 (173)
T cd04130           2 KCVLVGDGAVGKTSLIVSYTTNG-YPTEYVPTAFDNFSVVVLVDG------KPVRLQLCDTAGQDEFDKL----R---PL   67 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeeeEEEEECC------EEEEEEEEECCCChhhccc----c---cc
Confidence            68999999999999999997654 234455454332222222211      1246889999998553211    1   12


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++.+|++++|+|++++.+.+... .+...+....   .+.|+++|+||+|+...
T Consensus        68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  119 (173)
T cd04130          68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTD  119 (173)
T ss_pred             ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccC
Confidence            457899999999999877666543 3555555432   35899999999999653

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.35  E-value=1.7e-12  Score=119.94  Aligned_cols=116  Identities=28%  Similarity=0.359  Sum_probs=76.7

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccC------------------CCCeeeeccceeecCCCCCCccccccceEEe
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD------------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA  332 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~------------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~ii  332 (421)
                      .+..|+++|..++|||||+.+|+.....+..                  ....|.......+..      ..-...++++
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~------~~~~~~i~~i   75 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK------NENNRKITLI   75 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB------TESSEEEEEE
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc------cccccceeec
Confidence            4568999999999999999999864422211                  011122222222210      0113579999


Q ss_pred             cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ||||+.+.       .....+.+..+|++|+|||+........ ..++..+..     .+.|+++|+||+|+.
T Consensus        76 DtPG~~~f-------~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~-----~~~p~ivvlNK~D~~  135 (188)
T PF00009_consen   76 DTPGHEDF-------IKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE-----LGIPIIVVLNKMDLI  135 (188)
T ss_dssp             EESSSHHH-------HHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH-----TT-SEEEEEETCTSS
T ss_pred             ccccccce-------eecccceecccccceeeeeccccccccc-ccccccccc-----cccceEEeeeeccch
Confidence            99997653       3345566889999999999987654433 445555665     468899999999998

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04131 Rnd Rnd subfamily

Probab=99.35  E-value=4e-12  Score=116.91  Aligned_cols=117  Identities=16%  Similarity=0.154  Sum_probs=80.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.++||||||++++..... ...|..|........+..+.      ....+.+|||+|......    +.   .
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~l~iwDt~G~~~~~~----~~---~   67 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDE------QRIELSLWDTSGSPYYDN----VR---P   67 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECC------EEEEEEEEECCCchhhhh----cc---h
Confidence            3799999999999999999987642 22333332211111121111      124689999999754311    11   1


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+++.||++|+|+|++++.+++.. ..|..++..+.   .+.|+++|.||+||.+
T Consensus        68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~~  119 (178)
T cd04131          68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLRT  119 (178)
T ss_pred             hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC---CCCCEEEEEEChhhhc
Confidence            346789999999999998888874 67777777765   3689999999999864

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.33  E-value=7.6e-12  Score=115.71  Aligned_cols=117  Identities=17%  Similarity=0.161  Sum_probs=80.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+++|||||++++..... ...|..|......-.+..+.      ....+.+|||+|..+..    .+   ..
T Consensus         6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~~~~~~~~~~~~~------~~~~l~iwDtaG~e~~~----~~---~~   71 (182)
T cd04172           6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDT------QRIELSLWDTSGSPYYD----NV---RP   71 (182)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeeeeEEEEEECC------EEEEEEEEECCCchhhH----hh---hh
Confidence            5899999999999999999987542 22333232211111122111      12468999999975431    11   12


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+++.||++++|+|++++.+++.+ ..|..++..+.   .+.|+++|.||+||.+
T Consensus        72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~  123 (182)
T cd04172          72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRT  123 (182)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEeEChhhhc
Confidence            346889999999999998887775 66777777764   3589999999999864

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=99.33  E-value=5.5e-12  Score=116.10  Aligned_cols=118  Identities=22%  Similarity=0.207  Sum_probs=81.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+++|||||+.++...+. ...|..|..+...-.+..+      .....+.+|||+|..+...    +.   .
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~~~~~~~------~~~v~l~i~Dt~G~~~~~~----~~---~   67 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVSVD------GNTVNLGLWDTAGQEDYNR----LR---P   67 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcceeeeEEEEEEC------CEEEEEEEEECCCCccccc----cc---h
Confidence            5799999999999999999997653 2233323222111112111      1124789999999765421    22   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.||++|+|+|++++.+++.. +.|..++..+.   .+.|+++|.||+|+.+.
T Consensus        68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~  120 (176)
T cd04133          68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDD  120 (176)
T ss_pred             hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccC
Confidence            356889999999999998888776 56777776654   36899999999999653

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.33  E-value=5e-12  Score=114.07  Aligned_cols=104  Identities=21%  Similarity=0.233  Sum_probs=67.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+|+|.+.....    .+|     +.+.+..        .  .+|||||+...   .....+....
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~-----~~v~~~~--------~--~~iDtpG~~~~---~~~~~~~~~~   60 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKT-----QAVEFND--------K--GDIDTPGEYFS---HPRWYHALIT   60 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC----ccc-----eEEEECC--------C--CcccCCccccC---CHHHHHHHHH
Confidence            69999999999999999998764211    111     1122110        1  36999997432   1122333445


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++.||++++|+|++.......     .++..+.   ..+|+++|+||+|+...
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~-----~~~~~~~---~~~~ii~v~nK~Dl~~~  106 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLP-----AGLLDIG---VSKRQIAVISKTDMPDA  106 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccC-----HHHHhcc---CCCCeEEEEEccccCcc
Confidence            5789999999999987654322     1222221   35799999999998653

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.32  E-value=8.4e-12  Score=112.63  Aligned_cols=126  Identities=21%  Similarity=0.305  Sum_probs=85.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      -.+|.++|+.||||||++++|.+..+. +.+    |+--++-.+.+.        ..++.++|+-|..       .+...
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~--------~~~L~iwDvGGq~-------~lr~~   76 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYK--------GYTLNIWDVGGQK-------TLRSY   76 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEec--------ceEEEEEEcCCcc-------hhHHH
Confidence            358999999999999999999987632 122    221222223322        3479999999954       45666


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG  418 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG  418 (421)
                      |..+.+.+|++|||||.+++-..++.. .|.+.|.  ...+...|++|++||.|+..+-...+....++
T Consensus        77 W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~--eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~  143 (185)
T KOG0073|consen   77 WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLV--EERLAGAPLLVLANKQDLPGALSLEEISKALD  143 (185)
T ss_pred             HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHh--hhhhcCCceEEEEecCcCccccCHHHHHHhhC
Confidence            777889999999999998754443333 3333333  45567799999999999996654444333333

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.32  E-value=4.2e-12  Score=123.45  Aligned_cols=125  Identities=22%  Similarity=0.258  Sum_probs=95.0

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ...+|.|+|.++||||||||+|...+... +..+.+|..+..-...++        ...+++|||||+-++-..+.....
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~--------~~~l~lwDtPG~gdg~~~D~~~r~  109 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD--------GENLVLWDTPGLGDGKDKDAEHRQ  109 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc--------ccceEEecCCCcccchhhhHHHHH
Confidence            44578899999999999999999655443 444444444333333332        246899999999887655666778


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+.+.|++++++|+.+++...+++.+.+.+..-    .++++++|+|.+|....
T Consensus       110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p  163 (296)
T COG3596         110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG----LDKRVLFVVTQADRAEP  163 (296)
T ss_pred             HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc----cCceeEEEEehhhhhcc
Confidence            8899999999999999999988777777777766542    34899999999998765

>cd04169 RF3 RF3 subfamily

Probab=99.32  E-value=1.6e-11  Score=120.47  Aligned_cols=115  Identities=24%  Similarity=0.258  Sum_probs=74.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccC---------CCCeeee-------------ccceeecCCCCCCccccccceE
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------YPFTTLM-------------PNLGRLDGDPTLGAEKYSSEAT  330 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------~pfTTl~-------------p~~g~v~~~~~~~~~~~~~~i~  330 (421)
                      ..|+|+|++|+|||||+++|+...-.+..         ...|+.+             .....+.        +.+.++.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~--------~~~~~i~   74 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE--------YRDCVIN   74 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe--------eCCEEEE
Confidence            57999999999999999999754322211         0111111             1111111        1235799


Q ss_pred             EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ++||||+.+..       ......++.+|++++|+|++.... ...+.+++.+..     .++|+++++||+|+..+.
T Consensus        75 liDTPG~~df~-------~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~-----~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          75 LLDTPGHEDFS-------EDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL-----RGIPIITFINKLDREGRD  139 (267)
T ss_pred             EEECCCchHHH-------HHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh-----cCCCEEEEEECCccCCCC
Confidence            99999976531       223456788999999999987543 223344555443     368999999999987654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.31  E-value=1.4e-12  Score=125.49  Aligned_cols=122  Identities=34%  Similarity=0.529  Sum_probs=104.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      ++|+|||+|++|||||+..|++....++.|.|||+....|++.+.        ..++.+.|.||+||+|..++|.+++.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~--------gaKiqlldlpgiiegakdgkgrg~qvi  131 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYK--------GAKIQLLDLPGIIEGAKDGKGRGKQVI  131 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecc--------ccceeeecCcchhcccccCCCCccEEE
Confidence            589999999999999999999998889999999999998988765        358999999999999999999999888


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ...+.|.+|++|+|+..+  ...-+.+..||+-+...+.+.|--+...|-|.
T Consensus       132 avartcnli~~vld~~kp--~~hk~~ie~eleg~girlnk~pp~i~~kkKdk  181 (358)
T KOG1487|consen  132 AVARTCNLIFIVLDVLKP--LSHKKIIEKELEGFGIRLNKQPPNIGTKKKDK  181 (358)
T ss_pred             EEeecccEEEEEeeccCc--ccHHHHHHHhhhcceeeccCCCCCcccccccc
Confidence            888899999999999854  44556788899988877777776565666554

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.31  E-value=1.1e-11  Score=119.43  Aligned_cols=113  Identities=25%  Similarity=0.289  Sum_probs=75.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCcc---CC-CC-e-------------eeeccceeecCCCCCCccccccceEEecCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIA---DY-PF-T-------------TLMPNLGRLDGDPTLGAEKYSSEATLADLP  335 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia---~~-pf-T-------------Tl~p~~g~v~~~~~~~~~~~~~~i~iiDtP  335 (421)
                      .|+++|.+|+|||||+++|+...-.+.   .. .. |             |.......+..        ...++.++|||
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~--------~~~~i~liDTP   72 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW--------EDTKVNLIDTP   72 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE--------CCEEEEEEeCC
Confidence            489999999999999999976432211   00 01 1             11111112211        13579999999


Q ss_pred             cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      |+.+.       ......+++.+|++++|+|+++.... +.+.+++.+..     .++|+++|+||+|+..+
T Consensus        73 G~~~f-------~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-----~~~P~iivvNK~D~~~a  131 (237)
T cd04168          73 GHMDF-------IAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK-----LNIPTIIFVNKIDRAGA  131 (237)
T ss_pred             Cccch-------HHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECccccCC
Confidence            98653       22345677889999999999876533 34556666655     36899999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>CHL00071 tufA elongation factor Tu

Probab=99.30  E-value=1.1e-11  Score=128.48  Aligned_cols=117  Identities=21%  Similarity=0.194  Sum_probs=78.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  335 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP  335 (421)
                      ..+|+++|.+|+|||||+++|++....+                ....++|.+.....+...        ..++.++|||
T Consensus        12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------~~~~~~iDtP   83 (409)
T CHL00071         12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------NRHYAHVDCP   83 (409)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC--------CeEEEEEECC
Confidence            3689999999999999999998752211                112455655543333221        2478999999


Q ss_pred             cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCC
Q 014655          336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYD  409 (421)
Q Consensus       336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e  409 (421)
                      |+.+       +.....+.+..+|++++|+|+......++.+ +...+..     .++| +|+|+||+|+.+.++
T Consensus        84 Gh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~-----~g~~~iIvvvNK~D~~~~~~  145 (409)
T CHL00071         84 GHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQ-----VGVPNIVVFLNKEDQVDDEE  145 (409)
T ss_pred             ChHH-------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEEEccCCCCHHH
Confidence            9643       2334456678899999999998654333333 4444544     3578 678999999986543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.30  E-value=1.2e-11  Score=133.60  Aligned_cols=117  Identities=23%  Similarity=0.242  Sum_probs=81.8

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ..+.|+++|.+|+|||||+++|.+.+......++.|.+.....+....       ...++||||||+.+..       ..
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-------~~~i~~iDTPGhe~F~-------~~  151 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-------GKMITFLDTPGHEAFT-------SM  151 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-------CcEEEEEECCCCcchh-------hH
Confidence            447899999999999999999998765555556666554333333211       1279999999986531       12


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+.+..+|++++|+|+.+....+..+.+ ..+..     .+.|+++|+||+|+...
T Consensus       152 r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~-----~~vPiIVviNKiDl~~~  202 (587)
T TIGR00487       152 RARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA-----ANVPIIVAINKIDKPEA  202 (587)
T ss_pred             HHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcccccC
Confidence            23557789999999999876544444433 23332     46899999999999753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04128 Spg1 Spg1p

Probab=99.30  E-value=1.2e-11  Score=114.10  Aligned_cols=116  Identities=21%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      +|+++|..++|||||++++...+.. ..|..|. .+-....+..+.      ....+.+|||+|..+..       ....
T Consensus         2 Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~------~~~~l~iwDt~G~~~~~-------~~~~   67 (182)
T cd04128           2 KIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRG------TEITFSIWDLGGQREFI-------NMLP   67 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECC------EEEEEEEEeCCCchhHH-------HhhH
Confidence            7899999999999999999876432 2232221 111111222211      12468999999975431       1122


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .++..||++++|+|++++.+.++...+.+++..+.+  ...| ++|+||+|+..
T Consensus        68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~  118 (182)
T cd04128          68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFA  118 (182)
T ss_pred             HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccc
Confidence            356889999999999988777777677777766543  2355 68899999963

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.30  E-value=1.6e-11  Score=119.89  Aligned_cols=113  Identities=24%  Similarity=0.262  Sum_probs=74.2

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc---cC-CCCe--------------eeeccceeecCCCCCCccccccceEEecCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI---AD-YPFT--------------TLMPNLGRLDGDPTLGAEKYSSEATLADLP  335 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~-~pfT--------------Tl~p~~g~v~~~~~~~~~~~~~~i~iiDtP  335 (421)
                      +|+|+|.+|||||||+++|......+   .. ...+              |.......+...        ..+++++|||
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--------~~~i~liDtP   72 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--------GHKINLIDTP   72 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--------CEEEEEEECc
Confidence            48999999999999999997532111   00 0111              222222222221        3478999999


Q ss_pred             cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      |..+.       .......+..+|++++|+|++....... ..+++.+..     .+.|+++|+||+|+...
T Consensus        73 G~~~f-------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~-----~~~p~iivvNK~D~~~~  131 (268)
T cd04170          73 GYADF-------VGETRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE-----AGIPRIIFINKMDRERA  131 (268)
T ss_pred             CHHHH-------HHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECCccCCC
Confidence            98653       2234566788999999999987654433 334445554     46899999999998865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.29  E-value=9.9e-12  Score=129.24  Aligned_cols=114  Identities=20%  Similarity=0.183  Sum_probs=76.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLG  321 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~~  321 (421)
                      .+|+++|.+|+|||||+++|+.....+.                               ..+++|++.....+...    
T Consensus         7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~----   82 (425)
T PRK12317          7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD----   82 (425)
T ss_pred             EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC----
Confidence            5799999999999999999985432221                               14566777666555433    


Q ss_pred             ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC--CCChhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655          322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVL  399 (421)
Q Consensus       322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~kP~IIVl  399 (421)
                          ...+.++||||+.+.       .......+..+|++++|+|+++  ....+..+ .+..+..+.    ..|+++|+
T Consensus        83 ----~~~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~-~~~~~~~~~----~~~iivvi  146 (425)
T PRK12317         83 ----KYYFTIVDCPGHRDF-------VKNMITGASQADAAVLVVAADDAGGVMPQTRE-HVFLARTLG----INQLIVAI  146 (425)
T ss_pred             ----CeEEEEEECCCcccc-------hhhHhhchhcCCEEEEEEEcccCCCCCcchHH-HHHHHHHcC----CCeEEEEE
Confidence                347999999997442       2223344678999999999986  32222222 333333321    24689999


Q ss_pred             eCCCCCC
Q 014655          400 NKIDLPE  406 (421)
Q Consensus       400 NK~Dl~~  406 (421)
                      ||+|+..
T Consensus       147 NK~Dl~~  153 (425)
T PRK12317        147 NKMDAVN  153 (425)
T ss_pred             Ecccccc
Confidence            9999975

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.29  E-value=7.7e-12  Score=112.35  Aligned_cols=67  Identities=27%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655          328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  402 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~  402 (421)
                      .+.|+||||+.+......   ....+++..+|+++||+|+.+.....+.+.+.+.+...     ...+++|+||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-----KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-----CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-----CCeEEEEEcCC
Confidence            599999999987544333   33455678999999999998866556666666666542     34499999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.29  E-value=1.5e-11  Score=116.67  Aligned_cols=114  Identities=21%  Similarity=0.189  Sum_probs=72.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-------------------------------cCCCCeeeeccceeecCCCCCCc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLGA  322 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~~~~~  322 (421)
                      .|+++|.+++|||||+.+|...--.+                               ....++|++.....+...     
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~-----   75 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE-----   75 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence            48999999999999999995321111                               112344555544444332     


Q ss_pred             cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC------hhhHHHHHHHHHhcCCCCCCCCEE
Q 014655          323 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP------VNDYRTVKEELRMYNPDYLERPFI  396 (421)
Q Consensus       323 ~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~------~~~~~~l~~eL~~~~~~l~~kP~I  396 (421)
                         +..+.++||||+.+.       ...+.+.+..+|++|+|||+++...      ..+....+..+..+    ..+|++
T Consensus        76 ---~~~i~liDtpG~~~~-------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ii  141 (219)
T cd01883          76 ---KYRFTILDAPGHRDF-------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL----GVKQLI  141 (219)
T ss_pred             ---CeEEEEEECCChHHH-------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc----CCCeEE
Confidence               357999999997543       2345566788999999999987421      11112222222222    236899


Q ss_pred             EEEeCCCCCC
Q 014655          397 VVLNKIDLPE  406 (421)
Q Consensus       397 IVlNK~Dl~~  406 (421)
                      +|+||+|+..
T Consensus       142 ivvNK~Dl~~  151 (219)
T cd01883         142 VAVNKMDDVT  151 (219)
T ss_pred             EEEEcccccc
Confidence            9999999984

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.29  E-value=1.4e-11  Score=118.57  Aligned_cols=117  Identities=18%  Similarity=0.173  Sum_probs=78.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|++||.++||||||++++..... ...|..|........+..+      .....+.||||+|.....    .+   ..
T Consensus        14 ~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~pTi~~~~~~~i~~~------~~~v~l~iwDTaG~e~~~----~~---~~   79 (232)
T cd04174          14 CKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTAGLETE------EQRVELSLWDTSGSPYYD----NV---RP   79 (232)
T ss_pred             EEEEEECCCCCcHHHHHHHHhcCCC-CCCcCCceeeeeEEEEEEC------CEEEEEEEEeCCCchhhH----HH---HH
Confidence            5899999999999999999987542 2233222211111111111      112478999999964321    11   12


Q ss_pred             HhcccCCEEEEEeeCCCCCChhh-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .++..||++++|+|+++..+++. ...|..++..+.   ...|+++|+||+|+..
T Consensus        80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~  131 (232)
T cd04174          80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRT  131 (232)
T ss_pred             HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence            35689999999999998887776 356777777654   3579999999999864

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.29  E-value=1.9e-11  Score=135.34  Aligned_cols=118  Identities=22%  Similarity=0.227  Sum_probs=83.0

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      ....+.|+|+|+.|+|||||+++|...+.......+.|.+.....+...        +..++||||||+.+.       .
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--------~~~ItfiDTPGhe~F-------~  351 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--------GGKITFLDTPGHEAF-------T  351 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--------CEEEEEEECCCCccc-------h
Confidence            3466789999999999999999998766544455566655443333322        247999999998653       1


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ....+.+..+|++|+|||+.+....+..+.+ ..+..     .+.|+|||+||+|+...
T Consensus       352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i-~~a~~-----~~vPiIVviNKiDl~~a  404 (787)
T PRK05306        352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAI-NHAKA-----AGVPIIVAINKIDKPGA  404 (787)
T ss_pred             hHHHhhhhhCCEEEEEEECCCCCCHhHHHHH-HHHHh-----cCCcEEEEEECcccccc
Confidence            2233556789999999999876544444433 33333     46899999999999754

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.28  E-value=5.8e-12  Score=116.82  Aligned_cols=120  Identities=21%  Similarity=0.275  Sum_probs=71.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      ..|.|+|+.|||||+|+..|+.....   ...|...++.......      .....+.++|+||+..       +...++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~---~T~tS~e~n~~~~~~~------~~~~~~~lvD~PGH~r-------lr~~~~   67 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTV---PTVTSMENNIAYNVNN------SKGKKLRLVDIPGHPR-------LRSKLL   67 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEECCGSS------TCGTCECEEEETT-HC-------CCHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcC---CeeccccCCceEEeec------CCCCEEEEEECCCcHH-------HHHHHH
Confidence            46899999999999999999987421   1223344444432211      1135799999999854       333444


Q ss_pred             H---hcccCCEEEEEeeCCCC--CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 R---HLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~---~i~radvIl~VvD~s~~--~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +   ++..+..||||||++.-  +..+..+.|.+.|..-.......|++|++||.|+..+.
T Consensus        68 ~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   68 DELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             HHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             HhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            4   48889999999998741  11222344444444332223568999999999998764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=1.1e-11  Score=114.98  Aligned_cols=124  Identities=19%  Similarity=0.225  Sum_probs=92.3

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  345 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~  345 (421)
                      +..-+.+|.|+|..|+|||.|+.++....-. ..| .+|+  +-....++.+..      ..+++||||.|...      
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~-e~~-~sTIGVDf~~rt~e~~gk------~iKlQIWDTAGQER------   70 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFT-ESY-ISTIGVDFKIRTVELDGK------TIKLQIWDTAGQER------   70 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcc-hhh-cceeeeEEEEEEeeecce------EEEEEeeeccccHH------
Confidence            3456789999999999999999999875421 111 2232  333334443321      24799999999733      


Q ss_pred             chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                       ....+..+.+.|+.||+|+|++...++..+..|..|++.|..  .+.|.++|.||+|+.+..
T Consensus        71 -Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~  130 (205)
T KOG0084|consen   71 -FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKR  130 (205)
T ss_pred             -HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhhe
Confidence             234456778899999999999999889999999999998865  457999999999998754

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.28  E-value=6.8e-12  Score=111.44  Aligned_cols=132  Identities=27%  Similarity=0.339  Sum_probs=94.3

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      .+.-..+.+||.-|+|||||+|.+...+-.  .+...|.--+...+.-.        ...+.++|+||....       .
T Consensus        17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~--edmiptvGfnmrk~tkg--------nvtiklwD~gGq~rf-------r   79 (186)
T KOG0075|consen   17 WKEEMELSLVGLQNSGKTTLVNVIARGQYL--EDMIPTVGFNMRKVTKG--------NVTIKLWDLGGQPRF-------R   79 (186)
T ss_pred             HHheeeEEEEeeccCCcceEEEEEeeccch--hhhcccccceeEEeccC--------ceEEEEEecCCCccH-------H
Confidence            344567889999999999999998764321  22233333333333221        246899999997543       3


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHh--cCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM--YNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN  420 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~--~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~  420 (421)
                      ..+-++.+.+++|+||||+++++.++.   -++||..  +.+.+..+|+++..||.|++++-.....+.++||.
T Consensus        80 smWerycR~v~aivY~VDaad~~k~~~---sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~  150 (186)
T KOG0075|consen   80 SMWERYCRGVSAIVYVVDAADPDKLEA---SRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLS  150 (186)
T ss_pred             HHHHHHhhcCcEEEEEeecCCcccchh---hHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcc
Confidence            345667788999999999998765443   3344443  45677899999999999999998888888888874

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.26  E-value=2.7e-11  Score=133.31  Aligned_cols=118  Identities=23%  Similarity=0.195  Sum_probs=80.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc------cC------------CCCeeeeccceeecCCCCCCccccccceEE
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL  331 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i------a~------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i  331 (421)
                      ..+.+|+++|.+|+|||||+++|......+      .+            ...+|++.....+...        +.++.+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--------~~~i~l   79 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--------GHRINI   79 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--------CeEEEE
Confidence            446789999999999999999996432111      11            2334444444444332        357999


Q ss_pred             ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +||||+.+..       ......++.+|++++|+|+......++. .++..+..     .++|+++|+||+|+..+.
T Consensus        80 iDTPG~~~~~-------~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-----~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        80 IDTPGHVDFT-------VEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR-----YEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             EECCCCcchh-------HHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH-----cCCCEEEEEECCCCCCCC
Confidence            9999997531       1345667889999999999876544443 34445554     358999999999998654

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.25  E-value=1.9e-11  Score=108.55  Aligned_cols=118  Identities=22%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      +|+++|.+++|||||++++.+.... ..+..|. .+.....+....      ....+.+||++|..+..       ....
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~~-------~~~~   66 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFP-ENYIPTIGIDSYSKEVSIDG------KPVNLEIWDTSGQERFD-------SLRD   66 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTT-SSSETTSSEEEEEEEEEETT------EEEEEEEEEETTSGGGH-------HHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccc-cccccccccccccccccccc------ccccccccccccccccc-------cccc
Confidence            6899999999999999999986532 2222222 222222222221      23479999999965431       1112


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.+|++++|+|++++.+.+.+..|..++..+.+  ...|+++|.||.|+.+.
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~  119 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDE  119 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGG
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccceeeecccccccc
Confidence            346789999999999998888888888888887765  35899999999998863

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.25  E-value=2.5e-11  Score=133.38  Aligned_cols=121  Identities=19%  Similarity=0.162  Sum_probs=82.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ...+.|+|+|++|+|||||+++|+.........++.|.+.....+....    ......++||||||+...       ..
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~----~~~~~kItfiDTPGhe~F-------~~  310 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY----KDENQKIVFLDTPGHEAF-------SS  310 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe----cCCceEEEEEECCcHHHH-------HH
Confidence            5668999999999999999999998765544444555443322222110    001247999999997543       22


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...+.+..+|++|+|||+.+....+..+.+. .+..     .+.|+|+|+||+|+...
T Consensus       311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k~-----~~iPiIVViNKiDl~~~  362 (742)
T CHL00189        311 MRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQA-----ANVPIIVAINKIDKANA  362 (742)
T ss_pred             HHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHHh-----cCceEEEEEECCCcccc
Confidence            2345678899999999998765444444433 3333     46899999999999764

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.25  E-value=3.8e-11  Score=114.87  Aligned_cols=119  Identities=19%  Similarity=0.143  Sum_probs=72.9

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccC-CCC---------------eeeeccceeecCCCC--CCccccccceEEecCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF---------------TTLMPNLGRLDGDPT--LGAEKYSSEATLADLP  335 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~-~pf---------------TTl~p~~g~v~~~~~--~~~~~~~~~i~iiDtP  335 (421)
                      .|+++|..++|||||+.+|....-.+.. ...               .|+......+.+...  .........+.++|||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999999764322210 011               111111111111100  0000113468999999


Q ss_pred             cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      |+.+.       .......+..+|++++|+|+......+....+. .+..     .+.|+++|+||+|+.
T Consensus        82 G~~~f-------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~-----~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDF-------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK-----ERVKPVLVINKIDRL  138 (222)
T ss_pred             Ccccc-------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH-----cCCCEEEEEECCCcc
Confidence            98764       234456778999999999998765544433333 3332     357999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.25  E-value=3.4e-11  Score=120.09  Aligned_cols=127  Identities=20%  Similarity=0.230  Sum_probs=78.9

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ...+|+++|.+|+||||++|+|++.+... +.+..+|..+........        +.++.|+||||+.+....++....
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--------G~~l~VIDTPGL~d~~~~~e~~~~  108 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--------GFTLNIIDTPGLIEGGYINDQAVN  108 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--------CeEEEEEECCCCCchHHHHHHHHH
Confidence            34589999999999999999999988643 555555555543332211        357999999999876332222111


Q ss_pred             HHHHhc--ccCCEEEEEeeCCCC-CChhhHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHL--RRTRLLVHVIDAAAE-NPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i--~radvIl~VvD~s~~-~~~~~~~~l~~eL~-~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ....++  ...|++|||.++... ....+.. +.+.+. .|... .-.++|+|+|++|..+.
T Consensus       109 ~ik~~l~~~g~DvVLyV~rLD~~R~~~~Dkq-lLk~Iqe~FG~~-iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       109 IIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQ-VIRAITDSFGKD-IWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHHHHhhcCCCCEEEEEeccCcccCCHHHHH-HHHHHHHHhhhh-hhccEEEEEECCccCCC
Confidence            111112  258999999655432 2223333 333333 33322 34679999999997753

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.24  E-value=4.6e-11  Score=112.06  Aligned_cols=124  Identities=23%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc--cC-CCCeeeeccceeecCC---------C----------CC------Ccccc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI--AD-YPFTTLMPNLGRLDGD---------P----------TL------GAEKY  325 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i--a~-~pfTTl~p~~g~v~~~---------~----------~~------~~~~~  325 (421)
                      .|+++|+.++|||||+.+|++.....  .. .-..|.......+...         +          ..      .....
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            68999999999999999998652111  00 0011111111111100         0          00      00001


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ...+.||||||..+       +...++..+..+|++++|+|++.+....+....+..+..+.    ..|+++|+||+|+.
T Consensus        82 ~~~i~~iDtPG~~~-------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~----~~~iiivvNK~Dl~  150 (203)
T cd01888          82 VRHVSFVDCPGHEI-------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG----LKHIIIVQNKIDLV  150 (203)
T ss_pred             ccEEEEEECCChHH-------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC----CCcEEEEEEchhcc
Confidence            25799999999632       44566777888999999999987432222222333444322    25789999999997


Q ss_pred             CCC
Q 014655          406 EMY  408 (421)
Q Consensus       406 ~~~  408 (421)
                      ...
T Consensus       151 ~~~  153 (203)
T cd01888         151 KEE  153 (203)
T ss_pred             CHH
Confidence            643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.24  E-value=6.3e-11  Score=111.42  Aligned_cols=111  Identities=17%  Similarity=0.139  Sum_probs=75.5

Q ss_pred             cCCCCCChhHHHHHHhcCCCCccCCCCeeeeccc--eeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhc
Q 014655          278 VGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL  355 (421)
Q Consensus       278 VG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~--g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i  355 (421)
                      ||.++||||||++++...... ..|.. |+....  ..+..+.      ....+.||||||..+..    .+   ...++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~-~~~~~-Tig~~~~~~~~~~~~------~~~~l~iwDt~G~e~~~----~l---~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFE-KKYVA-TLGVEVHPLVFHTNR------GPIRFNVWDTAGQEKFG----GL---RDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCC-CCCCC-ceeEEEEEEEEEECC------EEEEEEEEECCCchhhh----hh---hHHHh
Confidence            699999999999999865421 22222 221111  1111110      12478999999975431    11   23457


Q ss_pred             ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          356 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       356 ~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      +.+|++|+|+|+++..+.+....|..++..+.   .+.|+++|+||+|+..
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~  113 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKD  113 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence            88999999999998877777777777777654   3689999999999864

Ran is involved in the active transport of proteins through nuclear pores.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.24  E-value=3.9e-11  Score=125.80  Aligned_cols=119  Identities=21%  Similarity=0.240  Sum_probs=78.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcC------CCCc----------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHA------KPDI----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~------~~~i----------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      +...+|+++|.+|+|||||+++|++.      ....          ....++|++.....++..        ..+++++|
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------~~~i~~iD  130 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--------KRHYAHVD  130 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------CeEEEEEE
Confidence            44467999999999999999999732      1000          112566666544333322        24789999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYD  409 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e  409 (421)
                      |||+.+       +.......+..+|++++|+|+......++ +.+...+..     .+.| +|+|+||+|+.+.++
T Consensus       131 tPGh~~-------f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~-----~gip~iIvviNKiDlv~~~~  194 (447)
T PLN03127        131 CPGHAD-------YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-----VGVPSLVVFLNKVDVVDDEE  194 (447)
T ss_pred             CCCccc-------hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH-----cCCCeEEEEEEeeccCCHHH
Confidence            999853       22333345567999999999986544343 334445554     4578 478899999986443

>cd04167 Snu114p Snu114p subfamily

Probab=99.24  E-value=4.1e-11  Score=113.01  Aligned_cols=116  Identities=22%  Similarity=0.241  Sum_probs=71.9

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccC----------C---------CCeeeeccceeecCCCCCCccccccceEEecC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------Y---------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  334 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~----------~---------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt  334 (421)
                      +|+++|.+++|||||+++|+.....+..          +         ...|.......+.....   ......+.++||
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~---~~~~~~i~iiDt   78 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS---KGKSYLFNIIDT   78 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC---CCCEEEEEEEEC
Confidence            6899999999999999999875432210          1         01111111111111000   011246899999


Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ||+.+.       .......+..+|++++|+|++....... +.+...+..     ...|+++|+||+|+.
T Consensus        79 pG~~~f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-----~~~p~iiviNK~D~~  136 (213)
T cd04167          79 PGHVNF-------MDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-----EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCCcch-------HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECcccC
Confidence            998653       2234566789999999999987654433 223333332     348999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.22  E-value=4.4e-11  Score=107.72  Aligned_cols=111  Identities=17%  Similarity=0.131  Sum_probs=75.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.++||||||+.++...... ..++ +|.......+..+.      ....+.+|||+|....            .
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~-~~~~-~~~~~~~~~i~~~~------~~~~l~i~D~~g~~~~------------~   61 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYV-QLES-PEGGRFKKEVLVDG------QSHLLLIRDEGGAPDA------------Q   61 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCC-CCCC-CCccceEEEEEECC------EEEEEEEEECCCCCch------------h
Confidence            6899999999999999988754321 1121 11111111122211      1236899999997421            2


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ..+.+|++++|+|++++.+++....++.++..+. ...+.|+++|.||+|+.
T Consensus        62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~  112 (158)
T cd04103          62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAIS  112 (158)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhh
Confidence            3467999999999999888888777877777653 22457999999999985

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.22  E-value=4.4e-11  Score=129.22  Aligned_cols=114  Identities=22%  Similarity=0.168  Sum_probs=78.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .|+++|.+|+|||||+++|++.....   ....+.|.+.....+...        +..+.+|||||+.+       +...
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--------~~~v~~iDtPGhe~-------f~~~   66 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--------DYRLGFIDVPGHEK-------FISN   66 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--------CEEEEEEECCCHHH-------HHHH
Confidence            58999999999999999999754221   223456666554444432        24789999999643       2334


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~  408 (421)
                      .+..+..+|++++|||+++....+..+.+ ..+..     .+.| ++||+||+|+.+.+
T Consensus        67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl-~il~~-----lgi~~iIVVlNK~Dlv~~~  119 (581)
T TIGR00475        67 AIAGGGGIDAALLVVDADEGVMTQTGEHL-AVLDL-----LGIPHTIVVITKADRVNEE  119 (581)
T ss_pred             HHhhhccCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCCCCCHH
Confidence            55667889999999999875434443333 34443     3567 99999999998644

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK00007 elongation factor G; Reviewed

Probab=99.22  E-value=5.5e-11  Score=130.96  Aligned_cols=118  Identities=21%  Similarity=0.168  Sum_probs=81.6

Q ss_pred             hhhceecccCCCCCChhHHHHHHhc---CCCCc---c------------CCCCeeeeccceeecCCCCCCccccccceEE
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITH---AKPDI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL  331 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~---~~~~i---a------------~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i  331 (421)
                      ..+.+|+|+|.+|+|||||+++|..   ....+   .            ....+|++.....+...        +..+.+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--------~~~~~l   79 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--------DHRINI   79 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--------CeEEEE
Confidence            3467999999999999999999963   21111   1            13345555444444322        357999


Q ss_pred             ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +||||+.+.       .....+.+..+|++|+|+|+......++. .++..+..     .++|+|+++||+|+..++
T Consensus        80 iDTPG~~~f-------~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~-----~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         80 IDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK-----YKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             EeCCCcHHH-------HHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH-----cCCCEEEEEECCCCCCCC
Confidence            999998753       12345667889999999999876544443 35555555     458999999999998644

>PRK12739 elongation factor G; Reviewed

Probab=99.22  E-value=4.7e-11  Score=131.42  Aligned_cols=118  Identities=22%  Similarity=0.163  Sum_probs=81.0

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCC---Cc---c------------CCCCeeeeccceeecCCCCCCccccccceEE
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKP---DI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL  331 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~---~i---a------------~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i  331 (421)
                      ..+.+|+++|.+|+|||||+++|....-   .+   .            ....+|++.....+...        +.++.+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------~~~i~l   77 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--------GHRINI   77 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--------CEEEEE
Confidence            3467899999999999999999964211   11   1            12334444433333322        357999


Q ss_pred             ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +||||+.+.       .....+.+..+|++++|+|+......++ +.++..+..     .++|+|+++||+|+..++
T Consensus        78 iDTPG~~~f-------~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~-----~~~p~iv~iNK~D~~~~~  141 (691)
T PRK12739         78 IDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK-----YGVPRIVFVNKMDRIGAD  141 (691)
T ss_pred             EcCCCHHHH-------HHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECCCCCCCC
Confidence            999998653       2245677888999999999987654444 345555554     358999999999998643

>PRK12736 elongation factor Tu; Reviewed

Probab=99.21  E-value=6.4e-11  Score=122.26  Aligned_cols=120  Identities=21%  Similarity=0.211  Sum_probs=78.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      +.-.+|+++|.+++|||||+++|++.....                ....++|++.....+...        ...+.++|
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~--------~~~i~~iD   81 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE--------KRHYAHVD   81 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC--------CcEEEEEE
Confidence            344689999999999999999998632100                013455555433222211        24789999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCCc
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYDD  410 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e~  410 (421)
                      |||+.+.       ....+..+..+|++++|+|+.......+.+ ++..+..     .++| +|+|+||+|+.+.++.
T Consensus        82 tPGh~~f-------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~-----~g~~~~IvviNK~D~~~~~~~  146 (394)
T PRK12736         82 CPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQ-----VGVPYLVVFLNKVDLVDDEEL  146 (394)
T ss_pred             CCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH-----cCCCEEEEEEEecCCcchHHH
Confidence            9997532       233455667899999999998754444433 3344444     3577 6788999999855443

>PRK12735 elongation factor Tu; Reviewed

Probab=99.20  E-value=7.8e-11  Score=121.71  Aligned_cols=117  Identities=24%  Similarity=0.242  Sum_probs=75.5

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC-----CCc-----------cCCCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK-----PDI-----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  334 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~-----~~i-----------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt  334 (421)
                      ...+|+++|.+|+|||||+++|+...     ...           ....+.|.+.....+...        ..++.++||
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--------~~~i~~iDt   82 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--------NRHYAHVDC   82 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC--------CcEEEEEEC
Confidence            34589999999999999999998621     110           113345555433222221        247899999


Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEMY  408 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl~~~~  408 (421)
                      ||+.+       +.......+..+|++++|+|+......+. ..++..+..     .+.|.+ +|+||+|+.+.+
T Consensus        83 PGh~~-------f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~-----~gi~~iivvvNK~Dl~~~~  144 (396)
T PRK12735         83 PGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-----VGVPYIVVFLNKCDMVDDE  144 (396)
T ss_pred             CCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH-----cCCCeEEEEEEecCCcchH
Confidence            99743       23344566778999999999986433333 333444443     357865 579999997543

>PLN00023 GTP-binding protein; Provisional

Probab=99.20  E-value=9.3e-11  Score=117.72  Aligned_cols=126  Identities=19%  Similarity=0.160  Sum_probs=81.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeec--cceeecCCC-------CCCccccccceEEecCCcccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDP-------TLGAEKYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p--~~g~v~~~~-------~~~~~~~~~~i~iiDtPGlie~a~~  343 (421)
                      .+|+|+|..+||||||++++.+..... .+.. |+..  ....+.++.       ...+......+.||||+|.....  
T Consensus        22 iKIVLLGdsGVGKTSLI~rf~~g~F~~-~~~p-TIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr--   97 (334)
T PLN00023         22 VRVLVVGDSGVGKSSLVHLIVKGSSIA-RPPQ-TIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK--   97 (334)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCccc-ccCC-ceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh--
Confidence            589999999999999999998765321 2211 2211  111222110       00000112468999999975431  


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC----------CCCCCCEEEEEeCCCCCCC
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----------DYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~----------~l~~kP~IIVlNK~Dl~~~  407 (421)
                        .+.   -.+++.+|++|+|+|+++..+.+.+..|.+++.....          .....|++||.||+||...
T Consensus        98 --sL~---~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         98 --DCR---SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             --hhh---HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence              122   2346789999999999998888888888888776521          1125799999999999654

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.20  E-value=6.4e-11  Score=110.78  Aligned_cols=122  Identities=19%  Similarity=0.105  Sum_probs=75.4

Q ss_pred             ceecccCCCCCChhHHHH-HHhcCCCC----ccCCCCeee--eccceeecCC--CCCCccccccceEEecCCcccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLA-AITHAKPD----IADYPFTTL--MPNLGRLDGD--PTLGAEKYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLn-aLt~~~~~----ia~~pfTTl--~p~~g~v~~~--~~~~~~~~~~~i~iiDtPGlie~a~~  343 (421)
                      .+|+++|.++||||||+. .+.+....    ...|..|.-  +.....+...  ...........+.+|||+|..+.   
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~---   79 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK---   79 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence            489999999999999995 56543221    122322221  1000000000  00000011347899999997531   


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                         +..   .+++.||++++|+|++++.+.+... .|.+++..+.   .+.|+++|+||+||..
T Consensus        80 ---~~~---~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~  134 (195)
T cd01873          80 ---DRR---FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRY  134 (195)
T ss_pred             ---hhc---ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccc
Confidence               111   2468899999999999888777775 4666776543   3679999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.20  E-value=7.4e-11  Score=127.72  Aligned_cols=120  Identities=23%  Similarity=0.250  Sum_probs=78.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCC---------------CCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  336 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG  336 (421)
                      +.+|+++|.+++|||||+++|......+...               .+.|.......+.+.. .  +.....+.+|||||
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~-~--~g~~~~l~liDTPG   79 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA-K--DGETYVLNLIDTPG   79 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc-C--CCCEEEEEEEECCC
Confidence            5689999999999999999998754322111               1222222211121110 0  00124789999999


Q ss_pred             ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +.+.       .....+.++.||++|+|+|+++....++...++..+.      .+.|+++|+||+|+...
T Consensus        80 ~~dF-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~  137 (595)
T TIGR01393        80 HVDF-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSA  137 (595)
T ss_pred             cHHH-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCcc
Confidence            8764       2234566788999999999998766666555554443      35799999999999754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04129 Rho2 Rho2 subfamily

Probab=99.19  E-value=6e-11  Score=109.23  Aligned_cols=116  Identities=22%  Similarity=0.239  Sum_probs=74.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+++|||||+++|...... ..+..|+.+.....+....      ....+.++||||..+...    +..   .
T Consensus         3 Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~~~----~~~---~   68 (187)
T cd04129           3 KLVIVGDGACGKTSLLSVFTLGEFP-EEYHPTVFENYVTDCRVDG------KPVQLALWDTAGQEEYER----LRP---L   68 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEECC------EEEEEEEEECCCChhccc----cch---h
Confidence            7999999999999999999854421 1222222222122222111      123578999999754321    111   2


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+..+|++++|+|+++.++.+++. .|..++....   .+.|+++|.||+|+..
T Consensus        69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~  119 (187)
T cd04129          69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQ  119 (187)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhh
Confidence            357899999999998776666654 3555665433   3589999999999854

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=9.6e-11  Score=109.75  Aligned_cols=122  Identities=19%  Similarity=0.164  Sum_probs=91.0

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCee--eeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT--LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT--l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      ..+.+|.+||.++||||+|+-++....... .+ .+|  ++-...++..+.      ....+++|||.|....       
T Consensus        10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~-~~-~sTiGIDFk~kti~l~g------~~i~lQiWDtaGQerf-------   74 (207)
T KOG0078|consen   10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNT-SF-ISTIGIDFKIKTIELDG------KKIKLQIWDTAGQERF-------   74 (207)
T ss_pred             ceEEEEEEECCCCCchhHhhhhhhhccCcC-Cc-cceEEEEEEEEEEEeCC------eEEEEEEEEcccchhH-------
Confidence            456799999999999999999998765322 11 122  233333444332      1357899999997543       


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+-.+++.|+.+++|+|+++..+++....|+.+++++.+.  ..|.++|.||+|+....
T Consensus        75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R  133 (207)
T KOG0078|consen   75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKR  133 (207)
T ss_pred             HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccccc
Confidence            445667889999999999999988888888888888887653  68999999999998743

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.18  E-value=1e-10  Score=109.26  Aligned_cols=113  Identities=19%  Similarity=0.253  Sum_probs=68.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cC----CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~----~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      .+|+++|.+|||||||+|+|++..... ..    ..-+|...  ..+...      . ...+.++||||+.+...    .
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~------~-~~~l~l~DtpG~~~~~~----~   68 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHP------K-FPNVTLWDLPGIGSTAF----P   68 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecC------C-CCCceEEeCCCCCcccC----C
Confidence            379999999999999999999854211 10    00111111  111100      0 13689999999875421    1


Q ss_pred             hHHHHHh--cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          348 GRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       348 ~~~fL~~--i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ...+++.  +..+|++++|.|..  .. +.-..+.+++..+     .+|+++|+||+|+..
T Consensus        69 ~~~~l~~~~~~~~d~~l~v~~~~--~~-~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~  121 (197)
T cd04104          69 PDDYLEEMKFSEYDFFIIISSTR--FS-SNDVKLAKAIQCM-----GKKFYFVRTKVDRDL  121 (197)
T ss_pred             HHHHHHHhCccCcCEEEEEeCCC--CC-HHHHHHHHHHHHh-----CCCEEEEEecccchh
Confidence            2233443  46789998885532  22 2223455566653     589999999999954

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK00049 elongation factor Tu; Reviewed

Probab=99.18  E-value=9.7e-11  Score=121.02  Aligned_cols=119  Identities=24%  Similarity=0.252  Sum_probs=78.3

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCC----------c------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPD----------I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~----------i------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      +...+|+++|.+++|||||+++|+.....          .      ....++|++.....+...        +.++.++|
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iD   81 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE--------KRHYAHVD   81 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC--------CeEEEEEE
Confidence            34468999999999999999999863110          0      113455666543333221        34789999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEMYD  409 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl~~~~e  409 (421)
                      |||+.+       +.......+..+|++++|+|+..+....+ +.++..+..     .+.|.+ +|+||+|+...++
T Consensus        82 tPG~~~-------f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~-----~g~p~iiVvvNK~D~~~~~~  145 (396)
T PRK00049         82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-----VGVPYIVVFLNKCDMVDDEE  145 (396)
T ss_pred             CCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH-----cCCCEEEEEEeecCCcchHH
Confidence            999743       23334455688999999999987543333 334445554     357876 5899999986433

>PRK09866 hypothetical protein; Provisional

Probab=99.18  E-value=2.7e-10  Score=122.17  Aligned_cols=74  Identities=26%  Similarity=0.394  Sum_probs=52.5

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+++++||||+.+..  ...+.....+.+..+|+|+||+|+.......+ +.+.+.|...+   ...|+++|+||+|+.+
T Consensus       230 ~QIIFVDTPGIhk~~--~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~---K~~PVILVVNKIDl~d  303 (741)
T PRK09866        230 GQLTLLDTPGPNEAG--QPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG---QSVPLYVLVNKFDQQD  303 (741)
T ss_pred             CCEEEEECCCCCCcc--chHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC---CCCCEEEEEEcccCCC
Confidence            458999999997632  12245455567999999999999987544444 34566666532   1259999999999874

>PRK10218 GTP-binding protein; Provisional

Probab=99.17  E-value=1.7e-10  Score=125.02  Aligned_cols=116  Identities=19%  Similarity=0.238  Sum_probs=78.3

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc-cC---------------CCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  334 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt  334 (421)
                      .+.+|+++|..++|||||+++|+.....+ ..               ....|.......+.+.        +..+.+|||
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~--------~~~inliDT   75 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN--------DYRINIVDT   75 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC--------CEEEEEEEC
Confidence            46789999999999999999998642222 11               1223333333333322        357999999


Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ||+.+.       .......++.+|++++|+|++.....+. +.++..+..     .+.|.++|+||+|+..+
T Consensus        76 PG~~df-------~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~-----~gip~IVviNKiD~~~a  135 (607)
T PRK10218         76 PGHADF-------GGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA-----YGLKPIVVINKVDRPGA  135 (607)
T ss_pred             CCcchh-------HHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH-----cCCCEEEEEECcCCCCC
Confidence            998654       2234456788999999999987543333 334444443     46899999999998754

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.17  E-value=1.4e-10  Score=125.53  Aligned_cols=114  Identities=22%  Similarity=0.273  Sum_probs=76.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccC----------------CCCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  336 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~----------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG  336 (421)
                      .+|+++|+.++|||||+++|+...-.+..                .-+.|.......+.+.        +..+.++||||
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~--------~~kinlIDTPG   73 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN--------GTKINIVDTPG   73 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC--------CEEEEEEECCC
Confidence            57999999999999999999863221110                1122333322233322        35799999999


Q ss_pred             ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +.+.       .....+.+..+|++++|||+.... ..+.+.++..+..     .+.|+++|+||+|+..+
T Consensus        74 h~DF-------~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~-----~~ip~IVviNKiD~~~a  131 (594)
T TIGR01394        74 HADF-------GGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPSA  131 (594)
T ss_pred             HHHH-------HHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH-----CCCCEEEEEECCCCCCc
Confidence            8654       223456678899999999998753 3344455555554     35899999999999754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.16  E-value=1.3e-10  Score=122.63  Aligned_cols=119  Identities=19%  Similarity=0.209  Sum_probs=77.7

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      +...+|+++|.+++|||||+++|+.....+                ....+.|++.....+...        ...+.++|
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--------~~~i~liD  150 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--------NRHYAHVD  150 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--------CcEEEEEE
Confidence            344679999999999999999998632211                112233443333223221        34789999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYD  409 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e  409 (421)
                      |||+.+.       .......+..+|++++|||+......+. +.++..+..     .++| +|+|+||+|+.+.++
T Consensus       151 tPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~-----~gi~~iIvvvNK~Dl~~~~~  214 (478)
T PLN03126        151 CPGHADY-------VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-----VGVPNMVVFLNKQDQVDDEE  214 (478)
T ss_pred             CCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCeEEEEEecccccCHHH
Confidence            9997653       2334556678999999999987644333 334444554     3577 678999999986443

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.16  E-value=1.9e-10  Score=124.21  Aligned_cols=121  Identities=21%  Similarity=0.146  Sum_probs=74.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC----------CccccccceEEecCCccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----------GAEKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----------~~~~~~~~i~iiDtPGlie~a~  342 (421)
                      +-|+++|.+|+|||||+++|++..........+|.+.....+..+...          ........+++|||||+...  
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f--   82 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF--   82 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH--
Confidence            569999999999999999999875433222223332111111111000          00000024899999997543  


Q ss_pred             ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                           .......+..+|++++|+|+++....++++.+ ..+..     .+.|+++|+||+|+..
T Consensus        83 -----~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~~-----~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        83 -----TNLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YKTPFVVAANKIDRIP  135 (590)
T ss_pred             -----HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHHH-----cCCCEEEEEECCCccc
Confidence                 11223456789999999999875544454433 33333     3689999999999974

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.15  E-value=1.3e-10  Score=119.84  Aligned_cols=119  Identities=21%  Similarity=0.216  Sum_probs=77.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCC------C----c------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKP------D----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~------~----i------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      +.-..|+++|.+++|||||+++|+....      .    .      ....++|++.....+...        +.++.++|
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~--------~~~~~liD   81 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE--------NRHYAHVD   81 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC--------CEEEEEEE
Confidence            3346899999999999999999974310      0    0      112455665543333211        24689999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEMYD  409 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl~~~~e  409 (421)
                      |||+.+.       ....+..+..+|++++|+|+......++.+ ++..+..     .+.|.+ +|+||+|+.+.++
T Consensus        82 tpGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e-~l~~~~~-----~gi~~iIvvvNK~Dl~~~~~  145 (394)
T TIGR00485        82 CPGHADY-------VKNMITGAAQMDGAILVVSATDGPMPQTRE-HILLARQ-----VGVPYIVVFLNKCDMVDDEE  145 (394)
T ss_pred             CCchHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEEEecccCCHHH
Confidence            9998542       234456667899999999998754334333 3344444     356755 6899999986443

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.15  E-value=3.3e-10  Score=106.58  Aligned_cols=119  Identities=17%  Similarity=0.116  Sum_probs=74.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++...... ..| .+|............    ..-...+.++||+|..+.    ..+   ..
T Consensus        10 ~kv~liG~~g~GKTtLi~~~~~~~~~-~~~-~~t~~~~~~~~~~~~----~~~~i~i~~~Dt~g~~~~----~~~---~~   76 (215)
T PTZ00132         10 FKLILVGDGGVGKTTFVKRHLTGEFE-KKY-IPTLGVEVHPLKFYT----NCGPICFNVWDTAGQEKF----GGL---RD   76 (215)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhCCCC-CCC-CCccceEEEEEEEEE----CCeEEEEEEEECCCchhh----hhh---hH
Confidence            58999999999999999765543311 111 122222221111100    001246899999996432    111   12


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..++++++|+|+++..+......+...+....   .+.|+++|+||+|+.+.
T Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~  128 (215)
T PTZ00132         77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDR  128 (215)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccc
Confidence            34567899999999998777666666666665443   35899999999998654

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.15  E-value=2.3e-10  Score=122.26  Aligned_cols=120  Identities=22%  Similarity=0.221  Sum_probs=77.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCc---cC------CCCeee-------------eccceeecCCCCCCcccc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---AD------YPFTTL-------------MPNLGRLDGDPTLGAEKY  325 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~------~pfTTl-------------~p~~g~v~~~~~~~~~~~  325 (421)
                      |...+.+|+|+|++++|||||+++|+...-.+   ..      ...++.             ......+.+.        
T Consensus         6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~--------   77 (526)
T PRK00741          6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR--------   77 (526)
T ss_pred             hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC--------
Confidence            45667799999999999999999996322111   11      111111             1111112111        


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      +..+.++||||+.+.       .....+.+..+|++|+|+|++.... ...+.+++....     .+.|+++++||+|+.
T Consensus        78 ~~~inliDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~-----~~iPiiv~iNK~D~~  144 (526)
T PRK00741         78 DCLINLLDTPGHEDF-------SEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL-----RDTPIFTFINKLDRD  144 (526)
T ss_pred             CEEEEEEECCCchhh-------HHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh-----cCCCEEEEEECCccc
Confidence            347999999998653       2234566788999999999987543 333445555544     468999999999987


Q ss_pred             CCC
Q 014655          406 EMY  408 (421)
Q Consensus       406 ~~~  408 (421)
                      .+.
T Consensus       145 ~a~  147 (526)
T PRK00741        145 GRE  147 (526)
T ss_pred             ccC
Confidence            654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.15  E-value=1.5e-10  Score=120.52  Aligned_cols=116  Identities=21%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTL  320 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~  320 (421)
                      ..+|+++|.+++|||||+++|+...-.+.                               ...+.|++.....+...   
T Consensus         7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~---   83 (426)
T TIGR00483         7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD---   83 (426)
T ss_pred             eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC---
Confidence            46899999999999999999975321110                               12245555554444432   


Q ss_pred             CccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChh--hHHHHHHHHHhcCCCCCCCCEEEE
Q 014655          321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVV  398 (421)
Q Consensus       321 ~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~--~~~~l~~eL~~~~~~l~~kP~IIV  398 (421)
                           ...+.|+||||+.+       +....+..+..+|++++|+|+++.....  +.......+..+    ...|+++|
T Consensus        84 -----~~~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~----~~~~iIVv  147 (426)
T TIGR00483        84 -----KYEVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL----GINQLIVA  147 (426)
T ss_pred             -----CeEEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc----CCCeEEEE
Confidence                 24799999999643       2334445567899999999998763221  111111222222    12578999


Q ss_pred             EeCCCCCC
Q 014655          399 LNKIDLPE  406 (421)
Q Consensus       399 lNK~Dl~~  406 (421)
                      +||+|+.+
T Consensus       148 iNK~Dl~~  155 (426)
T TIGR00483       148 INKMDSVN  155 (426)
T ss_pred             EEChhccC
Confidence            99999975

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.14  E-value=1.8e-10  Score=118.15  Aligned_cols=124  Identities=24%  Similarity=0.291  Sum_probs=84.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC----CCC-----------c-cCCCC---eeeeccc---eeecCCCCCCccccccceE
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA----KPD-----------I-ADYPF---TTLMPNL---GRLDGDPTLGAEKYSSEAT  330 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~----~~~-----------i-a~~pf---TTl~p~~---g~v~~~~~~~~~~~~~~i~  330 (421)
                      ..||+||+.|+|||||+|+|++.    +..           + .+.++   ||.+|..   -.+...+   .+....++.
T Consensus        18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~---~~~~~~~Vr   94 (492)
T TIGR02836        18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI---NEGTKFKVR   94 (492)
T ss_pred             EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec---cCCCcccEE
Confidence            47899999999999999999987    433           2 56677   8888866   2222221   112235799


Q ss_pred             EecCCcccccccccCchhHH----------------------HHHhcc-cCCEEEEEe-eCCC-----CCChhhHHHHHH
Q 014655          331 LADLPGLIEGAHLGKGLGRN----------------------FLRHLR-RTRLLVHVI-DAAA-----ENPVNDYRTVKE  381 (421)
Q Consensus       331 iiDtPGlie~a~~~~gl~~~----------------------fL~~i~-radvIl~Vv-D~s~-----~~~~~~~~~l~~  381 (421)
                      ++||+|+......+.-....                      ..+.++ ++|+.|+|. |.+-     .+..+..+.+.+
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999998643322211112                      345566 899999999 8751     123334456777


Q ss_pred             HHHhcCCCCCCCCEEEEEeCCCC
Q 014655          382 ELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       382 eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      +|+.     .++|+++|+||+|-
T Consensus       175 eLk~-----~~kPfiivlN~~dp  192 (492)
T TIGR02836       175 ELKE-----LNKPFIILLNSTHP  192 (492)
T ss_pred             HHHh-----cCCCEEEEEECcCC
Confidence            8876     57999999999993

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.14  E-value=2.3e-10  Score=122.22  Aligned_cols=119  Identities=20%  Similarity=0.205  Sum_probs=76.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCc------c-C--CCCeeee-------------ccceeecCCCCCCcccc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI------A-D--YPFTTLM-------------PNLGRLDGDPTLGAEKY  325 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i------a-~--~pfTTl~-------------p~~g~v~~~~~~~~~~~  325 (421)
                      |...+.+|+++|++++|||||+++|.-..-.+      . .  ...|+.+             .....+.+        .
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~--------~   78 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY--------R   78 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee--------C
Confidence            45667899999999999999999985321111      1 0  0011111             11111221        1


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      +..+.++||||+.+.       .....+.+..+|++|+|+|++... ....+.+++.++.     .+.|+++|+||+|+.
T Consensus        79 ~~~inliDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~-----~~~PiivviNKiD~~  145 (527)
T TIGR00503        79 DCLVNLLDTPGHEDF-------SEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL-----RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CeEEEEEECCChhhH-------HHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence            357899999998543       233456778899999999998753 2333445555544     458999999999987


Q ss_pred             CC
Q 014655          406 EM  407 (421)
Q Consensus       406 ~~  407 (421)
                      ..
T Consensus       146 ~~  147 (527)
T TIGR00503       146 IR  147 (527)
T ss_pred             CC
Confidence            53

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.14  E-value=1.3e-10  Score=126.79  Aligned_cols=117  Identities=20%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCcc-----------CCCCeee----------------------eccceeecC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-----------DYPFTTL----------------------MPNLGRLDG  316 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-----------~~pfTTl----------------------~p~~g~v~~  316 (421)
                      +...+|+++|.+|+|||||+++|+.....+.           ...++|.                      +.....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            3345799999999999999999987554332           1233332                      222222221


Q ss_pred             CCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655          317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI  396 (421)
Q Consensus       317 ~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I  396 (421)
                              -..+++|+||||+.+.       .......+..+|++++|||+......++.+ ....+..+.    .++++
T Consensus       102 --------~~~~~~liDtPG~~~f-------~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~~----~~~ii  161 (632)
T PRK05506        102 --------PKRKFIVADTPGHEQY-------TRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLLG----IRHVV  161 (632)
T ss_pred             --------CCceEEEEECCChHHH-------HHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHhC----CCeEE
Confidence                    1347899999997532       223344578899999999997654333322 223343321    25788


Q ss_pred             EEEeCCCCCC
Q 014655          397 VVLNKIDLPE  406 (421)
Q Consensus       397 IVlNK~Dl~~  406 (421)
                      +|+||+|+..
T Consensus       162 vvvNK~D~~~  171 (632)
T PRK05506        162 LAVNKMDLVD  171 (632)
T ss_pred             EEEEeccccc
Confidence            9999999975

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.13  E-value=4.2e-10  Score=105.23  Aligned_cols=120  Identities=26%  Similarity=0.195  Sum_probs=81.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCe--eeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT--TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfT--Tl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|+++|.+|||||||+++|........ ++.|  +..+........       ...++.+|||+|+.+.       ...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-------~~~~~~~~Dt~gq~~~-------~~~   70 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEG-YPPTIGNLDPAKTIEPYR-------RNIKLQLWDTAGQEEY-------RSL   70 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCccc-CCCceeeeeEEEEEEeCC-------CEEEEEeecCCCHHHH-------HHH
Confidence            6899999999999999999998764431 2222  122222222111       0235899999998764       222


Q ss_pred             HHHhcccCCEEEEEeeCCC-CCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~-~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +-.+...++++++|+|... ....+..+.+..++....+  ...|+++|.||+|+.....
T Consensus        71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~  128 (219)
T COG1100          71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQS  128 (219)
T ss_pred             HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchh
Confidence            3345678999999999987 4444555666667666543  3589999999999987754

>cd01850 CDC_Septin CDC/Septin

Probab=99.12  E-value=3.6e-10  Score=111.51  Aligned_cols=123  Identities=18%  Similarity=0.213  Sum_probs=73.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccC---------CCCee-eeccceeecCCCCCCccccccceEEecCCccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------YPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~  342 (421)
                      .+|++||.+|+|||||+|+|.+.......         +..|+ +......+...      ....+++|+||||+-+...
T Consensus         5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~------g~~~~l~iiDTpGfgd~~~   78 (276)
T cd01850           5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEEN------GVKLKLTVIDTPGFGDNIN   78 (276)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEEC------CEEEEEEEEecCCcccccc
Confidence            57999999999999999999987644321         22232 22222222221      1124699999999865422


Q ss_pred             ccC---ch----hHHHHH------------hc--ccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655          343 LGK---GL----GRNFLR------------HL--RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLN  400 (421)
Q Consensus       343 ~~~---gl----~~~fL~------------~i--~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlN  400 (421)
                      ...   .+    ...|..            .+  .++|+++|++|.+.... ..+++ +.++|..      ..|+++|+|
T Consensus        79 ~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~~------~v~vi~Vin  151 (276)
T cd01850          79 NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLSK------RVNIIPVIA  151 (276)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHhc------cCCEEEEEE
Confidence            100   00    111111            11  25789999999875332 22333 3444432      489999999


Q ss_pred             CCCCCCCC
Q 014655          401 KIDLPEMY  408 (421)
Q Consensus       401 K~Dl~~~~  408 (421)
                      |+|+....
T Consensus       152 K~D~l~~~  159 (276)
T cd01850         152 KADTLTPE  159 (276)
T ss_pred             CCCcCCHH
Confidence            99997643

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>smart00053 DYNc Dynamin, GTPase

Probab=99.12  E-value=5.4e-10  Score=108.18  Aligned_cols=77  Identities=22%  Similarity=0.221  Sum_probs=50.7

Q ss_pred             cceEEecCCccccccccc------CchhHHHHHhcc-cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655          327 SEATLADLPGLIEGAHLG------KGLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL  399 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~------~gl~~~fL~~i~-radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVl  399 (421)
                      ..++++||||+...+..+      ..+......+++ ..+++++|+|+.......+...+.+++..     ..+++++|+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-----~~~rti~Vi  199 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-----QGERTIGVI  199 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-----cCCcEEEEE
Confidence            359999999997543211      122333556676 45699999998764333343344455544     468999999


Q ss_pred             eCCCCCCCC
Q 014655          400 NKIDLPEMY  408 (421)
Q Consensus       400 NK~Dl~~~~  408 (421)
                      ||+|..+..
T Consensus       200 TK~D~~~~~  208 (240)
T smart00053      200 TKLDLMDEG  208 (240)
T ss_pred             ECCCCCCcc
Confidence            999987643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.10  E-value=6.3e-10  Score=120.33  Aligned_cols=120  Identities=20%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC--CCc---cc--c---ccceEEecCCccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--LGA---EK--Y---SSEATLADLPGLIEGAH  342 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~--~~~---~~--~---~~~i~iiDtPGlie~a~  342 (421)
                      +-|+++|++|+|||||+++|++...........|.+.....+.....  ...   ..  .   -..++++||||+.+.. 
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~-   85 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT-   85 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH-
Confidence            57999999999999999999876432211111221111000100000  000   00  0   0137999999986531 


Q ss_pred             ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                            ....+.+..+|++++|+|+++....+.++.+ ..+..     .+.|+++|+||+|+.
T Consensus        86 ------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~~~~-----~~vpiIvviNK~D~~  136 (586)
T PRK04004         86 ------NLRKRGGALADIAILVVDINEGFQPQTIEAI-NILKR-----RKTPFVVAANKIDRI  136 (586)
T ss_pred             ------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcCCc
Confidence                  1122445779999999999875434444433 33333     468999999999986

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.10  E-value=4.6e-10  Score=121.98  Aligned_cols=114  Identities=20%  Similarity=0.177  Sum_probs=76.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      -|+++|.+++|||||+++|++.+...   ....+.|.+.....+....       +..+.++||||+.+       +...
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-------g~~i~~IDtPGhe~-------fi~~   67 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-------GRVLGFIDVPGHEK-------FLSN   67 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-------CcEEEEEECCCHHH-------HHHH
Confidence            37899999999999999999754321   2234566655444332211       23589999999743       2334


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~  407 (421)
                      .+..+..+|++++|||+......++.+. ...+..     .+.| ++||+||+|+.+.
T Consensus        68 m~~g~~~~D~~lLVVda~eg~~~qT~eh-l~il~~-----lgi~~iIVVlNKiDlv~~  119 (614)
T PRK10512         68 MLAGVGGIDHALLVVACDDGVMAQTREH-LAILQL-----TGNPMLTVALTKADRVDE  119 (614)
T ss_pred             HHHHhhcCCEEEEEEECCCCCcHHHHHH-HHHHHH-----cCCCeEEEEEECCccCCH
Confidence            4566788999999999987544444333 344544     2455 5799999999754

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=2e-10  Score=107.61  Aligned_cols=119  Identities=22%  Similarity=0.202  Sum_probs=87.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCccCC-----CCeeeeccceeecCCCCCCccccccceEEecCCccccccc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADY-----PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~-----pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~  342 (421)
                      ++.-+++|.++|.+++|||-||.+++..+..+...     .|.|...   .++..        ....+||||.|..... 
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~---~vd~k--------~vkaqIWDTAGQERyr-   77 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTV---NVDGK--------TVKAQIWDTAGQERYR-   77 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeece---eecCc--------EEEEeeecccchhhhc-
Confidence            45667889999999999999999999887554322     2222221   12211        2368999999975431 


Q ss_pred             ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                         .+   .-.+.+.|-..++|+|++...+++....|+.||+....  .+.++++|.||+||..
T Consensus        78 ---Ai---tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~  133 (222)
T KOG0087|consen   78 ---AI---TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNH  133 (222)
T ss_pred             ---cc---cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhh
Confidence               11   12345778899999999998888998999999988654  5789999999999976

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=1.3e-10  Score=106.84  Aligned_cols=122  Identities=27%  Similarity=0.426  Sum_probs=84.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce----eecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g----~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      .+|.++|+-||||||++..|.-.+.      +|| .|.+|    .+++.        +.++++||+-|...       ++
T Consensus        18 ~~IlmlGLD~AGKTTILykLk~~E~------vtt-vPTiGfnVE~v~yk--------n~~f~vWDvGGq~k-------~R   75 (181)
T KOG0070|consen   18 MRILMVGLDAAGKTTILYKLKLGEI------VTT-VPTIGFNVETVEYK--------NISFTVWDVGGQEK-------LR   75 (181)
T ss_pred             EEEEEEeccCCCceeeeEeeccCCc------ccC-CCccccceeEEEEc--------ceEEEEEecCCCcc-------cc
Confidence            5899999999999999999976653      233 34333    34433        34799999999743       33


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      ..|..+...++.+|||||.++.+..+   ...++|...-  +.+...|+++.+||.|++.+-...+.-+.+++
T Consensus        76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~---eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l  145 (181)
T KOG0070|consen   76 PLWKHYFQNTQGLIFVVDSSDRERIE---EAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGL  145 (181)
T ss_pred             cchhhhccCCcEEEEEEeCCcHHHHH---HHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhh
Confidence            44556678999999999999754433   2334443321  23457999999999999988765555455544

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.09  E-value=4.9e-10  Score=121.49  Aligned_cols=122  Identities=23%  Similarity=0.256  Sum_probs=77.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  334 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt  334 (421)
                      +.+.+|+++|..++|||||+.+|....-.+..               .-+.|.......+.+...   ......+.+|||
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~---dg~~~~lnLiDT   81 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAK---DGETYILNLIDT   81 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEcc---CCCcEEEEEEEC
Confidence            34568999999999999999999764322211               012222222222211100   011347899999


Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ||+.+.       .....+.++.||++|+|||+++....++...+.....      .+.|+++|+||+|+..+
T Consensus        82 PGh~dF-------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a  141 (600)
T PRK05433         82 PGHVDF-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAA  141 (600)
T ss_pred             CCcHHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcc
Confidence            999764       2234566788999999999998655555544443332      35799999999999754

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.09  E-value=6.5e-10  Score=106.44  Aligned_cols=69  Identities=25%  Similarity=0.146  Sum_probs=48.6

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcc--cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~--radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++++||||+.+.       ....++.+.  .+|++++|+|+..+....+ ..+..++..     .++|+++|+||+|+
T Consensus        84 ~~i~liDtpG~~~~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~-----~~ip~ivvvNK~D~  150 (224)
T cd04165          84 KLVTFIDLAGHERY-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA-----LNIPVFVVVTKIDL  150 (224)
T ss_pred             cEEEEEECCCcHHH-------HHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCEEEEEECccc
Confidence            46899999997543       223344443  6899999999987654444 334455554     46899999999998


Q ss_pred             CCCC
Q 014655          405 PEMY  408 (421)
Q Consensus       405 ~~~~  408 (421)
                      ....
T Consensus       151 ~~~~  154 (224)
T cd04165         151 APAN  154 (224)
T ss_pred             cCHH
Confidence            7654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.08  E-value=1.7e-10  Score=106.12  Aligned_cols=120  Identities=23%  Similarity=0.269  Sum_probs=86.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-----cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  344 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-----a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~  344 (421)
                      +.+.+|.++|.+++|||||+|.+.+.+-..     -...|-|.+..   ++ +       -...++||||.|.....+  
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~---Vd-~-------~~vtlQiWDTAGQERFqs--   73 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQ---VD-D-------RSVTLQIWDTAGQERFQS--   73 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEE---Ec-C-------eEEEEEEEecccHHHhhh--
Confidence            455789999999999999999998765211     11224444322   22 1       124689999999876533  


Q ss_pred             CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-C-CCCCCEEEEEeCCCCCCC
Q 014655          345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-D-YLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~-l~~kP~IIVlNK~Dl~~~  407 (421)
                        |+..|   .+.||.+++|+|+..+.+++.++.|++|+-.+.. . ...-|+||+.||+|+.+.
T Consensus        74 --Lg~aF---YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~  133 (210)
T KOG0394|consen   74 --LGVAF---YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG  133 (210)
T ss_pred             --cccce---ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence              33334   6789999999999999999999999998766542 2 235789999999999774

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.08  E-value=4.4e-10  Score=116.46  Aligned_cols=124  Identities=20%  Similarity=0.179  Sum_probs=73.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeec--------------CCCCCCcc----ccccceEE
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLD--------------GDPTLGAE----KYSSEATL  331 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~--------------~~~~~~~~----~~~~~i~i  331 (421)
                      .+|+++|.+++|||||+++|++.....   .-....|.........              ........    .....+++
T Consensus         5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l   84 (406)
T TIGR03680         5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF   84 (406)
T ss_pred             EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence            479999999999999999998643211   0011222221111100              00000000    01246999


Q ss_pred             ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +||||+.+.       ...+...+..+|++++|||++++. ..+..+ ....+..+.    .+|+++|+||+|+.+.+
T Consensus        85 iDtPGh~~f-------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~~g----i~~iIVvvNK~Dl~~~~  150 (406)
T TIGR03680        85 VDAPGHETL-------MATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEIIG----IKNIVIVQNKIDLVSKE  150 (406)
T ss_pred             EECCCHHHH-------HHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHHcC----CCeEEEEEEccccCCHH
Confidence            999997543       345566677899999999998754 223333 223444321    25789999999998643

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.08  E-value=5.4e-10  Score=118.06  Aligned_cols=118  Identities=22%  Similarity=0.242  Sum_probs=73.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccC-----------CCCe----------------------eeeccceeecC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-----------YPFT----------------------TLMPNLGRLDG  316 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-----------~pfT----------------------Tl~p~~g~v~~  316 (421)
                      +...+|+++|.+++|||||+++|....-.+..           ..++                      |++.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            55579999999999999999999755322211           0122                      22322222221


Q ss_pred             CCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655          317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI  396 (421)
Q Consensus       317 ~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I  396 (421)
                      .        ..++.|+||||+.+       +.......+..+|++++|||+.......+.+ .+..+..+.    .+|+|
T Consensus       105 ~--------~~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~l~~~lg----~~~iI  164 (474)
T PRK05124        105 E--------KRKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARKGVLDQTRR-HSFIATLLG----IKHLV  164 (474)
T ss_pred             C--------CcEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCccccchH-HHHHHHHhC----CCceE
Confidence            1        24799999999643       2333445568899999999998654332222 222333322    25789


Q ss_pred             EEEeCCCCCCC
Q 014655          397 VVLNKIDLPEM  407 (421)
Q Consensus       397 IVlNK~Dl~~~  407 (421)
                      +|+||+|+...
T Consensus       165 vvvNKiD~~~~  175 (474)
T PRK05124        165 VAVNKMDLVDY  175 (474)
T ss_pred             EEEEeeccccc
Confidence            99999999753

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.06  E-value=9.4e-10  Score=98.35  Aligned_cols=117  Identities=20%  Similarity=0.221  Sum_probs=75.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|.|||..+||||||+++|.+.+...   .- |..     +.+         .  =.++||||-.   -++..+.++.+
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~~---~K-Tq~-----i~~---------~--~~~IDTPGEy---iE~~~~y~aLi   58 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIRY---KK-TQA-----IEY---------Y--DNTIDTPGEY---IENPRFYHALI   58 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCCc---Cc-cce-----eEe---------c--ccEEECChhh---eeCHHHHHHHH
Confidence            478999999999999999999865321   11 111     111         1  1459999942   12455555666


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch----HHHHhCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS----SSRQGIGFNP  421 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~----~~l~~lGl~e  421 (421)
                      .....||+|++|.|++.+...-.-.    ..     ....+|+|-|+||+|+...++..    +.|+..|+++
T Consensus        59 ~ta~dad~V~ll~dat~~~~~~pP~----fa-----~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~  122 (143)
T PF10662_consen   59 VTAQDADVVLLLQDATEPRSVFPPG----FA-----SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKE  122 (143)
T ss_pred             HHHhhCCEEEEEecCCCCCccCCch----hh-----cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCC
Confidence            6678999999999998753211111    11     12468999999999999433332    4566666653

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.05  E-value=7.8e-10  Score=114.69  Aligned_cols=114  Identities=23%  Similarity=0.235  Sum_probs=71.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccC-------------------C--------------CCeeeeccceeecCCCCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------Y--------------PFTTLMPNLGRLDGDPTL  320 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~-------------------~--------------pfTTl~p~~g~v~~~~~~  320 (421)
                      +|+++|++++|||||+.+|....-.+..                   +              -+.|++.....+...   
T Consensus         2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~---   78 (406)
T TIGR02034         2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD---   78 (406)
T ss_pred             eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence            6899999999999999999644322110                   1              111233332222221   


Q ss_pred             CccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655          321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN  400 (421)
Q Consensus       321 ~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlN  400 (421)
                           ..++.++||||+.+.       .......+..+|++++|||+......++.+ .+..+..+.    .+++++|+|
T Consensus        79 -----~~~~~liDtPGh~~f-------~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~~~~~~~~----~~~iivviN  141 (406)
T TIGR02034        79 -----KRKFIVADTPGHEQY-------TRNMATGASTADLAVLLVDARKGVLEQTRR-HSYIASLLG----IRHVVLAVN  141 (406)
T ss_pred             -----CeEEEEEeCCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCccccHH-HHHHHHHcC----CCcEEEEEE
Confidence                 347999999997542       223345678899999999998754333333 333444322    246888999


Q ss_pred             CCCCCCC
Q 014655          401 KIDLPEM  407 (421)
Q Consensus       401 K~Dl~~~  407 (421)
                      |+|+...
T Consensus       142 K~D~~~~  148 (406)
T TIGR02034       142 KMDLVDY  148 (406)
T ss_pred             ecccccc
Confidence            9999753

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=3.8e-10  Score=113.31  Aligned_cols=138  Identities=22%  Similarity=0.287  Sum_probs=95.3

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCC---CccCCCCeee------eccceeecCCCCCCc-----c------------
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKP---DIADYPFTTL------MPNLGRLDGDPTLGA-----E------------  323 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~---~ia~~pfTTl------~p~~g~v~~~~~~~~-----~------------  323 (421)
                      ..-+=|.++|..+.||||+|+.|+..+.   .+.+.|.|..      -+..+++.+.....+     .            
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            3345689999999999999999998762   3455554432      222333333211110     0            


Q ss_pred             --------ccccceEEecCCcccccccccCchhHHHHH----hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCC
Q 014655          324 --------KYSSEATLADLPGLIEGAHLGKGLGRNFLR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL  391 (421)
Q Consensus       324 --------~~~~~i~iiDtPGlie~a~~~~gl~~~fL~----~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~  391 (421)
                              ..-.+++|+||||+.++..+....+..|-.    .+++||.|++++|+..-+...+++.+...|+-     .
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-----~  210 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-----H  210 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-----C
Confidence                    011359999999999998776555555533    25899999999999877766677777777765     3


Q ss_pred             CCCEEEEEeCCCCCCCCCchH
Q 014655          392 ERPFIVVLNKIDLPEMYDDSS  412 (421)
Q Consensus       392 ~kP~IIVlNK~Dl~~~~e~~~  412 (421)
                      +-.+-||+||+|.++.++.+.
T Consensus       211 EdkiRVVLNKADqVdtqqLmR  231 (532)
T KOG1954|consen  211 EDKIRVVLNKADQVDTQQLMR  231 (532)
T ss_pred             cceeEEEeccccccCHHHHHH
Confidence            456889999999999887653

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=4.2e-10  Score=104.14  Aligned_cols=115  Identities=22%  Similarity=0.151  Sum_probs=79.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc--cC---CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI--AD---YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~---~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      .+|.|+|..+||||||+-++...+...  .+   -.|-|...     ..+.      ...++.||||.|.....    ++
T Consensus         6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv-----~~~~------~~ikfeIWDTAGQERy~----sl   70 (200)
T KOG0092|consen    6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTV-----TVDD------NTIKFEIWDTAGQERYH----SL   70 (200)
T ss_pred             EEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEE-----EeCC------cEEEEEEEEcCCccccc----cc
Confidence            589999999999999999987654211  11   12222211     1111      02468899999987642    23


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...   +.+.|++.|+|+|+++.+++...+.|..+|+.-.+  .+.-+.+|.||+||...
T Consensus        71 apM---YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~  125 (200)
T KOG0092|consen   71 APM---YYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLER  125 (200)
T ss_pred             ccc---eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhc
Confidence            322   35789999999999999888888888888887433  23445669999999873

>PRK13351 elongation factor G; Reviewed

Probab=99.05  E-value=9.1e-10  Score=121.22  Aligned_cols=116  Identities=24%  Similarity=0.226  Sum_probs=76.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc---cCC---------------CCeeeeccceeecCCCCCCccccccceEEe
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLA  332 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~i~ii  332 (421)
                      .+.+|+++|..++|||||+++|......+   ...               -..|+......+..        ....+.++
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--------~~~~i~li   78 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--------DNHRINLI   78 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--------CCEEEEEE
Confidence            45689999999999999999997532111   000               01122222222221        13579999


Q ss_pred             cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ||||+.+.       .......++.+|++++|+|++........ .++..+..     .+.|+++|+||+|+...
T Consensus        79 DtPG~~df-------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~-----~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         79 DTPGHIDF-------TGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR-----YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             ECCCcHHH-------HHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh-----cCCCEEEEEECCCCCCC
Confidence            99998653       22334567889999999999876554443 34445544     36899999999999865

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.04  E-value=6e-10  Score=105.48  Aligned_cols=126  Identities=19%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccC--CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~--~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +|.|+|.+++||||++|.|++.+.....  ....|...........        +..++|+||||+.+....+..+....
T Consensus         2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~--------g~~v~VIDTPGl~d~~~~~~~~~~~i   73 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD--------GRQVTVIDTPGLFDSDGSDEEIIREI   73 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET--------TEEEEEEE--SSEETTEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec--------ceEEEEEeCCCCCCCcccHHHHHHHH
Confidence            6899999999999999999998764322  2223333333222221        35799999999977644333333333


Q ss_pred             HH----hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~----~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+    .....+++|||+++. ..+.++...+....+.+.+.. -+.++||+|..|......
T Consensus        74 ~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~  133 (212)
T PF04548_consen   74 KRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDS  133 (212)
T ss_dssp             HHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTT
T ss_pred             HHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH-HhHhhHHhhhcccccccc
Confidence            33    234579999999988 455566555555555565433 356899999999877654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01882 BMS1 Bms1

Probab=99.04  E-value=1e-09  Score=105.02  Aligned_cols=107  Identities=22%  Similarity=0.275  Sum_probs=70.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC--ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~--ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .-|+++|.+|+|||||+++|......  +....++.     -.+..        ...++.++||||.+          ..
T Consensus        40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-----~i~~~--------~~~~i~~vDtPg~~----------~~   96 (225)
T cd01882          40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-----TVVTG--------KKRRLTFIECPNDI----------NA   96 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-----EEEec--------CCceEEEEeCCchH----------HH
Confidence            45899999999999999999875211  12111110     01111        13578999999854          23


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCE-EEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~-IIVlNK~Dl~~~~  408 (421)
                      .++.++.+|++++|+|++......+ ..++..+..     .+.|. ++|+||+|+....
T Consensus        97 ~l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~-----~g~p~vi~VvnK~D~~~~~  149 (225)
T cd01882          97 MIDIAKVADLVLLLIDASFGFEMET-FEFLNILQV-----HGFPRVMGVLTHLDLFKKN  149 (225)
T ss_pred             HHHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH-----cCCCeEEEEEeccccCCcH
Confidence            4566788999999999986554444 345556654     24675 4599999997543

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.04  E-value=5e-10  Score=101.03  Aligned_cols=119  Identities=22%  Similarity=0.194  Sum_probs=84.7

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeee--ccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM--PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~--p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      ...+|.++|..++||||||-+++.....  +..-+|+-  -..-.+..+.      ...++.||||+|.....    .|.
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg------~~~KlaiWDTAGqErFR----tLT   77 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDG------KRLKLAIWDTAGQERFR----TLT   77 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcC------ceEEEEEEeccchHhhh----ccC
Confidence            3468999999999999999999875422  22233331  1122222221      13479999999976542    222


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      .   .+.+.|..+|+|+|++..+++..++.|.+||..|..+ .+.-.++|.||+|..
T Consensus        78 p---SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDke  130 (209)
T KOG0080|consen   78 P---SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKE  130 (209)
T ss_pred             H---hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccch
Confidence            2   3467889999999999999999999999999999753 244568899999975

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=3.4e-10  Score=102.54  Aligned_cols=119  Identities=25%  Similarity=0.353  Sum_probs=86.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +...++.++|.-|||||||++.|.+.+..+   -..|++|....+....        -+++..|.-|+...       .+
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q---hvPTlHPTSE~l~Ig~--------m~ftt~DLGGH~qA-------rr   79 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELSIGG--------MTFTTFDLGGHLQA-------RR   79 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccc---cCCCcCCChHHheecC--------ceEEEEccccHHHH-------HH
Confidence            445689999999999999999998876543   2336677665555442        37899999998653       55


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHh--cCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM--YNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~--~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+.+++..+|.++|+||+.+.+...+.+   .+++.  ..+.+...|++|..||+|.+.+..
T Consensus        80 ~wkdyf~~v~~iv~lvda~d~er~~es~---~eld~ll~~e~la~vp~lilgnKId~p~a~s  138 (193)
T KOG0077|consen   80 VWKDYFPQVDAIVYLVDAYDQERFAESK---KELDALLSDESLATVPFLILGNKIDIPYAAS  138 (193)
T ss_pred             HHHHHHhhhceeEeeeehhhHHHhHHHH---HHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence            6778899999999999998754332222   22221  123346799999999999988763

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.01  E-value=6.7e-10  Score=98.33  Aligned_cols=124  Identities=24%  Similarity=0.315  Sum_probs=84.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cC-CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~-~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|+++|.-||||||||..|.+.++.- .+ .-|.|.     .+.++.       ...+.+||+-|.       +++.-.
T Consensus        18 irilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k-----~v~~~g-------~f~LnvwDiGGq-------r~IRpy   78 (185)
T KOG0074|consen   18 IRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTK-----KVEYDG-------TFHLNVWDIGGQ-------RGIRPY   78 (185)
T ss_pred             EEEEEEecCCCcchhHHHHHccCChhhccccCCcceE-----EEeecC-------cEEEEEEecCCc-------cccchh
Confidence            579999999999999999999988653 22 223332     233332       136899999994       566677


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEMYDDSSSRQGIG  418 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG  418 (421)
                      |..+.+..|.++||||.++...+++.   -+++..+.  ..+...|++|..||.|+..+....+....++
T Consensus        79 WsNYyenvd~lIyVIDS~D~krfeE~---~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~kln  145 (185)
T KOG0074|consen   79 WSNYYENVDGLIYVIDSTDEKRFEEI---SEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLN  145 (185)
T ss_pred             hhhhhhccceEEEEEeCCchHhHHHH---HHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcc
Confidence            88889999999999997764433332   22222211  2346799999999999987655444444443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.3e-09  Score=101.13  Aligned_cols=122  Identities=19%  Similarity=0.139  Sum_probs=84.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|.++|.-++||||||+++.-.... .+|.-|- ++-..-.+.+..      ...++++|||+|....       ....
T Consensus        23 ~KlVflGdqsVGKTslItRf~yd~fd-~~YqATIGiDFlskt~~l~d------~~vrLQlWDTAGQERF-------rsli   88 (221)
T KOG0094|consen   23 YKLVFLGDQSVGKTSLITRFMYDKFD-NTYQATIGIDFLSKTMYLED------RTVRLQLWDTAGQERF-------RSLI   88 (221)
T ss_pred             EEEEEEccCccchHHHHHHHHHhhhc-ccccceeeeEEEEEEEEEcC------cEEEEEEEecccHHHH-------hhhh
Confidence            68999999999999999998754321 1222111 111111222221      1357999999997543       1122


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      -.+++.+.++|.|+|+++..++++...|.+.+...+.. .+.-+++|.||.||.+..+
T Consensus        89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs-~~viI~LVGnKtDL~dkrq  145 (221)
T KOG0094|consen   89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS-DDVIIFLVGNKTDLSDKRQ  145 (221)
T ss_pred             hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCC-CceEEEEEcccccccchhh
Confidence            35688999999999999999999988888888776532 1355788999999998654

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=1.1e-09  Score=101.00  Aligned_cols=122  Identities=18%  Similarity=0.116  Sum_probs=84.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..++.++|..++|||.||.+++.... +..+. .|+-...|.-.    +..+....++.||||.|.....    .+.+  
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF-~~~hd-~TiGvefg~r~----~~id~k~IKlqiwDtaGqe~fr----sv~~--   73 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRF-QPVHD-LTIGVEFGARM----VTIDGKQIKLQIWDTAGQESFR----SVTR--   73 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCc-ccccc-ceeeeeeceeE----EEEcCceEEEEEEecCCcHHHH----HHHH--
Confidence            36889999999999999999997652 21222 33322222111    1111223479999999976542    2223  


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                       .+.+.|-..|+|+|++..+++..+..|+.+++.+..  .+..++++.||+||...+
T Consensus        74 -syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR  127 (216)
T KOG0098|consen   74 -SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARR  127 (216)
T ss_pred             -HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEEEEcchhhhhccc
Confidence             345667788999999999998888888888887642  456788999999997654

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.00  E-value=1.7e-09  Score=96.45  Aligned_cols=122  Identities=21%  Similarity=0.144  Sum_probs=86.3

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      ..+++..|+|.|++|||||+-++.... ....|..|+ .+-.+.+++...      ...++.||||+|....       .
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G------~~VkLqIwDtAGqErF-------r   71 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDING------DRVKLQIWDTAGQERF-------R   71 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCC------cEEEEEEeecccHHHH-------H
Confidence            345677889999999999999997652 234454333 244444554432      2457999999996432       1


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...-.+.+..+++++|+|+++.+++.....|+++++.-.   ...|-++|.||.|+++..
T Consensus        72 titstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc---dsv~~vLVGNK~d~~~Rr  128 (198)
T KOG0079|consen   72 TITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC---DSVPKVLVGNKNDDPERR  128 (198)
T ss_pred             HHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC---ccccceecccCCCCccce
Confidence            122234577899999999999888888888888887644   357889999999998653

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=1.7e-09  Score=96.53  Aligned_cols=125  Identities=18%  Similarity=0.121  Sum_probs=86.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeec--cceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  345 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p--~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~  345 (421)
                      ..+.+++|.+||..++|||.|+++++..-..  +-...|+..  -+.+++...      -..++.||||.|....     
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfp--pgqgatigvdfmiktvev~g------ekiklqiwdtagqerf-----   69 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFP--PGQGATIGVDFMIKTVEVNG------EKIKLQIWDTAGQERF-----   69 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCC--CCCCceeeeeEEEEEEEECC------eEEEEEEeeccchHHH-----
Confidence            3567889999999999999999999865321  122233311  111222211      1237899999997543     


Q ss_pred             chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                        ......+.+.|+++++|+|++...++.-+-.|+.|++.|..  .+.--|+|.||+|+.+..+
T Consensus        70 --rsitqsyyrsahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~drre  129 (213)
T KOG0095|consen   70 --RSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRRE  129 (213)
T ss_pred             --HHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhh
Confidence              22234556779999999999998778878888999999864  2344588999999987644

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=1.5e-09  Score=96.69  Aligned_cols=136  Identities=14%  Similarity=0.105  Sum_probs=92.1

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      .....++.++|...+|||||+.+..+....++-+...-++-..-++....      ...+++||||.|...       +.
T Consensus        18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~------kRiklQiwDTagqEr-------yr   84 (193)
T KOG0093|consen   18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD------KRIKLQIWDTAGQER-------YR   84 (193)
T ss_pred             ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc------cEEEEEEEecccchh-------hh
Confidence            44556999999999999999999987653332111001111111111110      124789999999643       23


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC-----chHHHHhCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD-----DSSSRQGIGF  419 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e-----~~~~l~~lGl  419 (421)
                      ...-.+++.++.+++++|+++.++....+.+...++.|..  .+.|+|+|.||||+.++.-     -....+++|+
T Consensus        85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf  158 (193)
T KOG0093|consen   85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVILVGNKCDMDSERVISHERGRQLADQLGF  158 (193)
T ss_pred             HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec--cCceEEEEecccCCccceeeeHHHHHHHHHHhCh
Confidence            3334567899999999999998888888888888888854  6799999999999976542     1234456665

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.00  E-value=1.6e-09  Score=116.67  Aligned_cols=129  Identities=16%  Similarity=0.181  Sum_probs=81.1

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCC-CCeeeeccc-eeecCCCCCCccccccceEEecCCcccccccc-
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADY-PFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-  343 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~-pfTTl~p~~-g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-  343 (421)
                      .|....+|+|||.+|+|||||+|+|++.+.. +..+ +.||..... +.+.          +..+.|+||||+.+.... 
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id----------G~~L~VIDTPGL~dt~~dq  183 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ----------GVKIRVIDTPGLKSSASDQ  183 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC----------CceEEEEECCCCCccccch
Confidence            3555568999999999999999999998754 3443 455543221 2221          247999999999986322 


Q ss_pred             --cCchhHHHHHhcc--cCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          344 --GKGLGRNFLRHLR--RTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       344 --~~gl~~~fL~~i~--radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        +..+.....+.+.  .+|++|||+.+..... .++...+...-+.+... .-..+|||+|..|..++
T Consensus       184 ~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~-Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       184 SKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS-IWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH-hHcCEEEEEeCCccCCC
Confidence              1223333333333  4799999988753322 23433343333344433 34668999999998864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.98  E-value=1.9e-09  Score=111.99  Aligned_cols=125  Identities=22%  Similarity=0.212  Sum_probs=75.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCC--------------CCCCc----cccccceEE
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGD--------------PTLGA----EKYSSEATL  331 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~--------------~~~~~----~~~~~~i~i  331 (421)
                      .+|+++|..++|||||+.+|++.....   ....+.|+..........              .....    ..+...+.+
T Consensus        10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l   89 (411)
T PRK04000         10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF   89 (411)
T ss_pred             EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence            579999999999999999997642111   112234444332211110              00000    001247899


Q ss_pred             ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +||||..+       +...++..+..+|++++|+|++.+.+ .+..+ .+..+..+.    .+|+++|+||+|+.+..+
T Consensus        90 iDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~~----i~~iiVVlNK~Dl~~~~~  156 (411)
T PRK04000         90 VDAPGHET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDIIG----IKNIVIVQNKIDLVSKER  156 (411)
T ss_pred             EECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHcC----CCcEEEEEEeeccccchh
Confidence            99999643       34456677778899999999997642 23333 333444322    247899999999986543

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=1.7e-09  Score=101.80  Aligned_cols=119  Identities=28%  Similarity=0.336  Sum_probs=83.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      ..|.|+|+.++|||+|+-.|.....   .-.+|...|+.+.+...        +..++++|.||+..       +.+.++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~---~~TvtSiepn~a~~r~g--------s~~~~LVD~PGH~r-------lR~kl~  100 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSH---RGTVTSIEPNEATYRLG--------SENVTLVDLPGHSR-------LRRKLL  100 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCc---cCeeeeeccceeeEeec--------CcceEEEeCCCcHH-------HHHHHH
Confidence            4799999999999999999976531   22356678888887654        23579999999754       455555


Q ss_pred             Hhcc---cCCEEEEEeeCCCC--CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          353 RHLR---RTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       353 ~~i~---radvIl~VvD~s~~--~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +.+.   ++..||||||+..-  +..+..+.+...|..-.......|++|++||.|+..+..
T Consensus       101 e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt  162 (238)
T KOG0090|consen  101 EYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT  162 (238)
T ss_pred             HHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence            5554   89999999998652  223333445555544322234678999999999987653

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.96  E-value=1.8e-09  Score=104.10  Aligned_cols=126  Identities=19%  Similarity=0.186  Sum_probs=77.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      +|.|+|+.++||||+.+.+...- |....+...|.++..-.+....       .-.+.+||.||.......  .+...--
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-------~~~l~iwD~pGq~~~~~~--~~~~~~~   71 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-------FLPLNIWDCPGQDDFMEN--YFNSQRE   71 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-------SCEEEEEEE-SSCSTTHT--THTCCHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-------CcEEEEEEcCCccccccc--cccccHH
Confidence            68999999999999999998654 3334555666666655554322       137899999998754221  0001111


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHH---HHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEE---LRMYNPDYLERPFIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~e---L~~~~~~l~~kP~IIVlNK~Dl~~~~e~~  411 (421)
                      .-.+.++++|||+|+...+..+++..+.+.   +..+++   +..+-|.+.|+|+..++.+.
T Consensus        72 ~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp---~~~v~vfiHK~D~l~~~~r~  130 (232)
T PF04670_consen   72 EIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP---NIKVFVFIHKMDLLSEDERE  130 (232)
T ss_dssp             HHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST---T-EEEEEEE-CCCS-HHHHH
T ss_pred             HHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeecccCCHHHHH
Confidence            224789999999999866666666555544   445554   56789999999998765443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.95  E-value=7.6e-09  Score=95.28  Aligned_cols=119  Identities=19%  Similarity=0.185  Sum_probs=85.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-c------cCCCC---eeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-I------ADYPF---TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  341 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-i------a~~pf---TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a  341 (421)
                      ..+|+++|..+|||||++.+++...+- +      ..+..   ||.-...|.+.++.       ...+.+.||||+... 
T Consensus        10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-------~~~v~LfgtPGq~RF-   81 (187)
T COG2229          10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-------DTGVHLFGTPGQERF-   81 (187)
T ss_pred             ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-------cceEEEecCCCcHHH-
Confidence            368999999999999999999987631 1      12333   67777777776542       247999999998643 


Q ss_pred             cccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          342 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       342 ~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                            ...+--..+.+..+++++|.+.+... ..+.+.+.+....    ..|++|++||.|+.++..
T Consensus        82 ------~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~----~ip~vVa~NK~DL~~a~p  138 (187)
T COG2229          82 ------KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN----PIPVVVAINKQDLFDALP  138 (187)
T ss_pred             ------HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc----CCCEEEEeeccccCCCCC
Confidence                  22222334679999999999987766 3344555665532    289999999999987753

>PTZ00416 elongation factor 2; Provisional

Probab=98.94  E-value=4.9e-09  Score=117.76  Aligned_cols=123  Identities=20%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeee---------------eccceeecCCCC--CCccccccceEE
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTL---------------MPNLGRLDGDPT--LGAEKYSSEATL  331 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl---------------~p~~g~v~~~~~--~~~~~~~~~i~i  331 (421)
                      ..+.+|+++|+.++|||||+++|....-.+ .....+|.               ......+.+...  ......+..+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            445689999999999999999998643322 11112221               111111111100  000001246899


Q ss_pred             ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      +||||+.+.       .......+..+|++|+|+|+......++ +.++..+..     .++|+++|+||+|+.
T Consensus        97 iDtPG~~~f-------~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~-----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDF-------SSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ-----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhH-------HHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH-----cCCCEEEEEEChhhh
Confidence            999998764       2234566788999999999987654444 345555554     358999999999997

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.93  E-value=5.5e-09  Score=109.68  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=72.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLG  321 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~~  321 (421)
                      ..|+++|..++|||||+.+|+..--.+.                               ...+.|.+.....+...    
T Consensus         8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~----   83 (446)
T PTZ00141          8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP----   83 (446)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC----
Confidence            4799999999999999999875211110                               01233444333333221    


Q ss_pred             ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC------hhhHHHHHHHHHhcCCCCCCCC-
Q 014655          322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP------VNDYRTVKEELRMYNPDYLERP-  394 (421)
Q Consensus       322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~------~~~~~~l~~eL~~~~~~l~~kP-  394 (421)
                          +..+.|+||||+.+.       .......+..+|++++|||+.....      ..+.+..+..+..     ...| 
T Consensus        84 ----~~~i~lIDtPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-----~gi~~  147 (446)
T PTZ00141         84 ----KYYFTIIDAPGHRDF-------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-----LGVKQ  147 (446)
T ss_pred             ----CeEEEEEECCChHHH-------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-----cCCCe
Confidence                347999999997543       3344566788999999999987532      1233334444544     3555 


Q ss_pred             EEEEEeCCCCC
Q 014655          395 FIVVLNKIDLP  405 (421)
Q Consensus       395 ~IIVlNK~Dl~  405 (421)
                      +|+|+||||..
T Consensus       148 iiv~vNKmD~~  158 (446)
T PTZ00141        148 MIVCINKMDDK  158 (446)
T ss_pred             EEEEEEccccc
Confidence            67899999954

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.89  E-value=4.5e-09  Score=116.37  Aligned_cols=121  Identities=20%  Similarity=0.180  Sum_probs=75.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc----------cCC------CCeeeeccceeecCCCCCCccccccceEEec
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------a~~------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      ..+.+|+++|..++|||||+++|....-.+          .++      ...|+..........    ..+....+.++|
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~----~~~~~~~i~liD   92 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE----YEGNEYLINLID   92 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe----ecCCceEEEEEe
Confidence            345799999999999999999996431111          011      122322221111000    001235799999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      |||+.+.       .......+..+|++|+|+|+......++. .++..+..     .+.|.++|+||+|....
T Consensus        93 TPG~~~f-------~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~-----~~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        93 TPGHVDF-------GGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK-----ENVKPVLFINKVDRLIN  153 (720)
T ss_pred             CCCcccc-------HHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH-----cCCCEEEEEEChhcccc
Confidence            9998763       22345677899999999999875433333 33333333     35788999999998753

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.89  E-value=5.2e-09  Score=117.69  Aligned_cols=123  Identities=20%  Similarity=0.116  Sum_probs=77.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCcc-CCCCe---------------eeeccceeecCCCCC--------Ccccc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-DYPFT---------------TLMPNLGRLDGDPTL--------GAEKY  325 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-~~pfT---------------Tl~p~~g~v~~~~~~--------~~~~~  325 (421)
                      ..+.+|+++|+.++|||||+.+|....-.+. ....+               |.......+.+....        .....
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            3466899999999999999999975443221 11111               112111111111000        00001


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      +..+.++||||+.+.       .......+..+|..|+|||+..+....+.. ++..+..     .++|+++++||+|+.
T Consensus        97 ~~~inliDtPGh~dF-------~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~-----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG-----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHH-------HHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH-----CCCCEEEEEECCccc
Confidence            346899999999764       223456678899999999998876555544 4444443     468999999999997

>PRK13768 GTPase; Provisional

Probab=98.87  E-value=4.2e-09  Score=102.62  Aligned_cols=80  Identities=28%  Similarity=0.341  Sum_probs=56.0

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhccc--CCEEEEEeeCCCCCChhhHHHHHH--HHHhcCCCCCCCCEEEEEeCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDYRTVKE--ELRMYNPDYLERPFIVVLNKI  402 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~r--advIl~VvD~s~~~~~~~~~~l~~--eL~~~~~~l~~kP~IIVlNK~  402 (421)
                      ..+.++||||.++.... ..+...+.+++++  +++++||+|++......++.....  ......   .++|+++|+||+
T Consensus        97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~  172 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKA  172 (253)
T ss_pred             CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhH
Confidence            46999999999886533 5667778888877  899999999976544444332221  111111   468999999999


Q ss_pred             CCCCCCCc
Q 014655          403 DLPEMYDD  410 (421)
Q Consensus       403 Dl~~~~e~  410 (421)
                      |+....+.
T Consensus       173 D~~~~~~~  180 (253)
T PRK13768        173 DLLSEEEL  180 (253)
T ss_pred             hhcCchhH
Confidence            99876544

>PRK12740 elongation factor G; Reviewed

Probab=98.87  E-value=1e-08  Score=112.62  Aligned_cols=110  Identities=25%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             cCCCCCChhHHHHHHhcCCCCc---cCC---------------CCeeeeccceeecCCCCCCccccccceEEecCCcccc
Q 014655          278 VGLPNAGKSTLLAAITHAKPDI---ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE  339 (421)
Q Consensus       278 VG~pNaGKSSLLnaLt~~~~~i---a~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie  339 (421)
                      ||.+|+|||||+++|....-.+   .++               ...|.......+..        .+..+.++||||+.+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--------~~~~i~liDtPG~~~   72 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--------KGHKINLIDTPGHVD   72 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--------CCEEEEEEECCCcHH
Confidence            6999999999999995443221   111               11122211122221        135799999999865


Q ss_pred             cccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       340 ~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .       .......+..+|++++|+|++........ .++..+..     .+.|+++|+||+|+....
T Consensus        73 ~-------~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~-----~~~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         73 F-------TGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK-----YGVPRIIFVNKMDRAGAD  128 (668)
T ss_pred             H-------HHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH-----cCCCEEEEEECCCCCCCC
Confidence            2       22345667889999999999876544443 34444444     368999999999987643

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=98.85  E-value=8e-09  Score=97.12  Aligned_cols=120  Identities=20%  Similarity=0.165  Sum_probs=82.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+++|||+|...+..... +.+|..|.-+...-.+..+.      -...+.|+||+|..+...    +.   -
T Consensus         4 ~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~~------~~~~l~ilDt~g~~~~~~----~~---~   69 (196)
T KOG0395|consen    4 YKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVDG------EVCMLEILDTAGQEEFSA----MR---D   69 (196)
T ss_pred             eEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEECC------EEEEEEEEcCCCcccChH----HH---H
Confidence            4799999999999999999876542 23344333322222222221      123678999999554321    11   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..+|..++|+++++..+++....+++.+.. .......|+++|.||+|+...
T Consensus        70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r-~~~~~~~PivlVGNK~Dl~~~  123 (196)
T KOG0395|consen   70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILR-VKGRDDVPIILVGNKCDLERE  123 (196)
T ss_pred             HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHH-hhCcCCCCEEEEEEcccchhc
Confidence            347788999999999999999998888888832 223345899999999999874

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.80  E-value=1.9e-08  Score=105.91  Aligned_cols=125  Identities=18%  Similarity=0.185  Sum_probs=72.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceee---------------cCCCCCC----------ccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRL---------------DGDPTLG----------AEK  324 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v---------------~~~~~~~----------~~~  324 (421)
                      ..|+++|....|||||+.+|++....-   .-.-+-|++.-....               .......          ...
T Consensus        35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (460)
T PTZ00327         35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT  114 (460)
T ss_pred             EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence            579999999999999999999754321   001111211100000               0000000          000


Q ss_pred             cccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       325 ~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ....+.++|+||+.+       +....+..+..+|++++|||+..+.+..+....+..++.+.    -+++|+|+||+|+
T Consensus       115 ~~~~i~~IDtPGH~~-------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg----i~~iIVvlNKiDl  183 (460)
T PTZ00327        115 LKRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK----LKHIIILQNKIDL  183 (460)
T ss_pred             ccceEeeeeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC----CCcEEEEEecccc
Confidence            124689999999743       33444566778999999999986422222222233344322    2568999999999


Q ss_pred             CCCC
Q 014655          405 PEMY  408 (421)
Q Consensus       405 ~~~~  408 (421)
                      .+.+
T Consensus       184 v~~~  187 (460)
T PTZ00327        184 VKEA  187 (460)
T ss_pred             cCHH
Confidence            8643

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.80  E-value=1.7e-08  Score=112.11  Aligned_cols=121  Identities=18%  Similarity=0.171  Sum_probs=75.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccC-CCC---------------eeeeccceeecCCCCCCccccccceEEec
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF---------------TTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-~pf---------------TTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      ..+..|+++|+.++|||||+.+|....-.+.. ...               .|+......+.+..    ..-+..+.++|
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~----~~~~~~i~liD   93 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY----EGKEYLINLID   93 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe----cCCcEEEEEEc
Confidence            45678999999999999999999754322211 011               11221111111100    00134689999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      |||+.+.       .....+.+..+|++|+|+|+......++.. ++..+..     .+.|.|+++||+|+...
T Consensus        94 tPG~~df-------~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~~~~-----~~~~~iv~iNK~D~~~~  154 (731)
T PRK07560         94 TPGHVDF-------GGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQALR-----ERVKPVLFINKVDRLIK  154 (731)
T ss_pred             CCCccCh-------HHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHHHHH-----cCCCeEEEEECchhhcc
Confidence            9998763       233456678899999999998764444433 4444333     24678999999998743

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=3e-08  Score=87.83  Aligned_cols=126  Identities=18%  Similarity=0.271  Sum_probs=84.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|..+|...|||||+|..|.-..+..   ...|.--++..+.+.        +..+.++|.-|...       +..-|.
T Consensus        18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtyk--------N~kfNvwdvGGqd~-------iRplWr   79 (180)
T KOG0071|consen   18 MRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYK--------NVKFNVWDVGGQDK-------IRPLWR   79 (180)
T ss_pred             ceEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEee--------eeEEeeeeccCchh-------hhHHHH
Confidence            478899999999999999998765321   111222223334332        34789999999643       344454


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~--~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      .+...+..+|||+|+++.+.   ++..++||...  ++++.+.+++|.+||.|++++....+.-.-+++
T Consensus        80 hYy~gtqglIFV~Dsa~~dr---~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL  145 (180)
T KOG0071|consen   80 HYYTGTQGLIFVVDSADRDR---IEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL  145 (180)
T ss_pred             hhccCCceEEEEEeccchhh---HHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc
Confidence            55678999999999987643   44455555542  345677899999999999987654443333433

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.78  E-value=6.2e-09  Score=95.87  Aligned_cols=55  Identities=33%  Similarity=0.562  Sum_probs=45.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  337 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl  337 (421)
                      ..+|+++|.||+|||||+|+|++.+. .++++|++|...+...+.           .++.++||||+
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-----------~~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-----------KKVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-----------CCEEEEECcCC
Confidence            36899999999999999999999876 568999999876554331           36899999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.77  E-value=4.6e-08  Score=87.86  Aligned_cols=126  Identities=21%  Similarity=0.233  Sum_probs=91.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ..+|.++|.-++|||++|..|.=.+-.+ .++.-|..|...+.++.+.     .-...+.+.||.|+..+.   ..|-+ 
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~r-----garE~l~lyDTaGlq~~~---~eLpr-   79 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDR-----GAREQLRLYDTAGLQGGQ---QELPR-   79 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCC-----ChhheEEEeecccccCch---hhhhH-
Confidence            4579999999999999999986554333 3333333344444444332     124579999999997652   22332 


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                        .+++-+|+.++|+|..++.+++..+.|..++..... ..+.|+++..||+|+.+..+
T Consensus        80 --hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd-KKEvpiVVLaN~rdr~~p~~  135 (198)
T KOG3883|consen   80 --HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD-KKEVPIVVLANKRDRAEPRE  135 (198)
T ss_pred             --hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc-cccccEEEEechhhcccchh
Confidence              235778999999999999889999999999988553 35789999999999976544

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=4.3e-09  Score=96.12  Aligned_cols=126  Identities=24%  Similarity=0.270  Sum_probs=86.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc---c--CCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---A--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  344 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a--~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~  344 (421)
                      |.-..|.|+|+-|||||||+-++.......   .  ..-.+|..-+.|++...        ...+.+||.-|..      
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--------~~~l~fwdlgGQe------   80 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--------NAPLSFWDLGGQE------   80 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--------cceeEEEEcCChH------
Confidence            444578999999999999999986533211   1  12233455566666654        3579999999964      


Q ss_pred             CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655          345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~  411 (421)
                       .+..-+..+...|++++||||+++++..+......+.+.. ++.+.+.|+++.+||.|+..+.+..
T Consensus        81 -~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~~~  145 (197)
T KOG0076|consen   81 -SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAMEAA  145 (197)
T ss_pred             -HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhhHH
Confidence             3455566778899999999999986555444333333322 2334679999999999998766543

>cd01858 NGP_1 NGP-1

Probab=98.73  E-value=1.1e-08  Score=91.82  Aligned_cols=54  Identities=31%  Similarity=0.485  Sum_probs=43.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  337 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl  337 (421)
                      ..|+++|.||||||||+|+|.+.+. .++++|+||.......+           ...+.++||||+
T Consensus       103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~liDtPGi  157 (157)
T cd01858         103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-----------MKRIYLIDCPGV  157 (157)
T ss_pred             eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-----------CCCEEEEECcCC
Confidence            4789999999999999999998765 45889999987543221           235899999996

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=8.5e-08  Score=100.75  Aligned_cols=130  Identities=22%  Similarity=0.192  Sum_probs=89.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      +-|.++|+-.-||||||.+|-+...+...--+-|.+.--..+..+..     -...++|+||||+.-....       -.
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-----~~~~itFiDTPGHeAFt~m-------Ra   73 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-----KIPGITFIDTPGHEAFTAM-------RA   73 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-----CCceEEEEcCCcHHHHHHH-------Hh
Confidence            56889999999999999999887766555555565443334433210     0247999999997432100       01


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC--chHHHHhCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD--DSSSRQGIGFN  420 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e--~~~~l~~lGl~  420 (421)
                      +-..-||++++|||+.+....+..+.+.. ++.     .+.|++|++||+|.+++.-  ...++++.||+
T Consensus        74 RGa~vtDIaILVVa~dDGv~pQTiEAI~h-ak~-----a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~  137 (509)
T COG0532          74 RGASVTDIAILVVAADDGVMPQTIEAINH-AKA-----AGVPIVVAINKIDKPEANPDKVKQELQEYGLV  137 (509)
T ss_pred             cCCccccEEEEEEEccCCcchhHHHHHHH-HHH-----CCCCEEEEEecccCCCCCHHHHHHHHHHcCCC
Confidence            22355899999999999877777766543 333     5799999999999986542  23467777765

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.73  E-value=5e-08  Score=102.54  Aligned_cols=113  Identities=19%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-----------------cC--------------CCCeeeeccceeecCCCCCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-----------------AD--------------YPFTTLMPNLGRLDGDPTLG  321 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-----------------a~--------------~pfTTl~p~~g~v~~~~~~~  321 (421)
                      ..|+++|..++|||||+-+|+..--.+                 ..              .-+.|++.....+...    
T Consensus         8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~----   83 (447)
T PLN00043          8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT----   83 (447)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC----
Confidence            579999999999999999886321111                 00              1122333322222211    


Q ss_pred             ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh------hhHHHHHHHHHhcCCCCCCC-C
Q 014655          322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLER-P  394 (421)
Q Consensus       322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~k-P  394 (421)
                          ...++++||||+.+.       .......+..+|+.|+|||+......      .+.+..+..+..     .+. +
T Consensus        84 ----~~~i~liDtPGh~df-------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-----~gi~~  147 (447)
T PLN00043         84 ----KYYCTVIDAPGHRDF-------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-----LGVKQ  147 (447)
T ss_pred             ----CEEEEEEECCCHHHH-------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-----cCCCc
Confidence                347999999997653       22334556789999999999864211      233333333333     345 4


Q ss_pred             EEEEEeCCCCC
Q 014655          395 FIVVLNKIDLP  405 (421)
Q Consensus       395 ~IIVlNK~Dl~  405 (421)
                      +|+|+||+|+.
T Consensus       148 iIV~vNKmD~~  158 (447)
T PLN00043        148 MICCCNKMDAT  158 (447)
T ss_pred             EEEEEEcccCC
Confidence            68899999986

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=4.8e-08  Score=87.64  Aligned_cols=121  Identities=18%  Similarity=0.131  Sum_probs=83.4

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCc--c---CCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI--A---DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a---~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~  343 (421)
                      ..-+.++.++|..++|||.||..+...+-+-  +   ...|.....++|.           -..+++||||.|....   
T Consensus         6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-----------K~vKLQIWDTAGQErF---   71 (214)
T KOG0086|consen    6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-----------KTVKLQIWDTAGQERF---   71 (214)
T ss_pred             hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-----------cEEEEEEeecccHHHH---
Confidence            3456789999999999999999998654321  1   1122222222211           1347899999997543   


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                          ......+.+.|-..++|+|+++.++++.+..|+...+.+.+  .++-+|++.||.||....+
T Consensus        72 ----RSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~  131 (214)
T KOG0086|consen   72 ----RSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPERE  131 (214)
T ss_pred             ----HHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhh
Confidence                22233456778888999999999888888777777776543  4566788899999987654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=1.1e-07  Score=99.82  Aligned_cols=132  Identities=20%  Similarity=0.171  Sum_probs=91.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      ..+..+-|-++|+-.-||||||.+|.+...+-...-+.|.+.--..+....       +.+++|.||||+.-...     
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-------G~~iTFLDTPGHaAF~a-----  216 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-------GKSITFLDTPGHAAFSA-----  216 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-------CCEEEEecCCcHHHHHH-----
Confidence            345667899999999999999999988876655555556543333343321       36899999999753211     


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC--CchHHHHhCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY--DDSSSRQGIGF  419 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~--e~~~~l~~lGl  419 (421)
                        .-.+-..-+|++++||-+.+....+..+.+...-.      .+.|+||.+||||.+++.  ....+|...|+
T Consensus       217 --MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~------A~VpiVvAinKiDkp~a~pekv~~eL~~~gi  282 (683)
T KOG1145|consen  217 --MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS------ANVPIVVAINKIDKPGANPEKVKRELLSQGI  282 (683)
T ss_pred             --HHhccCccccEEEEEEEccCCccHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCHHHHHHHHHHcCc
Confidence              01122355899999999998887777776665433      579999999999988653  22345555554

>cd01855 YqeH YqeH

Probab=98.65  E-value=2.3e-08  Score=92.38  Aligned_cols=54  Identities=37%  Similarity=0.393  Sum_probs=44.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC---------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK---------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  337 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~---------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl  337 (421)
                      ..|+++|.||+|||||+|+|.+..         +.++..|+||+++....+.           ..+.|+||||+
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-----------NGKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-----------CCCEEEeCcCC
Confidence            479999999999999999998743         3557889999998766553           24799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=98.65  E-value=8.8e-08  Score=86.87  Aligned_cols=118  Identities=21%  Similarity=0.163  Sum_probs=85.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee------ecCCCCCCccccccceEEecCCcccccccccCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR------LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  346 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~------v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g  346 (421)
                      .++.+||..-+|||+||..++..+.+--      .||.+|+      ++..|     .+..++++|||.|....      
T Consensus         9 frlivigdstvgkssll~~ft~gkfael------sdptvgvdffarlie~~p-----g~riklqlwdtagqerf------   71 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEGKFAEL------SDPTVGVDFFARLIELRP-----GYRIKLQLWDTAGQERF------   71 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcCccccc------CCCccchHHHHHHHhcCC-----CcEEEEEEeeccchHHH------
Confidence            4667899999999999999998764321      1454443      22222     23457999999997553      


Q ss_pred             hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                       ......+.+.+-.+++|+|+++..+++..+.|..|...+-....+.-+++|..|+||....
T Consensus        72 -rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR  132 (213)
T KOG0091|consen   72 -RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR  132 (213)
T ss_pred             -HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc
Confidence             2223455677788999999999999999998888887765444445578899999998643

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.64  E-value=2.3e-08  Score=100.84  Aligned_cols=57  Identities=39%  Similarity=0.488  Sum_probs=48.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      .+|++||+||+|||||||+|.+... .++++|++|..-+...+.           ..+.++||||++-.
T Consensus       133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-----------~~i~LlDtPGii~~  190 (322)
T COG1161         133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-----------DGIYLLDTPGIIPP  190 (322)
T ss_pred             eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-----------CCeEEecCCCcCCC
Confidence            6799999999999999999999886 459999999887665443           45899999999864

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.62  E-value=1.2e-07  Score=98.06  Aligned_cols=136  Identities=19%  Similarity=0.202  Sum_probs=83.7

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc------cCCCCee--eeccceeecCCCCCCccccccceEEecCCccccccc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI------ADYPFTT--LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i------a~~pfTT--l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~  342 (421)
                      .+.+|++|-+..-|||||+..|..+.-..      +.....+  +.-..|+..........+-+..|.|+||||+.+.- 
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG-   82 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG-   82 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc-
Confidence            34578999999999999999998754221      1100000  11111111111111111224589999999987652 


Q ss_pred             ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC------chHHHHh
Q 014655          343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD------DSSSRQG  416 (421)
Q Consensus       343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e------~~~~l~~  416 (421)
                            -..-+-+.-.|.++++||+......+.-..+...|+.      +.+-|+|+||+|.+.+.-      .++.|..
T Consensus        83 ------GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~  150 (603)
T COG1217          83 ------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVDEVFDLFVE  150 (603)
T ss_pred             ------chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence                  2233445667999999999987666666667777774      445588999999988752      3455555


Q ss_pred             CCC
Q 014655          417 IGF  419 (421)
Q Consensus       417 lGl  419 (421)
                      +|-
T Consensus       151 L~A  153 (603)
T COG1217         151 LGA  153 (603)
T ss_pred             hCC
Confidence            553

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.60  E-value=6.5e-08  Score=98.93  Aligned_cols=86  Identities=26%  Similarity=0.351  Sum_probs=57.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  346 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g  346 (421)
                      .+|.+||.+|||||||+|+|.+..      +.++++|+||+......+.           ..+.++||||+........-
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-----------~~~~l~DtPG~~~~~~~~~~  223 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-----------DGHSLYDTPGIINSHQMAHY  223 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-----------CCCEEEECCCCCChhHhhhh
Confidence            589999999999999999999854      3458899999987654431           24689999999864211111


Q ss_pred             hhHHHHHhc---ccCCEEEEEeeCCC
Q 014655          347 LGRNFLRHL---RRTRLLVHVIDAAA  369 (421)
Q Consensus       347 l~~~fL~~i---~radvIl~VvD~s~  369 (421)
                      +....++.+   ++...+.|++|..+
T Consensus       224 l~~~~l~~~~~~~~i~~~~~~l~~~q  249 (360)
T TIGR03597       224 LDKKDLKYITPKKEIKPKTYQLNPNQ  249 (360)
T ss_pred             cCHHHHhhcCCCCccCceEEEeCCCC
Confidence            222222222   33456667776544

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.59  E-value=5.1e-08  Score=87.44  Aligned_cols=56  Identities=32%  Similarity=0.534  Sum_probs=46.3

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  337 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl  337 (421)
                      ...+|+++|.||+|||||+|+|++... .+++.++||.+.....+.           ..+.++||||+
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-----------NKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-----------CCEEEEECCCC
Confidence            346899999999999999999998774 568889999987765432           36899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.58  E-value=7.3e-08  Score=95.50  Aligned_cols=60  Identities=27%  Similarity=0.368  Sum_probs=49.0

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  341 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a  341 (421)
                      ...+|+++|.||+|||||+|+|++.+. .+++.|++|.......+           +..+.++||||+....
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtPGi~~~~  180 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-----------GKGLELLDTPGILWPK  180 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-----------CCcEEEEECCCcCCCC
Confidence            346899999999999999999999876 66899999998764332           2368999999998654

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.58  E-value=2e-07  Score=90.97  Aligned_cols=80  Identities=24%  Similarity=0.304  Sum_probs=46.4

Q ss_pred             ceEEecCCcccccc--cccCchhHHHHHhcccCCEEEEEeeCCCCCChhhH-H-HHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          328 EATLADLPGLIEGA--HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-R-TVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       328 ~i~iiDtPGlie~a--~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~-~-~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      +++++||||.||-.  +..-.+.-..|... .--+++||+|.........+ . .|...-..|.   .+.|+|+|+||+|
T Consensus       117 ~~~liDTPGQIE~FtWSAsGsIIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D  192 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSASGSIITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD  192 (366)
T ss_pred             CEEEEcCCCceEEEEecCCccchHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence            48999999999842  21111222222322 23589999997653322222 1 1222112232   5689999999999


Q ss_pred             CCCCCCch
Q 014655          404 LPEMYDDS  411 (421)
Q Consensus       404 l~~~~e~~  411 (421)
                      +.+..-..
T Consensus       193 v~d~~fa~  200 (366)
T KOG1532|consen  193 VSDSEFAL  200 (366)
T ss_pred             ccccHHHH
Confidence            99875433

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=2.1e-07  Score=95.23  Aligned_cols=115  Identities=23%  Similarity=0.237  Sum_probs=68.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-----------------c--------------CCCCeeeeccceeecCCCCCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-----------------A--------------DYPFTTLMPNLGRLDGDPTLG  321 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-----------------a--------------~~pfTTl~p~~g~v~~~~~~~  321 (421)
                      .+++++|++++|||||+-+|.=.--.+                 .              .+-+.|.+.....++.+    
T Consensus         8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~----   83 (428)
T COG5256           8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD----   83 (428)
T ss_pred             eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC----
Confidence            478999999999999999985221111                 1              11223333322222222    


Q ss_pred             ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC------ChhhHHHHHHHHHhcCCCCCCCCE
Q 014655          322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERPF  395 (421)
Q Consensus       322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~kP~  395 (421)
                          ...++|+|+||+.+.       ......-+..||+.|+|||+....      ...+.+... .|..+.   .-..+
T Consensus        84 ----k~~~tIiDaPGHrdF-------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tl---Gi~~l  148 (428)
T COG5256          84 ----KYNFTIIDAPGHRDF-------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTL---GIKQL  148 (428)
T ss_pred             ----CceEEEeeCCchHHH-------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhc---CCceE
Confidence                136999999996543       222333447899999999998763      112222221 222221   12558


Q ss_pred             EEEEeCCCCCC
Q 014655          396 IVVLNKIDLPE  406 (421)
Q Consensus       396 IIVlNK~Dl~~  406 (421)
                      ||++||||+++
T Consensus       149 IVavNKMD~v~  159 (428)
T COG5256         149 IVAVNKMDLVS  159 (428)
T ss_pred             EEEEEcccccc
Confidence            99999999986

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.57  E-value=3.7e-08  Score=95.27  Aligned_cols=76  Identities=29%  Similarity=0.418  Sum_probs=40.4

Q ss_pred             ceEEecCCcccccccccCchhHHHHHhccc--CCEEEEEeeCCCCCChhhH-HHHHHHHH-hcCCCCCCCCEEEEEeCCC
Q 014655          328 EATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDY-RTVKEELR-MYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~r--advIl~VvD~s~~~~~~~~-~~l~~eL~-~~~~~l~~kP~IIVlNK~D  403 (421)
                      .+.++||||++|-... ......+.+.+.+  .-+++|++|+........+ ..++..+. .+.   .+.|+|.|+||+|
T Consensus        92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccC
Confidence            5899999999984321 2234445566653  4478999998754333333 22222111 111   4689999999999


Q ss_pred             CCCC
Q 014655          404 LPEM  407 (421)
Q Consensus       404 l~~~  407 (421)
                      +...
T Consensus       168 l~~~  171 (238)
T PF03029_consen  168 LLSK  171 (238)
T ss_dssp             GS-H
T ss_pred             cccc
Confidence            9873

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=2.7e-07  Score=101.30  Aligned_cols=120  Identities=26%  Similarity=0.223  Sum_probs=80.3

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCc---cCCC---------------CeeeeccceeecCCCCCCccccccceE
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYP---------------FTTLMPNLGRLDGDPTLGAEKYSSEAT  330 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~p---------------fTTl~p~~g~v~~~~~~~~~~~~~~i~  330 (421)
                      +..+.+|+++++-.+|||||.-+|.-..-.+   .+..               +.|+......+...       .+..|.
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~-------~~~~iN   79 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWK-------GDYRIN   79 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-------CceEEE
Confidence            4456789999999999999999986432222   1111               11111111111111       025899


Q ss_pred             EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ++||||+++..       ...-+.++-+|..+.|+|+......+ .+.+|..+..|     +.|.++++||||...++
T Consensus        80 lIDTPGHVDFt-------~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~~-----~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          80 LIDTPGHVDFT-------IEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADKY-----GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             EeCCCCccccH-------HHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence            99999999863       23446677889999999998865444 45566666664     58999999999998765

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.7e-07  Score=98.49  Aligned_cols=122  Identities=21%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEec
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      ...+.++++|-+-.-|||||..+|....-.+.+               .-+.|...+...+.+..     ....-+.+||
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-----~~~ylLNLID  131 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-----GQSYLLNLID  131 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-----CCceEEEeec
Confidence            456778999999999999999998764322211               22334333222222211     1124689999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      |||+.+..-       ..-+.+.-||.+|+|||+++....+....++..++.      +..+|.|+||+|++.++
T Consensus       132 TPGHvDFs~-------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~------~L~iIpVlNKIDlp~ad  193 (650)
T KOG0462|consen  132 TPGHVDFSG-------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA------GLAIIPVLNKIDLPSAD  193 (650)
T ss_pred             CCCcccccc-------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc------CCeEEEeeeccCCCCCC
Confidence            999988632       234556789999999999998777777777777763      56789999999998765

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.54  E-value=8.2e-08  Score=94.57  Aligned_cols=58  Identities=31%  Similarity=0.420  Sum_probs=47.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      ..+|++||.||+|||||+|+|++.+ ..+++.|++|..+....+           ...+.++||||+...
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtPG~~~~  176 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-----------SDGLELLDTPGILWP  176 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-----------CCCEEEEECCCcccC
Confidence            4679999999999999999999877 456899999988764433           135899999999654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=98.51  E-value=5.7e-08  Score=87.65  Aligned_cols=119  Identities=22%  Similarity=0.225  Sum_probs=81.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccc--eeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~--g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ++|.|+|.-=+|||||+=++...+..-  ...+|+....  ..++..      .....+.||||.|....    ..++..
T Consensus        14 FK~VLLGEGCVGKtSLVLRy~EnkFn~--kHlsTlQASF~~kk~n~e------d~ra~L~IWDTAGQErf----HALGPI   81 (218)
T KOG0088|consen   14 FKIVLLGEGCVGKTSLVLRYVENKFNC--KHLSTLQASFQNKKVNVE------DCRADLHIWDTAGQERF----HALGPI   81 (218)
T ss_pred             eEEEEEcCCccchhHHHHHHHHhhcch--hhHHHHHHHHhhcccccc------cceeeeeeeeccchHhh----hccCce
Confidence            689999999999999998887654221  1122322111  011111      11346899999997543    112222


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                         +.+.++..++|+|+++.++++..+.|..||+....  ...-++||.||+||.+..
T Consensus        82 ---YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR  134 (218)
T KOG0088|consen   82 ---YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEER  134 (218)
T ss_pred             ---EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC--CeeEEEEecCcccHHHhh
Confidence               24678999999999999999999988888887543  356789999999997643

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.50  E-value=2.4e-07  Score=94.90  Aligned_cols=114  Identities=21%  Similarity=0.279  Sum_probs=63.5

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCC---CccC--CCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKP---DIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  344 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~---~ia~--~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~  344 (421)
                      ..-.+||++|.+|+|||||||+|.+-..   ..++  ..-||..+.......         -..+++||+||+-...   
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~---------~pnv~lWDlPG~gt~~---  100 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK---------FPNVTLWDLPGIGTPN---  100 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS----------TTEEEEEE--GGGSS---
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC---------CCCCeEEeCCCCCCCC---
Confidence            3446899999999999999999976321   1122  223455444333221         1369999999985431   


Q ss_pred             CchhHHHHHh--cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          345 KGLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       345 ~gl~~~fL~~--i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                       --...+++.  +.+.|++|+|.+-  .....+.. |..+++.     .++|+.+|.+|+|.
T Consensus       101 -f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~-La~~i~~-----~gK~fyfVRTKvD~  153 (376)
T PF05049_consen  101 -FPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQ-LAKEIQR-----MGKKFYFVRTKVDS  153 (376)
T ss_dssp             ---HHHHHHHTTGGG-SEEEEEESS--S--HHHHH-HHHHHHH-----TT-EEEEEE--HHH
T ss_pred             -CCHHHHHHHccccccCEEEEEeCC--CCchhhHH-HHHHHHH-----cCCcEEEEEecccc
Confidence             123345554  4678987776653  23344443 5566666     46999999999995

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=98.50  E-value=1.4e-07  Score=88.52  Aligned_cols=130  Identities=20%  Similarity=0.156  Sum_probs=87.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .++.+||...+|||+||-.++... ....|.-|-.+.....+..+.     .-...+.+|||.|..+...    +. - |
T Consensus         5 ~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvPTVFdnys~~v~V~d-----g~~v~L~LwDTAGqedYDr----lR-p-l   72 (198)
T KOG0393|consen    5 IKCVVVGDGAVGKTCLLISYTTNA-FPEEYVPTVFDNYSANVTVDD-----GKPVELGLWDTAGQEDYDR----LR-P-L   72 (198)
T ss_pred             eEEEEECCCCcCceEEEEEeccCc-CcccccCeEEccceEEEEecC-----CCEEEEeeeecCCCccccc----cc-c-c
Confidence            588999999999999999987652 223333332222222232210     1124689999999887621    21 1 1


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG  418 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG  418 (421)
                       ....+|++++++++.++.+.+.. ..|.-|++.+.   .+.|+|+|.+|.||.++....+.++..+
T Consensus        73 -sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d~~~~~~l~~~~  135 (198)
T KOG0393|consen   73 -SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDDPSTLEKLQRQG  135 (198)
T ss_pred             -CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhCHHHHHHHHhcc
Confidence             34779999999999988877664 55677888887   4789999999999986544444454433

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.46  E-value=1.9e-07  Score=82.47  Aligned_cols=54  Identities=39%  Similarity=0.545  Sum_probs=42.9

Q ss_pred             eecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCccc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI  338 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGli  338 (421)
                      +++++|.+|+|||||+|+|.+.+. .++..+.+|.+.....+.           ..+.++||||+.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~DtpG~~  139 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT-----------PTITLCDCPGLV  139 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC-----------CCEEEEECCCcC
Confidence            799999999999999999998774 457778887765543331           358999999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK13796 GTPase YqeH; Provisional

Probab=98.42  E-value=2e-07  Score=95.57  Aligned_cols=57  Identities=39%  Similarity=0.444  Sum_probs=44.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      .+|.+||.||||||||+|+|....      ..++++|+||++.....+.           ....++||||++..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-----------~~~~l~DTPGi~~~  223 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-----------DGSFLYDTPGIIHR  223 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-----------CCcEEEECCCcccc
Confidence            479999999999999999998542      2358899999987654332           23589999999753

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.40  E-value=1.3e-06  Score=92.56  Aligned_cols=119  Identities=21%  Similarity=0.291  Sum_probs=77.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC--CccC-CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP--DIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~--~ia~-~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      .+|+|+|..++|||||+.+|...+-  .|.+ .|-.|+ |....    |    +  .....|+||+--.+.       ..
T Consensus        10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~I-Padvt----P----e--~vpt~ivD~ss~~~~-------~~   71 (625)
T KOG1707|consen   10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILI-PADVT----P----E--NVPTSIVDTSSDSDD-------RL   71 (625)
T ss_pred             eEEEEECCCCccHHHHHHHHHhhhccccccccCCcccc-CCccC----c----C--cCceEEEecccccch-------hH
Confidence            5899999999999999999998762  2221 122222 21111    1    0  124789999843221       12


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...+.+++||++++|++++++.+.+.+.. |+-.++.......+.|+|+|.||+|......
T Consensus        72 ~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~  132 (625)
T KOG1707|consen   72 CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN  132 (625)
T ss_pred             HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence            23467899999999999988666555433 3334444333447899999999999976543

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.37  E-value=3.1e-06  Score=81.04  Aligned_cols=92  Identities=20%  Similarity=0.001  Sum_probs=58.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcC--CCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA--KPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~--~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      +.-|+++|.+++|||||+|.|.+.  ...+ ...+.||............     .-...+.++||||+.+..... ...
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-----~~~~~v~~lDteG~~~~~~~~-~~~   80 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-----GKEHAVLLLDTEGTDGRERGE-FED   80 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-----CCcceEEEEecCCcCccccCc-hhh
Confidence            356899999999999999999998  4444 3345666544333322210     012479999999998653221 011


Q ss_pred             HHHHHhcc--cCCEEEEEeeCCC
Q 014655          349 RNFLRHLR--RTRLLVHVIDAAA  369 (421)
Q Consensus       349 ~~fL~~i~--radvIl~VvD~s~  369 (421)
                      ...+-.+.  -++++||.++...
T Consensus        81 ~~~~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          81 DARLFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             hhHHHHHHHHHhCEEEEeccCcc
Confidence            22222333  4899999998764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.36  E-value=1.3e-06  Score=85.65  Aligned_cols=119  Identities=19%  Similarity=0.137  Sum_probs=73.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccc-----cccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE-----GAHL  343 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie-----~a~~  343 (421)
                      .+.++++|..|+|||||||.++..+..-   ...++.|...+...+           +.++.++|+||+-.     .+.+
T Consensus       136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-----------~~~~~~vDlPG~~~a~y~~~~~~  204 (320)
T KOG2486|consen  136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-----------GKSWYEVDLPGYGRAGYGFELPA  204 (320)
T ss_pred             CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-----------cceEEEEecCCcccccCCccCcc
Confidence            3679999999999999999999876321   224444443332222           35799999999421     1111


Q ss_pred             -cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          344 -GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       344 -~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                       ...+...++-.-+.--.+++++|++.+....|.. ..+++.+     .+.|+.+|+||||....
T Consensus       205 d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~ge-----~~VP~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  205 DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLGE-----NNVPMTSVFTKCDKQKK  263 (320)
T ss_pred             hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHhh-----cCCCeEEeeehhhhhhh
Confidence             1112222222222223356778988766555544 3345655     57999999999998654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.34  E-value=4.5e-07  Score=89.84  Aligned_cols=124  Identities=18%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccC--CC--------CeeeeccceeecCCCCCCccccccceEEecCCccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD--YP--------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~--~p--------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~  342 (421)
                      .+|.+||.+|+|||||+|.|.+.......  ++        ..++......+...      .....++|+||||+-+.-.
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~------~~~l~LtiiDTpGfGd~i~   78 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEEN------GVKLNLTIIDTPGFGDNID   78 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEET------CEEEEEEEEEEC-CSSSST
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccC------CcceEEEEEeCCCcccccc
Confidence            57899999999999999999987643321  11        11122211122211      1234799999999865321


Q ss_pred             ccC-------chhHHHHHhc-------------ccCCEEEEEeeCCCC-CChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          343 LGK-------GLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       343 ~~~-------gl~~~fL~~i-------------~radvIl~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                      ...       -+...|-.++             .|.|++||+++++.. -...+++ .+..|..      ..++|-|+.|
T Consensus        79 n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~------~vNvIPvIaK  151 (281)
T PF00735_consen   79 NSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSK------RVNVIPVIAK  151 (281)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTT------TSEEEEEEST
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhcc------cccEEeEEec
Confidence            100       0111222222             356899999998753 3344544 3334442      4678999999


Q ss_pred             CCCCCCCC
Q 014655          402 IDLPEMYD  409 (421)
Q Consensus       402 ~Dl~~~~e  409 (421)
                      +|....+|
T Consensus       152 aD~lt~~e  159 (281)
T PF00735_consen  152 ADTLTPEE  159 (281)
T ss_dssp             GGGS-HHH
T ss_pred             ccccCHHH
Confidence            99987654

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.33  E-value=4.3e-07  Score=83.56  Aligned_cols=124  Identities=19%  Similarity=0.056  Sum_probs=82.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  346 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g  346 (421)
                      .+...+++.+||--++||||+|.+.+..-. ..+|.-|- .+-....+...      .-...+.+|||.|..|..     
T Consensus        16 d~e~aiK~vivGng~VGKssmiqryCkgif-TkdykktIgvdflerqi~v~------~Edvr~mlWdtagqeEfD-----   83 (246)
T KOG4252|consen   16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIKVL------IEDVRSMLWDTAGQEEFD-----   83 (246)
T ss_pred             hhhhhEEEEEECCCccchHHHHHHHhcccc-ccccccccchhhhhHHHHhh------HHHHHHHHHHhccchhHH-----
Confidence            355667899999999999999999985321 11221110 00000000000      012357899999987642     


Q ss_pred             hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                        .....+.+.|.+.++|+.-++..+++....|++.+..-   -..+|.++|-||+|+.+..
T Consensus        84 --aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e---~~~IPtV~vqNKIDlveds  140 (246)
T KOG4252|consen   84 --AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE---TERIPTVFVQNKIDLVEDS  140 (246)
T ss_pred             --HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH---hccCCeEEeeccchhhHhh
Confidence              12235567888999999999888888777777777653   3579999999999998754

>cd01856 YlqF YlqF

Probab=98.32  E-value=7.2e-07  Score=81.34  Aligned_cols=55  Identities=29%  Similarity=0.385  Sum_probs=44.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  337 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl  337 (421)
                      ..+|+++|.+|+|||||+|+|.+... .+++.++||.......+.           ..+.++||||+
T Consensus       115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-----------~~~~~iDtpG~  170 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-----------PGIYLLDTPGI  170 (171)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-----------CCEEEEECCCC
Confidence            35799999999999999999998764 557889999876654332           25899999997

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.32  E-value=3.3e-07  Score=95.77  Aligned_cols=58  Identities=36%  Similarity=0.455  Sum_probs=47.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      ...||+||+|||||||+||+|.+.+ +.++..|+-|.+-+.-.+           ...+.++|.||++-.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-----------s~~v~LCDCPGLVfP  372 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-----------SPSVCLCDCPGLVFP  372 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-----------CCCceecCCCCcccc
Confidence            4689999999999999999999987 467889999986554433           246899999999864

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=5.4e-07  Score=80.33  Aligned_cols=128  Identities=18%  Similarity=0.212  Sum_probs=81.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .++.++|.-+|||+|++-.+--.+.- ...|  |..-+...+.+.        +-++.++|.-|.-       .+..-|.
T Consensus        19 ~rililgldGaGkttIlyrlqvgevv-ttkP--tigfnve~v~yK--------NLk~~vwdLggqt-------SirPyWR   80 (182)
T KOG0072|consen   19 MRILILGLDGAGKTTILYRLQVGEVV-TTKP--TIGFNVETVPYK--------NLKFQVWDLGGQT-------SIRPYWR   80 (182)
T ss_pred             eEEEEeeccCCCeeEEEEEcccCccc-ccCC--CCCcCccccccc--------cccceeeEccCcc-------cccHHHH
Confidence            36788999999999998877543311 1111  111122223322        2368999998853       3445566


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN  420 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~  420 (421)
                      .+.+.+|.++||||.++.+..... ..+..+|.+  +++....+++++||+|.......-+.+..+|++
T Consensus        81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E--~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~  147 (182)
T KOG0072|consen   81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQE--EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQ  147 (182)
T ss_pred             HHhcccceEEEEEeccchhhhhhhHHHHHHHhcc--HhhcCceEEEEeccccchhhhhHHHHHHHhChH
Confidence            778999999999999986643322 223333332  233456689999999998887777777777664

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.30  E-value=8.9e-07  Score=91.93  Aligned_cols=125  Identities=22%  Similarity=0.191  Sum_probs=86.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCc---------------cCCCCeeeeccceeecCCCCCCccccccceEEe
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA  332 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~ii  332 (421)
                      .++.+.+..+|-+-.-|||||-.+|....-.+               ...-+.|+..+...+.+....   ...+.+.++
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~---g~~Y~lnlI   81 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD---GETYVLNLI   81 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC---CCEEEEEEc
Confidence            34566778888899999999999986532222               123355655555455443210   113468999


Q ss_pred             cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ||||+.+..-+       .-+.+..|...++|||+++....+.+..++..++.      +.-+|-|+||+||+.++
T Consensus        82 DTPGHVDFsYE-------VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~------~LeIiPViNKIDLP~Ad  144 (603)
T COG0481          82 DTPGHVDFSYE-------VSRSLAACEGALLVVDASQGVEAQTLANVYLALEN------NLEIIPVLNKIDLPAAD  144 (603)
T ss_pred             CCCCccceEEE-------ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc------CcEEEEeeecccCCCCC
Confidence            99999886422       34566788889999999998766777777777763      55678899999998765

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.29  E-value=2.1e-06  Score=75.03  Aligned_cols=106  Identities=20%  Similarity=0.232  Sum_probs=67.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .++++||..++|||||+++|-+....-.    .|   +  -+++.          +-..+||||..-.   ++..-++.+
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk----KT---Q--Ave~~----------d~~~IDTPGEy~~---~~~~Y~aL~   59 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK----KT---Q--AVEFN----------DKGDIDTPGEYFE---HPRWYHALI   59 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhc----cc---c--eeecc----------CccccCCchhhhh---hhHHHHHHH
Confidence            3789999999999999999998763210    01   1  12221          1246899996432   233334445


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      -....+|++++|-.+.++.+  .+..      .+ .....+|+|-|++|+|+++..+
T Consensus        60 tt~~dadvi~~v~~and~~s--~f~p------~f-~~~~~k~vIgvVTK~DLaed~d  107 (148)
T COG4917          60 TTLQDADVIIYVHAANDPES--RFPP------GF-LDIGVKKVIGVVTKADLAEDAD  107 (148)
T ss_pred             HHhhccceeeeeecccCccc--cCCc------cc-ccccccceEEEEecccccchHh
Confidence            56688999999999886532  1100      00 0123577999999999996443

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=2.7e-06  Score=91.17  Aligned_cols=122  Identities=27%  Similarity=0.383  Sum_probs=80.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC-CCc-----cCCCCeee--eccceee--cCCCCC----CccccccceEEecCCc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK-PDI-----ADYPFTTL--MPNLGRL--DGDPTL----GAEKYSSEATLADLPG  336 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~-~~i-----a~~pfTTl--~p~~g~v--~~~~~~----~~~~~~~~i~iiDtPG  336 (421)
                      .+..|+++|+-.+|||+|+..|.... +..     ++.-+|+.  ......+  +..+..    +....+.-++++||||
T Consensus       127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG  206 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG  206 (971)
T ss_pred             eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence            45689999999999999999997653 211     22222221  1111111  100000    0011233589999999


Q ss_pred             ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      +....       ......++.+|++++|||+....+....+.+.+.++      ...|+++|+||+|+.
T Consensus       207 HVnF~-------DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq------~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  207 HVNFS-------DETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ------NRLPIVVVINKVDRL  262 (971)
T ss_pred             cccch-------HHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh------ccCcEEEEEehhHHH
Confidence            98753       234566788999999999998888777777777776      368999999999974

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=3.4e-06  Score=86.98  Aligned_cols=120  Identities=22%  Similarity=0.206  Sum_probs=78.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCc---------cCCCCeee-------------eccceeecCCCCCCcccc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---------ADYPFTTL-------------MPNLGRLDGDPTLGAEKY  325 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---------a~~pfTTl-------------~p~~g~v~~~~~~~~~~~  325 (421)
                      |+..-...+||-+|.||||||--.|.----+|         ....++|.             ...+-.+++.        
T Consensus         8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~--------   79 (528)
T COG4108           8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA--------   79 (528)
T ss_pred             HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC--------
Confidence            44444578999999999999999875321111         11112221             1111122222        


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      +..+.+.||||+.+.       .....+.+-.+|..|.|||+....-.+. ..|.+..+.     -+.|++-.+||+|..
T Consensus        80 ~~~iNLLDTPGHeDF-------SEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl-----R~iPI~TFiNKlDR~  146 (528)
T COG4108          80 DCLVNLLDTPGHEDF-------SEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL-----RDIPIFTFINKLDRE  146 (528)
T ss_pred             CeEEeccCCCCcccc-------chhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh-----cCCceEEEeeccccc
Confidence            346899999998765       3345678888999999999987653333 345555554     469999999999986


Q ss_pred             CCC
Q 014655          406 EMY  408 (421)
Q Consensus       406 ~~~  408 (421)
                      ..+
T Consensus       147 ~rd  149 (528)
T COG4108         147 GRD  149 (528)
T ss_pred             cCC
Confidence            543

>PTZ00099 rab6; Provisional

Probab=98.26  E-value=2.1e-06  Score=79.08  Aligned_cols=71  Identities=17%  Similarity=0.084  Sum_probs=52.4

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..+.||||||......    +.   -.+++.||++|+|+|++++.+++....+..++.....  ...|+++|+||+|+..
T Consensus        29 v~l~iwDt~G~e~~~~----~~---~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~DL~~   99 (176)
T PTZ00099         29 VRLQLWDTAGQERFRS----LI---PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKTDLGD   99 (176)
T ss_pred             EEEEEEECCChHHhhh----cc---HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECccccc
Confidence            4789999999755421    22   2446889999999999987777776666666654331  3578999999999964

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=3.6e-06  Score=89.23  Aligned_cols=125  Identities=24%  Similarity=0.264  Sum_probs=75.9

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC--------------C-Cc--cCCC--------------CeeeeccceeecCCCC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK--------------P-DI--ADYP--------------FTTLMPNLGRLDGDPT  319 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~--------------~-~i--a~~p--------------fTTl~p~~g~v~~~~~  319 (421)
                      ......++|..+||||||+..|.-.-              . ..  +.+.              +.|.+.....++.   
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes---  252 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES---  252 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec---
Confidence            45578899999999999999875210              0 01  1111              1111111111111   


Q ss_pred             CCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC------CChhhHHHHHHHHHhcCCCCCCC
Q 014655          320 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPDYLER  393 (421)
Q Consensus       320 ~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~------~~~~~~~~l~~eL~~~~~~l~~k  393 (421)
                           -...++++|+||+-+.       ....+.-+..||+.++|||++..      ++..+.+.....|+.++    -.
T Consensus       253 -----~~~~~tliDaPGhkdF-------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg----i~  316 (603)
T KOG0458|consen  253 -----KSKIVTLIDAPGHKDF-------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG----IS  316 (603)
T ss_pred             -----CceeEEEecCCCcccc-------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC----cc
Confidence                 1346999999996443       22234445678999999999864      23344555555666543    24


Q ss_pred             CEEEEEeCCCCCC-CCCchHHH
Q 014655          394 PFIVVLNKIDLPE-MYDDSSSR  414 (421)
Q Consensus       394 P~IIVlNK~Dl~~-~~e~~~~l  414 (421)
                      .+||++||||+++ .+++++++
T Consensus       317 qlivaiNKmD~V~Wsq~RF~eI  338 (603)
T KOG0458|consen  317 QLIVAINKMDLVSWSQDRFEEI  338 (603)
T ss_pred             eEEEEeecccccCccHHHHHHH
Confidence            5899999999986 44555543

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=98.25  E-value=3e-07  Score=80.93  Aligned_cols=114  Identities=19%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             ccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHh
Q 014655          277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH  354 (421)
Q Consensus       277 LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~  354 (421)
                      ++|...+|||.|+-++..... .+..-..|.  +-..-.+..+      ....++++|||.|....       ....-.+
T Consensus         2 llgds~~gktcllir~kdgaf-l~~~fistvgid~rnkli~~~------~~kvklqiwdtagqerf-------rsvt~ay   67 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAF-LAGNFISTVGIDFRNKLIDMD------DKKVKLQIWDTAGQERF-------RSVTHAY   67 (192)
T ss_pred             ccccCccCceEEEEEeccCce-ecCceeeeeeeccccceeccC------CcEEEEEEeeccchHHH-------hhhhHhh
Confidence            689999999999876643321 111111121  1111111111      11347899999997543       2223355


Q ss_pred             cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+.+|++++++|+.+..+++..+.|+.++..|..+  ...+.++.||+|+..
T Consensus        68 yrda~allllydiankasfdn~~~wlsei~ey~k~--~v~l~llgnk~d~a~  117 (192)
T KOG0083|consen   68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKE--AVALMLLGNKCDLAH  117 (192)
T ss_pred             hcccceeeeeeecccchhHHHHHHHHHHHHHHHHh--hHhHhhhccccccch
Confidence            78899999999999999999999999999998753  466789999999965

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.24  E-value=1.2e-06  Score=87.27  Aligned_cols=63  Identities=19%  Similarity=0.154  Sum_probs=41.4

Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      +..++|+||||....          ....++.+|.+++|.+...   ..++..+...+       .++|.++|+||+|+.
T Consensus       126 g~D~viidT~G~~~~----------e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-------~~~~~ivv~NK~Dl~  185 (300)
T TIGR00750       126 GYDVIIVETVGVGQS----------EVDIANMADTFVVVTIPGT---GDDLQGIKAGL-------MEIADIYVVNKADGE  185 (300)
T ss_pred             CCCEEEEeCCCCchh----------hhHHHHhhceEEEEecCCc---cHHHHHHHHHH-------hhhccEEEEEccccc
Confidence            357999999996432          1234667899888865432   23333333322       458889999999998


Q ss_pred             CCC
Q 014655          406 EMY  408 (421)
Q Consensus       406 ~~~  408 (421)
                      ...
T Consensus       186 ~~~  188 (300)
T TIGR00750       186 GAT  188 (300)
T ss_pred             chh
Confidence            654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.23  E-value=2e-06  Score=77.90  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=42.0

Q ss_pred             ccceEEecCCcccccccccCc-hhHHHHHhcccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKG-LGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~g-l~~~fL~~i~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      ..++.++||||+.+....-.. +....+....+.|.+++|+|+..-.. ......+...++.        .-+||+||+|
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--------ad~ivlnk~d  157 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--------ADRILLNKTD  157 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--------CCEEEEeccc
Confidence            457899999999764321111 01122345567899999999864211 1122334444443        2378999999


Q ss_pred             C
Q 014655          404 L  404 (421)
Q Consensus       404 l  404 (421)
                      +
T Consensus       158 l  158 (158)
T cd03112         158 L  158 (158)
T ss_pred             C
Confidence            6

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.18  E-value=2.4e-06  Score=81.73  Aligned_cols=128  Identities=20%  Similarity=0.128  Sum_probs=88.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|.|+|.+|+||||+=..+.....+ -...++.|++...+++.+-..       --+.+||.-|..+.       -+.+
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-------l~LnlwDcGgqe~f-------men~   70 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-------LVLNLWDCGGQEEF-------MENY   70 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-------heeehhccCCcHHH-------HHHH
Confidence            47999999999999998776543222 133466677766665544321       24688999996432       1122


Q ss_pred             HH-----hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHH
Q 014655          352 LR-----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSR  414 (421)
Q Consensus       352 L~-----~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l  414 (421)
                      +.     .....++++||+|++..+...++......|+.+........+.+.+.|+|+...++....+
T Consensus        71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if  138 (295)
T KOG3886|consen   71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIF  138 (295)
T ss_pred             HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHH
Confidence            22     2356799999999999888888887777777665444566788999999998876655443

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.18  E-value=1e-05  Score=92.43  Aligned_cols=110  Identities=24%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             ChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC----------CccccccceEEecCCcccccccccCchhHHHHH
Q 014655          284 GKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----------GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       284 GKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----------~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|||||.+|.+........-+.|.+--...+......          ....-...+.|+||||+....       ....+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~-------~lr~~  545 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT-------SLRKR  545 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH-------HHHHh
Confidence            3999999999887654333344443222222221000          000001248999999964431       11123


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ....+|++++|+|+++....++.+.+ ..+..     .+.|+++|+||+|+..
T Consensus       546 g~~~aDivlLVVDa~~Gi~~qT~e~I-~~lk~-----~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        546 GGSLADLAVLVVDINEGFKPQTIEAI-NILRQ-----YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             hcccCCEEEEEEECcccCCHhHHHHH-HHHHH-----cCCCEEEEEECCCCcc
Confidence            35669999999999875444444433 34444     3589999999999964

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=1.2e-06  Score=79.38  Aligned_cols=126  Identities=21%  Similarity=0.228  Sum_probs=74.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCC---CCCCccccccceEEecCCcccccccccCc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGD---PTLGAEKYSSEATLADLPGLIEGAHLGKG  346 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~---~~~~~~~~~~~i~iiDtPGlie~a~~~~g  346 (421)
                      +++...+|..++||||+|...+..+...  .-.+|.  +-....+.+.   +.-....+...+++|||.|....    +.
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~--qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF----RS   82 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNT--QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF----RS   82 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccc--eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH----HH
Confidence            3456678999999999999988765211  001121  1111111111   11111123345899999998654    23


Q ss_pred             hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCC
Q 014655          347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMY  408 (421)
Q Consensus       347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~  408 (421)
                      +.-+|   .+.|=..++++|.++..++-..+.|+..|+...  ..+.| +|++.||+||.+..
T Consensus        83 LTTAF---fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA--YcE~PDivlcGNK~DL~~~R  140 (219)
T KOG0081|consen   83 LTTAF---FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA--YCENPDIVLCGNKADLEDQR  140 (219)
T ss_pred             HHHHH---HHhhccceEEEeccchHHHHHHHHHHHHHHHhh--ccCCCCEEEEcCccchhhhh
Confidence            33344   455667899999998766666666666665421  23444 88899999997653

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=1e-05  Score=81.39  Aligned_cols=123  Identities=24%  Similarity=0.304  Sum_probs=75.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC--Ccc-----CCCCeeeeccceeecC--CCCCCccccccceEEecCCcccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP--DIA-----DYPFTTLMPNLGRLDG--DPTLGAEKYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~--~ia-----~~pfTTl~p~~g~v~~--~~~~~~~~~~~~i~iiDtPGlie~a~~  343 (421)
                      .+|+++|...+|||||.++|+.-..  +..     -.-..|+|--...+..  ...++ ..-.-+++++|.||+.     
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLp-q~e~lq~tlvDCPGHa-----   81 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLP-QGEQLQFTLVDCPGHA-----   81 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccC-ccccceeEEEeCCCcH-----
Confidence            5799999999999999999975321  111     1223344432222221  11111 1112368999999963     


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHH-HHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTV-KEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l-~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                        ++.+..+...+-.|+.++|||+......+..+.| ..++       .-+..+||+||+|...+.++
T Consensus        82 --sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-------~c~klvvvinkid~lpE~qr  140 (522)
T KOG0461|consen   82 --SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-------LCKKLVVVINKIDVLPENQR  140 (522)
T ss_pred             --HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-------hccceEEEEeccccccchhh
Confidence              4566666666778999999999875443333322 2222       23668999999998876443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.16  E-value=4.4e-06  Score=84.71  Aligned_cols=62  Identities=13%  Similarity=0.152  Sum_probs=39.9

Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHH-HHHhcCCCCCCCCEEEEEeCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKE-ELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~-eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      +..++|+||+|+.+...          ..+..||++++|++....+   ++..+.. .++        ..-++|+||+|+
T Consensus       148 g~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~gd---~iq~~k~gi~E--------~aDIiVVNKaDl  206 (332)
T PRK09435        148 GYDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGAGD---ELQGIKKGIME--------LADLIVINKADG  206 (332)
T ss_pred             CCCEEEEECCCCccchh----------HHHHhCCEEEEEecCCchH---HHHHHHhhhhh--------hhheEEeehhcc
Confidence            35799999999875421          1256799999998744333   2332222 222        334899999998


Q ss_pred             CCCC
Q 014655          405 PEMY  408 (421)
Q Consensus       405 ~~~~  408 (421)
                      ....
T Consensus       207 ~~~~  210 (332)
T PRK09435        207 DNKT  210 (332)
T ss_pred             cchh
Confidence            7643

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.14  E-value=7.2e-06  Score=82.68  Aligned_cols=118  Identities=20%  Similarity=0.193  Sum_probs=71.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-c--------------------------------CCCCeeeeccceeecC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-A--------------------------------DYPFTTLMPNLGRLDG  316 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a--------------------------------~~pfTTl~p~~g~v~~  316 (421)
                      +...++..+|...-||||||-+|.-....+ .                                ...+.|++..+..+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            344567788999999999999986532221 0                                0123344433333222


Q ss_pred             CCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCC-CCE
Q 014655          317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPF  395 (421)
Q Consensus       317 ~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~-kP~  395 (421)
                      .        ..+|+|+||||+.+.       .+...--..-||+.|++||+......+.. ..-.....     ++ +.+
T Consensus        84 ~--------KRkFIiADTPGHeQY-------TRNMaTGASTadlAIlLVDAR~Gvl~QTr-RHs~I~sL-----LGIrhv  142 (431)
T COG2895          84 E--------KRKFIIADTPGHEQY-------TRNMATGASTADLAILLVDARKGVLEQTR-RHSFIASL-----LGIRHV  142 (431)
T ss_pred             c--------cceEEEecCCcHHHH-------hhhhhcccccccEEEEEEecchhhHHHhH-HHHHHHHH-----hCCcEE
Confidence            1        247999999998653       12222223679999999999765433322 22222222     23 557


Q ss_pred             EEEEeCCCCCCCC
Q 014655          396 IVVLNKIDLPEMY  408 (421)
Q Consensus       396 IIVlNK~Dl~~~~  408 (421)
                      ++.+|||||.+-.
T Consensus       143 vvAVNKmDLvdy~  155 (431)
T COG2895         143 VVAVNKMDLVDYS  155 (431)
T ss_pred             EEEEeeecccccC
Confidence            8899999999854

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=4e-06  Score=83.58  Aligned_cols=129  Identities=22%  Similarity=0.241  Sum_probs=81.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-----------c-cCCCCeeeeccce-----------eecCCCCCCccccccce
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-----------I-ADYPFTTLMPNLG-----------RLDGDPTLGAEKYSSEA  329 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-----------i-a~~pfTTl~p~~g-----------~v~~~~~~~~~~~~~~i  329 (421)
                      .+|++||+-.-|||||..||++-...           | -.|.-+++.....           .+.....  ...+-..+
T Consensus        11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~--~~~l~R~V   88 (415)
T COG5257          11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA--ETELVRRV   88 (415)
T ss_pred             eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC--CccEEEEE
Confidence            47999999999999999999984311           1 1122222111000           0110000  00123468


Q ss_pred             EEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          330 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       330 ~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .|+|.||+.-       |-...|.-..-.|..++||.++.+.|.-+-+..+-.|+...    -+.+|||-||+|+...++
T Consensus        89 SfVDaPGHe~-------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig----ik~iiIvQNKIDlV~~E~  157 (415)
T COG5257          89 SFVDAPGHET-------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG----IKNIIIVQNKIDLVSRER  157 (415)
T ss_pred             EEeeCCchHH-------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc----cceEEEEecccceecHHH
Confidence            9999999632       33334444455689999999999887766666666666543    366899999999998766


Q ss_pred             chHHH
Q 014655          410 DSSSR  414 (421)
Q Consensus       410 ~~~~l  414 (421)
                      .++..
T Consensus       158 AlE~y  162 (415)
T COG5257         158 ALENY  162 (415)
T ss_pred             HHHHH
Confidence            55443

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=5.9e-06  Score=73.48  Aligned_cols=123  Identities=20%  Similarity=0.138  Sum_probs=77.9

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce--eecCCCCCCccccccceEEecCCcccccccccCc
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  346 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g--~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g  346 (421)
                      ..-+++-.++|.-++|||.||..++..+ ..++.|.|. ....|  +++..      ....++.||||.|....      
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekk-fmadcphti-gvefgtriievs------gqkiklqiwdtagqerf------   73 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKK-FMADCPHTI-GVEFGTRIIEVS------GQKIKLQIWDTAGQERF------   73 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHH-HhhcCCccc-ceecceeEEEec------CcEEEEEEeecccHHHH------
Confidence            3456788899999999999999998765 234444332 11111  11111      11347899999997543      


Q ss_pred             hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                       ......+.+.+-..++|+|++.......+..|+...+.+-  ..+..++++.||.||....
T Consensus        74 -ravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt--npnt~i~lignkadle~qr  132 (215)
T KOG0097|consen   74 -RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLESQR  132 (215)
T ss_pred             -HHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC--CCceEEEEecchhhhhhcc
Confidence             2222344567778899999998776666555555444321  1234477889999997654

>PRK12288 GTPase RsgA; Reviewed

Probab=98.10  E-value=2.5e-06  Score=87.02  Aligned_cols=67  Identities=25%  Similarity=0.276  Sum_probs=45.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCCC-CccCCC-------CeeeeccceeecCCCCCCccccccceEEecCCcccccccc--
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--  343 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~p-------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--  343 (421)
                      -++|+|.||||||||||+|.+... .+++.+       .||....+..+..           ...++||||+.+..-.  
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-----------~~~liDTPGir~~~l~~~  275 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-----------GGDLIDSPGVREFGLWHL  275 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-----------CCEEEECCCCCcccCCCC
Confidence            378999999999999999997653 334443       3666555544432           2469999999875432  


Q ss_pred             -cCchhHHH
Q 014655          344 -GKGLGRNF  351 (421)
Q Consensus       344 -~~gl~~~f  351 (421)
                       ..++...|
T Consensus       276 ~~~~l~~~F  284 (347)
T PRK12288        276 EPEQVTQGF  284 (347)
T ss_pred             CHHHHHHhh
Confidence             23565555

>cd01859 MJ1464 MJ1464

Probab=98.09  E-value=4.6e-06  Score=74.47  Aligned_cols=55  Identities=33%  Similarity=0.498  Sum_probs=41.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL  337 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl  337 (421)
                      ..+|.++|.+|+|||||+|+|.+... .+.+.+.+|.......+           ...+.++||||+
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~~~DtpGi  156 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-----------TSKIYLLDTPGV  156 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-----------CCCEEEEECcCC
Confidence            35789999999999999999997654 34667777765432222           135899999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.07  E-value=1.5e-05  Score=80.75  Aligned_cols=130  Identities=18%  Similarity=0.150  Sum_probs=73.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc----cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc--
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG--  346 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i----a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g--  346 (421)
                      ..|.++|..|.|||||+|.|.+....-    .+.......+.+-.......+..+.+.-.++++||||+.+.-.- ..  
T Consensus        24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~~w  102 (373)
T COG5019          24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SKCW  102 (373)
T ss_pred             eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cccH
Confidence            578999999999999999999873211    11111111111111111111112233457999999999774321 11  


Q ss_pred             ------hhHHHHHhc--------------ccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          347 ------LGRNFLRHL--------------RRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       347 ------l~~~fL~~i--------------~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                            +...|-.++              .|.+++||.+-++... ..-+++. +..|..      ..-+|-|+-|+|..
T Consensus       103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~-Mk~ls~------~vNlIPVI~KaD~l  175 (373)
T COG5019         103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEA-MKRLSK------RVNLIPVIAKADTL  175 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHH-HHHHhc------ccCeeeeeeccccC
Confidence                  111221111              3568999999987532 2334443 333432      35578899999998


Q ss_pred             CCCCc
Q 014655          406 EMYDD  410 (421)
Q Consensus       406 ~~~e~  410 (421)
                      ..+|.
T Consensus       176 T~~El  180 (373)
T COG5019         176 TDDEL  180 (373)
T ss_pred             CHHHH
Confidence            77654

>PRK12289 GTPase RsgA; Reviewed

Probab=98.06  E-value=3.1e-06  Score=86.47  Aligned_cols=57  Identities=25%  Similarity=0.233  Sum_probs=41.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCC-CCccCCCC-------eeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK-PDIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  341 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pf-------TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a  341 (421)
                      .++|+|.||||||||||+|.... ..+.+.+.       ||.+..+..+.           ....++||||+.+..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-----------~g~~liDTPG~~~~~  238 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-----------NGGLLADTPGFNQPD  238 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-----------CCcEEEeCCCccccc
Confidence            37999999999999999999764 34456666       67666544332           124899999997654

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.7e-05  Score=85.59  Aligned_cols=129  Identities=23%  Similarity=0.225  Sum_probs=76.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeee-----eccce---eecC---------------------CC-C
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-----MPNLG---RLDG---------------------DP-T  319 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl-----~p~~g---~v~~---------------------~~-~  319 (421)
                      +...+|+|.|..|+||||++||+...+.-....-.||-     ....|   +.-.                     ++ .
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            55678999999999999999999887654433333331     00000   0000                     00 0


Q ss_pred             ---------CCc---cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC
Q 014655          320 ---------LGA---EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN  387 (421)
Q Consensus       320 ---------~~~---~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~  387 (421)
                               ++.   .-....+.++|.||+.-+..    +....-++...+|++|||+.+.+..+......+...-+   
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~---  259 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE---  259 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc---
Confidence                     000   00123689999999875532    22334466788999999999876544444333332222   


Q ss_pred             CCCCCCC-EEEEEeCCCCCCCCC
Q 014655          388 PDYLERP-FIVVLNKIDLPEMYD  409 (421)
Q Consensus       388 ~~l~~kP-~IIVlNK~Dl~~~~e  409 (421)
                          ++| +.|+.||+|...++.
T Consensus       260 ----~KpniFIlnnkwDasase~  278 (749)
T KOG0448|consen  260 ----EKPNIFILNNKWDASASEP  278 (749)
T ss_pred             ----cCCcEEEEechhhhhcccH
Confidence                355 566778889877643

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.03  E-value=2.9e-06  Score=86.54  Aligned_cols=73  Identities=26%  Similarity=0.409  Sum_probs=55.5

Q ss_pred             hcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655          255 VLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       255 ~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      ..|..++..    +|+....||+||+||+||||+||+|...+.. +++.|+-|..-..  |+.         +..+.++|
T Consensus       239 ~lgny~~~~----~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe--V~L---------dk~i~llD  303 (435)
T KOG2484|consen  239 VLGNYCRKG----ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE--VKL---------DKKIRLLD  303 (435)
T ss_pred             HhcCccccc----ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh--eec---------cCCceecc
Confidence            345555532    4788899999999999999999999998874 5788887765443  333         24799999


Q ss_pred             CCccccccc
Q 014655          334 LPGLIEGAH  342 (421)
Q Consensus       334 tPGlie~a~  342 (421)
                      .||++-...
T Consensus       304 sPgiv~~~~  312 (435)
T KOG2484|consen  304 SPGIVPPSI  312 (435)
T ss_pred             CCceeecCC
Confidence            999986543

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=2.3e-05  Score=81.04  Aligned_cols=116  Identities=22%  Similarity=0.128  Sum_probs=83.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      -|+..|.---|||||+.++++.....   ...-++|.|-.+...+..        +..+.++|.||+.+.       ...
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--------d~~~~fIDvpgh~~~-------i~~   66 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--------DGVMGFIDVPGHPDF-------ISN   66 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--------CCceEEeeCCCcHHH-------HHH
Confidence            36778999999999999999976544   335577887665555433        236899999998653       445


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+..+.-.|..++|||+.+....+..+ ....|..++    -+..+||+||+|+.+..+
T Consensus        67 miag~~~~d~alLvV~~deGl~~qtgE-hL~iLdllg----i~~giivltk~D~~d~~r  120 (447)
T COG3276          67 LLAGLGGIDYALLVVAADEGLMAQTGE-HLLILDLLG----IKNGIIVLTKADRVDEAR  120 (447)
T ss_pred             HHhhhcCCceEEEEEeCccCcchhhHH-HHHHHHhcC----CCceEEEEeccccccHHH
Confidence            566677889999999997766555544 334566543    233599999999997653

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=1.7e-05  Score=78.45  Aligned_cols=120  Identities=22%  Similarity=0.227  Sum_probs=75.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-----------ccC-----CCCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-----------IAD-----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  335 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-----------ia~-----~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP  335 (421)
                      -.+|+.+|.-+-|||||..+|+..-.+           +.+     .-+.|+.+....++..        ...+..+|.|
T Consensus        12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~--------~rhyahVDcP   83 (394)
T COG0050          12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA--------NRHYAHVDCP   83 (394)
T ss_pred             eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC--------CceEEeccCC
Confidence            358999999999999999999753210           111     1233443332222222        2468999999


Q ss_pred             cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCCchH
Q 014655          336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYDDSS  412 (421)
Q Consensus       336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e~~~  412 (421)
                      |+.+.       .+..+--....|..|+|+.+.+....+..+.++- .+.     ...| +++++||+|+.++.+.++
T Consensus        84 GHaDY-------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLl-arq-----vGvp~ivvflnK~Dmvdd~elle  148 (394)
T COG0050          84 GHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHILL-ARQ-----VGVPYIVVFLNKVDMVDDEELLE  148 (394)
T ss_pred             ChHHH-------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhh-hhh-----cCCcEEEEEEecccccCcHHHHH
Confidence            98664       3333444467799999999988654444433321 122     3565 677899999998766543

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.00  E-value=2.9e-06  Score=86.39  Aligned_cols=59  Identities=29%  Similarity=0.401  Sum_probs=48.1

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      .-+.|||||+||+||||+||+|...++. +++.|+.|..-++.++           -.+|.+||.||+.-.
T Consensus       306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-----------mkrIfLIDcPGvVyp  365 (572)
T KOG2423|consen  306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-----------MKRIFLIDCPGVVYP  365 (572)
T ss_pred             cceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-----------HhceeEecCCCccCC
Confidence            3457999999999999999999998874 5999999976555443           247999999999753

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.98  E-value=5.1e-06  Score=80.69  Aligned_cols=56  Identities=27%  Similarity=0.294  Sum_probs=39.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCC-CccC-------CCCeeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKP-DIAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  341 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~-~ia~-------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a  341 (421)
                      .++|+|.+|||||||+|+|.+... .+++       ...||.......+.            ...++||||+.+..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~------------~~~liDtPG~~~~~  185 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH------------GGLIADTPGFNEFG  185 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC------------CcEEEeCCCccccC
Confidence            688999999999999999997642 2222       23467665544431            23899999998743

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.82  E-value=1.9e-06  Score=83.99  Aligned_cols=65  Identities=15%  Similarity=0.139  Sum_probs=38.9

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++|+.|.|.-.          .=..-..-||.+++|+-+...+..+-++.=.-|+          .=++|+||+|+..
T Consensus       122 ~D~IiiETVGvGQ----------sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi~vVNKaD~~g  181 (266)
T PF03308_consen  122 FDVIIIETVGVGQ----------SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADIFVVNKADRPG  181 (266)
T ss_dssp             -SEEEEEEESSST----------HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEEE--SHHH
T ss_pred             CCEEEEeCCCCCc----------cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccEEEEeCCChHH
Confidence            4577877777533          3345567899999999887766544433221122          2389999999776


Q ss_pred             CCCch
Q 014655          407 MYDDS  411 (421)
Q Consensus       407 ~~e~~  411 (421)
                      ++...
T Consensus       182 A~~~~  186 (266)
T PF03308_consen  182 ADRTV  186 (266)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.81  E-value=2.4e-05  Score=78.02  Aligned_cols=56  Identities=30%  Similarity=0.326  Sum_probs=39.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC-CccCCC-------CeeeeccceeecCCCCCCccccccceEEecCCcccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE  339 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~p-------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie  339 (421)
                      ..++|+|.+|||||||+|+|.+... ...+.+       .||.......+.           ....++||||+.+
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-----------~~~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-----------GGGLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-----------CCcEEEECCCcCc
Confidence            4689999999999999999998653 223333       255554443332           2358999999985

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=4.2e-05  Score=83.04  Aligned_cols=124  Identities=24%  Similarity=0.246  Sum_probs=75.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC------C-Ccc--cc-ccceEEecCCcc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT------L-GAE--KY-SSEATLADLPGL  337 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~------~-~~~--~~-~~~i~iiDtPGl  337 (421)
                      .||. +-++++|+..+|||-||..|.+.++.-..+-+.|...-...+....+      + ...  .+ -..+.+|||||+
T Consensus       472 ~lRS-PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh  550 (1064)
T KOG1144|consen  472 NLRS-PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH  550 (1064)
T ss_pred             hcCC-ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence            3444 35788999999999999999887665555544443211111110000      0 000  00 124899999997


Q ss_pred             cccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       338 ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      .....    +..   +-...||+.|+|||+.+..-.+.++.+ +.|+.     .+.|+||.+||+|..
T Consensus       551 EsFtn----lRs---rgsslC~~aIlvvdImhGlepqtiESi-~lLR~-----rktpFivALNKiDRL  605 (1064)
T KOG1144|consen  551 ESFTN----LRS---RGSSLCDLAILVVDIMHGLEPQTIESI-NLLRM-----RKTPFIVALNKIDRL  605 (1064)
T ss_pred             hhhhh----hhh---ccccccceEEEEeehhccCCcchhHHH-HHHHh-----cCCCeEEeehhhhhh
Confidence            54421    111   224679999999999986544444443 34444     468999999999975

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.79  E-value=2.2e-05  Score=71.74  Aligned_cols=57  Identities=25%  Similarity=0.261  Sum_probs=35.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC-CCc---cC----CCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK-PDI---AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~i---a~----~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      ..++|+|.++||||||+|+|.... ..+   +.    -..||....+..+.           ....||||||+.+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-----------~g~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-----------DGGYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-----------TSEEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-----------CCcEEEECCCCCcc
Confidence            678999999999999999999873 222   11    12344443333331           35699999999764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.73  E-value=5.2e-05  Score=66.88  Aligned_cols=56  Identities=21%  Similarity=0.316  Sum_probs=41.1

Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++++++||++++|+|+..+....+ ..+.+.+....   .++|+++|+||+|+.+.+
T Consensus         3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~---~~k~~iivlNK~DL~~~~   58 (141)
T cd01857           3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD---PRKKNILLLNKADLLTEE   58 (141)
T ss_pred             HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc---CCCcEEEEEechhcCCHH
Confidence            457899999999999999987654333 24455555431   368999999999997544

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.00011  Score=74.99  Aligned_cols=127  Identities=17%  Similarity=0.149  Sum_probs=72.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-------cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-  344 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-  344 (421)
                      +.+.++|..+.|||||+|.|......-       ...+-.|.......+...    .+.+.-+++|+||||+.+.-... 
T Consensus        22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie----e~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE----ENGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec----CCCeEEeeEEeccCCCcccccccc
Confidence            478899999999999999998763211       011111211111111111    11234579999999997642210 


Q ss_pred             --C----chhHHHHHhc-------------ccCCEEEEEeeCCCC-CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          345 --K----GLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       345 --~----gl~~~fL~~i-------------~radvIl~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                        +    -+...|-+++             .|.+++||.|..+.. ...-+++.+ ..|.      ....+|-|+-|+|.
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~M-k~l~------~~vNiIPVI~KaD~  170 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFM-KKLS------KKVNLIPVIAKADT  170 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHH-HHHh------ccccccceeecccc
Confidence              0    1122222222             267999999998764 223344332 3333      24567889999999


Q ss_pred             CCCCCc
Q 014655          405 PEMYDD  410 (421)
Q Consensus       405 ~~~~e~  410 (421)
                      ...++.
T Consensus       171 lT~~El  176 (366)
T KOG2655|consen  171 LTKDEL  176 (366)
T ss_pred             CCHHHH
Confidence            887654

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.63  E-value=0.00013  Score=55.40  Aligned_cols=47  Identities=32%  Similarity=0.536  Sum_probs=30.9

Q ss_pred             HHhcccCCEEEEEeeCCC--CCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          352 LRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      |+|+  .++|+|++|+|.  +.+.++...|+++++..-   .++|+++|+||+|
T Consensus        10 L~hL--~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F---~~~P~i~V~nK~D   58 (58)
T PF06858_consen   10 LAHL--ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF---PNKPVIVVLNKID   58 (58)
T ss_dssp             GGGT---SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT---TTS-EEEEE--TT
T ss_pred             HHhh--cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc---CCCCEEEEEeccC
Confidence            4454  478999999987  355677777888887642   3799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=97.63  E-value=0.00037  Score=67.40  Aligned_cols=125  Identities=18%  Similarity=0.245  Sum_probs=72.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-------c-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-------I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  344 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-------i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~  344 (421)
                      +.|.+||..+.|||||+|.|..++..       . .++|-||......++-...     ...-+++++||||+-+.-...
T Consensus        47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~-----gVklkltviDTPGfGDqInN~  121 (336)
T KOG1547|consen   47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEK-----GVKLKLTVIDTPGFGDQINND  121 (336)
T ss_pred             eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeec-----ceEEEEEEecCCCcccccCcc
Confidence            57999999999999999999765421       1 2566666544333332221     123479999999986532110


Q ss_pred             C---c----hhH---HHHH---------hc--ccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655          345 K---G----LGR---NFLR---------HL--RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKI  402 (421)
Q Consensus       345 ~---g----l~~---~fL~---------~i--~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~  402 (421)
                      .   -    +..   .||+         +|  -|.++++|.+.++.... .-+++.+...-+-       ..+|-|+-|+
T Consensus       122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-------vNvvPVIaka  194 (336)
T KOG1547|consen  122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-------VNVVPVIAKA  194 (336)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-------heeeeeEeec
Confidence            0   0    111   1221         22  24678999998876321 2344433332221       3467799999


Q ss_pred             CCCCCCC
Q 014655          403 DLPEMYD  409 (421)
Q Consensus       403 Dl~~~~e  409 (421)
                      |-..-+|
T Consensus       195 DtlTleE  201 (336)
T KOG1547|consen  195 DTLTLEE  201 (336)
T ss_pred             ccccHHH
Confidence            9766544

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.62  E-value=5.8e-05  Score=75.18  Aligned_cols=65  Identities=25%  Similarity=0.308  Sum_probs=46.4

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~  343 (421)
                      .-..|.+||.||+|||||+|++....      ..+..+|+.|......+-...        ...+.++||||++.....
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~--------rp~vy~iDTPGil~P~I~  212 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH--------RPPVYLIDTPGILVPSIV  212 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc--------CCceEEecCCCcCCCCCC
Confidence            34578999999999999999986543      234788998876544221111        236899999999876543

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.58  E-value=0.00017  Score=84.40  Aligned_cols=132  Identities=23%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc----ccC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----LGK  345 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~----~~~  345 (421)
                      -.++=..+||.|++||||||+.- +-+....+....+  ...+ +..... -+-++..+.+++||+|..-...    .+.
T Consensus       109 Y~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~--~~~~-~~~t~~-c~wwf~~~avliDtaG~y~~~~~~~~~~~  183 (1169)
T TIGR03348       109 YDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAA--ALRG-VGGTRN-CDWWFTDEAVLIDTAGRYTTQDSDPEEDA  183 (1169)
T ss_pred             hcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccc--cccC-CCCCcc-cceEecCCEEEEcCCCccccCCCcccccH
Confidence            34455689999999999999987 3332111110000  0000 000000 0113557889999999653211    233


Q ss_pred             chhHHHHHhcc------cCCEEEEEeeCCCCC--Chhh----HHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCC
Q 014655          346 GLGRNFLRHLR------RTRLLVHVIDAAAEN--PVND----YRTVKEELRMYNPDY-LERPFIVVLNKIDLPE  406 (421)
Q Consensus       346 gl~~~fL~~i~------radvIl~VvD~s~~~--~~~~----~~~l~~eL~~~~~~l-~~kP~IIVlNK~Dl~~  406 (421)
                      .....||..+.      -.+.||++||+.+-.  ..++    ...++.-|.+....+ ...|+.||+||||+..
T Consensus       184 ~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       184 AAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            44566777663      369999999987531  1111    123333333222111 4689999999999874

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.57  E-value=5.9e-05  Score=74.89  Aligned_cols=57  Identities=32%  Similarity=0.260  Sum_probs=38.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-ccC-------CCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-IAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~-------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      ..++++|.+|||||||+|+|++.... ...       -..||.......+.           ....++||||+.+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~-----------~~~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP-----------GGGLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC-----------CCCEEEECCCCCcc
Confidence            46899999999999999999986532 121       22345444332221           13479999999763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.56  E-value=0.00056  Score=61.42  Aligned_cols=58  Identities=21%  Similarity=0.249  Sum_probs=38.7

Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      ...+.|+||||....          +...+..||.+++|+..+   ..+.+..++-+.       ....-++|+||+|
T Consensus        91 ~~D~iiIDtaG~~~~----------~~~~~~~Ad~~ivv~tpe---~~D~y~~~k~~~-------~~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS----------EVDIASMADTTVVVMAPG---AGDDIQAIKAGI-------MEIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh----------hhhHHHhCCEEEEEECCC---chhHHHHhhhhH-------hhhcCEEEEeCCC
Confidence            357999999996432          345678899999998776   233444333322       2345689999998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=97.56  E-value=7e-05  Score=67.77  Aligned_cols=112  Identities=23%  Similarity=0.272  Sum_probs=73.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+++|.+..|||||+-...+.+-.. .+..++ +.-....+...      ...-.+.+||.-|..+           |
T Consensus        21 lkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~------~t~IsfSIwdlgG~~~-----------~   82 (205)
T KOG1673|consen   21 LKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIR------GTDISFSIWDLGGQRE-----------F   82 (205)
T ss_pred             EEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEec------ceEEEEEEEecCCcHh-----------h
Confidence            489999999999999999988765321 111111 00000011111      0123689999999643           4


Q ss_pred             HHhc----ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          352 LRHL----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       352 L~~i----~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ..++    ..+-+|+|++|.+.+.+......|....+.++.  ...| |+|.+|-|+.
T Consensus        83 ~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiP-ilvGTKyD~f  137 (205)
T KOG1673|consen   83 INMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIP-ILVGTKYDLF  137 (205)
T ss_pred             hccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC--ccce-EEeccchHhh
Confidence            4554    456789999999998888888878777776553  4566 6679998863

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.56  E-value=0.00041  Score=73.44  Aligned_cols=133  Identities=23%  Similarity=0.277  Sum_probs=79.0

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCC------cccc------------------
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLG------AEKY------------------  325 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~------~~~~------------------  325 (421)
                      .+++|.+||.-.|||||.|..+..++... ..-..-|..|.-.++.-.|..-      +..|                  
T Consensus       307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R  386 (980)
T KOG0447|consen  307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR  386 (980)
T ss_pred             cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence            35689999999999999999998776433 2222223333222221111000      0000                  


Q ss_pred             ------------------------ccceEEecCCcccccc-----cccC-chhHHHHHhcccCCEEEEEeeCCCCCChhh
Q 014655          326 ------------------------SSEATLADLPGLIEGA-----HLGK-GLGRNFLRHLRRTRLLVHVIDAAAENPVND  375 (421)
Q Consensus       326 ------------------------~~~i~iiDtPGlie~a-----~~~~-gl~~~fL~~i~radvIl~VvD~s~~~~~~~  375 (421)
                                              -.+++++|.||+|..-     .+.+ .+......|++..++||++|--.+-+.  +
T Consensus       387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA--E  464 (980)
T KOG0447|consen  387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA--E  464 (980)
T ss_pred             HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch--h
Confidence                                    0248999999999742     2222 233344667889999999985333222  2


Q ss_pred             HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          376 YRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       376 ~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      -..+...+...+|  .++..|+|++|.|+.+.
T Consensus       465 RSnVTDLVsq~DP--~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  465 RSIVTDLVSQMDP--HGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             hhhHHHHHHhcCC--CCCeeEEEEeecchhhh
Confidence            2233444444554  67889999999999764

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.54  E-value=0.00012  Score=68.90  Aligned_cols=26  Identities=19%  Similarity=0.411  Sum_probs=22.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..++.|+|+|++|||||||++++...
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.47  E-value=6.9e-05  Score=74.40  Aligned_cols=64  Identities=16%  Similarity=0.196  Sum_probs=39.6

Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ++.++|+.|-|.-+.          =..-.+-+|.+++|.=+...+..+-   ++.-+       .+.-=|+|+||+|+.
T Consensus       143 G~DvIIVETVGvGQs----------ev~I~~~aDt~~~v~~pg~GD~~Q~---iK~Gi-------mEiaDi~vINKaD~~  202 (323)
T COG1703         143 GYDVIIVETVGVGQS----------EVDIANMADTFLVVMIPGAGDDLQG---IKAGI-------MEIADIIVINKADRK  202 (323)
T ss_pred             CCCEEEEEecCCCcc----------hhHHhhhcceEEEEecCCCCcHHHH---HHhhh-------hhhhheeeEeccChh
Confidence            346788888876432          2244567899888887665554333   33222       223349999999977


Q ss_pred             CCCC
Q 014655          406 EMYD  409 (421)
Q Consensus       406 ~~~e  409 (421)
                      +++.
T Consensus       203 ~A~~  206 (323)
T COG1703         203 GAEK  206 (323)
T ss_pred             hHHH
Confidence            6643

>cd01858 NGP_1 NGP-1

Probab=97.46  E-value=0.00019  Score=64.23  Aligned_cols=53  Identities=25%  Similarity=0.362  Sum_probs=37.9

Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ++.++.+|++++|+|++.+.... ...+.+.|...   ..++|+++|+||+|+.+.+
T Consensus         3 ~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~   55 (157)
T cd01858           3 YKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE---KPHKHLIFVLNKCDLVPTW   55 (157)
T ss_pred             hHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc---cCCCCEEEEEEchhcCCHH
Confidence            46789999999999998754322 23455555542   1358999999999997654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.00025  Score=75.32  Aligned_cols=112  Identities=19%  Similarity=0.212  Sum_probs=72.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .-|++||+|++|||||++.|.+.-..      .|++...|-+....     .-..++++...|.-+          .++.
T Consensus        70 fIvavvGPpGtGKsTLirSlVrr~tk------~ti~~i~GPiTvvs-----gK~RRiTflEcp~Dl----------~~mi  128 (1077)
T COG5192          70 FIVAVVGPPGTGKSTLIRSLVRRFTK------QTIDEIRGPITVVS-----GKTRRITFLECPSDL----------HQMI  128 (1077)
T ss_pred             eEEEeecCCCCChhHHHHHHHHHHHH------hhhhccCCceEEee-----cceeEEEEEeChHHH----------HHHH
Confidence            35789999999999999999875321      23333333222111     012479999998422          2455


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCCch
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e~~  411 (421)
                      ....-||++|++||..-..-.+.++.| +.|..     ..-| ++-|++..|+-....-+
T Consensus       129 DvaKIaDLVlLlIdgnfGfEMETmEFL-nil~~-----HGmPrvlgV~ThlDlfk~~stL  182 (1077)
T COG5192         129 DVAKIADLVLLLIDGNFGFEMETMEFL-NILIS-----HGMPRVLGVVTHLDLFKNPSTL  182 (1077)
T ss_pred             hHHHhhheeEEEeccccCceehHHHHH-HHHhh-----cCCCceEEEEeecccccChHHH
Confidence            666778999999999876555665544 34443     2344 67799999998765433

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.00026  Score=77.27  Aligned_cols=119  Identities=16%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccC-CCCeee------eccce--eecCCCCCCccccccceEEecCCccccccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPFTTL------MPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-~pfTTl------~p~~g--~v~~~~~~~~~~~~~~i~iiDtPGlie~a~  342 (421)
                      +..|.+|-+-.-|||||...|......|+. ..++-+      +.+..  +++...+ ....-+..+.+||+||+++..+
T Consensus         9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~i-s~~~~~~~~nlidspghvdf~s   87 (887)
T KOG0467|consen    9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAI-SLLHKDYLINLIDSPGHVDFSS   87 (887)
T ss_pred             eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccc-ccccCceEEEEecCCCccchhh
Confidence            457889999999999999999877654422 121111      11110  0000000 0000124689999999998744


Q ss_pred             ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      +       .-....-||..+++||+......+.+..+++....      +...++|+||+|.
T Consensus        88 e-------vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~------~~~~~lvinkidr  136 (887)
T KOG0467|consen   88 E-------VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE------GLKPILVINKIDR  136 (887)
T ss_pred             h-------hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc------cCceEEEEehhhh
Confidence            3       22345678999999999888777777777766553      4667999999994

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.42  E-value=0.00047  Score=72.23  Aligned_cols=69  Identities=13%  Similarity=0.160  Sum_probs=39.7

Q ss_pred             cceEEecCCcccccccccCchhHHHHH--hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~--~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++|+||||....   +..+-....+  .....+.+++|+|++...  +...    ..+.|..  .-.+.-+|+||+|.
T Consensus       183 ~DvViIDTaGr~~~---d~~lm~El~~i~~~~~p~e~lLVlda~~Gq--~a~~----~a~~F~~--~~~~~g~IlTKlD~  251 (429)
T TIGR01425       183 FDIIIVDTSGRHKQ---EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ--AAEA----QAKAFKD--SVDVGSVIITKLDG  251 (429)
T ss_pred             CCEEEEECCCCCcc---hHHHHHHHHHHhhhcCCcEEEEEeccccCh--hHHH----HHHHHHh--ccCCcEEEEECccC
Confidence            57999999996543   1222222211  223468899999987542  1211    2233321  12456788999997


Q ss_pred             CC
Q 014655          405 PE  406 (421)
Q Consensus       405 ~~  406 (421)
                      ..
T Consensus       252 ~a  253 (429)
T TIGR01425       252 HA  253 (429)
T ss_pred             CC
Confidence            54

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=97.40  E-value=0.00089  Score=71.53  Aligned_cols=120  Identities=21%  Similarity=0.165  Sum_probs=71.3

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      |.+..+.++|..|+|||.||+++.+....- .+..++...+.  ++.....   ....-+.+-|++-. +.         
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~a--vn~v~~~---g~~k~LiL~ei~~~-~~---------  486 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYA--VNSVEVK---GQQKYLILREIGED-DQ---------  486 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCcee--eeeeeec---cccceEEEeecCcc-cc---------
Confidence            456678999999999999999999865433 22222221111  1100000   00123555555543 11         


Q ss_pred             HHHHhc-ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 NFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ~fL~~i-~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .++..- ..||++++|+|.+.+...+-   +..+...|... ...|+++|+.|+|+.+..+
T Consensus       487 ~~l~~ke~~cDv~~~~YDsS~p~sf~~---~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q  543 (625)
T KOG1707|consen  487 DFLTSKEAACDVACLVYDSSNPRSFEY---LAEVYNKYFDL-YKIPCLMVATKADLDEVPQ  543 (625)
T ss_pred             ccccCccceeeeEEEecccCCchHHHH---HHHHHHHhhhc-cCCceEEEeeccccchhhh
Confidence            111111 57999999999997665433   44444444333 6799999999999977653

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.35  E-value=0.00013  Score=78.10  Aligned_cols=128  Identities=23%  Similarity=0.194  Sum_probs=79.3

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCC---CccC--CCCeeeec-----cceeecCCCCCCccccccceEEecCCcc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP---DIAD--YPFTTLMP-----NLGRLDGDPTLGAEKYSSEATLADLPGL  337 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~---~ia~--~pfTTl~p-----~~g~v~~~~~~~~~~~~~~i~iiDtPGl  337 (421)
                      .++.+..|+++-+-.|||||+-.++.--..   .+.+  .-.++.+.     ..|+..-....-..|-...+.+|||||+
T Consensus        35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH  114 (721)
T KOG0465|consen   35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH  114 (721)
T ss_pred             chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence            455778899999999999999998753211   1111  01111110     1111000000000122458999999999


Q ss_pred             cccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       338 ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ++..-+       ..+.++-.|..++|+|+.... +.+...++..+..|     +.|.|..+||+|...+.
T Consensus       115 vDFT~E-------VeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~ry-----~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  115 VDFTFE-------VERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKRY-----NVPRICFINKMDRMGAS  172 (721)
T ss_pred             eeEEEE-------ehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHhc-----CCCeEEEEehhhhcCCC
Confidence            986432       224455568889999988765 34446677778876     48999999999998765

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.31  E-value=0.0011  Score=60.15  Aligned_cols=73  Identities=15%  Similarity=0.074  Sum_probs=40.5

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..+.++||||........-..-..+ ......+.+++|+|+..  ..+..+.+...++.     .+ ..-+|+||+|...
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l-~~~~~~~~~~lVv~~~~--~~~~~~~~~~~~~~-----~~-~~~viltk~D~~~  153 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKI-KRVVKPDEVLLVVDAMT--GQDAVNQAKAFNEA-----LG-ITGVILTKLDGDA  153 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHH-HhhcCCCeEEEEEECCC--ChHHHHHHHHHHhh-----CC-CCEEEEECCcCCC
Confidence            4689999999753210000001122 22345899999999853  23333333333332     12 3577889999876


Q ss_pred             CC
Q 014655          407 MY  408 (421)
Q Consensus       407 ~~  408 (421)
                      ..
T Consensus       154 ~~  155 (173)
T cd03115         154 RG  155 (173)
T ss_pred             Cc
Confidence            43

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.31  E-value=0.00076  Score=68.15  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=20.0

Q ss_pred             hceecccCCCCCChhHHHHHHhc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..-|+|+|++|+||||++..|..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~  136 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAH  136 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34689999999999999999865

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.31  E-value=0.0001  Score=67.84  Aligned_cols=74  Identities=24%  Similarity=0.323  Sum_probs=39.8

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ..+.++.+.|+.+.... . +....+...-..+.++.|+|+..-....+. ..+...++        ..-+||+||+|+.
T Consensus        85 ~d~IiIE~sG~a~p~~l-~-~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~--------~ADvIvlnK~D~~  154 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPL-I-LQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA--------FADVIVLNKIDLV  154 (178)
T ss_dssp             -SEEEEEEECSSGGGGH-H-HHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC--------T-SEEEEE-GGGH
T ss_pred             cCEEEECCccccccchh-h-hccccccccccccceeEEeccccccccccchhhhhhcch--------hcCEEEEeccccC
Confidence            46889999997654322 0 011222333456889999999652111122 22333332        2238899999998


Q ss_pred             CCCCc
Q 014655          406 EMYDD  410 (421)
Q Consensus       406 ~~~e~  410 (421)
                      +.++.
T Consensus       155 ~~~~~  159 (178)
T PF02492_consen  155 SDEQK  159 (178)
T ss_dssp             HHH--
T ss_pred             ChhhH
Confidence            77643

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.30  E-value=6.4e-05  Score=74.83  Aligned_cols=28  Identities=32%  Similarity=0.370  Sum_probs=23.4

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-+.+.-|.|+|.|||||||||+.+.+.
T Consensus       100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~  127 (290)
T PRK10463        100 AARKQLVLNLVSSPGSGKTTLLTETLMR  127 (290)
T ss_pred             HhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3355678999999999999999988764

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.23  E-value=0.00047  Score=70.27  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .++-..|.|+-+||||||||.+...
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         3 KIPVTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc
Confidence            3455678899999999999999754

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.23  E-value=0.0003  Score=70.13  Aligned_cols=67  Identities=30%  Similarity=0.307  Sum_probs=42.4

Q ss_pred             eecccCCCCCChhHHHHHHhcCC-CCc---c----CCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc--cc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK-PDI---A----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HL  343 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~-~~i---a----~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a--~~  343 (421)
                      -.+|+|.+++|||||+|+|.... .++   +    .--.||....+..+..           .=.|+||||+.+-.  +.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-----------gG~iiDTPGf~~~~l~~~  234 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-----------GGWIIDTPGFRSLGLAHL  234 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-----------CCEEEeCCCCCccCcccC
Confidence            46899999999999999998642 222   1    1234555555444421           23789999997642  22


Q ss_pred             -cCchhHHH
Q 014655          344 -GKGLGRNF  351 (421)
Q Consensus       344 -~~gl~~~f  351 (421)
                       .+.+...|
T Consensus       235 ~~e~l~~~F  243 (301)
T COG1162         235 EPEDLVQAF  243 (301)
T ss_pred             CHHHHHHHh
Confidence             33455555

>cd01859 MJ1464 MJ1464

Probab=97.21  E-value=0.00066  Score=60.46  Aligned_cols=52  Identities=21%  Similarity=0.381  Sum_probs=35.7

Q ss_pred             HHHHhccc-CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRR-TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~r-advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++|+.+ ||++++|+|++++....+. .+...+..     .++|+++|+||+|+.+.
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~-----~~~p~iiv~NK~Dl~~~   56 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE-----LGKKLLIVLNKADLVPK   56 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh-----CCCcEEEEEEhHHhCCH
Confidence            34566655 9999999999875433332 23333332     35899999999999653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.19  E-value=0.00026  Score=67.24  Aligned_cols=77  Identities=26%  Similarity=0.270  Sum_probs=46.1

Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccC---CEEEEEeeCCCCCChhhHHH---HHHHHHhcCCCCCCCCEEEEE
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRT---RLLVHVIDAAAENPVNDYRT---VKEELRMYNPDYLERPFIVVL  399 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~ra---dvIl~VvD~s~~~~~~~~~~---l~~eL~~~~~~l~~kP~IIVl  399 (421)
                      ...+.+.|.||.||-..- .-+-..+.+|+.+-   =.++|++|+.=  .....+.   .+..|...  ...+.|.|=|+
T Consensus        97 eddylifDcPGQIELytH-~pVm~~iv~hl~~~~F~~c~Vylldsqf--~vD~~KfiSG~lsAlsAM--i~lE~P~INvl  171 (273)
T KOG1534|consen   97 EDDYLIFDCPGQIELYTH-LPVMPQIVEHLKQWNFNVCVVYLLDSQF--LVDSTKFISGCLSALSAM--ISLEVPHINVL  171 (273)
T ss_pred             cCCEEEEeCCCeeEEeec-ChhHHHHHHHHhcccCceeEEEEeccch--hhhHHHHHHHHHHHHHHH--HHhcCcchhhh
Confidence            457999999999984321 22344566777652   24678887532  1111122   22222221  12579999999


Q ss_pred             eCCCCCCC
Q 014655          400 NKIDLPEM  407 (421)
Q Consensus       400 NK~Dl~~~  407 (421)
                      +|+||...
T Consensus       172 sKMDLlk~  179 (273)
T KOG1534|consen  172 SKMDLLKD  179 (273)
T ss_pred             hHHHHhhh
Confidence            99999876

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.16  E-value=0.00049  Score=66.36  Aligned_cols=80  Identities=26%  Similarity=0.348  Sum_probs=44.3

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCE---EEEEeeCCC-CCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRL---LVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  402 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radv---Il~VvD~s~-~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~  402 (421)
                      ..+.+.|.||..|-......+. ..++.+++-|.   .+.++|+-- .+|..-+..++-.|....  ..+-|.|=|+.|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~-~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl--~melphVNvlSK~  173 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLN-KIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML--HMELPHVNVLSKA  173 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHH-HHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH--hhcccchhhhhHh
Confidence            4689999999998543222233 33455555554   455555421 233222233322222211  1467899999999


Q ss_pred             CCCCCCC
Q 014655          403 DLPEMYD  409 (421)
Q Consensus       403 Dl~~~~e  409 (421)
                      |+....+
T Consensus       174 Dl~~~yg  180 (290)
T KOG1533|consen  174 DLLKKYG  180 (290)
T ss_pred             HHHHhhc
Confidence            9976544

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.14  E-value=0.0016  Score=64.33  Aligned_cols=73  Identities=16%  Similarity=0.101  Sum_probs=41.3

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcc-----cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~-----radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                      ..++|+||||..........--..+.+.++     .+|.+++|+|++.  ..+.+.......+..      .+.-+|+||
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~------~~~g~IlTK  226 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV------GLTGIILTK  226 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC------CCCEEEEEc
Confidence            479999999976531110000112223322     2788999999974  233443333333221      246789999


Q ss_pred             CCCCCC
Q 014655          402 IDLPEM  407 (421)
Q Consensus       402 ~Dl~~~  407 (421)
                      +|....
T Consensus       227 lDe~~~  232 (272)
T TIGR00064       227 LDGTAK  232 (272)
T ss_pred             cCCCCC
Confidence            998654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=7e-05  Score=76.90  Aligned_cols=124  Identities=21%  Similarity=0.185  Sum_probs=73.7

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc---cC-CCCeee------eccceeecCCCCCCccccccceEEecCCccccc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI---AD-YPFTTL------MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~-~pfTTl------~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      .+.+|+++-.-.|||||...+|.--.-.+   .+ -.+.|.      .-..|+......+..+|-+.++.++||||+.+.
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            34578999999999999988864211111   00 001111      001111100111112244678999999999876


Q ss_pred             ccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          341 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       341 a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .-+       .-+.++--|.++.|+|++.....+.+..|+ .-..     .+.|.++.+||||...+
T Consensus       116 ~le-------verclrvldgavav~dasagve~qtltvwr-qadk-----~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  116 RLE-------VERCLRVLDGAVAVFDASAGVEAQTLTVWR-QADK-----FKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEE-------HHHHHHHhcCeEEEEeccCCcccceeeeeh-hccc-----cCCchhhhhhhhhhhhh
Confidence            322       234455558899999999876555544333 3333     57899999999998765

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.06  E-value=0.0017  Score=65.70  Aligned_cols=71  Identities=25%  Similarity=0.251  Sum_probs=43.4

Q ss_pred             cceEEecCCcccccccccCchhHHHHH-----hcccCCEEEEEeeCCCCCChh--hHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLR-----HLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVL  399 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~-----~i~radvIl~VvD~s~~~~~~--~~~~l~~eL~~~~~~l~~kP~IIVl  399 (421)
                      ....+|.|-|+-+..    .+...|+.     ..-+-|.++-|||+.+-....  ..+...+.+..        .=+||+
T Consensus        85 ~D~ivIEtTGlA~P~----pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~--------AD~ivl  152 (323)
T COG0523          85 PDRLVIETTGLADPA----PVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF--------ADVIVL  152 (323)
T ss_pred             CCEEEEeCCCCCCCH----HHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh--------CcEEEE
Confidence            357889999987642    23334433     123457899999998632211  12333334432        238999


Q ss_pred             eCCCCCCCCC
Q 014655          400 NKIDLPEMYD  409 (421)
Q Consensus       400 NK~Dl~~~~e  409 (421)
                      ||.|+.++++
T Consensus       153 NK~Dlv~~~~  162 (323)
T COG0523         153 NKTDLVDAEE  162 (323)
T ss_pred             ecccCCCHHH
Confidence            9999998775

>TIGR00101 ureG urease accessory protein UreG

Probab=97.05  E-value=0.0018  Score=60.88  Aligned_cols=23  Identities=35%  Similarity=0.642  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|++++|||||++++.+.
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            37899999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.0016  Score=60.84  Aligned_cols=119  Identities=18%  Similarity=0.191  Sum_probs=76.3

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCee---eeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT---LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT---l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      ...++.++|.-+.||+|++++....+... .|+-|+   ..|....-+..        ..++.+|||.|.....    ++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~-~y~at~Gv~~~pl~f~tn~g--------~irf~~wdtagqEk~g----gl   75 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEK-TYPATLGVEVHPLLFDTNRG--------QIRFNVWDTAGQEKKG----GL   75 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhccccee-cccCcceeEEeeeeeecccC--------cEEEEeeecccceeec----cc
Confidence            34678999999999999999987655322 222222   11111111100        1478999999976532    11


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..  -.+|. ..+.++++|+....+......|.+.+....   .+.|++++.||.|....+
T Consensus        76 rd--gyyI~-~qcAiimFdVtsr~t~~n~~rwhrd~~rv~---~NiPiv~cGNKvDi~~r~  130 (216)
T KOG0096|consen   76 RD--GYYIQ-GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR---ENIPIVLCGNKVDIKARK  130 (216)
T ss_pred             cc--ccEEe-cceeEEEeeeeehhhhhcchHHHHHHHHHh---cCCCeeeeccceeccccc
Confidence            11  12333 346678899998877777777777776654   358999999999987654

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.04  E-value=0.0016  Score=65.91  Aligned_cols=127  Identities=23%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-----------c--cC---CCCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-----------I--AD---YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  336 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-----------i--a~---~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG  336 (421)
                      .+|+-+|...-|||||-.+|+..-..           |  ++   --+.|+  +..++.|...      ...+.=+|.||
T Consensus        55 vNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITI--n~aHveYeTa------~RhYaH~DCPG  126 (449)
T KOG0460|consen   55 VNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITI--NAAHVEYETA------KRHYAHTDCPG  126 (449)
T ss_pred             ccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceE--eeeeeeeecc------ccccccCCCCc
Confidence            37899999999999999999863211           1  11   112232  2234444322      23577899999


Q ss_pred             ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCC-CCEEEEEeCCCCCCCCCch----
Q 014655          337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDLPEMYDDS----  411 (421)
Q Consensus       337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~-kP~IIVlNK~Dl~~~~e~~----  411 (421)
                      +.+.       .....--...-|..|+||.+++....+.-+.|+-. ++     .. ..+++.+||.|++++.+.+    
T Consensus       127 HADY-------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLA-rQ-----VGV~~ivvfiNKvD~V~d~e~leLVE  193 (449)
T KOG0460|consen  127 HADY-------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLA-RQ-----VGVKHIVVFINKVDLVDDPEMLELVE  193 (449)
T ss_pred             hHHH-------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHH-HH-----cCCceEEEEEecccccCCHHHHHHHH
Confidence            8653       11122222556899999999987665555444322 22     23 4478889999999766543    


Q ss_pred             ----HHHHhCCCC
Q 014655          412 ----SSRQGIGFN  420 (421)
Q Consensus       412 ----~~l~~lGl~  420 (421)
                          +.|..+|++
T Consensus       194 mE~RElLse~gf~  206 (449)
T KOG0460|consen  194 MEIRELLSEFGFD  206 (449)
T ss_pred             HHHHHHHHHcCCC
Confidence                445566654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.03  E-value=0.0004  Score=65.32  Aligned_cols=72  Identities=15%  Similarity=0.064  Sum_probs=40.6

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++++||||......+...--..+++.+ ..+-+++|+|++..  .++++.+....+.+      .+-=+|++|.|...
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~------~~~~lIlTKlDet~  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAF------GIDGLILTKLDETA  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHS------STCEEEEESTTSSS
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccC--hHHHHHHHHHhhcc------cCceEEEEeecCCC
Confidence            36999999997654221111122344444 46788999999753  33444343333332      12356799999765


Q ss_pred             C
Q 014655          407 M  407 (421)
Q Consensus       407 ~  407 (421)
                      .
T Consensus       155 ~  155 (196)
T PF00448_consen  155 R  155 (196)
T ss_dssp             T
T ss_pred             C
Confidence            4

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.02  E-value=0.002  Score=66.89  Aligned_cols=70  Identities=13%  Similarity=0.141  Sum_probs=40.3

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhc--ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i--~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++|+||||.....   ..+.....+.+  ...+.+++|+|++..  .   ..+.+.++.|..  . ..-=+|+||+|.
T Consensus       321 ~DvVLIDTaGRs~kd---~~lm~EL~~~lk~~~PdevlLVLsATtk--~---~d~~~i~~~F~~--~-~idglI~TKLDE  389 (436)
T PRK11889        321 VDYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLTLSASMK--S---KDMIEIITNFKD--I-HIDGIVFTKFDE  389 (436)
T ss_pred             CCEEEEeCccccCcC---HHHHHHHHHHHhhcCCCeEEEEECCccC--h---HHHHHHHHHhcC--C-CCCEEEEEcccC
Confidence            479999999975432   22222222222  234678889998642  1   233445555553  1 234678999997


Q ss_pred             CCC
Q 014655          405 PEM  407 (421)
Q Consensus       405 ~~~  407 (421)
                      ...
T Consensus       390 T~k  392 (436)
T PRK11889        390 TAS  392 (436)
T ss_pred             CCC
Confidence            654

>cd01855 YqeH YqeH

Probab=97.01  E-value=0.0015  Score=60.29  Aligned_cols=52  Identities=27%  Similarity=0.160  Sum_probs=34.7

Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .....++++|++++|+|+++...... ..+    ..   ...++|+++|+||+|+.....
T Consensus        27 ~l~~~~~~ad~il~VvD~~~~~~~~~-~~l----~~---~~~~~~~ilV~NK~Dl~~~~~   78 (190)
T cd01855          27 LLSSISPKKALVVHVVDIFDFPGSLI-PRL----RL---FGGNNPVILVGNKIDLLPKDK   78 (190)
T ss_pred             HHHhcccCCcEEEEEEECccCCCccc-hhH----HH---hcCCCcEEEEEEchhcCCCCC
Confidence            34556789999999999987542211 112    11   114689999999999975443

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.97  E-value=0.0015  Score=67.44  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-.++|+|++||||||++..|...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999753

>cd01856 YlqF YlqF

Probab=96.97  E-value=0.00093  Score=60.83  Aligned_cols=51  Identities=29%  Similarity=0.378  Sum_probs=35.8

Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ....+.++.||++++|+|++.+....+.. +.+.+       .++|.++|+||+|+.+.
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~~-------~~k~~ilVlNK~Dl~~~   61 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKIL-------GNKPRIIVLNKADLADP   61 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCChh-hHhHh-------cCCCEEEEEehhhcCCh
Confidence            34567889999999999998654333222 22222       25799999999999754

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=96.94  E-value=0.00091  Score=67.57  Aligned_cols=70  Identities=11%  Similarity=0.211  Sum_probs=40.1

Q ss_pred             cceEEecCCcccccccccCchhHHHH-----HhcccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFL-----RHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLN  400 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL-----~~i~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlN  400 (421)
                      ...+++.|.|+.+..    .+...|+     ...-+.+.++.|+|+..-.. ..........+..        .-+||+|
T Consensus        91 ~d~IvIEttG~a~p~----~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~--------AD~Ivln  158 (318)
T PRK11537         91 FDRLVIECTGMADPG----PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY--------ADRILLT  158 (318)
T ss_pred             CCEEEEECCCccCHH----HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh--------CCEEEEe
Confidence            457889999986532    2233332     12224588999999975221 1112222333332        2388999


Q ss_pred             CCCCCCCC
Q 014655          401 KIDLPEMY  408 (421)
Q Consensus       401 K~Dl~~~~  408 (421)
                      |+|+..+.
T Consensus       159 K~Dl~~~~  166 (318)
T PRK11537        159 KTDVAGEA  166 (318)
T ss_pred             ccccCCHH
Confidence            99998754

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=96.88  E-value=0.00094  Score=70.27  Aligned_cols=124  Identities=19%  Similarity=0.218  Sum_probs=75.5

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCcc-C----CCCe--eeeccceeecCCCC----------------CC-ccc
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA-D----YPFT--TLMPNLGRLDGDPT----------------LG-AEK  324 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-~----~pfT--Tl~p~~g~v~~~~~----------------~~-~~~  324 (421)
                      -+.+.++.++-+..-|||||..+|....--|+ .    .-||  ..+.+...+.....                .. ...
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            34566777888889999999999875432221 1    1122  12222222211000                00 000


Q ss_pred             cccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       325 ~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      -+.-|.+||.||+.+..++       .-..++-+|..+.|||+-+..-.+....|.+.+...     -+| ++|+||+|.
T Consensus        96 ~~FLiNLIDSPGHVDFSSE-------VTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER-----IkP-vlv~NK~DR  162 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSE-------VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-----IKP-VLVMNKMDR  162 (842)
T ss_pred             cceeEEeccCCCcccchhh-------hhheeEeccCcEEEEEccCceEechHHHHHHHHHhh-----ccc-eEEeehhhH
Confidence            1124889999999987554       345678889999999998876555556677766541     244 678999996


Q ss_pred             C
Q 014655          405 P  405 (421)
Q Consensus       405 ~  405 (421)
                      .
T Consensus       163 A  163 (842)
T KOG0469|consen  163 A  163 (842)
T ss_pred             H
Confidence            3

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.85  E-value=0.0012  Score=65.01  Aligned_cols=59  Identities=25%  Similarity=0.394  Sum_probs=40.5

Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ||++..      ..+.+.+.++.||++++|+|+..+...++. .+.+.+       .++|+++|+||+|+.+.
T Consensus         5 pgHm~k------~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-------~~kp~IiVlNK~DL~~~   63 (276)
T TIGR03596         5 PGHMAK------ARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-------GNKPRLIVLNKADLADP   63 (276)
T ss_pred             hHHHHH------HHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-------CCCCEEEEEEccccCCH
Confidence            676643      234566788999999999999865443332 232222       25899999999999754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.83  E-value=0.0036  Score=55.23  Aligned_cols=105  Identities=21%  Similarity=0.225  Sum_probs=59.9

Q ss_pred             cCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhccc
Q 014655          278 VGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR  357 (421)
Q Consensus       278 VG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~r  357 (421)
                      -+..++||||+--.+...-..   ....++     .++.++...  .+...++|+|+|+....         ..+..+..
T Consensus         6 ~~kgg~gkt~~~~~~a~~~~~---~~~~~~-----~vd~D~~~~--~~~yd~VIiD~p~~~~~---------~~~~~l~~   66 (139)
T cd02038           6 SGKGGVGKTNISANLALALAK---LGKRVL-----LLDADLGLA--NLDYDYIIIDTGAGISD---------NVLDFFLA   66 (139)
T ss_pred             cCCCCCcHHHHHHHHHHHHHH---CCCcEE-----EEECCCCCC--CCCCCEEEEECCCCCCH---------HHHHHHHh
Confidence            478899999997776542110   011111     111111100  12247999999985432         23456788


Q ss_pred             CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          358 TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       358 advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ||.+++|++.+... ..+...+.+++....   ...++.+|+|+++..
T Consensus        67 aD~vviv~~~~~~s-~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~~  110 (139)
T cd02038          67 ADEVIVVTTPEPTS-ITDAYALIKKLAKQL---RVLNFRVVVNRAESP  110 (139)
T ss_pred             CCeEEEEcCCChhH-HHHHHHHHHHHHHhc---CCCCEEEEEeCCCCH
Confidence            99999999986433 333333444444321   345678999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.83  E-value=0.0015  Score=68.32  Aligned_cols=73  Identities=18%  Similarity=0.187  Sum_probs=40.6

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhccc--CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~r--advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++++||||..........--..+++.+..  ..-.++|+|++...     ..+.+.+..|..  . .+-=+|+||.|-
T Consensus       300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-----~~~~~~~~~f~~--~-~~~glIlTKLDE  371 (432)
T PRK12724        300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-----HHTLTVLKAYES--L-NYRRILLTKLDE  371 (432)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-----HHHHHHHHHhcC--C-CCCEEEEEcccC
Confidence            4789999999864322111111233333321  33578899987532     234445555532  1 234678999997


Q ss_pred             CCC
Q 014655          405 PEM  407 (421)
Q Consensus       405 ~~~  407 (421)
                      ...
T Consensus       372 t~~  374 (432)
T PRK12724        372 ADF  374 (432)
T ss_pred             CCC
Confidence            543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.80  E-value=0.0022  Score=68.81  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             hceecccCCCCCChhHHHHHHhc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .-.|+|+|.+|+||||++..|..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998864

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.76  E-value=0.0023  Score=66.16  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             hceecccCCCCCChhHHHHHHhc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..-|+|+|++|+||||++..|..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34579999999999999999864

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.73  E-value=0.0029  Score=66.44  Aligned_cols=73  Identities=14%  Similarity=0.125  Sum_probs=38.8

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++|+||||...........-..+++......-+++|++++..  ..+   +.+.+..|..  . .+.-+|+||+|...
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~---l~~~~~~f~~--~-~~~~vI~TKlDet~  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YED---LKDIYKHFSR--L-PLDGLIFTKLDETS  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHH---HHHHHHHhCC--C-CCCEEEEecccccc
Confidence            47999999998543211111112233322123456778887642  223   4444455542  1 12368899999865


Q ss_pred             C
Q 014655          407 M  407 (421)
Q Consensus       407 ~  407 (421)
                      .
T Consensus       372 ~  372 (424)
T PRK05703        372 S  372 (424)
T ss_pred             c
Confidence            4

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.72  E-value=0.0029  Score=64.70  Aligned_cols=125  Identities=24%  Similarity=0.231  Sum_probs=71.5

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccC--------------CCCeee---eccce------eecCCCCCCcc----ccc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIAD--------------YPFTTL---MPNLG------RLDGDPTLGAE----KYS  326 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~--------------~pfTTl---~p~~g------~v~~~~~~~~~----~~~  326 (421)
                      +|+++|--.+|||||+--|+..+..-.+              ..+.|.   ...+|      .+++...+..+    .-+
T Consensus       169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SS  248 (591)
T KOG1143|consen  169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSS  248 (591)
T ss_pred             EEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhc
Confidence            6899999999999999999865321100              011111   01111      12222111100    012


Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .-++++|..|..+..+-.   .+..-.  ...|..++|+.+.....+...+.|--.+ .     ++.|++++++|+|+.+
T Consensus       249 KlvTfiDLAGh~kY~~TT---i~gLtg--Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~-A-----L~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  249 KLVTFIDLAGHAKYQKTT---IHGLTG--YTPHFACLVVSADRGITWTTREHLGLIA-A-----LNIPFFVLVTKMDLVD  317 (591)
T ss_pred             ceEEEeecccchhhheee---eeeccc--CCCceEEEEEEcCCCCccccHHHHHHHH-H-----hCCCeEEEEEeecccc
Confidence            348999999986542210   000000  2247788899988877766655443333 2     5799999999999998


Q ss_pred             CCC
Q 014655          407 MYD  409 (421)
Q Consensus       407 ~~e  409 (421)
                      .+.
T Consensus       318 ~~~  320 (591)
T KOG1143|consen  318 RQG  320 (591)
T ss_pred             chh
Confidence            753

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=96.71  E-value=0.0021  Score=57.51  Aligned_cols=45  Identities=22%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             CEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          359 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       359 dvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      |++++|+|+.++....+.......+..     .++|+++|+||+|+.+.+
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~~   45 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKE-----KGKKLILVLNKADLVPKE   45 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhc-----CCCCEEEEEechhcCCHH
Confidence            789999999876544332211123322     468999999999997643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.69  E-value=0.0052  Score=68.57  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=40.8

Q ss_pred             cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++||||||.....   ..+...  .+......+-+++|+|++..     .+.+.+.++.|.......+-=+|+||.|.
T Consensus       264 ~D~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt~~-----~~~l~~i~~~f~~~~~~~i~glIlTKLDE  335 (767)
T PRK14723        264 KHLVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAASH-----GDTLNEVVHAYRHGAGEDVDGCIITKLDE  335 (767)
T ss_pred             CCEEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCCCc-----HHHHHHHHHHHhhcccCCCCEEEEeccCC
Confidence            469999999965432   112221  11222345667899998742     23444555555421111234678999997


Q ss_pred             CCC
Q 014655          405 PEM  407 (421)
Q Consensus       405 ~~~  407 (421)
                      ...
T Consensus       336 t~~  338 (767)
T PRK14723        336 ATH  338 (767)
T ss_pred             CCC
Confidence            653

>PRK01889 GTPase RsgA; Reviewed

Probab=96.65  E-value=0.0014  Score=67.27  Aligned_cols=28  Identities=36%  Similarity=0.425  Sum_probs=23.4

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++..-.++|+|.+|+|||||+|+|.+..
T Consensus       192 L~~g~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        192 LSGGKTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             hhcCCEEEEECCCCccHHHHHHHHHHhc
Confidence            3334479999999999999999999754

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.65  E-value=0.0031  Score=64.72  Aligned_cols=126  Identities=25%  Similarity=0.171  Sum_probs=73.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCC--------------CCeeeeccceeecCCCCC---------Cccc----
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY--------------PFTTLMPNLGRLDGDPTL---------GAEK----  324 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~--------------pfTTl~p~~g~v~~~~~~---------~~~~----  324 (421)
                      -..|+..|.-++|||||+-+|+-.++.-.+-              .+-|.+..++.+-++...         ..+.    
T Consensus       117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv  196 (527)
T COG5258         117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV  196 (527)
T ss_pred             eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence            3578999999999999999987654432110              011112222222221100         0000    


Q ss_pred             --cccceEEecCCcccccccccCchhHHHHHhc--ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655          325 --YSSEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN  400 (421)
Q Consensus       325 --~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i--~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlN  400 (421)
                        -+.=+.++||-|+...       -+..++-+  +..|..++|+-+.+..+...-+.+--.+.      .+.|+++|++
T Consensus       197 ~~aDklVsfVDtvGHEpw-------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a------~~lPviVvvT  263 (527)
T COG5258         197 KRADKLVSFVDTVGHEPW-------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA------MELPVIVVVT  263 (527)
T ss_pred             hhcccEEEEEecCCccHH-------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh------hcCCEEEEEE
Confidence              0123789999997432       12223333  56799999999887654444333333333      4689999999


Q ss_pred             CCCCCCCCCc
Q 014655          401 KIDLPEMYDD  410 (421)
Q Consensus       401 K~Dl~~~~e~  410 (421)
                      |+|+.+++..
T Consensus       264 K~D~~~ddr~  273 (527)
T COG5258         264 KIDMVPDDRF  273 (527)
T ss_pred             ecccCcHHHH
Confidence            9999887643

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.0032  Score=72.93  Aligned_cols=124  Identities=23%  Similarity=0.239  Sum_probs=68.6

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc----ccCchh
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----LGKGLG  348 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~----~~~gl~  348 (421)
                      -.+||+||+||||++.----.-+-.  .....+. .+....|+       -++.++-+++||.|-.-..+    .++...
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~-~~gT~~cd-------wwf~deaVlIDtaGry~~q~s~~~~~~~~W  199 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLA-GPGTRNCD-------WWFTDEAVLIDTAGRYITQDSADEVDRAEW  199 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhcccccc-CCCCcccC-------cccccceEEEcCCcceecccCcchhhHHHH
Confidence            4789999999999987643322211  1111111 11111222       13567889999999543221    233344


Q ss_pred             HHHHHhc------ccCCEEEEEeeCCCC---CChhh---HHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCC
Q 014655          349 RNFLRHL------RRTRLLVHVIDAAAE---NPVND---YRTVKEELRMYNPDY-LERPFIVVLNKIDLPE  406 (421)
Q Consensus       349 ~~fL~~i------~radvIl~VvD~s~~---~~~~~---~~~l~~eL~~~~~~l-~~kP~IIVlNK~Dl~~  406 (421)
                      ..||..+      +-.+.||+.+|+++-   +..+.   ...|+.-|++....+ ...|+.+++||+|+..
T Consensus       200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            4454443      336889999998762   22222   222333233222111 4589999999999976

>cd00066 G-alpha G protein alpha subunit

Probab=96.64  E-value=0.0039  Score=62.87  Aligned_cols=73  Identities=15%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC-------hhhHHHHHHHHHhc--CCCCCCCCEEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMY--NPDYLERPFIV  397 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~-------~~~~~~l~~eL~~~--~~~l~~kP~II  397 (421)
                      ..+.++|+.|...       ....|..+.+.+++|+||+|+++.+.       ...+..-++.++..  ++.+.+.|+++
T Consensus       161 ~~~~~~DvgGq~~-------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill  233 (317)
T cd00066         161 LKFRMFDVGGQRS-------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIIL  233 (317)
T ss_pred             eEEEEECCCCCcc-------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEE
Confidence            4689999999633       35567778899999999999987421       11111111122211  13445799999


Q ss_pred             EEeCCCCCC
Q 014655          398 VLNKIDLPE  406 (421)
Q Consensus       398 VlNK~Dl~~  406 (421)
                      ++||.|+..
T Consensus       234 ~~NK~D~f~  242 (317)
T cd00066         234 FLNKKDLFE  242 (317)
T ss_pred             EccChHHHH
Confidence            999999754

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.56  E-value=0.0098  Score=47.14  Aligned_cols=72  Identities=24%  Similarity=0.190  Sum_probs=46.3

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHh
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH  354 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~  354 (421)
                      +++.|..++||||+...|...-.. ..+.  +     ..+            +.+.++|+|+.......   +   ....
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~--v-----~~~------------~d~iivD~~~~~~~~~~---~---~~~~   55 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-RGKR--V-----LLI------------DDYVLIDTPPGLGLLVL---L---CLLA   55 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCe--E-----EEE------------CCEEEEeCCCCccchhh---h---hhhh
Confidence            567799999999999998754211 1111  1     111            14799999997654210   0   1355


Q ss_pred             cccCCEEEEEeeCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAENP  372 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~  372 (421)
                      +..+|.++++++......
T Consensus        56 ~~~~~~vi~v~~~~~~~~   73 (99)
T cd01983          56 LLAADLVIIVTTPEALAV   73 (99)
T ss_pred             hhhCCEEEEecCCchhhH
Confidence            678899999999876443

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.56  E-value=0.0054  Score=52.04  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             ecccCCCCCChhHHHHHHhcC
Q 014655          275 VGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      |.|.|+||+|||+|++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            568999999999999999864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>smart00275 G_alpha G protein alpha subunit

Probab=96.54  E-value=0.0063  Score=62.09  Aligned_cols=72  Identities=15%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC----------hhhHHHHHHHHHhcCCCCCCCCEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP----------VNDYRTVKEELRMYNPDYLERPFI  396 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~----------~~~~~~l~~eL~~~~~~l~~kP~I  396 (421)
                      ..+.++|+.|...       ....|..+.+.+++|+||+|+++.+.          ..+...+.+.+-. ++.+.+.|++
T Consensus       184 ~~~~~~DvgGqr~-------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~-~~~~~~~pii  255 (342)
T smart00275      184 LFFRMFDVGGQRS-------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN-SRWFANTSII  255 (342)
T ss_pred             eEEEEEecCCchh-------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc-CccccCCcEE
Confidence            3589999999632       34567777899999999999997321          1111112222221 2345679999


Q ss_pred             EEEeCCCCCC
Q 014655          397 VVLNKIDLPE  406 (421)
Q Consensus       397 IVlNK~Dl~~  406 (421)
                      +++||.|+..
T Consensus       256 l~~NK~D~~~  265 (342)
T smart00275      256 LFLNKIDLFE  265 (342)
T ss_pred             EEEecHHhHH
Confidence            9999999854

Subunit of G proteins that contains the guanine nucleotide binding site

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.54  E-value=0.015  Score=49.04  Aligned_cols=100  Identities=20%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             CCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccC
Q 014655          279 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRT  358 (421)
Q Consensus       279 G~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~ra  358 (421)
                      +..++||||+...|..+-.....+  .+     ..++.++.     .+..++++|+|+....         .....+..|
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~--~~-----~l~d~d~~-----~~~D~IIiDtpp~~~~---------~~~~~l~~a   65 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGR--RV-----LLVDLDLQ-----FGDDYVVVDLGRSLDE---------VSLAALDQA   65 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCC--cE-----EEEECCCC-----CCCCEEEEeCCCCcCH---------HHHHHHHHc
Confidence            567999999888776432111011  11     12222221     1236899999996542         234567889


Q ss_pred             CEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          359 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       359 dvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                      |.+++|++.+.. .......+.+.++..... ....+.+|+|+
T Consensus        66 D~vlvvv~~~~~-s~~~~~~~~~~l~~~~~~-~~~~~~lVvNr  106 (106)
T cd03111          66 DRVFLVTQQDLP-SIRNAKRLLELLRVLDYS-LPAKIELVLNR  106 (106)
T ss_pred             CeEEEEecCChH-HHHHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence            999999988653 344455555666554321 13457788885

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.53  E-value=0.026  Score=50.69  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=43.9

Q ss_pred             ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .++|+|+|+-...         .....+..||.+++|++.+... ......+.+.++..+    .....+|+|++|-..
T Consensus        64 d~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~~~~~~----~~~~~iv~N~~~~~~  128 (179)
T cd02036          64 DYILIDSPAGIER---------GFITAIAPADEALLVTTPEISS-LRDADRVKGLLEALG----IKVVGVIVNRVRPDM  128 (179)
T ss_pred             CEEEEECCCCCcH---------HHHHHHHhCCcEEEEeCCCcch-HHHHHHHHHHHHHcC----CceEEEEEeCCcccc
Confidence            6999999985432         2345567899999999987543 444444555665422    234678999998654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.52  E-value=0.0044  Score=64.88  Aligned_cols=69  Identities=16%  Similarity=0.192  Sum_probs=39.7

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcc---cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR---RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~---radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      ..+.++||+|......   .+. .-+..+.   ...-.++|+|++..     ...+.+.+..|..   -..-=+|+||.|
T Consensus       270 ~d~VLIDTaGrsqrd~---~~~-~~l~~l~~~~~~~~~~LVl~at~~-----~~~~~~~~~~f~~---~~~~~~I~TKlD  337 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQ---MLA-EQIAMLSQCGTQVKHLLLLNATSS-----GDTLDEVISAYQG---HGIHGCIITKVD  337 (420)
T ss_pred             CCEEEecCCCCCcchH---HHH-HHHHHHhccCCCceEEEEEcCCCC-----HHHHHHHHHHhcC---CCCCEEEEEeee
Confidence            4689999999765311   111 1223332   23457789998742     2334455566642   123467899999


Q ss_pred             CCCC
Q 014655          404 LPEM  407 (421)
Q Consensus       404 l~~~  407 (421)
                      ....
T Consensus       338 Et~~  341 (420)
T PRK14721        338 EAAS  341 (420)
T ss_pred             CCCC
Confidence            7653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=96.49  E-value=0.0027  Score=63.05  Aligned_cols=61  Identities=23%  Similarity=0.402  Sum_probs=41.9

Q ss_pred             cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      --||++..+      .+...+.++.||++|+|+|+..+...++ ..+.+.+       .++|+++|+||+|+.+.
T Consensus         6 wfpgHm~k~------~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~-------~~kp~iiVlNK~DL~~~   66 (287)
T PRK09563          6 WFPGHMAKA------RREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKII-------GNKPRLLILNKSDLADP   66 (287)
T ss_pred             CcHHHHHHH------HHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHh-------CCCCEEEEEEchhcCCH
Confidence            457876542      3456788899999999999976544333 2222222       25899999999999754

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.46  E-value=0.0019  Score=60.73  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=20.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +..|.+.|+|+||||+|+-.++..
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~   36 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRA   36 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHH
Confidence            468999999999999999987653

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.44  E-value=0.0033  Score=57.89  Aligned_cols=47  Identities=26%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             CEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          359 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       359 dvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      |++++|+|+..+....+ ..+.+.+..   ...++|+|+|+||+|+.+...
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~l---~~~~kp~IlVlNK~DL~~~~~   47 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVLQ---AGGNKKLVLVLNKIDLVPKEN   47 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHHh---ccCCCCEEEEEehhhcCCHHH
Confidence            78999999987543322 223333211   113589999999999986544

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.39  E-value=0.0072  Score=59.76  Aligned_cols=69  Identities=13%  Similarity=0.104  Sum_probs=41.1

Q ss_pred             cceEEecCCcccccccccCchhH---HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~---~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      ..+.++||||.....   ..+..   .+++.. ..+.+++|+|++..  .   ..+.+.++.|..   -.+-=+|+||.|
T Consensus       155 ~D~ViIDt~Gr~~~~---~~~l~el~~~~~~~-~~~~~~LVl~a~~~--~---~d~~~~~~~f~~---~~~~~~I~TKlD  222 (270)
T PRK06731        155 VDYILIDTAGKNYRA---SETVEEMIETMGQV-EPDYICLTLSASMK--S---KDMIEIITNFKD---IHIDGIVFTKFD  222 (270)
T ss_pred             CCEEEEECCCCCcCC---HHHHHHHHHHHhhh-CCCeEEEEEcCccC--H---HHHHHHHHHhCC---CCCCEEEEEeec
Confidence            478999999976431   12222   233332 34678999998742  1   234445566653   233467899999


Q ss_pred             CCCC
Q 014655          404 LPEM  407 (421)
Q Consensus       404 l~~~  407 (421)
                      ....
T Consensus       223 et~~  226 (270)
T PRK06731        223 ETAS  226 (270)
T ss_pred             CCCC
Confidence            7653

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.37  E-value=0.0092  Score=61.86  Aligned_cols=128  Identities=17%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCC--Cc-cCCCCeeeecc-ceeec---------CCCC---CCcc--------cccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKP--DI-ADYPFTTLMPN-LGRLD---------GDPT---LGAE--------KYSS  327 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~--~i-a~~pfTTl~p~-~g~v~---------~~~~---~~~~--------~~~~  327 (421)
                      ..-|+|||++||||||-|..|...-.  .. ....+-|+|.. +|-++         ..|.   ....        .-..
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            34589999999999999998865322  00 12223333321 11000         0000   0000        0124


Q ss_pred             ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++++||.|.-..+.+...--..|.+.. ...-..+|++++..     .+.+.+.+..|..  ... -=+++||+|....
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K-----~~dlkei~~~f~~--~~i-~~~I~TKlDET~s  353 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTK-----YEDLKEIIKQFSL--FPI-DGLIFTKLDETTS  353 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcc-----hHHHHHHHHHhcc--CCc-ceeEEEcccccCc
Confidence            6999999997543221111112233333 33445667777642     3445566666643  222 2567999997654


Q ss_pred             C
Q 014655          408 Y  408 (421)
Q Consensus       408 ~  408 (421)
                      -
T Consensus       354 ~  354 (407)
T COG1419         354 L  354 (407)
T ss_pred             h
Confidence            3

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.36  E-value=0.0098  Score=62.68  Aligned_cols=69  Identities=13%  Similarity=0.147  Sum_probs=39.7

Q ss_pred             cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++|+||||....   +..+-..  .+..+..+|.+++|+|++..  .+.+    +..+.|....  ...-+|+||+|.
T Consensus       176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av----~~a~~F~~~l--~i~gvIlTKlD~  244 (437)
T PRK00771        176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAK----NQAKAFHEAV--GIGGIIITKLDG  244 (437)
T ss_pred             CCEEEEECCCcccc---hHHHHHHHHHHHHHhcccceeEEEecccc--HHHH----HHHHHHHhcC--CCCEEEEecccC
Confidence            37999999997543   1112111  12334567899999998763  2222    2334443211  234678999996


Q ss_pred             CC
Q 014655          405 PE  406 (421)
Q Consensus       405 ~~  406 (421)
                      ..
T Consensus       245 ~a  246 (437)
T PRK00771        245 TA  246 (437)
T ss_pred             CC
Confidence            53

>PRK14974 cell division protein FtsY; Provisional

Probab=96.35  E-value=0.013  Score=59.64  Aligned_cols=71  Identities=25%  Similarity=0.315  Sum_probs=38.8

Q ss_pred             cceEEecCCccccccc-ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          327 SEATLADLPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~-~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ..++++||+|...... .-..+ ..+.+ .-..|.+++|+|+....  ...+..    ..|..  .-..--+|+||+|..
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL-~~i~~-~~~pd~~iLVl~a~~g~--d~~~~a----~~f~~--~~~~~giIlTKlD~~  292 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDEL-KKIVR-VTKPDLVIFVGDALAGN--DAVEQA----REFNE--AVGIDGVILTKVDAD  292 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHH-HHHHH-hhCCceEEEeeccccch--hHHHHH----HHHHh--cCCCCEEEEeeecCC
Confidence            4699999999875311 11111 11212 22468889999997532  222222    22221  113357889999986


Q ss_pred             CC
Q 014655          406 EM  407 (421)
Q Consensus       406 ~~  407 (421)
                      ..
T Consensus       293 ~~  294 (336)
T PRK14974        293 AK  294 (336)
T ss_pred             CC
Confidence            53

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.33  E-value=0.0099  Score=57.75  Aligned_cols=50  Identities=24%  Similarity=0.170  Sum_probs=37.4

Q ss_pred             hcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+..+|.+++|+|+.++. ....+..++..++.     .+.|.++|+||+||.+..
T Consensus        33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~   83 (245)
T TIGR00157        33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDE   83 (245)
T ss_pred             ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCH
Confidence            467899999999999765 55555555554443     468999999999997543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.33  E-value=0.0059  Score=55.50  Aligned_cols=41  Identities=29%  Similarity=0.420  Sum_probs=30.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceee
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL  314 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v  314 (421)
                      -|+|+|+++||||||++.|.+..+.+ .....+|..|..+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~   44 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEV   44 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCc
Confidence            47899999999999999999865443 333456666655543

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.0083  Score=58.31  Aligned_cols=122  Identities=19%  Similarity=0.226  Sum_probs=68.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ++|.|+|.--+||||+-.-....- |...-+.-.|..+..-++...        -..+.+||.||.++.....    ..+
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~s--------finf~v~dfPGQ~~~Fd~s----~D~   95 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNS--------FINFQVWDFPGQMDFFDPS----FDY   95 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhh--------hcceEEeecCCccccCCCc----cCH
Confidence            679999999999999887654321 111111111111111111110        0358999999998753221    123


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~-~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..-.+.+.+++||||+.+. ..+.+..|...+. .|.. ..+..+=+.+-|.|-...+
T Consensus        96 e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen   96 EMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDD  151 (347)
T ss_pred             HHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchh
Confidence            3445788999999998653 2333333332222 2321 1345677788999976554

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.31  E-value=0.009  Score=62.03  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=40.1

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++++||||........-.-...+++.+..-.-+++|+|++..  ..+   +.+.+..|..   -.+-=+|+||.|-..
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~---~~~~~~~~~~---~~~~~~I~TKlDet~  326 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSD---VKEIFHQFSP---FSYKTVIFTKLDETT  326 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHH---HHHHHHHhcC---CCCCEEEEEeccCCC
Confidence            47999999997643111000012233333322257899999864  223   3355555532   123467899999754


Q ss_pred             C
Q 014655          407 M  407 (421)
Q Consensus       407 ~  407 (421)
                      .
T Consensus       327 ~  327 (388)
T PRK12723        327 C  327 (388)
T ss_pred             c
Confidence            3

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.26  E-value=0.025  Score=51.45  Aligned_cols=78  Identities=22%  Similarity=0.247  Sum_probs=52.2

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++|+|||+....         ..+..+..||.+++|+..+.. ...+...+.+.++.+     +.|+.+|+||+|...
T Consensus        93 ~d~viiDtpp~~~~---------~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-----~~~~~vV~N~~~~~~  157 (179)
T cd03110          93 AELIIIDGPPGIGC---------PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-----GIPVGVVINKYDLND  157 (179)
T ss_pred             CCEEEEECcCCCcH---------HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-----CCCEEEEEeCCCCCc
Confidence            47999999975432         234556889999999998753 445555666666653     467889999999754


Q ss_pred             CC--CchHHHHhCCC
Q 014655          407 MY--DDSSSRQGIGF  419 (421)
Q Consensus       407 ~~--e~~~~l~~lGl  419 (421)
                      ..  +..+.++++|+
T Consensus       158 ~~~~~~~~~~~~~~~  172 (179)
T cd03110         158 EIAEEIEDYCEEEGI  172 (179)
T ss_pred             chHHHHHHHHHHcCC
Confidence            32  23344555554

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=96.15  E-value=0.016  Score=48.46  Aligned_cols=22  Identities=23%  Similarity=0.123  Sum_probs=19.6

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +|.++|..++|||+|+.++...
T Consensus         2 kvv~~G~~gvGKt~l~~~~~~~   23 (124)
T smart00010        2 KVVGIGDSGVGKVGKSARFVQF   23 (124)
T ss_pred             EEEEECCCChhHHHHHHHHhcC
Confidence            6899999999999999999543

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.13  E-value=0.009  Score=63.66  Aligned_cols=123  Identities=20%  Similarity=0.206  Sum_probs=62.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC------CccCCCCeeeecc-------c---eeecCCCCCC--c---------ccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP------DIADYPFTTLMPN-------L---GRLDGDPTLG--A---------EKY  325 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~------~ia~~pfTTl~p~-------~---g~v~~~~~~~--~---------~~~  325 (421)
                      --++|||++||||||++..|...-.      .+.   ..+.|+.       +   +.....+...  .         ..-
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~---LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~  333 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVA---LLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR  333 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE---EEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence            3589999999999999999875321      121   1111111       0   0000000000  0         001


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ...+.++||+|....... ......++.......-.++|+|++..     ...+.+.+..|..   ....-+|+||+|-.
T Consensus       334 d~d~VLIDTaGr~~~d~~-~~e~~~~l~~~~~p~e~~LVLdAt~~-----~~~l~~i~~~f~~---~~~~g~IlTKlDet  404 (484)
T PRK06995        334 NKHIVLIDTIGMSQRDRM-VSEQIAMLHGAGAPVKRLLLLNATSH-----GDTLNEVVQAYRG---PGLAGCILTKLDEA  404 (484)
T ss_pred             CCCeEEeCCCCcChhhHH-HHHHHHHHhccCCCCeeEEEEeCCCc-----HHHHHHHHHHhcc---CCCCEEEEeCCCCc
Confidence            235899999996543111 00011122222212236788998743     2345556666653   22346679999975


Q ss_pred             CC
Q 014655          406 EM  407 (421)
Q Consensus       406 ~~  407 (421)
                      ..
T Consensus       405 ~~  406 (484)
T PRK06995        405 AS  406 (484)
T ss_pred             cc
Confidence            43

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=96.10  E-value=0.019  Score=47.49  Aligned_cols=71  Identities=15%  Similarity=0.163  Sum_probs=44.5

Q ss_pred             ecccC-CCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          275 VGLVG-LPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       275 V~LVG-~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      |+++| ..++||||+...|...-.. ...       ....++.++.       ..++++|+|+....         .+..
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~-------~vl~~d~d~~-------~d~viiD~p~~~~~---------~~~~   57 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGK-------RVLLIDLDPQ-------YDYIIIDTPPSLGL---------LTRN   57 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCC-------cEEEEeCCCC-------CCEEEEeCcCCCCH---------HHHH
Confidence            44555 6799999998877543211 111       1112222221       36899999996532         3446


Q ss_pred             hcccCCEEEEEeeCCC
Q 014655          354 HLRRTRLLVHVIDAAA  369 (421)
Q Consensus       354 ~i~radvIl~VvD~s~  369 (421)
                      .+..||.++++++.+.
T Consensus        58 ~l~~ad~viv~~~~~~   73 (104)
T cd02042          58 ALAAADLVLIPVQPSP   73 (104)
T ss_pred             HHHHCCEEEEeccCCH
Confidence            6788999999998764

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.00  E-value=0.0091  Score=52.73  Aligned_cols=40  Identities=30%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCC--ccCCCCeeeeccceee
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRL  314 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~--ia~~pfTTl~p~~g~v  314 (421)
                      |+|+|++++|||||++.|....+.  ....+.||..|..+..
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~   43 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEV   43 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCcc
Confidence            678999999999999999976432  2344557777765554

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.98  E-value=0.013  Score=57.98  Aligned_cols=126  Identities=19%  Similarity=0.230  Sum_probs=69.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCcc----CCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc-
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIA----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-  346 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia----~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g-  346 (421)
                      .++|..||.++-|||||+..|.+......    .+|..-+..+...+.-      ....-+++|+||.|+-+.-..... 
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE------snvrlKLtiv~tvGfGDQinK~~Sy  115 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE------SNVRLKLTIVDTVGFGDQINKEDSY  115 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh------cCeeEEEEEEeecccccccCccccc
Confidence            46899999999999999999998764321    2222222222111111      112246899999998653211111 


Q ss_pred             ------hhHHHHH---------------hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          347 ------LGRNFLR---------------HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       347 ------l~~~fL~---------------~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                            +...|-.               |=.|.++++|.|..+... ...+..+  .++.++   ....+|-|+-|+|..
T Consensus       116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~-LKslDLv--tmk~Ld---skVNIIPvIAKaDti  189 (406)
T KOG3859|consen  116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHS-LKSLDLV--TMKKLD---SKVNIIPVIAKADTI  189 (406)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcc-hhHHHHH--HHHHHh---hhhhhHHHHHHhhhh
Confidence                  1112211               224678999999887533 3322211  112222   234566688888876


Q ss_pred             CCCC
Q 014655          406 EMYD  409 (421)
Q Consensus       406 ~~~e  409 (421)
                      ...+
T Consensus       190 sK~e  193 (406)
T KOG3859|consen  190 SKEE  193 (406)
T ss_pred             hHHH
Confidence            5443

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=95.97  E-value=0.004  Score=62.19  Aligned_cols=76  Identities=17%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+.++|.||+.-       +-...|.-..-.|+.+++|-++.+.|..+-...+..++.+.    -+.++|+-||+||..+
T Consensus       126 HVSfVDCPGHDi-------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~----LkhiiilQNKiDli~e  194 (466)
T KOG0466|consen  126 HVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK----LKHIIILQNKIDLIKE  194 (466)
T ss_pred             EEEeccCCchHH-------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh----hceEEEEechhhhhhH
Confidence            488999999742       11223333344577788887776555444433444444432    3678999999999987


Q ss_pred             CCchHHH
Q 014655          408 YDDSSSR  414 (421)
Q Consensus       408 ~e~~~~l  414 (421)
                      .+..++.
T Consensus       195 ~~A~eq~  201 (466)
T KOG0466|consen  195 SQALEQH  201 (466)
T ss_pred             HHHHHHH
Confidence            6655543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=95.96  E-value=0.012  Score=58.48  Aligned_cols=48  Identities=17%  Similarity=0.031  Sum_probs=35.8

Q ss_pred             cccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       355 i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +..+|++++|+|+.++. ....++.++..++.     .++|.++|+||+|+.+.
T Consensus        76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~  124 (287)
T cd01854          76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDD  124 (287)
T ss_pred             EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCCh
Confidence            57899999999998765 44444444444443     46899999999999765

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12289 GTPase RsgA; Reviewed

Probab=95.92  E-value=0.014  Score=59.84  Aligned_cols=50  Identities=14%  Similarity=0.064  Sum_probs=34.1

Q ss_pred             hcccCCEEEEEeeCCCCCChh-hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~-~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+..+|.+++|+|+.++.... .+..++.....     .++|+++|+||+||....
T Consensus        86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-----~~ip~ILVlNK~DLv~~~  136 (352)
T PRK12289         86 PVANADQILLVFALAEPPLDPWQLSRFLVKAES-----TGLEIVLCLNKADLVSPT  136 (352)
T ss_pred             hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEchhcCChH
Confidence            367899999999998654222 22333333322     468999999999997653

>PRK00098 GTPase RsgA; Reviewed

Probab=95.89  E-value=0.014  Score=58.29  Aligned_cols=48  Identities=25%  Similarity=0.123  Sum_probs=34.1

Q ss_pred             cccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +..+|++++|+|+.++++.... +.+...+..     .++|.++|+||+|+.+.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~-----~~ip~iIVlNK~DL~~~  126 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-----NGIKPIIVLNKIDLLDD  126 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEhHHcCCC
Confidence            5789999999999876543332 333333333     46899999999999743

>KOG2484 consensus GTPase [General function prediction only]

Probab=95.88  E-value=0.012  Score=60.54  Aligned_cols=60  Identities=23%  Similarity=0.259  Sum_probs=42.0

Q ss_pred             hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      ....|.+.++.+|+||.|+|+.+|......+ +.+++..-.   .++..|+|+||+|+++.+..
T Consensus       136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~-vE~~V~~~~---gnKkLILVLNK~DLVPrEv~  195 (435)
T KOG2484|consen  136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPE-VEEAVLQAH---GNKKLILVLNKIDLVPREVV  195 (435)
T ss_pred             HHHHHHHHHhhhheEEEeeeccCCCCCCChh-HHHHHHhcc---CCceEEEEeehhccCCHHHH
Confidence            3456788889999999999999876544332 222222111   34889999999999987643

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.84  E-value=0.0088  Score=55.73  Aligned_cols=44  Identities=27%  Similarity=0.403  Sum_probs=35.4

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD  317 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~  317 (421)
                      =|.|+|+++||||||+++|....+.+ ...+.||..|..+.+++.
T Consensus         6 ~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~   50 (186)
T PRK14737          6 LFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGK   50 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCc
Confidence            37899999999999999998876544 456789998888876543

>PRK10867 signal recognition particle protein; Provisional

Probab=95.69  E-value=0.024  Score=59.77  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=17.4

Q ss_pred             ceecccCCCCCChhHHHHHHh
Q 014655          273 ADVGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt  293 (421)
                      .-|.++|.+++||||++..|.
T Consensus       101 ~vI~~vG~~GsGKTTtaakLA  121 (433)
T PRK10867        101 TVIMMVGLQGAGKTTTAGKLA  121 (433)
T ss_pred             EEEEEECCCCCcHHHHHHHHH
Confidence            457899999999999776664

>PRK13695 putative NTPase; Provisional

Probab=95.63  E-value=0.058  Score=49.08  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=19.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+|+|+|.+++|||||+..+.+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999997643

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=95.47  E-value=0.00092  Score=62.34  Aligned_cols=122  Identities=19%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +.++.++|.-++||+|++.+........ .|- .|+  +-.+-++..++.     .-.++.+||+.|....-..    .+
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~-~yR-AtIgvdfalkVl~wdd~-----t~vRlqLwdIagQerfg~m----tr   93 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSY-HYR-ATIGVDFALKVLQWDDK-----TIVRLQLWDIAGQERFGNM----TR   93 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHH-HHH-HHHhHHHHHHHhccChH-----HHHHHHHhcchhhhhhcce----EE
Confidence            4578899999999999999876533110 000 011  111112221110     1136789999997543111    11


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~  407 (421)
                         =+...+.+.++|+|++....++....+.++|..-.  +.-.-.|+++..||||+...
T Consensus        94 ---Vyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~  150 (229)
T KOG4423|consen   94 ---VYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS  150 (229)
T ss_pred             ---EEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence               12356788899999999887777777777665321  22233668999999998653

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=95.38  E-value=0.028  Score=56.77  Aligned_cols=28  Identities=21%  Similarity=0.363  Sum_probs=24.2

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      |.....|.++|..++||||||..|-+.+
T Consensus        49 lpsgk~VlvlGdn~sGKtsLi~klqg~e   76 (473)
T KOG3905|consen   49 LPSGKNVLVLGDNGSGKTSLISKLQGSE   76 (473)
T ss_pred             CCCCCeEEEEccCCCchhHHHHHhhccc
Confidence            3455679999999999999999998876

>TIGR00959 ffh signal recognition particle protein

Probab=95.35  E-value=0.047  Score=57.47  Aligned_cols=68  Identities=19%  Similarity=0.243  Sum_probs=36.4

Q ss_pred             cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++|+||||.....   ..+...  -+..+-..+-+++|+|+...  .+...    ....|... . ...=+|+||+|-
T Consensus       183 ~DvVIIDTaGr~~~d---~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~----~a~~f~~~-v-~i~giIlTKlD~  251 (428)
T TIGR00959       183 FDVVIVDTAGRLQID---EELMEELAAIKEILNPDEILLVVDAMTG--QDAVN----TAKTFNER-L-GLTGVVLTKLDG  251 (428)
T ss_pred             CCEEEEeCCCccccC---HHHHHHHHHHHHhhCCceEEEEEeccch--HHHHH----HHHHHHhh-C-CCCEEEEeCccC
Confidence            468999999975421   111111  12223457888999998642  22222    22222211 1 234667999995


Q ss_pred             C
Q 014655          405 P  405 (421)
Q Consensus       405 ~  405 (421)
                      .
T Consensus       252 ~  252 (428)
T TIGR00959       252 D  252 (428)
T ss_pred             c
Confidence            4

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.29  E-value=0.072  Score=44.78  Aligned_cols=24  Identities=38%  Similarity=0.516  Sum_probs=21.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ..|.++|.|++|||+|++.+.+.-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999998753

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.20  E-value=0.024  Score=52.66  Aligned_cols=41  Identities=34%  Similarity=0.455  Sum_probs=30.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceee
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL  314 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v  314 (421)
                      -|+|+|+++||||||++.|.+..+.+ .....||..|..+.+
T Consensus         7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~   48 (205)
T PRK00300          7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEV   48 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCc
Confidence            58999999999999999998865422 333456666665554

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=95.19  E-value=0.012  Score=55.09  Aligned_cols=43  Identities=33%  Similarity=0.397  Sum_probs=35.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD  317 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~  317 (421)
                      =+.|.|+.|||||||+++|.... .+ -....||+.|..|.+++.
T Consensus         6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~   49 (191)
T COG0194           6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGV   49 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCc
Confidence            47789999999999999999887 44 456778999998888764

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=95.18  E-value=0.02  Score=60.80  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCCCCCch
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY-LERPFIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l-~~kP~IIVlNK~Dl~~~~e~~  411 (421)
                      +-.+.+..++.++++|+||.+||+.++..+..     ..|+.|-.+. ..+..++++||+||..+....
T Consensus       161 NLE~WRQLWRVlErSDivvqIVDARnPllfr~-----~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~  224 (562)
T KOG1424|consen  161 NLEIWRQLWRVLERSDIVVQIVDARNPLLFRS-----PDLEDYVKEVDPSKANVLLVNKADLLPPEQRV  224 (562)
T ss_pred             CHHHHHHHHHHHhhcceEEEEeecCCccccCC-----hhHHHHHhccccccceEEEEehhhcCCHHHHH
Confidence            34566778899999999999999998743322     1222332222 247789999999999876543

>PRK13796 GTPase YqeH; Provisional

Probab=94.80  E-value=0.056  Score=55.60  Aligned_cols=49  Identities=27%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             HHHhcccCC-EEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTR-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~rad-vIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++++..++ +|++|||+.+..  ..   +..+|..+.   .++|+++|+||+|+.+.
T Consensus        62 ~l~~i~~~~~lIv~VVD~~D~~--~s---~~~~L~~~~---~~kpviLViNK~DLl~~  111 (365)
T PRK13796         62 LLNGIGDSDALVVNVVDIFDFN--GS---WIPGLHRFV---GNNPVLLVGNKADLLPK  111 (365)
T ss_pred             HHHhhcccCcEEEEEEECccCC--Cc---hhHHHHHHh---CCCCEEEEEEchhhCCC
Confidence            567777666 999999998632  22   333444432   25799999999999754

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=94.75  E-value=0.02  Score=63.29  Aligned_cols=76  Identities=17%  Similarity=0.229  Sum_probs=46.1

Q ss_pred             ceEEecCCcccccccc--cCch----hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          328 EATLADLPGLIEGAHL--GKGL----GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~--~~gl----~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                      .++++|+||+..-+..  ...+    ....+.+++.-..+++.|...+.+ +...+ .+......++  .+..++.|++|
T Consensus       133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d-~ats~-alkiarevDp--~g~RTigvitK  208 (657)
T KOG0446|consen  133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD-IATSP-ALVVAREVDP--GGSRTLEVITK  208 (657)
T ss_pred             hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-hhcCH-HHHHHHhhCC--CccchhHHhhh
Confidence            4899999999875442  2333    334567788888888888776532 11112 2233444444  34556778888


Q ss_pred             CCCCCC
Q 014655          402 IDLPEM  407 (421)
Q Consensus       402 ~Dl~~~  407 (421)
                      .|+.+.
T Consensus       209 ~Dlmdk  214 (657)
T KOG0446|consen  209 FDFMDK  214 (657)
T ss_pred             HHhhhc
Confidence            887653

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.75  E-value=0.0086  Score=51.75  Aligned_cols=29  Identities=34%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++..-.++|+|..++|||||+++|++..
T Consensus         7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    7 EIKPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEEccCCCccccceeeecccc
Confidence            34444579999999999999999999864

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14738 gmk guanylate kinase; Provisional

Probab=94.71  E-value=0.03  Score=52.79  Aligned_cols=42  Identities=26%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeec
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLD  315 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~  315 (421)
                      -|.|+|+++||||||+++|....... -..+.||..+..+.+.
T Consensus        15 ~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~   57 (206)
T PRK14738         15 LVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEID   57 (206)
T ss_pred             EEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCC
Confidence            47789999999999999998654433 4455667655544443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=94.37  E-value=0.022  Score=48.04  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+|+|.|+|||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999874

...

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.30  E-value=0.034  Score=51.43  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=26.3

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++.++....++|+|.++||||||+++|.+.-
T Consensus        18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          18 LWLAVEARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34455666789999999999999999998754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=94.30  E-value=0.027  Score=57.81  Aligned_cols=125  Identities=29%  Similarity=0.237  Sum_probs=65.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCcc--------------CCCCeeee---ccc-----eeecCCCC-----CCccc-
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIA--------------DYPFTTLM---PNL-----GRLDGDPT-----LGAEK-  324 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia--------------~~pfTTl~---p~~-----g~v~~~~~-----~~~~~-  324 (421)
                      ++|++||...|||||||--|+..+..-.              -..+.|..   ..+     |.+...|.     +.+.. 
T Consensus       134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI  213 (641)
T KOG0463|consen  134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI  213 (641)
T ss_pred             EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence            5899999999999999998875432110              01111110   001     11111110     00000 


Q ss_pred             ---cccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          325 ---YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       325 ---~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                         ...-+++||..|+.....-.   ..-.--|  -.|..+++|-+.....--..+.|--.|.      +..|+.+|++|
T Consensus       214 ce~saKviTFIDLAGHEkYLKTT---vFGMTGH--~PDf~MLMiGaNaGIiGmTKEHLgLALa------L~VPVfvVVTK  282 (641)
T KOG0463|consen  214 CEDSAKVITFIDLAGHEKYLKTT---VFGMTGH--MPDFTMLMIGANAGIIGMTKEHLGLALA------LHVPVFVVVTK  282 (641)
T ss_pred             ccccceeEEEEeccchhhhhhee---eeccccC--CCCceEEEecccccceeccHHhhhhhhh------hcCcEEEEEEe
Confidence               01238899999975431100   0000112  2477788887766433222233333333      46899999999


Q ss_pred             CCCCCCC
Q 014655          402 IDLPEMY  408 (421)
Q Consensus       402 ~Dl~~~~  408 (421)
                      +|..++.
T Consensus       283 IDMCPAN  289 (641)
T KOG0463|consen  283 IDMCPAN  289 (641)
T ss_pred             eccCcHH
Confidence            9988763

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=94.01  E-value=0.022  Score=55.39  Aligned_cols=32  Identities=34%  Similarity=0.435  Sum_probs=26.8

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.+++...-.|||||.++||||||++-|++.-
T Consensus        46 isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~   77 (249)
T COG1134          46 ISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY   77 (249)
T ss_pred             ceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence            34556666689999999999999999999864

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=93.96  E-value=0.076  Score=54.51  Aligned_cols=46  Identities=28%  Similarity=0.272  Sum_probs=31.2

Q ss_pred             cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+.++++++|+|+.+...  .   +..++..+.   .++|+++|+||+|+.+..
T Consensus        61 ~~~~~~Il~VvD~~d~~~--s---~~~~l~~~~---~~~piilV~NK~DLl~k~  106 (360)
T TIGR03597        61 GDSNALIVYVVDIFDFEG--S---LIPELKRFV---GGNPVLLVGNKIDLLPKS  106 (360)
T ss_pred             ccCCcEEEEEEECcCCCC--C---ccHHHHHHh---CCCCEEEEEEchhhCCCC
Confidence            367889999999976431  1   223333332   258999999999997643

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=93.89  E-value=0.24  Score=49.77  Aligned_cols=110  Identities=19%  Similarity=0.257  Sum_probs=66.2

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc----------
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG----------  340 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~----------  340 (421)
                      ..+.+.|||.+|.|||++++++....+...+... ..                   ..+..+.+|.--+.          
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~-~~-------------------~PVv~vq~P~~p~~~~~Y~~IL~~  119 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA-ER-------------------IPVVYVQMPPEPDERRFYSAILEA  119 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC-cc-------------------ccEEEEecCCCCChHHHHHHHHHH
Confidence            3467899999999999999999988764322111 11                   13444444432210          


Q ss_pred             ------ccc-cCchhHHHHHhcccCCEEEEEeeCCCC---CChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          341 ------AHL-GKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       341 ------a~~-~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                            ... ...+....+..++.+.+=++|||--+.   .+..+.+.+++.|+.+. +....|+|.|.++
T Consensus       120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~  189 (302)
T PF05621_consen  120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTR  189 (302)
T ss_pred             hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccH
Confidence                  000 011233345667788888999995442   22344556667776654 3467899988765

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=93.84  E-value=0.23  Score=52.28  Aligned_cols=26  Identities=31%  Similarity=0.439  Sum_probs=22.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+-.+|+|||+.++||||||..|++.
T Consensus       611 DmdSRiaIVGPNGVGKSTlLkLL~Gk  636 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVGKSTLLKLLIGK  636 (807)
T ss_pred             cccceeEEECCCCccHHHHHHHHhcC
Confidence            44558999999999999999999875

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.75  E-value=0.23  Score=50.73  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=22.5

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKP  297 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~  297 (421)
                      ...-|+++|.-++|||||++.|....+
T Consensus       187 df~VIgvlG~QgsGKStllslLaans~  213 (491)
T KOG4181|consen  187 DFTVIGVLGGQGSGKSTLLSLLAANSL  213 (491)
T ss_pred             CeeEEEeecCCCccHHHHHHHHhccCh
Confidence            345689999999999999999987643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.73  E-value=0.038  Score=53.90  Aligned_cols=23  Identities=39%  Similarity=0.486  Sum_probs=21.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      =|+|||++++|||||||.+.+-.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998854

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=93.70  E-value=0.025  Score=52.87  Aligned_cols=29  Identities=34%  Similarity=0.426  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++... .++|+|..++|||||++.|.+..
T Consensus        21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          21 LTLGPG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             EEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            455556 79999999999999999999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=93.61  E-value=0.036  Score=50.92  Aligned_cols=42  Identities=38%  Similarity=0.516  Sum_probs=31.7

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeeccceeecC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDG  316 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~v~~  316 (421)
                      |.|+|++++||+||.++|....+. . ...+.||..|..+.+++
T Consensus         5 ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g   48 (183)
T PF00625_consen    5 IVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDG   48 (183)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TT
T ss_pred             EEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCC
Confidence            678999999999999999887653 2 44567888887776654

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=93.58  E-value=0.32  Score=51.07  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.1

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      =||+||+.-+|||||++++..
T Consensus        19 YiGVVGPVRTGKSTFIKRFMe   39 (492)
T PF09547_consen   19 YIGVVGPVRTGKSTFIKRFME   39 (492)
T ss_pred             EEEeecCcccCchhHHHHHHH
Confidence            489999999999999999864

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=93.46  E-value=0.031  Score=52.49  Aligned_cols=29  Identities=31%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...-.++|+|..+||||||++.|++..
T Consensus        26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            33444479999999999999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.45  E-value=0.031  Score=53.25  Aligned_cols=29  Identities=31%  Similarity=0.323  Sum_probs=24.1

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..+||||||++.|++..
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          22 DVRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34444479999999999999999999864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=93.43  E-value=0.033  Score=52.12  Aligned_cols=30  Identities=37%  Similarity=0.311  Sum_probs=24.7

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...-.++|+|..+||||||++.|++..
T Consensus        23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444579999999999999999999864

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=93.41  E-value=0.032  Score=51.82  Aligned_cols=29  Identities=28%  Similarity=0.319  Sum_probs=24.2

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..++|||||++.|.+..
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        20 TIEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            44444579999999999999999999864

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=93.41  E-value=0.032  Score=52.36  Aligned_cols=29  Identities=38%  Similarity=0.306  Sum_probs=24.2

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...-.++|+|..+||||||++.|.+..
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        25 HITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34444479999999999999999999864

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.39  E-value=0.055  Score=41.79  Aligned_cols=21  Identities=43%  Similarity=0.457  Sum_probs=18.5

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ...|.|..++|||||+.|+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999853

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.38  E-value=0.04  Score=52.95  Aligned_cols=29  Identities=38%  Similarity=0.407  Sum_probs=23.5

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .++-.--++|+|+.+||||||++.|++.-
T Consensus        23 ~~~pGev~ailGPNGAGKSTlLk~LsGel   51 (259)
T COG4559          23 DLRPGEVLAILGPNGAGKSTLLKALSGEL   51 (259)
T ss_pred             eccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence            34444468999999999999999999853

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.36  E-value=0.033  Score=52.04  Aligned_cols=28  Identities=32%  Similarity=0.304  Sum_probs=23.4

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +...-.++|+|..+||||||++.|++..
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3344478999999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=93.33  E-value=0.037  Score=49.65  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=17.9

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +|+|+|.+++|||||+++|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6899999999999999999876

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=93.32  E-value=0.036  Score=52.24  Aligned_cols=30  Identities=37%  Similarity=0.438  Sum_probs=24.7

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.++..-.++|+|..+||||||++.|++..
T Consensus        26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          26 FSIKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444579999999999999999999864

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK12288 GTPase RsgA; Reviewed

Probab=93.32  E-value=0.18  Score=51.63  Aligned_cols=49  Identities=24%  Similarity=0.135  Sum_probs=33.7

Q ss_pred             cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+|.+++|++.........++.++...+.     .++|.+||+||+|+.+..
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-----~~i~~VIVlNK~DL~~~~  166 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET-----LGIEPLIVLNKIDLLDDE  166 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCcH
Confidence            3568999999987654444444444433332     468999999999997644

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=93.31  E-value=0.14  Score=53.21  Aligned_cols=57  Identities=25%  Similarity=0.360  Sum_probs=39.5

Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .....+.|..+|+||.|+|+.++-- .....+.+.|+.-.   ..+.+|.|+||+||++..
T Consensus       204 W~ELyKViDSSDVvvqVlDARDPmG-Trc~~ve~ylkke~---phKHli~vLNKvDLVPtw  260 (572)
T KOG2423|consen  204 WGELYKVIDSSDVVVQVLDARDPMG-TRCKHVEEYLKKEK---PHKHLIYVLNKVDLVPTW  260 (572)
T ss_pred             HHHHHHhhcccceeEEeeeccCCcc-cccHHHHHHHhhcC---CcceeEEEeeccccccHH
Confidence            3334566788999999999987532 22344555665532   457799999999998753

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=93.30  E-value=0.054  Score=42.07  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=19.0

Q ss_pred             ecccCCCCCChhHHHHHHhcC
Q 014655          275 VGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      |++.|.+++||||+.++|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999864

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=93.28  E-value=0.046  Score=47.36  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             ecccCCCCCChhHHHHHHhcCC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      |.++|+|+||||||...|....
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
Confidence            6789999999999999998543

...

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=93.28  E-value=0.037  Score=51.86  Aligned_cols=30  Identities=30%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...-.++|+|..+||||||++.|++..
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344445579999999999999999999864

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07261 topology modulation protein; Provisional

Probab=93.27  E-value=0.052  Score=49.70  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +|+|+|.|++|||||...|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=93.26  E-value=0.063  Score=55.47  Aligned_cols=70  Identities=21%  Similarity=0.353  Sum_probs=45.5

Q ss_pred             ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC----------hhhHHHHHHHHHhcCCCCCCCCEEE
Q 014655          328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP----------VNDYRTVKEELRMYNPDYLERPFIV  397 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~----------~~~~~~l~~eL~~~~~~l~~kP~II  397 (421)
                      .+.++|+.|...       -.+.|..+++.+++||||+++++-+.          ..+--.+.+++.. ++-+.+.|+|+
T Consensus       237 ~~~~~DvGGqr~-------eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~-~~~~~~~~iil  308 (389)
T PF00503_consen  237 KFRLIDVGGQRS-------ERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICN-NPWFKNTPIIL  308 (389)
T ss_dssp             EEEEEEETSSGG-------GGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHT-SGGGTTSEEEE
T ss_pred             ccceecCCCCch-------hhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHh-CcccccCceEE
Confidence            468999999743       25677788899999999999876321          1111223333322 12335789999


Q ss_pred             EEeCCCCC
Q 014655          398 VLNKIDLP  405 (421)
Q Consensus       398 VlNK~Dl~  405 (421)
                      ++||+|+.
T Consensus       309 ~lnK~D~f  316 (389)
T PF00503_consen  309 FLNKIDLF  316 (389)
T ss_dssp             EEE-HHHH
T ss_pred             eeecHHHH
Confidence            99999974

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.25  E-value=0.074  Score=54.96  Aligned_cols=100  Identities=20%  Similarity=0.236  Sum_probs=52.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcC------CCCc--cC------------CCCeeeeccceeecC-CCCC-------C
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHA------KPDI--AD------------YPFTTLMPNLGRLDG-DPTL-------G  321 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~------~~~i--a~------------~pfTTl~p~~g~v~~-~~~~-------~  321 (421)
                      ....-|.+||.-++||||.+..|...      ++..  ++            ..-.+..|.++.... +|..       .
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~  178 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR  178 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence            33446789999999999999887531      1111  11            011112333332111 1100       0


Q ss_pred             ccccccceEEecCCcccccccccCchhHHHHHh--cccCCEEEEEeeCCCCCC
Q 014655          322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENP  372 (421)
Q Consensus       322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~--i~radvIl~VvD~s~~~~  372 (421)
                      ...-+..++|+||.|-...   ..+|-...+..  .-.-|-+|||+|++-...
T Consensus       179 fKke~fdvIIvDTSGRh~q---e~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa  228 (483)
T KOG0780|consen  179 FKKENFDVIIVDTSGRHKQ---EASLFEEMKQVSKAIKPDEIIFVMDASIGQA  228 (483)
T ss_pred             HHhcCCcEEEEeCCCchhh---hHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence            0011347999999996432   33343332221  123689999999986543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=93.25  E-value=0.036  Score=52.25  Aligned_cols=29  Identities=31%  Similarity=0.342  Sum_probs=24.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...-.++|+|..+||||||++.|++..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34444479999999999999999999864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=93.24  E-value=0.036  Score=51.05  Aligned_cols=27  Identities=33%  Similarity=0.331  Sum_probs=22.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ...-.++|+|..+||||||++.|++..
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            333479999999999999999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=93.23  E-value=0.04  Score=52.27  Aligned_cols=29  Identities=31%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..+||||||++.|++..
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34444479999999999999999999864

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.23  E-value=0.036  Score=51.64  Aligned_cols=29  Identities=28%  Similarity=0.226  Sum_probs=24.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...-.++|+|..+||||||++.|++..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34444479999999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=93.19  E-value=0.054  Score=50.99  Aligned_cols=23  Identities=43%  Similarity=0.512  Sum_probs=21.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .|+|+|+.+||||||+|-+.+-.
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhcc
Confidence            69999999999999999998754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.18  E-value=0.039  Score=53.26  Aligned_cols=30  Identities=33%  Similarity=0.376  Sum_probs=23.9

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--|+|+|+.+||||||||.|.+-+
T Consensus        26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            344444469999999999999999998754

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=93.13  E-value=0.14  Score=52.50  Aligned_cols=73  Identities=19%  Similarity=0.347  Sum_probs=48.7

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh--hh--HHHHHHHHHhc-----CCCCCCCCEEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV--ND--YRTVKEELRMY-----NPDYLERPFIV  397 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~--~~--~~~l~~eL~~~-----~~~l~~kP~II  397 (421)
                      ..+.+.|++|....       .+.|....+.+++|+||++.++.+..  ++  ...+.+-++.|     ++-..+.++|+
T Consensus       195 ~~f~~~DvGGQRse-------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL  267 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSE-------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL  267 (354)
T ss_pred             CceEEEeCCCcHHH-------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence            35889999996432       44566677999999999999875321  11  12233333332     23445789999


Q ss_pred             EEeCCCCCC
Q 014655          398 VLNKIDLPE  406 (421)
Q Consensus       398 VlNK~Dl~~  406 (421)
                      .+||.||-+
T Consensus       268 FLNK~DLFe  276 (354)
T KOG0082|consen  268 FLNKKDLFE  276 (354)
T ss_pred             EeecHHHHH
Confidence            999999864

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=93.10  E-value=0.038  Score=51.92  Aligned_cols=29  Identities=34%  Similarity=0.323  Sum_probs=24.1

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..++|||||++.|.+..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          22 TVPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            34444479999999999999999998864

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=93.07  E-value=0.042  Score=52.37  Aligned_cols=29  Identities=28%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ++++..-.++|+|..++|||||++.|.+.
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34444457999999999999999999986

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=93.05  E-value=0.039  Score=51.58  Aligned_cols=29  Identities=28%  Similarity=0.204  Sum_probs=24.1

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..++|||||++.|++..
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          22 DIADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34444479999999999999999999864

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=93.05  E-value=0.039  Score=51.53  Aligned_cols=29  Identities=28%  Similarity=0.263  Sum_probs=23.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..++|||||++.|++..
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          22 SVEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33444479999999999999999999864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.03  E-value=0.043  Score=51.28  Aligned_cols=28  Identities=32%  Similarity=0.404  Sum_probs=23.5

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +...-.++|+|..++|||||++.|++..
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344479999999999999999999864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=93.03  E-value=0.039  Score=51.85  Aligned_cols=29  Identities=31%  Similarity=0.286  Sum_probs=23.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .++..-.++|+|..+||||||++.|++..
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          24 NVYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33444479999999999999999999864

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=93.01  E-value=0.043  Score=52.39  Aligned_cols=30  Identities=37%  Similarity=0.408  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...-.++|+|..+||||||++.|++..
T Consensus        23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        23 LNINPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            344444479999999999999999999864

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=92.98  E-value=0.041  Score=51.74  Aligned_cols=29  Identities=31%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...-.++|+|..+||||||++.|++..
T Consensus        27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33444479999999999999999999864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=92.98  E-value=0.04  Score=51.93  Aligned_cols=30  Identities=40%  Similarity=0.400  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...-.++|+|..+||||||++.|++..
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444479999999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK01889 GTPase RsgA; Reviewed

Probab=92.97  E-value=0.22  Score=51.11  Aligned_cols=48  Identities=15%  Similarity=0.011  Sum_probs=32.5

Q ss_pred             cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +..+|.+++|+++..+.....++.++..++.     .+.+.+||+||+||.+.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~-----~~i~piIVLNK~DL~~~  157 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE-----SGAEPVIVLTKADLCED  157 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH-----cCCCEEEEEEChhcCCC
Confidence            4678999999999643223334444444444     45677999999999765

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=92.92  E-value=0.04  Score=50.94  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=22.3

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ++...-.|+|+|+.++||||||+.+..
T Consensus        17 ~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          17 SIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            344445799999999999999999864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=92.92  E-value=0.042  Score=51.58  Aligned_cols=29  Identities=28%  Similarity=0.328  Sum_probs=24.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..++|||||++.|++-.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            34444479999999999999999999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=92.91  E-value=0.042  Score=51.39  Aligned_cols=29  Identities=41%  Similarity=0.358  Sum_probs=23.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...-.++|+|..++|||||++.|++..
T Consensus        23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33344479999999999999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=92.90  E-value=0.044  Score=52.07  Aligned_cols=29  Identities=34%  Similarity=0.366  Sum_probs=24.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..++|||||++.|.+..
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          22 SVRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            34444479999999999999999999864

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK08118 topology modulation protein; Reviewed

Probab=92.90  E-value=0.064  Score=49.00  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+|.|+|.|+||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999865

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=92.90  E-value=0.043  Score=50.18  Aligned_cols=30  Identities=37%  Similarity=0.433  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...-.++|+|..++|||||++.|++..
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444579999999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=92.89  E-value=0.041  Score=48.84  Aligned_cols=29  Identities=41%  Similarity=0.486  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..++|||||++.|++..
T Consensus        22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          22 TINPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34444478999999999999999998864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=92.88  E-value=0.046  Score=51.22  Aligned_cols=30  Identities=37%  Similarity=0.350  Sum_probs=24.6

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...-.++|+|..++|||||++.|.+..
T Consensus        20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            344444579999999999999999999864

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=92.86  E-value=0.043  Score=49.59  Aligned_cols=30  Identities=33%  Similarity=0.337  Sum_probs=24.7

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.++..-.++|+|..++|||||++.|.+..
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          21 LSVRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444579999999999999999999865

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=92.84  E-value=0.058  Score=48.02  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=19.8

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+++|+.|+|||||+..|.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=92.83  E-value=0.042  Score=51.95  Aligned_cols=29  Identities=28%  Similarity=0.308  Sum_probs=24.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|..+||||||++.|.+..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          22 DIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            33344479999999999999999999875

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=92.81  E-value=0.047  Score=52.62  Aligned_cols=31  Identities=32%  Similarity=0.386  Sum_probs=25.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAKP  297 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~  297 (421)
                      ++++..-.++|+|..++|||||++.|++..+
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4445555799999999999999999998753

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=92.81  E-value=0.047  Score=51.89  Aligned_cols=30  Identities=30%  Similarity=0.378  Sum_probs=24.4

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP  297 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~  297 (421)
                      ++...-.++|+|..++|||||++.|++..+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          27 SVPKGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            334444799999999999999999998643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=92.80  E-value=0.043  Score=50.88  Aligned_cols=29  Identities=28%  Similarity=0.217  Sum_probs=24.1

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++..-.++|+|..++|||||++.|.+..
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         22 TFLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            33444479999999999999999999864

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=92.76  E-value=0.047  Score=50.64  Aligned_cols=29  Identities=24%  Similarity=0.288  Sum_probs=24.3

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...-.++|+|..++|||||++.|++..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        22 TLNAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34444579999999999999999999864

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=92.74  E-value=0.047  Score=50.79  Aligned_cols=30  Identities=33%  Similarity=0.284  Sum_probs=24.7

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...-.++|+|..++|||||++.|.+..
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344444579999999999999999999864

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=92.72  E-value=0.078  Score=43.92  Aligned_cols=23  Identities=35%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+.|+|+|++||||++..|...-
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        4 VILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHHhcc
Confidence            58899999999999999998754

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=92.68  E-value=0.045  Score=52.70  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=23.5

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+...-.++|+|..+||||||++.|++.
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         28 EFEQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3444447999999999999999999975

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=92.68  E-value=0.053  Score=50.21  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=22.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +..-.++|+|..+||||||++.|++-.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            333479999999999999999999864

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.66  E-value=0.051  Score=52.26  Aligned_cols=30  Identities=30%  Similarity=0.313  Sum_probs=24.7

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..-.++|+|..++|||||++.|++..
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         24 LEIPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            344444579999999999999999999864

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=92.65  E-value=0.07  Score=49.49  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=20.5

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +|.|+|.|||||||+-..|+..
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	421
1lnz_A	342	Structure Of The Obg Gtp-Binding Protein Length = 3		3e-32
1udx_A	416	Crystal Structure Of The Conserved Protein Tt1381 F		4e-30
1jal_A	363	Ychf Protein (Hi0393) Length = 363		1e-10
1wxq_A	397	Crystal Structure Of Gtp Binding Protein From Pyroc		1e-09
2dby_A	368	Crystal Structure Of The Gtp-Binding Protein Ychf I		2e-09
2dwq_A	368	Thermus Thermophilus Ychf Gtp-Binding Protein Lengt		2e-09
4a9a_A	376	Structure Of Rbg1 In Complex With Tma46 Dfrp Domain		6e-09
2ohf_A	396	Crystal Structure Of Human Ola1 In Complex With Amp		1e-08
2e87_A	357	Crystal Structure Of Hypothetical Gtp-Binding Prote		2e-08
1ni3_A	392	Structure Of The Schizosaccharomyces Pombe Ychf Gtp		2e-05

>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein Length = 342

Iteration: 1
 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 165/340 (48%), Gaps = 62/340 (18%)
Query: 76  YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD---FDGSLILP 132
           + D+V + V+ GDGG+G V                         +F+R+     G     
Sbjct: 2   FVDQVKVYVKGGDGGNGXV-------------------------AFRREKYVPKGGPAGG 36
Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVP 192
            GG GGDVV   DEG  TL +F  K+ + A RG +        S+ + G  A    I VP
Sbjct: 37  DGGKGGDVVFEVDEGLRTLXDFRYKKHFKAIRGEHG------XSKNQHGRNADDXVIKVP 90
Query: 193 LGTVVKHKRGK-LFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTNIMRDD 249
            GTVV     K + +DL   G   ++ARGGRGG   S    P N   +   L+ N     
Sbjct: 91  PGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQ---LSEN----- 142
Query: 250 TDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP 309
                  G+ G+E  + L L+V+ADVGLVG P+ GKSTLL+ ++ AKP IADY FTTL+P
Sbjct: 143 -------GEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVP 195
Query: 310 NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAA- 368
           NLG ++ D              ADLPGLIEGAH G GLG  F             ID + 
Sbjct: 196 NLGXVETDD-------GRSFVXADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDXSG 248
Query: 369 --AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
               +P +DY T+ +EL  YN    ERP I+V NK D PE
Sbjct: 249 LEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKXDXPE 288

>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From Thermus Thermophilus Hb8 Length = 416

Iteration: 1
 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 174/356 (48%), Gaps = 64/356 (17%)
Query: 76  YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDF---DGSLILP 132
           + D ++ITV +G GG GAV                         SF+R+     G     
Sbjct: 2   FQDVLVITVAAGRGGDGAV-------------------------SFRREKFVPKGGPDGG 36
Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQL-RGGLAAPTLRIPV 191
            GG GG V + A    D+L    +KR Y A+ G +    G  S Q  RGG     L I V
Sbjct: 37  DGGRGGSVYLRARGSVDSLSRL-SKRTYKAEDGEH----GRGSQQHGRGG---EDLVIEV 88
Query: 192 PLGT-VVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDT 250
           P GT V     G+L +DL   G  VLVARGG GG   +      R+              
Sbjct: 89  PRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQ-------------A 135
Query: 251 DKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN 310
            +    G+ GE+  L L L ++ADVGLVG PNAGKS+LLAA+T A P IA YPFTTL PN
Sbjct: 136 PRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN 195
Query: 311 LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE 370
           LG ++       E++    TLAD+PG+IEGA  GKGLG  F             +DAA E
Sbjct: 196 LGVVEVSEE---ERF----TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE 248
Query: 371 NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE-----MYDDSSSRQGIGFNP 421
            P+    T+++E+  Y+P  L RP +V LNK+DL E        D+ +R+G+   P
Sbjct: 249 -PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLP 303

>pdb|1JAL|A Chain A, Ychf Protein (Hi0393) Length = 363

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG-DPTLG--AEKYSSEATL 331
            G+VGLPN GKSTL  A+T A  + A+YPF T+ PN G +   DP L   AE    E  L
Sbjct: 5   CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64
Query: 332 ------ADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXID----------AAAENPVND 375
                  D+ GL+ GA  G+GLG  F             +           A   +P++D
Sbjct: 65  PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDD 124
Query: 376 YRTVKEELRMYNPDYLER 393
             T+  EL + + D  ER
Sbjct: 125 IDTINTELALADLDSCER 142

>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus Horikoshii Ot3 Length = 397

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 30/177 (16%)
Query: 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-----------RLDGDPTLGA 322
           ++G+VG PN GKST  +A T    +IA+YPFTT+  N+G            L   P    
Sbjct: 2   EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 323 EKYSSEATL-----ADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE------- 370
            +Y +   L      D+ GL+ GAH G+GLG  F             +DA  +       
Sbjct: 62  YEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTDPEGQP 121
Query: 371 ----NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQ---GIGFN 420
               +PV D   ++ E+  +    L + +     +I L ++  +S+  +   GIG N
Sbjct: 122 TDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVN 178

>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In Complexed With Gdp Length = 368

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 19/93 (20%)
Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA-- 332
           VG+VGLPN GKSTL  A+T A    A+YPF T+  N+G +   P      Y+ + T A  
Sbjct: 4   VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV---PLEDERLYALQRTFAKG 60
Query: 333 --------------DLPGLIEGAHLGKGLGRNF 351
                         D+ GL++GAH G+GLG  F
Sbjct: 61  ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQF 93

>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein Length = 368

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 19/93 (20%)
Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA-- 332
           VG+VGLPN GKSTL  A+T A    A+YPF T+  N+G +   P      Y+ + T A  
Sbjct: 4   VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV---PLEDERLYALQRTFAKG 60
Query: 333 --------------DLPGLIEGAHLGKGLGRNF 351
                         D+ GL++GAH G+GLG  F
Sbjct: 61  ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQF 93

>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain Length = 376

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEA 329
           VA VG VG P+ GKSTLL+ +T  + + A+Y FTTL  +P + R  G          ++ 
Sbjct: 72  VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG----------AKI 121
Query: 330 TLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEEL 383
            + DLPG+I+GA  G+G G+               +D     P++  + +++EL
Sbjct: 122 QMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILD--VNKPLHHKQIIEKEL 173

>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp Length = 396

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDPTLG--------AEKY 325
           +G+VGLPN GKST    +T+++    ++PF T+ PN  R+   D            A K 
Sbjct: 25  IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84
Query: 326 SSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE----------NPVND 375
            +   + D+ GL++GAH G+GLG  F               A  +          +P+ D
Sbjct: 85  PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRD 144
Query: 376 YRTVKEELRMYNPDYLERPFIVVLNKI 402
              + EEL++ + + +  P I  L K+
Sbjct: 145 IEIIHEELQLKDEEMI-GPIIDKLEKV 170

>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With Gdp Length = 357

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 229 EVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVS-LELILRVVADVGLVGLPNAGKST 287
           E+ E RR+       +++RD  D++  L +  E +  L ++   +  V + G PN GKST
Sbjct: 124 EIAELRRQ-FYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKST 182
Query: 288 LLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 339
           LL A+T AKP+IA YPFTT   N+G+ +     G  +Y     + D PGL++
Sbjct: 183 LLKALTTAKPEIASYPFTTRGINVGQFED----GYFRYQ----IIDTPGLLD 226

>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase Length = 392

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 20/138 (14%)
Query: 276 GLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRL---DGDPTLGAEKYSSEA-- 329
           G+VG PN GKST   AIT +   + A+YP+ T+ P   ++   D       E Y  ++  
Sbjct: 24  GIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83
Query: 330 ----TLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE----------NPVND 375
               T+ D+ GL +GA  G GLG  F             + A  +          +P+ D
Sbjct: 84  PAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRD 143
Query: 376 YRTVKEELRMYNPDYLER 393
              + +EL + + +++E+
Sbjct: 144 LSIIVDELLIKDAEFVEK 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	1e-104
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	1e-102
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	8e-41
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-35
1wxq_A	397	GTP-binding protein; structural genomics, riken st	2e-27
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	7e-19
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	3e-18
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	2e-17
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	1e-16
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	2e-12
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	5e-08
3llu_A	196	RAS-related GTP-binding protein C; structural geno	8e-08
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-08
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-07
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	7e-07
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-06
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	2e-06
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	4e-06
2fh5_B	214	SR-beta, signal recognition particle receptor beta	3e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	4e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	6e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	8e-05
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	1e-04
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	1e-04
2wji_A	165	Ferrous iron transport protein B homolog; membrane	7e-04

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score =  314 bits (807), Expect = e-104
 Identities = 132/335 (39%), Positives = 171/335 (51%), Gaps = 61/335 (18%)

Query: 78  DRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD-F--DGSLILPMG 134
           D ++ITV +G GG GAV                         SF+R+ F   G      G
Sbjct: 4   DVLVITVAAGRGGDGAV-------------------------SFRREKFVPKGGPDGGDG 38

Query: 135 GHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLG 194
           G GG V + A    D+L     KR Y A+ G +    G      + G     L I VP G
Sbjct: 39  GRGGSVYLRARGSVDSLSRLS-KRTYKAEDGEH----G--RGSQQHGRGGEDLVIEVPRG 91

Query: 195 TVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKV 253
           T V     G+L +DL   G  VLVARGG GG        N         +   +    + 
Sbjct: 92  TRVFDADTGELLADLTEEGQTVLVARGGAGGRG------NMH-----FVSPTRQ--APRF 138

Query: 254 LVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG- 312
              G+ GE+  L L L ++ADVGLVG PNAGKS+LLAA+T A P IA YPFTTL PNLG 
Sbjct: 139 AEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV 198

Query: 313 -RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN 371
             +  +            TLAD+PG+IEGA  GKGLG  FLRH+ RTR+L++V+D AA+ 
Sbjct: 199 VEVSEEERF---------TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLD-AADE 248

Query: 372 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
           P+    T+++E+  Y+P  L RP +V LNK+DL E
Sbjct: 249 PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342

 Score =  306 bits (787), Expect = e-102
 Identities = 134/340 (39%), Positives = 181/340 (53%), Gaps = 66/340 (19%)

Query: 78  DRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD-F--DGSLILPMG 134
           D+V + V+ GDGG+G V                         +F+R+ +   G      G
Sbjct: 4   DQVKVYVKGGDGGNGMV-------------------------AFRREKYVPKGGPAGGDG 38

Query: 135 GHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLG 194
           G GGDVV   DEG  TL++F  K+ + A RG +    G   S+ + G  A  + I VP G
Sbjct: 39  GKGGDVVFEVDEGLRTLMDFRYKKHFKAIRGEH----G--MSKNQHGRNADDMVIKVPPG 92

Query: 195 TVVKHK-RGKLFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTNIMRDDTD 251
           TVV      ++ +DL   G   ++ARGGRGG   S    P N   +++            
Sbjct: 93  TVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSEN---------- 142

Query: 252 KVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 311
                G+ G+E  + L L+V+ADVGLVG P+ GKSTLL+ ++ AKP IADY FTTL+PNL
Sbjct: 143 -----GEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL 197

Query: 312 G--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA 369
           G    D   +           +ADLPGLIEGAH G GLG  FLRH+ RTR++VHVID + 
Sbjct: 198 GMVETDDGRSF---------VMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSG 248

Query: 370 ---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
               +P +DY T+ +EL  YN    ERP I+V NK+D+PE
Sbjct: 249 LEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score =  143 bits (363), Expect = 8e-41
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 15/155 (9%)

Query: 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEK 324
           L  I      + L G PN GKS+ +  ++ A  D+  Y FTT    +G  D         
Sbjct: 22  LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK------- 74

Query: 325 YSSEATLADLPGLIEGAHLGKGLGR----NFLRHLRRTRLLVHVIDAAAENPVNDYRTVK 380
             ++  + D PGL++ A   +          L H+    +++ +ID  +E      +   
Sbjct: 75  -LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHIN--GVILFIID-ISEQCGLTIKEQI 130

Query: 381 EELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQ 415
                    +  +  ++  NKID   M   S   +
Sbjct: 131 NLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNK 165

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score =  133 bits (336), Expect = 1e-35
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 13/188 (6%)

Query: 222 RGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVS-LELILRVVADVGLVGL 280
           R      E+ E RR+    + + ++RD  D++  L +  E +  L ++   +  V + G 
Sbjct: 117 RYSNDPNEIAELRRQFYGRVAS-VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGH 175

Query: 281 PNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340
           PN GKSTLL A+T AKP+IA YPFTT   N+G+ +               + D PGL++ 
Sbjct: 176 PNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--------YFRYQIIDTPGLLDR 227

Query: 341 AHLGKGLG--RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVV 398
               +     +  L       L++++ D  +E+               + ++ + PF+VV
Sbjct: 228 PISERNEIEKQAILALRYLGNLIIYIFD-PSEHCGFPLEEQIHLFEEVHGEFKDLPFLVV 286

Query: 399 LNKIDLPE 406
           +NKID+ +
Sbjct: 287 INKIDVAD 294

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Length = 397

 Score =  111 bits (280), Expect = 2e-27
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 35/150 (23%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--------RLDGDPTLGAEKYS 326
           +G+VG PN GKST  +A T    +IA+YPFTT+  N+G               L     +
Sbjct: 3   IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCK---EL-GCSPN 58

Query: 327 SEAT------------LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---- 370
            +              + D+ GL+ GAH G+GLG  FL  LR    L+HV+DA  +    
Sbjct: 59  PQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPE 118

Query: 371 -------NPVNDYRTVKEELRMYNPDYLER 393
                  +PV D   ++ E+  +    L +
Sbjct: 119 GQPTDYHDPVEDIEFLEREIDYWIYGILSK 148

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Length = 396

 Score = 86.8 bits (216), Expect = 7e-19
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 27/142 (19%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 327
           +G+VGLPN GKST    +T+++    ++PF T+ PN         R D    L  + +  
Sbjct: 25  IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFD---FL-CQYHKP 80

Query: 328 E----ATLA--DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVI----D------AAAEN 371
                A L   D+ GL++GAH G+GLG  FL H+     + H+     D        + +
Sbjct: 81  ASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVD 140

Query: 372 PVNDYRTVKEELRMYNPDYLER 393
           P+ D   + EEL++ + + +  
Sbjct: 141 PIRDIEIIHEELQLKDEEMIGP 162

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Length = 392

 Score = 84.9 bits (211), Expect = 3e-18
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 28/143 (19%)

Query: 275 VGLVGLPNAGKSTLLAAITHA-KPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYS 326
            G+VG+PN GKST   AIT +   + A+YP+ T+ P          R D    L  E Y 
Sbjct: 23  TGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFD---WL-CEAYK 78

Query: 327 SE----ATLA--DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVI----D------AAAE 370
            +    A L   D+ GL +GA  G GLG  FL H+R    +  V+    D          
Sbjct: 79  PKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV 138

Query: 371 NPVNDYRTVKEELRMYNPDYLER 393
           +P+ D   + +EL + + +++E+
Sbjct: 139 DPIRDLSIIVDELLIKDAEFVEK 161

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Length = 363

 Score = 82.1 bits (204), Expect = 2e-17
 Identities = 51/132 (38%), Positives = 68/132 (51%), Gaps = 27/132 (20%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 327
            G+VGLPN GKSTL  A+T A  + A+YPF T+ PN G       RLD    L AE    
Sbjct: 5   CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLD---AL-AEIVKP 60

Query: 328 EATLA------DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVI----D------AAAEN 371
           E  L       D+ GL+ GA  G+GLG  FL ++R T  + HV+    +      A   +
Sbjct: 61  ERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKID 120

Query: 372 PVNDYRTVKEEL 383
           P++D  T+  EL
Sbjct: 121 PLDDIDTINTEL 132

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Length = 368

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 21/108 (19%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-------RLDGDPTLGAEKYSS 327
           VG+VGLPN GKSTL  A+T A    A+YPF T+  N+G       RL     L    ++ 
Sbjct: 4   VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLY---AL-QRTFAK 59

Query: 328 E--------ATLA--DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVI 365
                      +   D+ GL++GAH G+GLG  FL H+R    + HV+
Sbjct: 60  GERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 19/136 (13%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS-SEATLAD 333
           +G+VG  N+GK++L  ++T     +    FTT+          P   A   +  +  L D
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM---------SPKRYAIPINNRKIMLVD 232

Query: 334 LPGLIEGAHLGKGLGRNF---LRHLRRTRLLVHVIDAAAENPVND--YRTVKEELRMYNP 388
             G I    +   +   F   L   + +  L+ VID+     +     ++  E LR    
Sbjct: 233 TVGFIR--GIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV 290

Query: 389 DYLERPFIVVLNKIDL 404
               +P +V LNKID 
Sbjct: 291 S--GKPILVTLNKIDK 304

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333
           + + G  N GKS+ + A+      I +DY  TT  P    ++  P           TL D
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVD 89

Query: 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 393
            PGL +   LG+       R   R    + V D +A  P  D   V    +      +E 
Sbjct: 90  TPGLDDVGELGRLRVEKARRVFYRADCGILVTD-SAPTPYEDD--VVNLFK-----EMEI 141

Query: 394 PFIVVLNKIDL 404
           PF+VV+NKID+
Sbjct: 142 PFVVVVNKIDV 152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 70/431 (16%), Positives = 125/431 (29%), Gaps = 126/431 (29%)

Query: 23  HSYNKILFNNQLIFKSNVLKYENLRYDSISCRHTRTRESNSTSPAT---LVKEPHKYFD- 78
           + Y  IL   +  F  N        +D   C+  +    +  S      ++         
Sbjct: 16  YQYKDILSVFEDAFVDN--------FD---CKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 79  RVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKEN-PWKKSSFKRDFDGSLILPMGGHG 137
             L             L    +  V K   ++ + N  +  S  K +       P     
Sbjct: 65  LRLFW----------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ----P----S 106

Query: 138 GDVVIYADEGKDTLLEFHNK----RRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPL 193
               +Y ++ +D L   +N      +YN  R            +LR  L    LR   P 
Sbjct: 107 MMTRMYIEQ-RDRL---YNDNQVFAKYNVSRLQPYL-------KLRQALL--ELR---PA 150

Query: 194 GTVVKHKRGKLFSDLAHPGDEVLVARGGR---------GGISLLEV-----PENRRKRMT 239
             V+    G L S     G   +                 I  L +     PE   + + 
Sbjct: 151 KNVLID--GVLGS-----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 240 TLTTNIM-----RDDTDKVLVLGQHGEEVSLE------------LILRVVADVGLVGLPN 282
            L   I      R D    + L  H  +  L             L+L  V +       N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---N 260

Query: 283 A--GKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA-------- 332
           A      +L  +T     + D+       ++  LD   ++       ++ L         
Sbjct: 261 AFNLSCKIL--LTTRFKQVTDFLSAATTTHI-SLD-HHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 333 DLP-----------GLIEGAHLGKGLGR-NFLRHLRRTRLLVHVIDAAAEN--PVNDYRT 378
           DLP            +I    +  GL   +  +H+   +L   +I+++     P  +YR 
Sbjct: 317 DLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEP-AEYRK 373

Query: 379 VKEELRMYNPD 389
           + + L ++ P 
Sbjct: 374 MFDRLSVFPPS 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 6e-08
 Identities = 44/363 (12%), Positives = 96/363 (26%), Gaps = 124/363 (34%)

Query: 120 SFKRDFDGSLILPMGGHGGDV---VIYADEGKDTLLEFHNKRRYN------AKRGGNV-- 168
           +F  +FD   +        D+   ++  +E    ++                 +   +  
Sbjct: 28  AFVDNFDCKDVQ-------DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 169 --------DSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARG 220
                    +   L S ++     P++        +   +R +L++D     ++V     
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMT-----RMYIEQRDRLYND-----NQVFAKY- 129

Query: 221 GRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGL 280
                    V   R +    L   ++                      LR   +V + G+
Sbjct: 130 --------NVS--RLQPYLKLRQALLE---------------------LRPAKNVLIDGV 158

Query: 281 PNAGKSTLLAAITHAKPDIADYPFTTLMP------NLGRLDGDP-------TLGAEKYSS 327
             +GK+ +   +         Y     M       NL   +           L  +   +
Sbjct: 159 LGSGKTWVALDV------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 328 EATLADLP-GLIEGAHLGKGLGRNFLRHLRRTR-LLV--HV-----IDA----------- 367
             + +D    +    H  +   R  L+       LLV  +V      +A           
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 368 -------AAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI--DLPEMYDDSSSRQGIG 418
                          + ++        PD ++   +  L+    DLP        R+ + 
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--------REVLT 324

Query: 419 FNP 421
            NP
Sbjct: 325 TNP 327

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 28/157 (17%), Positives = 46/157 (29%), Gaps = 23/157 (14%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG----D-PTLGAEKYSSEA 329
           +   G  N GKSTL+  +T  K      P  T              D P  G      + 
Sbjct: 4   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 63

Query: 330 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTV----KEELRM 385
               +   I               + +   + V V+D  A   +            ++  
Sbjct: 64  VQERIKDEIVHF---------IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEF 114

Query: 386 YNPDYLER---PFIVVLNKIDLPEMYDDSSSRQGIGF 419
           Y   +L     P IV +NK+D  +   +  +     F
Sbjct: 115 Y--QFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKF 149

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 51.5 bits (123), Expect = 8e-08
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 22/145 (15%)

Query: 277 LVGLPNAGKSTLLAAITH-AKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA--D 333
           L+GL  +GKS++   + H   P+   +  +T       +           SS       D
Sbjct: 25  LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDI---------SNSSFVNFQIWD 75

Query: 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYL 391
            PG ++          ++    R T  L++VIDA  +    +        +    NPD  
Sbjct: 76  FPGQMD----FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPD-- 129

Query: 392 ERPFIVVLNKIDL-PEMYDDSSSRQ 415
              F V ++K+D   + +   + R 
Sbjct: 130 -MNFEVFIHKVDGLSDDHKIETQRD 153

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 52.7 bits (126), Expect = 8e-08
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 26/141 (18%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEK----YSSEAT 330
           + L+G   +GKS++ + I        D                 T+  E     +    T
Sbjct: 6   LLLMGRSGSGKSSMRSIIFS-NYSAFDTRRLG-----------ATIDVEHSHLRFLGNMT 53

Query: 331 LA--DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVND---YRTVKEELRM 385
           L   D  G            +      +  ++L+HV D  +   + D   +    ++LR 
Sbjct: 54  LNLWDCGGQDVFME--NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK 111

Query: 386 YNPDYLERPFIVVLNKIDLPE 406
           Y+PD       V+L+K+DL +
Sbjct: 112 YSPD---AKIFVLLHKMDLVQ 129

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 19/131 (14%)

Query: 277 LVGLPNAGKSTLLAAITHA-KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335
           L+G+   GKS++   + H  +P    Y  +T  P+L        L          + +LP
Sbjct: 4   LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDL---------AVMELP 54

Query: 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLER 393
           G +           +  R  +    LV+VID+     N + +   + E     NP     
Sbjct: 55  GQLN----YFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPS---I 107

Query: 394 PFIVVLNKIDL 404
              V+++K+D 
Sbjct: 108 NIEVLIHKVDG 118

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 50.1 bits (119), Expect = 7e-07
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 24/146 (16%)

Query: 264 SLELILRVVADVGLVGLPNAGKSTLLAAIT---HAKPDIA--DYPFTTLMPNLGRLDGDP 318
           +L+ I   V +V + G   +GKS+ +  +    + +   A       T+  +  +    P
Sbjct: 61  ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 120

Query: 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRT 378
            +            DLPG+             +L  ++       +I +A     ND   
Sbjct: 121 NV---------VFWDLPGI----GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDI 167

Query: 379 VKEELRMYNPDYLERPFIVVLNKIDL 404
            K    M      ++ F  V  K+D 
Sbjct: 168 AKAISMM------KKEFYFVRTKVDS 187

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 35/159 (22%)

Query: 266 ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKY 325
           E+  ++V      G   +GK+T L  I    P+       +L       + + TL     
Sbjct: 12  EINFKIV----YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSL-----ATEDERTLFF--- 59

Query: 326 SSEATLADLPGLIEGAHLGKGL--------GRNFLRHLRRTRL-----LVHVIDAAAENP 372
                  D   L  G   G           G+ F    R+  L     +V V D+A    
Sbjct: 60  -------DFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL 112

Query: 373 VND---YRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408
             +    R ++E L  Y     + P ++ +NK DLP+  
Sbjct: 113 RANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL 151

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 35/138 (25%), Positives = 49/138 (35%), Gaps = 26/138 (18%)

Query: 275 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS 327
           V +VG PN GKSTLL        A    +P       TT     G L             
Sbjct: 10  VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ------TTRKRLRGILTEG--------RR 55

Query: 328 EATLADLPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 386
           +    D PGL +    LG+ + +     L     +V V+D        D   V   L+  
Sbjct: 56  QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPL 114

Query: 387 NPDYLERPFIVVLNKIDL 404
                + P ++V NK+D 
Sbjct: 115 VG---KVPILLVGNKLDA 129

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 28/140 (20%)

Query: 275 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS 327
           V +VG PN GKSTLL        +I   K        TT M    R+ G   +  E   +
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGTKVSIISPKAG------TTRM----RVLGVKNIPNE---A 59

Query: 328 EATLADLPGLIEGAH---LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR 384
           +    D PG+ E      LG  +     + L    +++ +IDA       D    +  ++
Sbjct: 60  QIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK 119

Query: 385 MYNPDYLERPFIVVLNKIDL 404
                 L +P IVV+NKID 
Sbjct: 120 P-----LNKPVIVVINKIDK 134

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336
            VGL ++GK+ L   +   +        T++  +         +   + +S  TL DLPG
Sbjct: 12  FVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIY----KVNNNRGNS-LTLIDLPG 63

Query: 337 LIEGAHLGKGLGRNFLRH-LRRTRLLVHVIDAAAENPVNDYRTVKEELR--MYNPDYLER 393
                H  + L    L       R +V V+D+AA     + + V E L   + +   L+ 
Sbjct: 64  -----H--ESLRFQLLDRFKSSARAVVFVVDSAAFQ--REVKDVAEFLYQVLIDSMALKN 114

Query: 394 --PFIVVLNKIDLP 405
               ++  NK D+ 
Sbjct: 115 SPSLLIACNKQDIA 128

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 26/136 (19%)

Query: 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336
           + G  N+GK++LL  +T              + +       P   A+   S  TL D PG
Sbjct: 17  IAGPQNSGKTSLLTLLTTDS-------VRPTVVSQE-----PLSAADYDGSGVTLVDFPG 64

Query: 337 LIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPDYLER 393
                H  L   L        +  + L+ ++D+  +       T  E L  + +      
Sbjct: 65  -----HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD--PKKLTTTAEFLVDILSITESSC 117

Query: 394 ----PFIVVLNKIDLP 405
                 ++  NK +L 
Sbjct: 118 ENGIDILIACNKSELF 133

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 35/162 (21%), Positives = 54/162 (33%), Gaps = 61/162 (37%)

Query: 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGR--------LDGD 317
           ++VV    + G PNAGKS+LL A+     + A   D   TT      R        +DG 
Sbjct: 5   MKVV----IAGRPNAGKSSLLNALAGR--EAAIVTDIAGTT------RDVLREHIHIDGM 52

Query: 318 PTLGAEKYSSEATLADLPGL------IEGAHLGKGLGRNFLRHLRRTR-------LLVHV 364
           P            + D  GL      +E   +G          + R          ++ +
Sbjct: 53  P----------LHIIDTAGLREASDEVE--RIG----------IERAWQEIEQADRVLFM 90

Query: 365 IDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406
           +D    + V+      E +          P  VV NK D+  
Sbjct: 91  VDGTTTDAVDPAEIWPEFIARLPAK---LPITVVRNKADITG 129

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 26/136 (19%)

Query: 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336
           + G  N+GK++LL  +T              + +       P   A+   S  TL D PG
Sbjct: 53  IAGPQNSGKTSLLTLLTTDS-------VRPTVVSQE-----PLSAADYDGSGVTLVDFPG 100

Query: 337 LIEGAHLG-KGLGRNFLR-HLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPDYLER 393
                H+  +    ++L+   +  + L+ ++D+  +       T  E L  + +      
Sbjct: 101 -----HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK--KLTTTAEFLVDILSITESSC 153

Query: 394 ----PFIVVLNKIDLP 405
                 ++  NK +L 
Sbjct: 154 ENGIDILIACNKSELF 169

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 43.7 bits (104), Expect = 8e-05
 Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 65/206 (31%)

Query: 229 EVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTL 288
           +V    R  +T     + R + ++++   QHG       I+       + G PNAGKSTL
Sbjct: 197 DVEFQSRDELTMQIETL-RSEVNRLIDSYQHGR------IVSEGVSTVIAGKPNAGKSTL 249

Query: 289 LAAITHAKPDIA---DYPFTTLMPNLGR--------LDGDPTLGAEKYSSEATLADLPGL 337
           L  +     + A     P TT      R         D               L D  GL
Sbjct: 250 LNTLLGQ--ERAIVSHMPGTT------RDYIEECFIHDKTM----------FRLTDTAGL 291

Query: 338 ------IEGAHLGKGLGRNFLRHLRRTR-------LLVHVIDAAAENPVNDYRTVKEELR 384
                 IE  H G          +RR+R       L+++++D   E  ++D  T   EL+
Sbjct: 292 REAGEEIE--HEG----------IRRSRMKMAEADLILYLLDLGTE-RLDDELTEIRELK 338

Query: 385 MYNPDYLERPFIVVLNKIDLPEMYDD 410
             +P      F+ V NK+D     D 
Sbjct: 339 AAHPA---AKFLTVANKLDRAANADA 361

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 30/139 (21%)

Query: 275 VGLVGLPNAGKSTLL-------AAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS 327
           + +VG PN GKSTLL        +IT  K        TT    +G               
Sbjct: 11  IAIVGRPNVGKSTLLNKLLGQKISITSRKAQ------TTRHRIVGIHTEGA--------Y 56

Query: 328 EATLADLPGLIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM 385
           +A   D PGL       + + + +     +    L++ V++     P ++   V  +LR 
Sbjct: 57  QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEM--VLNKLR- 113

Query: 386 YNPDYLERPFIVVLNKIDL 404
                 + P I+ +NK+D 
Sbjct: 114 ----EGKAPVILAVNKVDN 128

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 69/217 (31%)

Query: 229 EVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTL 288
           ++P    + + +   NI   +  ++L     GE      +LR    V +VG PN GKS+L
Sbjct: 188 DLPPLDDEAIISDIENI-AAEISQLLATKDKGE------LLRTGLKVAIVGRPNVGKSSL 240

Query: 289 LAAITHAKPDIA---DYPFTTLMPNLGR--------LDGDPTLGAEKYSSEATLADLPGL 337
           L A + +  D A   D P TT      R        + G P            + D  G+
Sbjct: 241 LNAWSQS--DRAIVTDLPGTT------RDVVESQLVVGGIP----------VQVLDTAGI 282

Query: 338 ------IEGAHLGKGLGRNFLRHLRRTR-------LLVHVIDAAAENPVNDYRTVKEELR 384
                 +E   +G          + R+R       L++  IDAA      D + + E+++
Sbjct: 283 RETSDQVE--KIG----------VERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK 329

Query: 385 MYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFNP 421
                   RP I+V+NKIDL E    +S         
Sbjct: 330 -------HRPLILVMNKIDLVEKQLITSLEYPENITQ 359

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 25/137 (18%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
           + L+G PN GKST+  A+T     I ++P  T+    G  + +          +  + DL
Sbjct: 6   IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE--------KFKVVDL 57

Query: 335 PGL--IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-ENPVNDYRT--VKEELRMYNPD 389
           PG+  +    + + + R+++ +  +  L+V+++DA A E   N Y T  + E        
Sbjct: 58  PGVYSLTANSIDEIIARDYIIN-EKPDLVVNIVDATALER--NLYLTLQLME-------- 106

Query: 390 YLERPFIVVLNKIDLPE 406
            +    ++ LNK+DL +
Sbjct: 107 -MGANLLLALNKMDLAK 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	100.0
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	100.0
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.89
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.86
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.74
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.73
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.7
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.7
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.7
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.69
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.69
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.67
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.66
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.66
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.66
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.65
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.65
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.64
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.64
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.64
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.63
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.63
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.63
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.63
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.63
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.63
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.62
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.62
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.62
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.61
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.61
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.61
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.61
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.61
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.61
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.61
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.61
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.61
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.61
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.6
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.6
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.6
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.6
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.6
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.6
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.6
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.6
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.6
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.6
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.6
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.6
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.6
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.59
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.59
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.59
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.59
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.59
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.59
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.59
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.59
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.59
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.58
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.58
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.58
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.58
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.58
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.58
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.58
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.58
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.58
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.58
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.58
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.58
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.58
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.58
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.58
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.57
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.57
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.57
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.57
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.57
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.57
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.57
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.57
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.57
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.57
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.57
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.57
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.56
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.56
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.56
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.56
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.56
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.56
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.56
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.56
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.56
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.55
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.55
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.55
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.55
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.55
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.55
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.55
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.55
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.55
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.54
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.54
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.54
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.54
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.54
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.54
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.54
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.54
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.54
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.53
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.53
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.53
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.53
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.53
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.53
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.53
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.53
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.52
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.52
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.52
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.52
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.51
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.51
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.51
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.5
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.49
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.49
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.24
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.49
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.49
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.48
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.48
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.48
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.48
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.46
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.45
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.45
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.45
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.44
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.44
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.44
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.43
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.42
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.42
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.41
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.4
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.4
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.39
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.39
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.39
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.38
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.37
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.37
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.35
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.35
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.34
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.33
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.33
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.32
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.32
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.32
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.3
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.3
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.3
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.29
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.29
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.28
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.28
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.27
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.27
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.26
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.25
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.25
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.24
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.24
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.23
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.22
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.2
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.18
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.16
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.13
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.13
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.13
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.12
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.11
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.08
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.01
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.99
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.98
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.91
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.9
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.8
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.78
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.68
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.63
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.61
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.6
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.56
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.52
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.49
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.39
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.32
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.18
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.12
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.09
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.9
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.78
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.54
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.53
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.51
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.47
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.33
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	97.31
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.24
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.21
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.2
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.2
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.1
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.1
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	97.03
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.96
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.93
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.78
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.77
2xxa_A	433	Signal recognition particle protein; protein trans	96.77
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.74
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.73
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.6
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.59
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.49
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.49
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.46
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.44
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.36
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.34
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.23
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.07
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.84
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.78
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.52
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.35
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.19
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.11
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.96
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.91
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.8
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.61
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.48
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.47
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	94.36
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.31
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.15
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.13
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	94.12
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	93.95
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	93.83
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.67
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.63
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	93.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	93.6
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	93.59
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	93.56
1g6h_A	257	High-affinity branched-chain amino acid transport	93.55
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.34
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.33
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.32
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.3
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.27
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.24
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.24
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.2
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.2
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.18
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.17
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.15
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.06
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	93.06
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.01
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	92.99
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.96
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	92.96
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	92.95
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.94
2ghi_A	260	Transport protein; multidrug resistance protein, M	92.93
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.92
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	92.91
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.85
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.82
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	92.8
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	92.79
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	92.78
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.77
3cwq_A	209	Para family chromosome partitioning protein; alpha	92.73
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	92.69
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.64
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	92.61
4a74_A	231	DNA repair and recombination protein RADA; hydrola	92.56
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	92.51
2eyu_A	261	Twitching motility protein PILT; pilus retraction	92.46
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	92.46
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	92.42
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	92.37
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	92.36
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	92.35
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	92.32
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.28
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	92.16
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.08
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.01
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	91.88
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	91.74
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.61
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.57
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	91.57
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	91.52
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	91.46
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	91.46
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	91.45
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	91.41
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.31
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	91.3
1via_A	175	Shikimate kinase; structural genomics, transferase	91.27
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	91.15
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.14
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	91.01
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	90.99
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	90.99
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	90.88
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	90.84
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	90.81
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	90.77
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	90.69
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	90.68
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	90.67
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	90.66
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	90.65
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	90.63
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	90.61
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	90.53
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	90.5
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	90.49
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	90.48
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	90.46
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	90.46
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	90.44
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	90.32
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	90.28
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	90.25
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	90.13
2ewv_A	372	Twitching motility protein PILT; pilus retraction	90.12
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	90.1
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	90.01
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	89.99
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	89.98
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	89.97
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	89.96
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	89.96
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	89.94
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	89.94
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	89.93
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	89.86
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	89.79
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	89.67
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	89.61
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	89.58
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	89.53
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	89.48
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	89.46
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	89.45
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	89.43
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	89.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	89.36
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	89.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	89.23
3kta_A	182	Chromosome segregation protein SMC; structural mai	89.23
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	89.11
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	89.11
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	89.06
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	88.93
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	88.9
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	88.89
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	88.86
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	88.81
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	88.81
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	88.77
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	88.77
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	88.76
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	88.75
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	88.73
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	88.7
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	88.63
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	88.53
2vli_A	183	Antibiotic resistance protein; transferase, tunica	88.47
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	88.31
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	88.3
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	88.29
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	88.24
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	88.22
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	88.21
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	88.16
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	88.12
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	88.09
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	88.04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	87.94
2cvh_A	220	DNA repair and recombination protein RADB; filamen	87.78
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	87.74
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	87.68
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	87.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	87.62
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	87.61
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	87.58
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	87.58
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	87.45
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	87.43
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	87.4
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	87.38
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	87.25
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	87.24
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	87.13
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	87.12
2og2_A	359	Putative signal recognition particle receptor; nuc	87.09
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	87.04
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	86.91
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	86.85
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	86.82
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	86.75
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	86.73
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	86.64
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	86.56
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	86.55
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	86.47
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	86.44
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	86.3
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	86.2
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	86.07
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	86.01
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	85.98
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	85.92
3end_A	307	Light-independent protochlorophyllide reductase ir	85.91
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	85.82
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	85.66
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	85.63
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	85.29
1tue_A	212	Replication protein E1; helicase, replication, E1E	85.22
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	85.04
3bos_A	242	Putative DNA replication factor; P-loop containing	84.76
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	84.76
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	84.65
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	84.53
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	84.52
3co5_A	143	Putative two-component system transcriptional RES	84.45
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	84.37
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	84.3
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	84.27
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	84.2
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	84.06
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	83.81
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	83.73
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	83.61
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	83.31
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	83.29
3pvs_A	447	Replication-associated recombination protein A; ma	83.21
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	83.1
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	83.02
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	82.94
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	82.9
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	82.83
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	82.8
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	82.71
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	82.13
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	82.05
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	81.98
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	81.71
2chg_A	226	Replication factor C small subunit; DNA-binding pr	81.68
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	81.68
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	81.56
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	81.43
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	81.4
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	81.32
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	80.99
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	80.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	80.79
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	80.78
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	80.72
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	80.63
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	80.48
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	80.33
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	80.12
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	80.07

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=100.00  E-value=3.7e-70  Score=549.62  Aligned_cols=292  Identities=45%  Similarity=0.727  Sum_probs=265.4

Q ss_pred             CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655           75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF  154 (421)
Q Consensus        75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~  154 (421)
                      +|+|+++|+|+||+|||||+|              |+||||    +++||||||    |||+||||||+||++++||++|
T Consensus         1 ~f~d~~~i~~~~g~gg~g~~~--------------~~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~   58 (342)
T 1lnz_A            1 MFVDQVKVYVKGGDGGNGMVA--------------FRREKY----VPKGGPAGG----DGGKGGDVVFEVDEGLRTLMDF   58 (342)
T ss_dssp             CEEEEEEEEEECCCCCCCCCC--------------BCCCSS----SCCCCBCCC----CCCCCCCEEEEECTTCCCSCGG
T ss_pred             CCcceEEEEEEecCCCCceee--------------eehhhc----ccCCCCCCC----CCCCCCeEEEEeCCCcChHHHh
Confidence            599999999999999999997              778887    688999998    9999999999999999999999


Q ss_pred             cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655          155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN  233 (421)
Q Consensus       155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~  233 (421)
                      +++++|+|++|+||+      +++++|++|+|++|+||+||+|++ +++++++||++++|++++|+||.||.||.+|...
T Consensus        59 ~~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~  132 (342)
T 1lnz_A           59 RYKKHFKAIRGEHGM------SKNQHGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATP  132 (342)
T ss_dssp             GTCCEEECCCCCCCC------STTCCCCCCCCEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBT
T ss_pred             CccceEEcCCCCCCC------CCCCcCCCCCCEEEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCccccccc
Confidence            999999999999986      378899999999999999999999 5789999999999999999999999999877553


Q ss_pred             hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655          234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR  313 (421)
Q Consensus       234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~  313 (421)
                      .             +++|++++.|++||++.+.+||+.+++|+|||+||||||||||+|+++++.+++|+|||++|+.+.
T Consensus       133 ~-------------~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~  199 (342)
T 1lnz_A          133 A-------------NPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM  199 (342)
T ss_dssp             T-------------BSSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE
T ss_pred             c-------------ccccccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE
Confidence            2             234567789999999999999999999999999999999999999999999999999999999998


Q ss_pred             ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC---CCChhhHHHHHHHHHhcCCCC
Q 014655          314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDY  390 (421)
Q Consensus       314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~---~~~~~~~~~l~~eL~~~~~~l  390 (421)
                      +....       ..+++++||||+++.+++..++...|++|+++||++|||+|+++   .++.+++..+.++|..|.+.+
T Consensus       200 v~~~~-------~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l  272 (342)
T 1lnz_A          200 VETDD-------GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL  272 (342)
T ss_dssp             EECSS-------SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST
T ss_pred             EEeCC-------CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh
Confidence            87652       14799999999999988889999999999999999999999998   678888899999999998777


Q ss_pred             CCCCEEEEEeCCCCCCCCCchHHH
Q 014655          391 LERPFIVVLNKIDLPEMYDDSSSR  414 (421)
Q Consensus       391 ~~kP~IIVlNK~Dl~~~~e~~~~l  414 (421)
                      .++|+++|+||+|+....+..+.+
T Consensus       273 ~~~p~ilV~NK~Dl~~~~e~~~~l  296 (342)
T 1lnz_A          273 TERPQIIVANKMDMPEAAENLEAF  296 (342)
T ss_dssp             TTSCBCBEEECTTSTTHHHHHHHH
T ss_pred             cCCCEEEEEECccCCCCHHHHHHH
Confidence            889999999999998755444433

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=100.00  E-value=1.2e-63  Score=514.15  Aligned_cols=283  Identities=46%  Similarity=0.714  Sum_probs=256.7

Q ss_pred             CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655           75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF  154 (421)
Q Consensus        75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~  154 (421)
                      +|+|+++|+|+||+|||||+|              |+||||    +++||||||    |||+||||||+||++++||++|
T Consensus         1 ~f~d~~~i~~~~g~gg~g~~~--------------f~re~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~   58 (416)
T 1udx_A            1 MFQDVLVITVAAGRGGDGAVS--------------FRREKF----VPKGGPDGG----DGGRGGSVYLRARGSVDSLSRL   58 (416)
T ss_dssp             CCCSEEEEEEECCCCCCCCCC--------------BCCBTT----BSCCCBCCC----CCCCCCCEEEEECTTCCSSTTS
T ss_pred             CCcceEEEEEEecCCCCceee--------------eecccc----ccCCCCCCC----CCCCCCeEEEEeCCCcCchhhh
Confidence            599999999999999999997              778887    688999998    9999999999999999999999


Q ss_pred             cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655          155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN  233 (421)
Q Consensus       155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~  233 (421)
                       ++++|+|++|+||+      +++++|++|+|++|+||+||+|++ +++++++||++++|++++|+||.||+||.+|...
T Consensus        59 -~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~  131 (416)
T 1udx_A           59 -SKRTYKAEDGEHGR------GSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSP  131 (416)
T ss_dssp             -CSSCEECCCCCCCB------TTTBCCCCCCCEEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCS
T ss_pred             -hhceEEcCCCCCCC------CCCCcCCCCCCEEEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeecc
Confidence             88999999999986      378899999999999999999999 6789999999999999999999999999877553


Q ss_pred             hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655          234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR  313 (421)
Q Consensus       234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~  313 (421)
                      .             +++|++++.|++||+..+.++++.+++|+|||++||||||||++|++..+.+++++|||+.|+.+.
T Consensus       132 ~-------------~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~  198 (416)
T 1udx_A          132 T-------------RQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV  198 (416)
T ss_dssp             S-------------CSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE
T ss_pred             c-------------ccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE
Confidence            2             245667889999999999999999999999999999999999999999998999999999999998


Q ss_pred             ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCC
Q 014655          314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER  393 (421)
Q Consensus       314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k  393 (421)
                      +....       ...++++||||+++.+++..++...|++++++|+.+++|+|++ ..+.+++..++.++..+...+..+
T Consensus       199 V~~~~-------~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~  270 (416)
T 1udx_A          199 VEVSE-------EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRR  270 (416)
T ss_dssp             EECSS-------SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHS
T ss_pred             EEecC-------cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcC
Confidence            87642       1468999999999988888888889999999999999999998 667788888888888876555679


Q ss_pred             CEEEEEeCCCCCCC
Q 014655          394 PFIVVLNKIDLPEM  407 (421)
Q Consensus       394 P~IIVlNK~Dl~~~  407 (421)
                      |.++|+||+|+...
T Consensus       271 P~ILVlNKlDl~~~  284 (416)
T 1udx_A          271 PSLVALNKVDLLEE  284 (416)
T ss_dssp             CEEEEEECCTTSCH
T ss_pred             CEEEEEECCChhhH
Confidence            99999999999865

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.5e-24  Score=215.22  Aligned_cols=126  Identities=32%  Similarity=0.536  Sum_probs=111.0

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ...++|+|||+||||||||+|+|+++++.+++|||||++|+.|++.+.+        .+++++||||++++++++++++.
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--------~~i~l~D~pGl~~~a~~~~~~g~  141 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--------AKIQMLDLPGIIDGAKDGRGRGK  141 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--------EEEEEEECGGGCCC-----CHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--------cEEEEEeCCCccCCchhhhHHHH
Confidence            3457999999999999999999999999999999999999999998753        57999999999999999999999


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      .|+.+++.||+|++|+|++  ++..+.+.+..+|+.++..+.++|.++|+||+|..
T Consensus       142 ~~l~~i~~ad~il~vvD~~--~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          142 QVIAVARTCNLLFIILDVN--KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHHHHHHCSEEEEEEETT--SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             HHHHHHHhcCccccccccC--ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            9999999999999999998  46788889999999988877889999999999974

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.86  E-value=1.3e-24  Score=227.51  Aligned_cols=253  Identities=22%  Similarity=0.244  Sum_probs=167.5

Q ss_pred             CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhh
Q 014655           74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE  153 (421)
Q Consensus        74 ~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~  153 (421)
                      .+|+|++.|.+..|     +.|              |.+|++.               +-+||||.|+++  ..+++|++
T Consensus        86 ~~~iDe~~v~~~~~-----p~S--------------ft~Ed~v---------------e~~~hGg~~v~~--~~l~~l~~  129 (482)
T 1xzp_A           86 GEDVDEVVVVFYKS-----PKS--------------YTGEDMV---------------EVMCHGGPLVVK--KLLDLFLK  129 (482)
T ss_dssp             SCCCCEEEEEEECT-----TSS--------------SSSSCEE---------------EEEECSCHHHHH--HHHHHHHT
T ss_pred             CeeeeEEEEEEEeC-----CCc--------------CCCCCEe---------------eecCcCcHHHHH--HHHHHHHH
Confidence            46999999999997     665              6677762               256999999976  55788887


Q ss_pred             ccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCce---EEEecCCCCCCCCCC
Q 014655          154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDE---VLVARGGRGGISLLE  229 (421)
Q Consensus       154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~---~~va~GG~GG~gn~~  229 (421)
                      +   ....|+.|+..+         |...+|+            .| .+.+.++||.+...+   .++++++.|+.++..
T Consensus       130 ~---g~r~A~~Geft~---------raf~nGk------------~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~~~  185 (482)
T 1xzp_A          130 S---GARMAEPGEFTK---------RAFLNGK------------MDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFV  185 (482)
T ss_dssp             T---TCEECCTTHHHH---------HHHHTTS------------SCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHHHH
T ss_pred             c---CCEeCCCCCcCC---------cCCCcCC------------cCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhHHH
Confidence            6   456677777643         2233333            13 235778888765543   477889999888631


Q ss_pred             cchhhhhccccccccccccchhHHHhcCCCc-------cchhhhHHhhh-------------hceecccCCCCCChhHHH
Q 014655          230 VPENRRKRMTTLTTNIMRDDTDKVLVLGQHG-------EEVSLELILRV-------------VADVGLVGLPNAGKSTLL  289 (421)
Q Consensus       230 ~~~~~r~~~~~~~~~~~r~~~~~~~~~G~~G-------e~~~l~leLk~-------------i~~V~LVG~pNaGKSSLL  289 (421)
                        +..|+....+....  +....+.+. .++       +...+..+|+.             .++|+|+|.||||||||+
T Consensus       186 --~~~r~~l~~~~~~i--e~~idf~ee-i~~~~~~i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLl  260 (482)
T 1xzp_A          186 --DSLRRELIEVLAEI--RVELDYPDE-IETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLL  260 (482)
T ss_dssp             --HHHHHHHHHHHHHH--HHHHHSTTT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHH
T ss_pred             --HHHHHHHHHHHHHh--hhcCCCCcc-ccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHH
Confidence              11121111111100  000111111 111       11223333433             379999999999999999


Q ss_pred             HHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCccc-ccccccCchh-HHHHHhcccCCEEEEEee
Q 014655          290 AAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAHLGKGLG-RNFLRHLRRTRLLVHVID  366 (421)
Q Consensus       290 naLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGli-e~a~~~~gl~-~~fL~~i~radvIl~VvD  366 (421)
                      |+|++.+. .++++|+||.++....+..+        +..+.+|||||+. +....-+.++ ...+.+++.||++|+|+|
T Consensus       261 n~L~~~~~a~vs~~~gTT~d~~~~~i~~~--------g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD  332 (482)
T 1xzp_A          261 NRLLNEDRAIVTDIPGTTRDVISEEIVIR--------GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLD  332 (482)
T ss_dssp             HHHHHHTBCCCCCSSCCSSCSCCEEEEET--------TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEE
T ss_pred             HHHHCCCCCccCCCCCeeeeeEEEEEecC--------CeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEec
Confidence            99999874 46899999999988887754        2479999999998 6554333332 335688999999999999


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          367 AAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       367 ~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ++++...++.+ +++.+       .++|+++|+||+|+...
T Consensus       333 ~s~~~s~~~~~-il~~l-------~~~piivV~NK~DL~~~  365 (482)
T 1xzp_A          333 ASSPLDEEDRK-ILERI-------KNKRYLVVINKVDVVEK  365 (482)
T ss_dssp             TTSCCCHHHHH-HHHHH-------TTSSEEEEEEECSSCCC
T ss_pred             CCCCCCHHHHH-HHHHh-------cCCCEEEEEECcccccc
Confidence            99877666544 33333       25899999999999754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=7.5e-19  Score=179.61  Aligned_cols=113  Identities=40%  Similarity=0.696  Sum_probs=63.5

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCC-----CCCC-----------ccccccceEEecCCcc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-----PTLG-----------AEKYSSEATLADLPGL  337 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~-----~~~~-----------~~~~~~~i~iiDtPGl  337 (421)
                      +|+|||.||||||||+|+|++.+..++++||||.+++.+.+...     ..+.           ...-..++.++||||+
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~   81 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL   81 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence            79999999999999999999998666899999999999864311     0000           0000136999999999


Q ss_pred             cccccccCchhHHHHHhcccCCEEEEEeeCCCC-----------CChhhHHHHHHHHHhc
Q 014655          338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELRMY  386 (421)
Q Consensus       338 ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~-----------~~~~~~~~l~~eL~~~  386 (421)
                      .++++..++++..|+.+++.||++++|+|+++.           +|.++++.|..||..+
T Consensus        82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~  141 (397)
T 1wxq_A           82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYW  141 (397)
T ss_dssp             -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHH
Confidence            998888888988999999999999999999876           6777776666666543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=4.6e-18  Score=171.91  Aligned_cols=111  Identities=38%  Similarity=0.654  Sum_probs=85.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC---------CccccccceEEecCCcccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~---------~~~~~~~~i~iiDtPGlie~a~~  343 (421)
                      .+|+|||.||||||||+|+|++....+++|||||++|+.+.+......         +.......+.++||||+.++++.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            579999999999999999999998778999999999999987754210         00001136999999999999888


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCC----------CChhhHHHHHHHH
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEEL  383 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~----------~~~~~~~~l~~eL  383 (421)
                      .++++..|+.+++.||++++|+|+++.          ++.++++.+..||
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL  132 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL  132 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence            889999999999999999999999862          5667776666555

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.70  E-value=1.5e-17  Score=168.46  Aligned_cols=111  Identities=39%  Similarity=0.699  Sum_probs=87.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC--------CCcc-----ccccceEEecCCcccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--------LGAE-----KYSSEATLADLPGLIE  339 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~--------~~~~-----~~~~~i~iiDtPGlie  339 (421)
                      .+|+|||.||||||||+|+|++..+.+++|||||++|+.+.+.....        ....     .....+.++||||+.+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            47999999999999999999998877899999999999998754210        0000     0124699999999999


Q ss_pred             cccccCchhHHHHHhcccCCEEEEEeeCCCC----------CChhhHHHHHHHH
Q 014655          340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEEL  383 (421)
Q Consensus       340 ~a~~~~gl~~~fL~~i~radvIl~VvD~s~~----------~~~~~~~~l~~eL  383 (421)
                      +++..++++..|+.+++.||++++|+|+++.          +|.++++.+..||
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL  135 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETEL  135 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHH
Confidence            9988889999999999999999999999862          5666665555444

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.70  E-value=1.9e-17  Score=163.15  Aligned_cols=121  Identities=31%  Similarity=0.390  Sum_probs=94.5

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc---ccCchhH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH---LGKGLGR  349 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~---~~~gl~~  349 (421)
                      .|+++|.||||||||+|+|++.+..+ ++.+.||.....+.+....       ..+++++||||+.+...   .++.+..
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~-------~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-------EAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-------TEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC-------CCeEEEEECcCCCccccchhHHHHHHH
Confidence            59999999999999999999998765 8899999888777765431       24799999999976431   1223344


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+...+..+|++++|+|+++.....+...+.+.+..     .+.|+++|+||+|+..
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~  136 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIG  136 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSS
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCC
Confidence            456678899999999999987777776654666655     3689999999999983

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.70  E-value=4.7e-17  Score=141.22  Aligned_cols=134  Identities=30%  Similarity=0.395  Sum_probs=88.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      +++|+++|.+|||||||+++|.+.... ..+++.+|.+.....+...        +..+.++||||..+.......+...
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~   72 (161)
T 2dyk_A            1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--------RGRFLLVDTGGLWSGDKWEKKIQEK   72 (161)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET--------TEEEEEEECGGGCSSSSCCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC--------CceEEEEECCCCCCccchHHHHHHH
Confidence            368999999999999999999988754 4677777777666555433        2478999999987643222223444


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      +...++.+|++++|+|+++.....+ ..+.+++..     .+.|+++|+||+|+.+.++....+..+++
T Consensus        73 ~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  135 (161)
T 2dyk_A           73 VDRALEDAEVVLFAVDGRAELTQAD-YEVAEYLRR-----KGKPVILVATKVDDPKHELYLGPLYGLGF  135 (161)
T ss_dssp             HHHHTTTCSEEEEEEESSSCCCHHH-HHHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGGGGGSS
T ss_pred             HHHHHHhCCEEEEEEECCCcccHhH-HHHHHHHHh-----cCCCEEEEEECcccccchHhHHHHHhCCC
Confidence            5667899999999999987644333 334455554     35899999999999876544444444443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.69  E-value=3.3e-17  Score=168.87  Aligned_cols=133  Identities=24%  Similarity=0.299  Sum_probs=88.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc--ccCchhH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGR  349 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~--~~~gl~~  349 (421)
                      ++|+|||.||||||||+|+|++.+.+ +.++|++|.+...+.+...        +..+.+|||||+.....  ....+..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~~~~~   73 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--------GKTFKLVDTCGVFDNPQDIISQKMKE   73 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET--------TEEEEEEECTTTTSSGGGCCCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC--------CeEEEEEECCCccccccchHHHHHHH
Confidence            68999999999999999999998865 4899999999888877643        24789999999875321  1233455


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC-CCch-HHHHhCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM-YDDS-SSRQGIGF  419 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~-~e~~-~~l~~lGl  419 (421)
                      ....+++.||++++|+|++.+.+..+ ..+.++|+.     .++|+++|+||+|+... .... .++..+|+
T Consensus        74 ~~~~~~~~ad~il~V~D~~~~~~~~d-~~i~~~l~~-----~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~  139 (439)
T 1mky_A           74 VTLNMIREADLVLFVVDGKRGITKED-ESLADFLRK-----STVDTILVANKAENLREFEREVKPELYSLGF  139 (439)
T ss_dssp             HHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHH-----HTCCEEEEEESCCSHHHHHHHTHHHHGGGSS
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEeCCCCccccHHHHHHHHHhcCC
Confidence            56678899999999999987655544 335556665     36899999999998643 2222 44555555

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.69  E-value=6.8e-17  Score=159.09  Aligned_cols=125  Identities=27%  Similarity=0.322  Sum_probs=92.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~~  350 (421)
                      ..|+|||.||||||||+|+|++.+..+ ++.|.||.+...+.+...        ..++.++||||+.+..+. ++.+...
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--------~~~l~l~DTpG~~~~~~~l~~~~~~~   79 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--------RRQIVFVDTPGLHKPMDALGEFMDQE   79 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--------TEEEEEEECCCCCCCCSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--------CcEEEEecCccccchhhHHHHHHHHH
Confidence            369999999999999999999998765 778889987666655432        247999999998764221 1123344


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +..+++.+|++++|+|+++.....+ ..+++.+..+.   .+.|+++|+||+|+....+
T Consensus        80 ~~~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~  134 (301)
T 1wf3_A           80 VYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAKYPE  134 (301)
T ss_dssp             HHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCSSHH
T ss_pred             HHHHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc---CCCCEEEEEECcccCCchH
Confidence            5677899999999999987654443 33445565532   3689999999999986544

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.66  E-value=7.8e-17  Score=168.33  Aligned_cols=130  Identities=24%  Similarity=0.223  Sum_probs=75.6

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  346 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g  346 (421)
                      .++...+|+|+|.||||||||+|+|++.+.. +.++++||.+.....+...        +..+.+|||||+.+....-+.
T Consensus       229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--------g~~l~liDT~G~~~~~~~ve~  300 (476)
T 3gee_A          229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--------KTMFRLTDTAGLREAGEEIEH  300 (476)
T ss_dssp             HHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET--------TEEEEEEC-------------
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--------CeEEEEEECCCCCcchhHHHH
Confidence            3556678999999999999999999998654 5889999998877776654        247999999999764322111


Q ss_pred             h-hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          347 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       347 l-~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      + ....+.+++.||+++||+|++++...++...+.+.+....    ++|+++|+||+|+....+
T Consensus       301 ~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl~~~~~  360 (476)
T 3gee_A          301 EGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVANKLDRAANAD  360 (476)
T ss_dssp             -------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEEECTTSCTTTH
T ss_pred             HHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEEECcCCCCccc
Confidence            1 1234567889999999999998877665545555555542    689999999999986553

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.66  E-value=1.3e-16  Score=142.64  Aligned_cols=123  Identities=24%  Similarity=0.285  Sum_probs=88.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch-hHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-GRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl-~~~  350 (421)
                      .+|+|+|.+|||||||+|+|++.... +.++++||.+...+.+..+        +..+.++||||+.+....-+.. ...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~~   76 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--------GMPLHIIDTAGLREASDEVERIGIER   76 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--------TEEEEEEECCCCSCCSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC--------CeEEEEEECCCcccchhHHHHHHHHH
Confidence            48999999999999999999988754 5788888887766666543        2368999999986532111111 112


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+.+++.+|++++|+|+++..+.+.. .++.++.....  .+.|+++|+||+|+..
T Consensus        77 ~~~~~~~ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~~--~~~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           77 AWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLP--AKLPITVVRNKADITG  129 (172)
T ss_dssp             HHHHHHTCSEEEEEEETTTCCCCSHH-HHCHHHHHHSC--TTCCEEEEEECHHHHC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHHhcc--cCCCEEEEEECccCCc
Confidence            34567899999999999987665543 45555554332  3689999999999854

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.66  E-value=9e-17  Score=165.43  Aligned_cols=133  Identities=21%  Similarity=0.281  Sum_probs=80.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~  350 (421)
                      ++|+|||.||||||||+|+|++.+.+ +.++|++|.+...+.+...        +..+.+|||||+..... ....+...
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~~~~~   75 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL--------NYDFNLIDTGGIDIGDEPFLAQIRQQ   75 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC--------SSCCEEEC---------CHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC--------CceEEEEECCCCCCcchhHHHHHHHH
Confidence            68999999999999999999998765 4889999999888777654        24799999999864321 11223344


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      ...+++.||++|+|+|++++....+. .+.+.|+.     .++|+++|+||+|+....+...++..+|+
T Consensus        76 ~~~~~~~ad~il~vvD~~~~~~~~d~-~~~~~l~~-----~~~pvilv~NK~D~~~~~~~~~~~~~lg~  138 (436)
T 2hjg_A           76 AEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRANIYDFYSLGF  138 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHTT-----CCSCEEEEEECCCC-----CCCSSGGGSS
T ss_pred             HHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCccchhhHHHHHHcCC
Confidence            55678899999999999887665543 34455543     46899999999999765433333444554

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=141.90  Aligned_cols=124  Identities=17%  Similarity=0.116  Sum_probs=90.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +...+|+|+|.+|||||||+++|++........+.++.+.....+....      ....+.++||||..+..       .
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~-------~   80 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG------KTIKLQIWDTAGQERFR-------T   80 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETT------EEEEEEEEEECCSGGGC-------T
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC------EEEEEEEEECCCcHhhh-------h
Confidence            3457899999999999999999998776555555555555444444321      12468999999965431       1


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ....+++.+|++++|+|++++...+....++.++..+..  .+.|+++|+||+|+....
T Consensus        81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~  137 (196)
T 3tkl_A           81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKK  137 (196)
T ss_dssp             THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTC
T ss_pred             hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccccc
Confidence            234557889999999999987666666777777766543  368999999999997654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.65  E-value=2.9e-17  Score=157.99  Aligned_cols=119  Identities=25%  Similarity=0.378  Sum_probs=89.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc------ccCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH------LGKG  346 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~------~~~g  346 (421)
                      ++|+|+|.||||||||+|+|++....+.++|++|.+...+.+...        +..+.++||||+.+...      ..+.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--------~~~~~lvDtpG~~~~~~~~~~~~~~e~   73 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--------EHLIEITDLPGVYSLVANAEGISQDEQ   73 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--------TEEEEEEECCCCSSCC------CHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--------CeEEEEEeCCCcccccccccCCCHHHH
Confidence            589999999999999999999998778999999998888877654        24799999999976532      2222


Q ss_pred             hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +.+.|+.. +.+|++++|+|+++   .+....+..++..     .+.|+++|+||+|+....
T Consensus        74 i~~~~~~~-~~~d~vi~VvDas~---~~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~  126 (256)
T 3iby_A           74 IAAQSVID-LEYDCIINVIDACH---LERHLYLTSQLFE-----LGKPVVVALNMMDIAEHR  126 (256)
T ss_dssp             HHHHHHHH-SCCSEEEEEEEGGG---HHHHHHHHHHHTT-----SCSCEEEEEECHHHHHHT
T ss_pred             HHHHHHhh-CCCCEEEEEeeCCC---chhHHHHHHHHHH-----cCCCEEEEEEChhcCCcC
Confidence            34444322 78999999999986   2333334445543     468999999999986543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.64  E-value=4.5e-16  Score=145.14  Aligned_cols=127  Identities=21%  Similarity=0.371  Sum_probs=83.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc-h-hH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-L-GR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g-l-~~  349 (421)
                      ..+|+|+|.+|||||||+|+|++....+.+++++|.+.....+...        ...+.+|||||+.+....... + ..
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--------LNKYQIIDTPGLLDRAFENRNTIEMT  100 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--------TEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--------CCeEEEEECCCCcCcccchhhhHHHH
Confidence            3689999999999999999999887666778888887766655432        247899999999764332221 1 11


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChh--hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~--~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+......+|++++|+|+++....+  ....+...+...   ..+.|+++|+||+|+....+
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~~~~~  159 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV---FSNKSIVIGFNKIDKCNMDS  159 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC---C-CCCEEEEEECGGGCC--C
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh---hcCCcEEEEEeCcccCCchh
Confidence            2223357789999999999876543  222344444432   23689999999999986544

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.64  E-value=2.7e-16  Score=137.35  Aligned_cols=120  Identities=17%  Similarity=0.108  Sum_probs=81.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.+......+.++.+.....+....      ....+.++||||..+..    .+   ..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~~----~~---~~   70 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING------KKVKLQIWDTAGQERFR----TI---TT   70 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSS------CEEEEEEECCTTGGGTS----CC---CH
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEeCCCChhhh----hh---HH
Confidence            5899999999999999999998765443334333333333333221      12468999999975532    12   23


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|++++...+....+..++..+..  .+.|+++|+||+|+...
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~  123 (170)
T 1g16_A           71 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETR  123 (170)
T ss_dssp             HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTC
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcC
Confidence            456789999999999986666666666666665532  36899999999999543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.64  E-value=2.1e-16  Score=148.80  Aligned_cols=128  Identities=16%  Similarity=0.148  Sum_probs=81.4

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCC--CeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~p--fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      ...+|+|+|.+|||||||+|+|++.......++  ++|..+....+...        +..+.||||||+.+.......+.
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~i~liDTpG~~~~~~~~~~~~   99 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--------ETELVVVDTPGIFDTEVPNAETS   99 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--------TEEEEEEECCSCC-----CHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--------CceEEEEECCCccCCCCCHHHHH
Confidence            346899999999999999999999887666655  66776666555433        24799999999987654433333


Q ss_pred             HHHHH----hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          349 RNFLR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       349 ~~fL~----~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+.+    ..+.+|++|+|+|++.... .+...+...++.+... ..+|+++|+||+|+....
T Consensus       100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~  161 (239)
T 3lxx_A          100 KEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDT  161 (239)
T ss_dssp             HHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC---
T ss_pred             HHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcc
Confidence            34433    3456799999999975433 4444444444333211 236999999999987654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.63  E-value=1.8e-16  Score=145.96  Aligned_cols=125  Identities=23%  Similarity=0.220  Sum_probs=90.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC-C-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-----
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK-P-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-----  344 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~-~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-----  344 (421)
                      .++|+|+|.+|||||||+|+|++.+ . .+.+++++|.+.....+....       ...+.||||||+.+.....     
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA-------EPVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT-------SCSEEEEECCCCCSSCCCSTHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC-------CCcEEEEcCCCCCcccCChhhHHH
Confidence            4689999999999999999999986 2 457888888877665554211       2479999999986542111     


Q ss_pred             -CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          345 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       345 -~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                       ..+...+++....+|+++||+|+++.....+ ..+..++..     ..+|+++|+||+|+....+
T Consensus       102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~  161 (223)
T 4dhe_A          102 WEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-----TGKPIHSLLTKCDKLTRQE  161 (223)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-----GCCCEEEEEECGGGSCHHH
T ss_pred             HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-----cCCCEEEEEeccccCChhh
Confidence             1233455666667899999999987654333 345555554     4689999999999987544

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.63  E-value=4.8e-16  Score=141.71  Aligned_cols=124  Identities=17%  Similarity=0.117  Sum_probs=84.7

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      .....+|+|+|.+|||||||+++|++.+......+.++.+.....+....      ....+.+|||||..+...    + 
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~-   85 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING------KKVKLQLWDTAGQERFRT----I-   85 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETT------EEEEEEEECCTTGGGGTC----C-
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECC------EEEEEEEEeCCCcHHHHH----H-
Confidence            34457999999999999999999998765443444444333333333221      123689999999765321    1 


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        ...++..+|++++|+|++++...+....+..++..+..  ...|+++|+||+|+...
T Consensus        86 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~  140 (213)
T 3cph_A           86 --TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETR  140 (213)
T ss_dssp             --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSC
T ss_pred             --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccc
Confidence              23556889999999999986666666666666665532  36899999999999543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.63  E-value=4.8e-16  Score=157.09  Aligned_cols=125  Identities=26%  Similarity=0.355  Sum_probs=85.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh---
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG---  348 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~---  348 (421)
                      +..|+|+|++|||||||+|+|++....+.+++++|+++..+.+...        +..+.++||||++...  ...+.   
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~--------g~~v~l~DT~G~i~~l--p~~lve~f  248 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN--------NRKIMLVDTVGFIRGI--PPQIVDAF  248 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET--------TEEEEEEECCCBCSSC--CGGGHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC--------CEEEEEEeCCCchhcC--CHHHHHHH
Confidence            3449999999999999999999988767889999999988887754        2468999999987642  12222   


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCC--ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~--~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+.++..+|++++|+|++++.  ..+....+.+.|..+..  .++|+++|+||+|+....
T Consensus       249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~--~~~p~ilV~NK~Dl~~~~  308 (364)
T 2qtf_A          249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV--SGKPILVTLNKIDKINGD  308 (364)
T ss_dssp             HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC--CSCCEEEEEECGGGCCSC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc--CCCCEEEEEECCCCCCch
Confidence            23466788999999999998764  34444555566665532  468999999999997643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.63  E-value=3.6e-16  Score=137.94  Aligned_cols=122  Identities=16%  Similarity=0.071  Sum_probs=86.0

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+++|.+|||||||+++|++........+.++.+.....+....      ....+.++||||..+...    +   
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~---   74 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING------EKVKLQIWDTAGQERFRT----I---   74 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETT------EEEEEEEEEETTGGGCSS----C---
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECC------EEEEEEEEcCCCchhhhh----h---
Confidence            446899999999999999999998776555556666555444444321      124689999999655321    1   


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...++..+|++++|+|++++...+....+..++....   ...|+++|+||+|+.+..
T Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~  129 (181)
T 3tw8_B           75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERK  129 (181)
T ss_dssp             CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGC
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhc
Confidence            2345788999999999998666666555666665543   468999999999987643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.63  E-value=1.3e-15  Score=136.22  Aligned_cols=122  Identities=17%  Similarity=0.102  Sum_probs=79.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC-------------------------------
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL-------------------------------  320 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~-------------------------------  320 (421)
                      ..+|+|+|.+|||||||+++|++........+.+..+.....+......                               
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY   86 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence            3689999999999999999999876432222211122222222221100                               


Q ss_pred             CccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655          321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN  400 (421)
Q Consensus       321 ~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlN  400 (421)
                      ........+.+|||||..+..       .....+++.+|++++|+|++++.+.+....+..++..+.    ..|+++|+|
T Consensus        87 ~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~N  155 (208)
T 3clv_A           87 NENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVAN  155 (208)
T ss_dssp             CTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEEE
T ss_pred             cCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEEE
Confidence            000001478999999975532       123455788999999999998766666666666666543    389999999


Q ss_pred             CCCC
Q 014655          401 KIDL  404 (421)
Q Consensus       401 K~Dl  404 (421)
                      |+|+
T Consensus       156 K~D~  159 (208)
T 3clv_A          156 KIDK  159 (208)
T ss_dssp             CTTC
T ss_pred             CCCc
Confidence            9994

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.63  E-value=1.2e-15  Score=134.70  Aligned_cols=124  Identities=19%  Similarity=0.144  Sum_probs=82.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++........+.++.+.....+....      ....+.+|||||..+.       ....
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~   73 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG------HFVTMQIWDTAGQERF-------RSLR   73 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETT------EEEEEEEEECCCCGGG-------HHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECC------EEEEEEEEeCCCchhh-------hhhH
Confidence            36899999999999999999998764433333333332222332221      1237899999996543       2223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...++.+|++++|+|++++...+....+..++..+..  ...+.|+++|+||+|+...+
T Consensus        74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~  132 (177)
T 1wms_A           74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ  132 (177)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS
T ss_pred             HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc
Confidence            4557889999999999987666666666666654321  12468999999999997443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.62  E-value=3.3e-16  Score=162.08  Aligned_cols=134  Identities=21%  Similarity=0.264  Sum_probs=81.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~  349 (421)
                      .++|+|||.||||||||+|+|++.+.. +.++|++|.+...+.+...        +..+.+|||||+...... .+.+..
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~~~~   94 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL--------NYDFNLIDTGGIDIGDEPFLAQIRQ   94 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC--------SSCCEEECCCC------CCHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC--------CceEEEEECCCCCCcchHHHHHHHH
Confidence            468999999999999999999998765 4789999999888777644        347999999998743211 223344


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      ....+++.||++|+|+|+.......+. .+.++|+.     .++|+++|+||+|+.+..+...++..+|+
T Consensus        95 ~~~~~~~~ad~il~VvD~~~~~~~~d~-~l~~~l~~-----~~~pvilV~NK~D~~~~~~~~~e~~~lg~  158 (456)
T 4dcu_A           95 QAEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRANIYDFYSLGF  158 (456)
T ss_dssp             HHHHHHHHCSEEEEEEESSSCSCHHHH-HHHHHHTT-----CCSCEEEEEECC---------CCSGGGSS
T ss_pred             HHHhhHhhCCEEEEEEeCCCCCChHHH-HHHHHHHH-----cCCCEEEEEECccchhhhhhHHHHHHcCC
Confidence            455677899999999998876554443 35555554     57999999999999765544444445554

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.62  E-value=1.1e-15  Score=135.90  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=84.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++... ...++.|+.+.....+..+.      ....+.++||||..+..    .+..   
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~----~~~~---   70 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDG------ETCLLDILDTAGQEEYS----AMRD---   70 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETT------EEEEEEEEECCCC---C----TTHH---
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECC------cEEEEEEEECCCcHHHH----HHHH---
Confidence            5899999999999999999997663 34555555444333333221      12357889999976532    2222   


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~  411 (421)
                      ..+..+|++++|+|++++...+....+..++..+.. ..+.|+++|+||+|+.......
T Consensus        71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~  128 (189)
T 4dsu_A           71 QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVDT  128 (189)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCSSCH
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccccCH
Confidence            345679999999999987666666666666665432 2468999999999998654433

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.62  E-value=1.1e-15  Score=137.58  Aligned_cols=121  Identities=17%  Similarity=0.195  Sum_probs=80.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|++......++.. |.......+...        ...+.+|||||+.+..       ....
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~-------~~~~   81 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKG--------RVAFTVFDMGGAKKFR-------GLWE   81 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEET--------TEEEEEEEECCSGGGG-------GGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeC--------CEEEEEEECCCCHhHH-------HHHH
Confidence            58999999999999999999987754422222 222222233221        3479999999986542       1223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhc------CCCCCCCCEEEEEeCCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY------NPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~------~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+++.+|++|+|+|++++.+++....++..+...      .+.....|+++|+||+|+....+
T Consensus        82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~  144 (199)
T 4bas_A           82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT  144 (199)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC
T ss_pred             HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC
Confidence            4578899999999999876666655444444331      11112689999999999987644

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.61  E-value=1.9e-15  Score=133.38  Aligned_cols=115  Identities=24%  Similarity=0.273  Sum_probs=82.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++.+.....++.+|.+.....+...        +..+.+|||||..+....       .
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~-------~   72 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN--------DKKITFLDTPGHEAFTTM-------R   72 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET--------TEEEEESCCCSSSSSSCS-------C
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC--------CceEEEEECCCCHHHHHH-------H
Confidence            4689999999999999999999887665556666655444444332        246899999997654221       1


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++..+|++++|+|+++....+.++.+. .+..     .+.|+++|+||+|+...
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~l~-~~~~-----~~~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           73 ARGAQVTDIVILVVAADDGVMPQTVEAIN-HAKA-----ANVPIIVAINKMDKPEA  122 (178)
T ss_dssp             CSSCCCCCEEEEEEETTCCCCHHHHHHHH-HHGG-----GSCCEEEEEETTTSSCS
T ss_pred             HHHHhhCCEEEEEEECCCCCcHHHHHHHH-HHHh-----CCCCEEEEEECccCCcC
Confidence            24568899999999998766555554332 2322     36899999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.61  E-value=1.9e-16  Score=153.47  Aligned_cols=119  Identities=27%  Similarity=0.428  Sum_probs=88.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~  350 (421)
                      .+|+|+|.+|||||||+|+|++....++++|++|.+...+.+...        +..+.++||||+.+....  ...+...
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~--------~~~~~liDtpG~~~~~~~~~~~~~~e~   75 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT--------DHQVTLVDLPGTYSLTTISSQTSLDEQ   75 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS--------SCEEEEEECCCCSCSCC----CCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC--------CCceEEEECcCCCccccccccCCHHHH
Confidence            589999999999999999999998777899999999888887754        247899999998775321  1122222


Q ss_pred             HHH---hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLR---HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~---~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +.+   ..+.+|++++|+|+++   .+....+..++...     +.|+++|+||+|+.+.
T Consensus        76 i~~~~~~~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~  127 (274)
T 3i8s_A           76 IACHYILSGDADLLINVVDASN---LERNLYLTLQLLEL-----GIPCIVALNMLDIAEK  127 (274)
T ss_dssp             HHHHHHHHTCCSEEEEEEEGGG---HHHHHHHHHHHHHH-----TCCEEEEEECHHHHHH
T ss_pred             HHHHHHhhcCCCEEEEEecCCC---hHHHHHHHHHHHhc-----CCCEEEEEECccchhh
Confidence            222   2378999999999986   23333444555542     6899999999998654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.61  E-value=2e-15  Score=131.81  Aligned_cols=119  Identities=19%  Similarity=0.136  Sum_probs=83.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|+++|.+|||||||+++|.+.....  .+...++.......+..        ....+.++||||+.+..       ..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dt~G~~~~~-------~~   71 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN--------ELHKFLIWDTAGLERFR-------AL   71 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT--------EEEEEEEEEECCSGGGG-------GG
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC--------eEEEEEEEcCCCchhhh-------cc
Confidence            589999999999999999999876422  33334343332222221        12478999999985431       12


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+++.+|++++|+|++++.+.+....+..++..+..  ...|+++|+||+|+.+..
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~  127 (170)
T 1z0j_A           72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVR  127 (170)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGC
T ss_pred             cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccccc
Confidence            33557889999999999987666666667777776532  468899999999997643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.61  E-value=1.9e-15  Score=135.16  Aligned_cols=121  Identities=26%  Similarity=0.348  Sum_probs=85.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc------c
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------G  344 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~------~  344 (421)
                      .++|+++|.+|||||||+|+|++.... ..+.+++|........           ..++.++||||+......      -
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~i~Dt~G~~~~~~~~~~~~~~   91 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV-----------NSKYYFVDLPGYGYAKVSKKERMLW   91 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-----------TTTEEEEECCCBSSSCCCHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE-----------CCcEEEEECCCCccccCChhhHHHH
Confidence            468999999999999999999998743 3666777765544333           236899999997543211      1


Q ss_pred             CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..+...+++....+|++++|+|++........ .+..++..     .+.|+++|+||+|+.+..+
T Consensus        92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~  150 (195)
T 3pqc_A           92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS-----LNIPFTIVLTKMDKVKMSE  150 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCGGG
T ss_pred             HHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEEChhcCChHH
Confidence            12334455566677999999999876544443 45556665     3689999999999986544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.61  E-value=1.6e-15  Score=134.10  Aligned_cols=122  Identities=17%  Similarity=0.143  Sum_probs=81.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCC-CCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY-PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~-pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ..+|+++|.+|||||||+++|++.......+ +.++.+.....+....      ....+.+|||||..+.       ...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~~-------~~~   76 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG------VKVKLQMWDTAGQERF-------RSV   76 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETT------EEEEEEEEECCCC-------------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECC------EEEEEEEEeCCCcHHH-------HHH
Confidence            3689999999999999999999877543232 3222332222222211      1236899999996543       122


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+++.+|++++|+|++++...+....+..++..+..  .+.|+++|+||+|+....
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~  132 (180)
T 2g6b_A           77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHER  132 (180)
T ss_dssp             --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCC
T ss_pred             HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCccc
Confidence            34557889999999999987666666666666666543  468999999999998643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.61  E-value=1.4e-15  Score=136.21  Aligned_cols=121  Identities=19%  Similarity=0.127  Sum_probs=81.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|++........+..+.+.....+....      ....+.+|||||..+..    .+   ..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~----~~---~~   82 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG------NKAKLAIWDTAGQERFR----TL---TP   82 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT------EEEEEEEEEECSSGGGC----CS---HH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECC------eEEEEEEEeCCCchhhh----hh---hH
Confidence            5899999999999999999998764432222222222222222211      12478999999975532    12   34


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|++++........+..++..+.. ....|+++|+||+|+...
T Consensus        83 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~  136 (195)
T 1x3s_A           83 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR  136 (195)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc
Confidence            557889999999999876655565555556554321 246899999999999653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.61  E-value=9.9e-16  Score=136.45  Aligned_cols=122  Identities=16%  Similarity=0.041  Sum_probs=87.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+++|.+|||||||+++|++........+.++.+.....+....      ....+.+|||||..+.       ...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~   75 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG------KYVKLQIWDTAGQERF-------RSV   75 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETT------EEEEEEEEEECCSGGG-------HHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC------EEEEEEEEeCCCcHHH-------HHH
Confidence            346899999999999999999998775544445444444333333221      1237899999996543       233


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +..+++.+|++++|+|++++...+....+..++..+..  .+.|+++|+||+|+...
T Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~  130 (186)
T 2bme_A           76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDAD  130 (186)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred             HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc
Confidence            45668899999999999987666666666666665533  46899999999999653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.61  E-value=2.2e-15  Score=136.69  Aligned_cols=124  Identities=21%  Similarity=0.151  Sum_probs=84.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|++........+..+.+.....+....      ....+.+|||||..+...    +   .
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~---~   74 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD------RLVTMQIWDTAGQERFQS----L---G   74 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS------CEEEEEEEEECSSGGGSC----S---C
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC------EEEEEEEEeCCCcHHHHH----h---H
Confidence            46899999999999999999998775443334333444333333321      124789999999755422    1   1


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...++.+|++|+|+|++++...+....+..++..+..  ...+.|+++|+||+|+....
T Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  133 (207)
T 1vg8_A           75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ  133 (207)
T ss_dssp             CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC
T ss_pred             HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc
Confidence            2446789999999999987666666666665554321  11368999999999998543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.61  E-value=2e-15  Score=133.67  Aligned_cols=121  Identities=17%  Similarity=0.040  Sum_probs=81.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.+......+..+.+.....+....      ....+.+|||||..+..       ....
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~-------~~~~   79 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND------ATVKFEIWDTAGQERYH-------SLAP   79 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT------EEEEEEEEECCCSGGGG-------GGTH
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC------EEEEEEEEeCCCChhhh-------hhhH
Confidence            5899999999999999999998764432222222111111221111      12478999999975431       1233


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|++++...+....+..++..+..  ...|+++|+||+|+.+..
T Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~  133 (181)
T 2efe_B           80 MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDAR  133 (181)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTC
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccc
Confidence            557889999999999876666666666666665532  368999999999997654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.61  E-value=1.7e-15  Score=132.00  Aligned_cols=120  Identities=17%  Similarity=0.068  Sum_probs=81.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|.+........+..+.+.....+....      ....+.++||||..+.       .....
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~G~~~~-------~~~~~   70 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE------HTVKFEIWDTAGQERF-------ASLAP   70 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT------EEEEEEEEEECCSGGG-------GGGHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCChhh-------hhhhh
Confidence            4799999999999999999998764332223222222222222211      1247899999997543       12234


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.+|++++|+|++++...++...+..++.....  .+.|+++|+||+|+...
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQE  123 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGS
T ss_pred             hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc
Confidence            557889999999999987666666666666655432  46899999999999754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.60  E-value=4.1e-15  Score=129.54  Aligned_cols=117  Identities=23%  Similarity=0.274  Sum_probs=79.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|||||||+++|++.+.. ...|  |.......+...        ...+.+|||||..+.       ......
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~~~~   63 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK--------NISFTVWDVGGQDKI-------RPLWRH   63 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECS--------SCEEEEEECCCCGGG-------HHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEEC--------CEEEEEEEcCCChhh-------HHHHHH
Confidence            7999999999999999999876532 1122  333333333332        247999999998543       223345


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +++.+|++++|+|++++.+.+....++..+... ....+.|+++|+||+|+.....
T Consensus        64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~  118 (164)
T 1r8s_A           64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN  118 (164)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc-hhhcCCeEEEEEECcCCcCCCC
Confidence            678999999999999776555544444433321 1124689999999999977543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.60  E-value=1.8e-15  Score=133.23  Aligned_cols=120  Identities=19%  Similarity=0.108  Sum_probs=82.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ..+|+++|.+|||||||+++|++..... .++.|+ .+.....+....      ....+.++||||..+.       ...
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~   80 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSG------QKIKLQIWDTAGQERF-------RAV   80 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETT------EEEEEEEEECTTGGGT-------CHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECC------eEEEEEEEECCCChHh-------hhh
Confidence            4689999999999999999999876432 222222 111111222110      1246899999996543       223


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...+++.+|++++|+|+++....+....+..++..+..  .+.|+++|+||+|+.+.
T Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~  135 (179)
T 1z0f_A           81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQ  135 (179)
T ss_dssp             HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG
T ss_pred             HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc
Confidence            44567889999999999987666666667776766542  46899999999999654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.60  E-value=1.5e-15  Score=136.54  Aligned_cols=121  Identities=20%  Similarity=0.270  Sum_probs=78.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC--CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc------
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------  343 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~------  343 (421)
                      ..+|+++|.+|||||||+|+|++.+  ....+.+++|.......+           +.++.+|||||+.+....      
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~l~Dt~G~~~~~~~~~~~~~   91 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-----------NDELHFVDVPGYGFAKVSKSEREA   91 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-----------TTTEEEEECCCBCCCSSCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-----------CCcEEEEECCCCCccccCHHHHHH
Confidence            4689999999999999999999876  234666777765544333           236899999997543211      


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      -..+...+++....+|++++|+|+++.....+.. +..++..     .+.|+++|+||+|+....+
T Consensus        92 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~i~v~nK~Dl~~~~~  151 (195)
T 1svi_A           92 WGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-----YGIPVIVIATKADKIPKGK  151 (195)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGSCGGG
T ss_pred             HHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCChHH
Confidence            0122334444445569999999999876655543 4455554     4689999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.60  E-value=2.6e-15  Score=136.31  Aligned_cols=122  Identities=14%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|++........+..+.+.....+....      ....+.+|||||+.+.       ....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~   74 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND------KRIKLQIWDTAGLERY-------RTIT   74 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGG-------HHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECC------eEEEEEEEECCCchhh-------cchH
Confidence            46899999999999999999998764332222111111111222110      1247899999997543       2334


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.+|++++|+|++++...+....+..++..+..  ...|+++|+||+|+....
T Consensus        75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~  129 (203)
T 1zbd_A           75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDER  129 (203)
T ss_dssp             HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSC
T ss_pred             HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCccc
Confidence            5667899999999999987666666666677766542  468999999999997643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.60  E-value=6.5e-16  Score=150.08  Aligned_cols=116  Identities=24%  Similarity=0.434  Sum_probs=87.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc--ccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~--~~~gl~~~  350 (421)
                      .+|+|+|.||||||||+|+|++....+.++|++|.+...+.+..         ...+.+|||||+.+...  ..+.+.+.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~---------~~~l~l~DtpG~~~~~~~~~~e~v~~~   74 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK---------NKDLEIQDLPGIYSMSPYSPEAKVARD   74 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT---------CTTEEEEECCCCSCSSCSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec---------CCeEEEEECCCcCccCCCChHHHHHHH
Confidence            58999999999999999999998878899999999888877753         14799999999875421  12234444


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ++.. +.+|++++|+|+++.   +....+..++..     .+.|+++|+||+|+..
T Consensus        75 ~~~~-~~~d~vi~V~D~t~~---e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~  121 (272)
T 3b1v_A           75 YLLS-QRADSILNVVDATNL---ERNLYLTTQLIE-----TGIPVTIALNMIDVLD  121 (272)
T ss_dssp             HHHT-TCCSEEEEEEEGGGH---HHHHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred             HHhc-CCCCEEEEEecCCch---HhHHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence            5433 579999999999862   333344445544     4689999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.60  E-value=2.1e-15  Score=133.36  Aligned_cols=117  Identities=26%  Similarity=0.446  Sum_probs=80.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~  350 (421)
                      .+|+++|.+|||||||+++|++....+..+|++|.+...+.+...        +..+.++||||+.+....  .+.+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~l~i~Dt~G~~~~~~~~~~~~~~~~   75 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--------GEKFKVVDLPGVYSLTANSIDEIIARD   75 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--------TEEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--------CcEEEEEECCCcccCCCcchhHHHHHH
Confidence            579999999999999999999887666778888887777766543        247899999998764211  1123333


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      +++. ..+|++++|+|+++.   +....+..++..     .+.|+++|+||+|+..
T Consensus        76 ~~~~-~~~~~~i~v~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~  122 (165)
T 2wji_A           76 YIIN-EKPDLVVNIVDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAK  122 (165)
T ss_dssp             HHHH-HCCSEEEEEEETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHH
T ss_pred             HHhc-CCCCEEEEEecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhcc
Confidence            3332 479999999999752   233334455544     3689999999999854

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.60  E-value=1.6e-15  Score=132.35  Aligned_cols=122  Identities=16%  Similarity=0.148  Sum_probs=79.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++........+ |........+...      .....+.++||||..+.       .....
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~------~~~~~~~~~Dt~G~~~~-------~~~~~   69 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP-TVEDTYRQVISCD------KSICTLQITDTTGSHQF-------PAMQR   69 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC-CSCEEEEEEEEET------TEEEEEEEEECCSCSSC-------HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-CccccEEEEEEEC------CEEEEEEEEECCCchhh-------HHHHH
Confidence            5899999999999999999998654321111 1111111111111      01236899999997543       12234


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+..+|++++|+|++++...+....++.++..+.....+.|+++|+||+|+.+..
T Consensus        70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~  125 (172)
T 2erx_A           70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR  125 (172)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred             HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc
Confidence            45677999999999997666666666666666654333468999999999997543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.60  E-value=9.6e-16  Score=134.94  Aligned_cols=121  Identities=16%  Similarity=0.091  Sum_probs=83.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++........+.++.+.....+....      ....+.++||||..+..       ..+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~~~-------~~~~   81 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED------RTVRLQLWDTAGQERFR-------SLIP   81 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGGG-------GGSH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECC------eEEEEEEEECCCcHHHH-------HHHH
Confidence            5899999999999999999998765444444444444333333221      12368999999975432       1233


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .++..+|++++|+|++++...+....+..++.....  .+.|+++|+||+|+.+..
T Consensus        82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~  135 (179)
T 2y8e_A           82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKR  135 (179)
T ss_dssp             HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGC
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccC
Confidence            456789999999999876655666556665554322  368999999999997543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.60  E-value=9e-16  Score=138.99  Aligned_cols=122  Identities=15%  Similarity=0.096  Sum_probs=82.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|++........+..+.+.....+....      ....+.+|||||..+.       ....
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~-------~~~~   92 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG------KKIRLQIWDTAGQERF-------NSIT   92 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETT------EEEEEEEEEECCSGGG-------HHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECC------eEEEEEEEeCCCcHHH-------HHHH
Confidence            46899999999999999999998764433333333333333333221      1236899999996543       2234


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...++.+|++++|+|+++....++...+..++..+..  .+.|+++|+||+|+....
T Consensus        93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~~~  147 (192)
T 2il1_A           93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDR  147 (192)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGC
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccccc
Confidence            4567889999999999987666776667777766543  468999999999997543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.60  E-value=1.7e-15  Score=132.22  Aligned_cols=120  Identities=22%  Similarity=0.173  Sum_probs=72.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+++|.+|||||||+++|++..... .+.+++|..... .+..        ....+.++||||..+..    .+   .
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~i~D~~g~~~~~----~~---~   66 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDG--------EEASLMVYDIWEQDGGR----WL---P   66 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETT--------EEEEEEEEECC----------------
T ss_pred             EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECC--------EEEEEEEEECCCCccch----hh---h
Confidence            589999999999999999999876543 455556654322 2221        13478999999976531    11   2


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..+++.+|++++|+|++++.+.+....++.++..+. ...+.|+++|+||+|+.+..+
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~  123 (166)
T 3q72_A           67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSRE  123 (166)
T ss_dssp             ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCC
T ss_pred             hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccc
Confidence            234678999999999998766666666666666542 124689999999999986543

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.60  E-value=4.5e-16  Score=158.92  Aligned_cols=118  Identities=33%  Similarity=0.618  Sum_probs=71.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC---------CccccccceEEecCCccc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLI  338 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~---------~~~~~~~~i~iiDtPGli  338 (421)
                      .++...+|+|||.||||||||+|+|++.+..++++||||++|+.+.+......         +.......+.++||||+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence            34555789999999999999999999998877999999999999988754210         000012359999999999


Q ss_pred             ccccccCchhHHHHHhcccCCEEEEEeeCCCC----------CChhhHHHHHHHHHh
Q 014655          339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRM  385 (421)
Q Consensus       339 e~a~~~~gl~~~fL~~i~radvIl~VvD~s~~----------~~~~~~~~l~~eL~~  385 (421)
                      ++++.+++++..|+.+++.||++++|+|+++.          +|..+++.+..+|..
T Consensus        98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l  154 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQL  154 (396)
T ss_dssp             ---------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhh
Confidence            99988889999999999999999999999752          567777777777654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.60  E-value=1.6e-15  Score=138.13  Aligned_cols=123  Identities=17%  Similarity=0.129  Sum_probs=86.5

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+|+|.+|||||||+++|++........+..+.+.....+..+.      ....+.+|||||..+...    +   
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~---   73 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDG------KTVKLQIWDTAGQERFRT----I---   73 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETT------EEEEEEEECCTTTTTTTC----C---
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC------EEEEEEEEeCCChHHHHH----H---
Confidence            346899999999999999999998775443344444333333333221      123689999999755321    1   


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+++.+|++++|+|++++...+....+..++..+..  ...|+++|+||+|+....
T Consensus        74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~  129 (206)
T 2bcg_Y           74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKR  129 (206)
T ss_dssp             CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTC
T ss_pred             HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc
Confidence            23457889999999999987666666666677766542  368999999999997643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.60  E-value=1e-15  Score=133.39  Aligned_cols=119  Identities=17%  Similarity=0.078  Sum_probs=80.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++........+..+.+.....+....      ....+.++||||..+..    .+   ..
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~----~~---~~   72 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND------EDVRLMLWDTAGQEEFD----AI---TK   72 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT------EEEEEEEECCTTGGGTT----CC---CH
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECC------EEEEEEEEcCCCcHhHH----HH---HH
Confidence            5899999999999999999998754332222222222222222211      12478999999976532    12   23


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.+|++++|+|++++.+.+....+..++..+.   .+.|+++|+||+|+.+.
T Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~  124 (168)
T 1z2a_A           73 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDD  124 (168)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGG
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcc
Confidence            45678999999999998665666666666665543   36899999999999764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.59  E-value=3e-15  Score=131.06  Aligned_cols=121  Identities=17%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +...+|+++|.+|||||||+++|.+.....  + ..|.......+...        ...+.++||||..+..       .
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~-~~t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~~-------~   66 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT--T-IPTIGFNVETVTYK--------NLKFQVWDLGGLTSIR-------P   66 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC--C-CCCSSEEEEEEEET--------TEEEEEEEECCCGGGG-------G
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC--c-CCcCccceEEEEEC--------CEEEEEEECCCChhhh-------H
Confidence            344689999999999999999998765321  1 11222222223322        2478999999975432       1


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+..+++.+|++++|+|++++...+....++..+... ....+.|+++|+||+|+....+
T Consensus        67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~  125 (171)
T 1upt_A           67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMT  125 (171)
T ss_dssp             GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc-hhhCCCEEEEEEECCCCcCCCC
Confidence            2335578899999999999877666555444443321 1124689999999999987643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.59  E-value=4.2e-15  Score=130.59  Aligned_cols=122  Identities=19%  Similarity=0.110  Sum_probs=75.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+++|.+|||||||+++|++..... .+.+.+|.......+..        ....+.++||||.....  ...+   .
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~g~~~~~--~~~~---~   71 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDG--------EDTTLVVVDTWEAEKLD--KSWS---Q   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETT--------EEEEEEEECCC---------CHH---H
T ss_pred             EEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECC--------EEEEEEEEecCCCCccc--hhhh---H
Confidence            589999999999999999999876433 23333333222222221        12368999999975420  0111   1


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+..+|++++|+|++++.+.+....++.++..+.. ..+.|+++|+||+|+.+..
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~  127 (175)
T 2nzj_A           72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCR  127 (175)
T ss_dssp             HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTC
T ss_pred             HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhcccc
Confidence            2345779999999999987666666666666665421 2368999999999997654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.59  E-value=3.6e-15  Score=134.32  Aligned_cols=122  Identities=24%  Similarity=0.285  Sum_probs=81.4

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +...+|+|+|.+|||||||+++|++.+......  .|.......+...        ...+.+|||||..+..       .
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~-------~   82 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKG--------NVTIKLWDIGGQPRFR-------S   82 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEET--------TEEEEEEEECCSHHHH-------T
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeC--------CEEEEEEECCCCHhHH-------H
Confidence            344689999999999999999999876432111  2222222233222        2479999999976431       1


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+...++.+|++++|+|+++....+....++..+... ....+.|+++|+||+|+....+
T Consensus        83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~  141 (188)
T 1zd9_A           83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALD  141 (188)
T ss_dssp             THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCC
T ss_pred             HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCCC
Confidence            2345568899999999999866655554444444321 1124689999999999987543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.59  E-value=2.3e-15  Score=134.52  Aligned_cols=120  Identities=22%  Similarity=0.257  Sum_probs=81.3

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+++|.+|||||||+++|++.+  ...+.. |.......+...        ...+.++||||..+..       ..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~~-------~~   78 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISP-TLGFNIKTLEHR--------GFKLNIWDVGGQKSLR-------SY   78 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC-CSSEEEEEEEET--------TEEEEEEEECCSHHHH-------TT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc-cCccceEEEEEC--------CEEEEEEECCCCHhHH-------HH
Confidence            34689999999999999999999876  322222 222222233322        2479999999985431       12


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...+++.+|++++|+|++++.+.+....++.++.... ...+.|+++|+||+|+....+
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~  136 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPGALS  136 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hcCCCcEEEEEeCccCCCCCC
Confidence            2345788999999999998766665554544443321 124689999999999987544

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.59  E-value=1.9e-15  Score=131.19  Aligned_cols=120  Identities=19%  Similarity=0.147  Sum_probs=80.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|.+... ...++.|+.......+....      ....+.++||||..+.       .....
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~-------~~~~~   70 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG------EEVQIDILDTAGQEDY-------AAIRD   70 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETT------EEEEEEEEECCC---C-------HHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECC------EEEEEEEEECCCcchh-------HHHHH
Confidence            5899999999999999999998763 33444444433333222221      1236899999997543       22234


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..+|++++|+|++++...+....+..++..+.. ..+.|+++|+||+|+.+.
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  124 (168)
T 1u8z_A           71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK  124 (168)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGG
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECcccccc
Confidence            456789999999999976655555555555554432 236899999999999754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.59  E-value=1.6e-15  Score=156.14  Aligned_cols=125  Identities=20%  Similarity=0.236  Sum_probs=86.8

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh-
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-  348 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~-  348 (421)
                      ...+|+++|.||||||||+|+|++.+.. +.++++||.+.....+..+        +..+.+|||||+.+.......+. 
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~e~  245 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN--------QQEFVIVDTAGMRKKGKVYETTEK  245 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEET--------TEEEEETTHHHHTCBTTBCCCCSH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC--------CeEEEEEECCCcCcCccccchHHH
Confidence            3469999999999999999999998765 5889999998877666543        24699999999976543222221 


Q ss_pred             ---HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          349 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       349 ---~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                         ...+.++++||++++|+|++++.+.++.. +...+..     .++|+++|+||+|+.+..+
T Consensus       246 ~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl~~~~~  303 (436)
T 2hjg_A          246 YSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-----AGKAVVIVVNKWDAVDKDE  303 (436)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSCCCT
T ss_pred             HHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH-----cCCcEEEEEECccCCCcch
Confidence               12346788999999999999887777654 4444443     4689999999999987544

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.59  E-value=2.4e-15  Score=135.33  Aligned_cols=120  Identities=18%  Similarity=0.225  Sum_probs=82.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++....+..+. +|.......+...        +..+.+|||||..+..       ..+
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~-------~~~   84 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSS--------SLSFTVFDMSGQGRYR-------NLW   84 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECS--------SCEEEEEEECCSTTTG-------GGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEEC--------CEEEEEEECCCCHHHH-------HHH
Confidence            46899999999999999999998763333332 3333334444433        2479999999975431       223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCC--CCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY--LERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l--~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.+|++++|+|++++...+....++.++.... ..  .+.|+++|+||+|+....
T Consensus        85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~  142 (190)
T 2h57_A           85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAV  142 (190)
T ss_dssp             GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCC
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCC
Confidence            355788999999999987655555544444444321 11  468999999999997653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.59  E-value=2.5e-15  Score=130.88  Aligned_cols=118  Identities=17%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|+++|.+|||||||+++|++.....  .+...++.......+..        ....+.++||||..+.       ...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~G~~~~-------~~~   71 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD--------TTVKFEIWDTAGQERY-------HSL   71 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT--------EEEEEEEEEECCSGGG-------GGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC--------EEEEEEEEeCCCcHHh-------hhh
Confidence            589999999999999999999765432  12222222222222211        1247899999997543       222


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...+++.+|++++|+|++++.+.+....+..++..+..  ...|+++|+||+|+...
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~  126 (170)
T 1r2q_A           72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANK  126 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred             hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccc
Confidence            34567889999999999976666666666666665432  36889999999999654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=4e-15  Score=134.51  Aligned_cols=119  Identities=18%  Similarity=0.124  Sum_probs=84.8

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCC--ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~--ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      ...+|+|+|.+|||||||+++|++....  ..+..++|.......+..        ....+.+|||||..+..       
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~Dt~G~~~~~-------   86 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN--------ELHKFLIWDTAGQERFH-------   86 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS--------SEEEEEEEEECCSGGGG-------
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC--------EEEEEEEEcCCCchhhH-------
Confidence            3468999999999999999999987632  234444443332222221        12479999999975431       


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ......++.+|++++|+|++++...+....+..++..+..  ...|+++|+||+|+.+
T Consensus        87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~  142 (192)
T 2fg5_A           87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSD  142 (192)
T ss_dssp             GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence            1233557889999999999987766777777777766542  4689999999999975

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.59  E-value=2.7e-15  Score=132.36  Aligned_cols=124  Identities=17%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++........+.++.+.....+....     .....+.++||||..+.       ....
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~-------~~~~   75 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG-----DKVATMQVWDTAGQERF-------QSLG   75 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS-----SCCEEEEEECCC----------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcC-----CcEEEEEEEECCCChHh-------hhhh
Confidence            46899999999999999999998764332233333333333333321     01247899999996543       1223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...++.+|++++|+|++++...+....+..++..+..  .....|+++|+||+|+...
T Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  133 (182)
T 1ky3_A           76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  133 (182)
T ss_dssp             -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence            3557889999999999987666666666665554321  1246899999999999644

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.58  E-value=6.2e-15  Score=131.24  Aligned_cols=128  Identities=16%  Similarity=0.055  Sum_probs=83.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc-ceeecCCCCCC---ccccccceEEecCCcccccccccCch
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLG---AEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~---~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      ..+|+|+|.+|||||||+++|++........+..+.+.. ...+.......   .......+.++||||+.+.       
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------   83 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF-------   83 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-------
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-------
Confidence            468999999999999999999986643222222111111 11222211000   0000247999999997543       


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...+..+++.+|++++|+|++++...+....+..++..+.. ..+.|+++|+||+|+.+.
T Consensus        84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  142 (195)
T 3bc1_A           84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQ  142 (195)
T ss_dssp             HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGG
T ss_pred             HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence            33456678899999999999987666666666666665432 136899999999999764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.58  E-value=1.1e-15  Score=138.43  Aligned_cols=122  Identities=20%  Similarity=0.134  Sum_probs=80.0

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      .....+|+++|.+|||||||+++|++.. ....++.|+.+.....+..+.      ....+.+|||||..+...    +.
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~~   85 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDG------RPVRLQLCDTAGQDEFDK----LR   85 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETT------EEEEEEEEECCCSTTCSS----SG
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECC------EEEEEEEEECCCCHHHHH----Hh
Confidence            3455799999999999999999999876 334555555443333332221      123678999999865422    22


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                         ..++..+|++++|+|++++.+.+... .|..++..+.   .+.|+++|+||+|+...
T Consensus        86 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           86 ---PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLRED  139 (201)
T ss_dssp             ---GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGC
T ss_pred             ---HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhc
Confidence               23568899999999999876666654 4666666654   36899999999999753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.58  E-value=4e-15  Score=129.48  Aligned_cols=121  Identities=18%  Similarity=0.161  Sum_probs=81.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.... ..+..|+.......+....      ....+.++||||..+..    .+.   .
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~~----~~~---~   69 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDC------QQCMLEILDTAGTEQFT----AMR---D   69 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSS------CEEEEEEEEECSSCSST----THH---H
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECC------EEEEEEEEECCChHHHH----HHH---H
Confidence            48999999999999999999986532 2333333322222222221      12468999999976532    222   3


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|++++.+.+....+.+++..+.. ..+.|+++|+||+|+.+..
T Consensus        70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~  124 (167)
T 1c1y_A           70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDER  124 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGC
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccc
Confidence            446679999999999986655666556655554321 2468999999999997643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.58  E-value=2.5e-15  Score=135.50  Aligned_cols=121  Identities=17%  Similarity=0.077  Sum_probs=82.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|++.+......+..+.+.....+..+.      ....+.++||||..+..    .+   .
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~----~~---~   87 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG------KQIKLQIWDTAGQESFR----SI---T   87 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETT------EEEEEEEECCTTGGGTS----CC---C
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC------EEEEEEEEECCCchhhh----hh---H
Confidence            46899999999999999999998765443333333222222222221      12478999999976532    12   2


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...++.+|++++|+|+++....+....+..++..+..  .+.|+++|+||+|+...
T Consensus        88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~  141 (191)
T 2a5j_A           88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESR  141 (191)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCc
Confidence            3456789999999999987666666667777766432  46899999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.58  E-value=4.2e-15  Score=133.60  Aligned_cols=124  Identities=19%  Similarity=0.081  Sum_probs=82.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|++........+..+.+.....+....      ....+.+|||||..+..   ..   ..
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~---~~---~~   87 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG------ERIKIQLWDTAGQERFR---KS---MV   87 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT------EEEEEEEEECCCSHHHH---TT---TH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECC------EEEEEEEEECCCchhhh---hh---hh
Confidence            46899999999999999999998764332223222222222222211      12478999999975431   01   23


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...++.+|++++|+|+++..+.+....+..++..+.. ..+.|+++|+||+|+....
T Consensus        88 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~  143 (189)
T 1z06_A           88 QHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAI  143 (189)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGC
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc
Confidence            3456789999999999986666666666666655431 2468999999999997543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.58  E-value=3.1e-15  Score=133.77  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=79.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++.+...  + ..|.......+...        +..+.++||||..+...       .+
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~~-------~~   82 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMNEVVH--T-SPTIGSNVEEIVIN--------NTRFLMWDIGGQESLRS-------SW   82 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTTSCEE--E-ECCSSSSCEEEEET--------TEEEEEEEESSSGGGTC-------GG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCc--c-CCcCceeeEEEEEC--------CEEEEEEECCCCHhHHH-------HH
Confidence            3689999999999999999999876411  0 11111111222221        24799999999865321       22


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.+|++++|+|+++....+....++..+.... ...+.|+++|+||+|+....
T Consensus        83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~  138 (181)
T 2h17_A           83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECM  138 (181)
T ss_dssp             GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccCC
Confidence            355788999999999998777666555554444321 12468999999999997653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.58  E-value=1.1e-15  Score=133.58  Aligned_cols=120  Identities=20%  Similarity=0.065  Sum_probs=78.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++........+..+.+.....+..+.      ....+.+|||||..+...       ...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~~-------~~~   73 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG------KRVNLAIWDTAGQERFHA-------LGP   73 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSS------CEEEEEEEECCCC--------------C
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECC------EEEEEEEEECCCcHhhhh-------hHH
Confidence            5899999999999999999998764332333322222222333221      123689999999654321       122


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.+|++++|+|++++.+.+....+..++..+..  ...|+++|+||+|+.+.
T Consensus        74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~  126 (170)
T 1z08_A           74 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKE  126 (170)
T ss_dssp             CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGG
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc
Confidence            346789999999999886655665556555554321  35899999999999764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.58  E-value=8.5e-16  Score=147.80  Aligned_cols=117  Identities=26%  Similarity=0.380  Sum_probs=88.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~  350 (421)
                      .+|+|+|.||||||||+|+|++....+.++|++|.+...+.+...        ...+.++||||+.+....  .+.+.+.
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~e~v~~~   77 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--------GYTINLIDLPGTYSLGYSSIDEKIARD   77 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--------TEEEEEEECCCCSSCCSSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--------CeEEEEEECCCcCccCCCCHHHHHHHH
Confidence            589999999999999999999988778899999988887777643        247999999998754321  1223444


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      |+.. +.+|++++|+|+++..  . ...+..++..     .+.|+++|+||+|+..
T Consensus        78 ~~~~-~~~d~ii~V~D~t~~~--~-~~~~~~~l~~-----~~~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           78 YLLK-GDADLVILVADSVNPE--Q-SLYLLLEILE-----MEKKVILAMTAIDEAK  124 (258)
T ss_dssp             HHHH-SCCSEEEEEEETTSCH--H-HHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred             HHhh-cCCCEEEEEeCCCchh--h-HHHHHHHHHh-----cCCCEEEEEECcCCCC
Confidence            5433 6899999999998632  2 2234445544     3689999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.58  E-value=4.1e-15  Score=130.19  Aligned_cols=123  Identities=23%  Similarity=0.144  Sum_probs=76.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++........+.+|.+.....+..+.      ....+.++||||..+...   .+... 
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~D~~g~~~~~~---~~~~~-   71 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDK------EEVTLIVYDIWEQGDAGG---WLQDH-   71 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETT------EEEEEEEECCCCC-----------CH-
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECC------eEEEEEEEECCCccccch---hhhhh-
Confidence            35899999999999999999987665443334444444333333221      124688999999865321   11222 


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        .++.+|++++|+|++++.+.+....++.++..... ..+.|+++|+||+|+.+.
T Consensus        72 --~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~  124 (169)
T 3q85_A           72 --CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARS  124 (169)
T ss_dssp             --HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGG
T ss_pred             --hhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhc
Confidence              24568999999999987666666666666665432 136899999999999754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.58  E-value=3.8e-15  Score=133.66  Aligned_cols=119  Identities=19%  Similarity=0.203  Sum_probs=79.1

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+++|.+|||||||+++|++.+..  .+ ..|.......+...        +..+.+|||||..+..    .+   
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~----~~---   76 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HT-SPTIGSNVEEIVIN--------NTRFLMWDIGGQESLR----SS---   76 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE--EE-ECCSCSSCEEEEET--------TEEEEEEECCC----C----GG---
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC--cC-cCCCccceEEEEEC--------CEEEEEEECCCCHhHH----HH---
Confidence            3468999999999999999999976532  11 11222222223222        2479999999986532    12   


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +..+++.+|++++|+|++++.+.+....++.++.... ...+.|+++|+||+|+....
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~  133 (187)
T 1zj6_A           77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECM  133 (187)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCC
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCC
Confidence            2345688999999999998877776666555554421 12468999999999998653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.58  E-value=3.8e-15  Score=134.04  Aligned_cols=122  Identities=15%  Similarity=0.112  Sum_probs=79.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++........+ |........+..+      .....+.+|||||..+.       .....
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~------~~~~~~~l~Dt~G~~~~-------~~~~~   74 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVISCD------KSVCTLQITDTTGSHQF-------PAMQR   74 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEEEET------TEEEEEEEEECCGGGSC-------HHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEEEEC------CEEEEEEEEeCCChHHh-------HHHHH
Confidence            5899999999999999999998654321111 1111111111111      11246899999997543       12233


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+..+|++++|+|++++...+....++..+..+.....+.|+++|+||+|+....
T Consensus        75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~  130 (199)
T 2gf0_A           75 LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE  130 (199)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS
T ss_pred             HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc
Confidence            45678999999999998666666565666665543323468999999999997643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.58  E-value=2.5e-15  Score=135.06  Aligned_cols=123  Identities=15%  Similarity=0.111  Sum_probs=83.1

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+|+|.+|||||||+++|++........+..+.+.....+....      ....+.+|||||..+...    +   
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~---   87 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD------KRIKLQIWDTAGQERYRT----I---   87 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETT------EEEEEEEEECCSCCSSCC----S---
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECC------eEEEEEEEeCCCcHHHhh----h---
Confidence            457999999999999999999998764332222111111111221110      124789999999754321    2   


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ....++.+|++++|+|++++...+....+..++..+.  ..+.|+++|+||+|+....
T Consensus        88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~  143 (189)
T 2gf9_A           88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDER  143 (189)
T ss_dssp             GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGC
T ss_pred             HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccccccc
Confidence            2345788999999999988766666666777776653  2468999999999997643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.58  E-value=5e-15  Score=128.32  Aligned_cols=121  Identities=18%  Similarity=0.151  Sum_probs=80.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++..... .+..|+.+.....+....      ....+.++||||..+.       .....
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~-------~~~~~   69 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDS------SPSVLEILDTAGTEQF-------ASMRD   69 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTCC-------HHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECC------EEEEEEEEECCCchhh-------HHHHH
Confidence            589999999999999999999765332 333333222222222211      1235899999996543       22233


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|++++...+....+..++..+.. ..+.|+++|+||+|+....
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~  124 (167)
T 1kao_A           70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESER  124 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGC
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccc
Confidence            456789999999999976655555555555554321 2468999999999987543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.58  E-value=5.2e-15  Score=131.42  Aligned_cols=121  Identities=16%  Similarity=0.102  Sum_probs=81.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|++.. ....++.|+.......+..+.      ....+.+|||||..+...    +.   .
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~~---~   72 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNG------QEYHLQLVDTAGQDEYSI----FP---Q   72 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETT------EEEEEEEEECCCCCTTCC----CC---G
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECC------EEEEEEEEeCCCchhhhH----HH---H
Confidence            589999999999999999999665 234454554433333333221      124679999999765421    22   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|++++.+.+....+..++..+.. ..+.|+++|+||+|+....
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~  127 (181)
T 3t5g_A           73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMER  127 (181)
T ss_dssp             GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTC
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcc
Confidence            346789999999999987666666666666644321 2468999999999997544

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.58  E-value=4.3e-15  Score=142.43  Aligned_cols=128  Identities=15%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ..+|+++|.+|||||||+|+|++.+. .+.+++++|.......+...        +..+.||||||+.+.........+.
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~l~liDTpG~~~~~~~~~~~~~~  107 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--------GFTINIIDTPGLVEAGYVNHQALEL  107 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--------TEEEEEEECCCSEETTEECHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--------CeeEEEEECCCCCCcccchHHHHHH
Confidence            36899999999999999999999876 45778888887766665543        2479999999998764433222222


Q ss_pred             HHHhc--ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i--~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+.+  ..+|+++||+|+......+....+.+++.........+|+++|+||+|+...
T Consensus       108 i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          108 IKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             HHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence            22222  2789999999887644333323455555543222223589999999999643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.57  E-value=5.2e-15  Score=133.86  Aligned_cols=122  Identities=19%  Similarity=0.144  Sum_probs=85.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|++... ...++.|+.+.....+..+.      ....+.+|||||..+.       ....
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~   79 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG------EEVQIDILDTAGQEDY-------AAIR   79 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTCC-------HHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECC------EEEEEEEEcCCChhhh-------HHHH
Confidence            36899999999999999999998763 34555555544333333221      1236899999997543       2223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+..+|++++|+|+++....+....+..++..+.. ....|+++|+||+|+....
T Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~  135 (206)
T 2bov_A           80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKR  135 (206)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGC
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccc
Confidence            3456789999999999986666666666666655432 2368999999999997643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.57  E-value=3.2e-15  Score=132.45  Aligned_cols=120  Identities=19%  Similarity=0.147  Sum_probs=83.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|++... ...++.|+.......+....      ....+.++||||..+.       .....
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~~   84 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG------EEVQIDILDTAGQEDY-------AAIRD   84 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTCC-------HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECC------EEEEEEEEECCCCccc-------HHHHH
Confidence            5899999999999999999998763 34455555443333332221      1236899999997543       22334


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.+|++++|+|+++....+....+..++..+.. ..+.|+++|+||+|+.+.
T Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  138 (187)
T 2a9k_A           85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK  138 (187)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGG
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence            556789999999999976655565555555555432 236899999999999764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.57  E-value=1.8e-14  Score=128.82  Aligned_cols=126  Identities=24%  Similarity=0.248  Sum_probs=81.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCC--------CCeeeeccceeecCCCCCCccccccceEEecCCcccccccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY--------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~--------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~  343 (421)
                      ..+|+|+|.+|||||||++.|.+........        ..+|...........   ........+.+|||||..+.   
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~~~~i~Dt~G~~~~---   87 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG---EVKGFKTRFHLYTVPGQVFY---   87 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCC---CSSSCEEEEEEEECCSCCSC---
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccc---cccCCceEEEEEeCCChHHH---
Confidence            3689999999999999999998765433111        112221111111110   00111347999999997543   


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCCCC---hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAENP---VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~---~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                          ......+++.+|++++|+|++++..   .+.++.+..++..+.....+.|+++|+||+|+...
T Consensus        88 ----~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A           88 ----NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             ----SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred             ----HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence                2223356789999999999985422   23445566666666545567999999999999765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.57  E-value=3e-15  Score=136.92  Aligned_cols=124  Identities=15%  Similarity=0.073  Sum_probs=82.3

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      .....+|+|+|.+|||||||+++|++........+..+.+.....+....      ....+.+|||||..+.       .
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~   92 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQG------KRVKLQIWDTAGQERF-------R   92 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETT------EEEEEEEECCTTCGGG-------H
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECC------EEEEEEEEECCCcHhH-------H
Confidence            34557999999999999999999998764322212111222222222211      1247899999997543       2


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ......++.+|++++|+|++++...+....+..++..+..  .+.|+++|+||+|+...
T Consensus        93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~  149 (201)
T 2hup_A           93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSEL  149 (201)
T ss_dssp             HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG
T ss_pred             HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccc
Confidence            2344567889999999999987666666667777766542  46899999999999753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.57  E-value=8.7e-16  Score=159.87  Aligned_cols=125  Identities=30%  Similarity=0.384  Sum_probs=82.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  346 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g  346 (421)
                      .++...+|+|+|.||||||||+|+|++.+.. +.++++||.+.....+..+        +..+.+|||||+.+....-+.
T Consensus       220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--------g~~v~liDT~G~~~~~~~ve~  291 (462)
T 3geh_A          220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--------GIPVQVLDTAGIRETSDQVEK  291 (462)
T ss_dssp             HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--------TEEEEECC-------------
T ss_pred             hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--------CEEEEEEECCccccchhHHHH
Confidence            3556678999999999999999999987654 5788999988776665543        247899999999764322121


Q ss_pred             h-hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          347 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       347 l-~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      + ....+..++.+|++++|+|++++....+ ..++..+.       .+|+++|+||+|+....
T Consensus       292 ~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-------~~piivV~NK~Dl~~~~  346 (462)
T 3geh_A          292 IGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-------HRPLILVMNKIDLVEKQ  346 (462)
T ss_dssp             -------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-------TSCEEEEEECTTSSCGG
T ss_pred             HHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-------CCcEEEEEECCCCCcch
Confidence            1 1234567788999999999998665444 33444432       37999999999997643

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.57  E-value=6.1e-15  Score=127.42  Aligned_cols=121  Identities=17%  Similarity=0.117  Sum_probs=80.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|.+.... ..+..|+.+.....+....      ....+.++||||..+..    .   ...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~G~~~~~----~---~~~   69 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDG------ETCLLDILDTAGQEEYS----A---MRD   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETT------EEEEEEEEECCCCSSCC----H---HHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECC------EEEEEEEEECCCchhhh----H---HHH
Confidence            47999999999999999999976532 2333333222222222111      12368999999975431    1   223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|+++....+....+..++..+.. ..+.|+++|+||+|+....
T Consensus        70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~  124 (166)
T 2ce2_X           70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAART  124 (166)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC
T ss_pred             HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcc
Confidence            456789999999999876555555666666655432 1368999999999998643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.57  E-value=3e-15  Score=137.71  Aligned_cols=123  Identities=17%  Similarity=0.108  Sum_probs=86.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ....+|+|+|.+|||||||+++|++........+..+.+.....+..+.      ....+.+|||||..+.       ..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~-------~~   90 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING------EKVKLQIWDTAGQERF-------RS   90 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGG-------HH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCcHHH-------HH
Confidence            3457999999999999999999998765433333333333333333221      1236899999996442       22


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .....++.+|++++|+|++++.+.+....+..++..+..  ...|+++|+||+|+...
T Consensus        91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~  146 (201)
T 2ew1_A           91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAER  146 (201)
T ss_dssp             HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccc
Confidence            344567889999999999987666666667777766542  46899999999999754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.57  E-value=1.9e-15  Score=134.06  Aligned_cols=118  Identities=20%  Similarity=0.140  Sum_probs=80.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++... ...+..|+.+.....+...      .....+.+|||||..+..    .+   ..
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~~----~~---~~   71 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD------GKPVNLGLWDTAGQEDYD----RL---RP   71 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEET------TEEEEEEEECCCCSGGGT----TT---GG
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEEC------CEEEEEEEEECCCCHhHH----HH---HH
Confidence            5899999999999999999997653 2333333332222222211      112467899999986542    11   12


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|++++.+.++.. .+..++..+.   .+.|+++|+||+|+...
T Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD  124 (186)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTC
T ss_pred             HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC---CCCCEEEEeEccccccc
Confidence            3568899999999998766565554 4666666654   26899999999999765

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.57  E-value=7.3e-16  Score=137.20  Aligned_cols=122  Identities=13%  Similarity=0.079  Sum_probs=63.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++........+.++.+.....+..+.      ....+.+|||||..+...       ..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~-------~~   74 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG------KRIKLQIWDTAGQERFRT-------IT   74 (183)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETT------EEEEEEEEEC----------------C
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECC------EEEEEEEEcCCCChhhhh-------hH
Confidence            46899999999999999999997654332233333333322332221      124789999999754321       12


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...++.+|++++|+|++++.+.+....+..++..+..  .+.|+++|+||+|+.+..
T Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~  129 (183)
T 2fu5_C           75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKR  129 (183)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCC
T ss_pred             HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccC
Confidence            2446789999999999986666666666666665432  368999999999997643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.57  E-value=1e-15  Score=150.48  Aligned_cols=118  Identities=27%  Similarity=0.364  Sum_probs=84.5

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccc-cccc-ccCchhHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAH-LGKGLGRN  350 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGli-e~a~-~~~gl~~~  350 (421)
                      .|+|||.||||||||+|+|++.+..+ ++.+.||.+...+.+...        ..++.++||||+. +... .+..+...
T Consensus        10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--------~~~i~~iDTpG~~~~~~~~l~~~~~~~   81 (301)
T 1ega_A           10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--------AYQAIYVDTPGLHMEEKRAINRLMNKA   81 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--------TEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--------CeeEEEEECcCCCccchhhHHHHHHHH
Confidence            69999999999999999999987654 677888887777766533        2479999999986 3211 00011112


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ....++.+|++++|+|+++ ....+ +.+.+.+..     .+.|+++|+||+|+..
T Consensus        82 ~~~~l~~~D~vl~Vvd~~~-~~~~~-~~i~~~l~~-----~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           82 ASSSIGDVELVIFVVEGTR-WTPDD-EMVLNKLRE-----GKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             TTSCCCCEEEEEEEEETTC-CCHHH-HHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred             HHHHHhcCCEEEEEEeCCC-CCHHH-HHHHHHHHh-----cCCCEEEEEECcccCc
Confidence            2355688999999999976 33333 344555543     4689999999999986

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.57  E-value=3.3e-15  Score=134.52  Aligned_cols=121  Identities=20%  Similarity=0.088  Sum_probs=81.7

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCC--CeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~p--fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      ....+|+|+|.+|||||||+++|++........+  ..+.......+..        ....+.+|||||+.+..    . 
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------~~~~~~i~Dt~G~~~~~----~-   89 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT--------AAVKAQIWDTAGLERYR----A-   89 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT--------EEEEEEEEEESCCCTTC----T-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC--------EEEEEEEEeCCCchhhh----h-
Confidence            4457999999999999999999998765432211  1111111111111        12478999999985431    1 


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        .....++.+|++++|+|++++...+....++.++..+.  ....|+++|+||+|+...
T Consensus        90 --~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~  145 (193)
T 2oil_A           90 --ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQA  145 (193)
T ss_dssp             --THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGG
T ss_pred             --hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccc
Confidence              23455788999999999987665555555666665533  246899999999999764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.57  E-value=6.6e-15  Score=131.96  Aligned_cols=120  Identities=19%  Similarity=0.175  Sum_probs=78.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++... ...+..|+.+.....+....      ....+.+|||||..+..       ....
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~-------~~~~   87 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDG------ETCLLDILDTAGQEEYS-------AMRD   87 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETT------EEEEEEEEECCC----------------
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECC------EEEEEEEEECCChHHHH-------HHHH
Confidence            5899999999999999999997653 23444444333322232221      12358999999975431       1223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.+|++++|+|+++....++...+..++..+.. ..+.|+++|+||+|+...
T Consensus        88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~  141 (190)
T 3con_A           88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTR  141 (190)
T ss_dssp             --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC
T ss_pred             HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcc
Confidence            457889999999999886666666666666665432 136899999999999764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.56  E-value=1.1e-14  Score=130.83  Aligned_cols=115  Identities=23%  Similarity=0.280  Sum_probs=77.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce----eecCCCCCCccccccceEEecCCcccccccccCch
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g----~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      ..+|+++|.+|||||||+++|++....       ...|..+    .+...        ...+.++||||....       
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~-------~~~~t~g~~~~~~~~~--------~~~l~i~Dt~G~~~~-------   73 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASEDIS-------HITPTQGFNIKSVQSQ--------GFKLNVWDIGGQRKI-------   73 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSCCE-------EEEEETTEEEEEEEET--------TEEEEEEECSSCGGG-------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCC-------cccCcCCeEEEEEEEC--------CEEEEEEECCCCHHH-------
Confidence            368999999999999999999986432       1222222    22221        247899999997542       


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...+..+++.+|++++|+|++++...+....++.++... ....+.|+++|+||+|+.....
T Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~  134 (181)
T 1fzq_A           74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE-EKLSCVPVLIFANKQDLLTAAP  134 (181)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTC-GGGTTCCEEEEEECTTSTTCCC
T ss_pred             HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcCcccCCC
Confidence            233456678999999999998766555444333333211 1124689999999999987644

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=1.9e-15  Score=136.31  Aligned_cols=122  Identities=15%  Similarity=0.077  Sum_probs=84.4

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCcc--CCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia--~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      ....+|+|+|.+|||||||+++|++......  +...++.......+...        ...+.+|||||..+.       
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------   85 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK--------RVKLQIWDTAGQERY-------   85 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT--------TEEEEEECHHHHHHC-------
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE--------EEEEEEEeCCChHHH-------
Confidence            4557999999999999999999998663221  11111111111111111        246999999996543       


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .......++.+|++++|+|++++...+....+..++..+..  .+.|+++|+||+|+....
T Consensus        86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~  144 (191)
T 3dz8_A           86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEER  144 (191)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC
T ss_pred             HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc
Confidence            22344567889999999999987777777777777776542  468999999999996543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.56  E-value=7e-16  Score=136.23  Aligned_cols=123  Identities=16%  Similarity=0.152  Sum_probs=80.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++........+.++.+.....+....     .....+.+|||||..+..    .+   ..
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~~~~~~~Dt~G~~~~~----~~---~~   74 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG-----NLNVTLQIWDIGGQTIGG----KM---LD   74 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETT-----TEEEEEEEEECTTCCTTC----TT---HH
T ss_pred             EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCC-----CCEEEEEEEECCCCcccc----ch---hh
Confidence            5899999999999999999998653221111111222222222211     012479999999975431    22   33


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|++++.+.++...+..++..+.......| +++|+||+|+.+.
T Consensus        75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~  130 (178)
T 2hxs_A           75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM  130 (178)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence            457889999999999987666666666666665422112456 7999999999753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=6.5e-15  Score=132.67  Aligned_cols=118  Identities=18%  Similarity=0.147  Sum_probs=82.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++... ...+..|+.+.....+....      ....+.+|||||..+..    .+   ..
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~D~~G~~~~~----~~---~~   84 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGG------KQYLLGLYDTAGQEDYD----RL---RP   84 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSS------CEEEEEEECCCCSSSST----TT---GG
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECC------EEEEEEEEECCCCcchh----HH---HH
Confidence            5899999999999999999998742 23444454333322333221      12468999999976542    12   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|++++.+.+... .+..++..+.   .+.|+++|+||+|+...
T Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTC
T ss_pred             HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccc
Confidence            4578899999999998866555554 4666666653   36899999999999764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.56  E-value=4.3e-15  Score=130.97  Aligned_cols=120  Identities=19%  Similarity=0.177  Sum_probs=81.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++... ..+++.|+.......+..+.      ....+.++||||..+.    ..+..   
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~~----~~~~~---   75 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDG------IPARLDILDTAGQEEF----GAMRE---   75 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTTT----SCCHH---
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECC------EEEEEEEEECCCchhh----HHHHH---
Confidence            5899999999999999999998742 34555555443333333221      1246899999997653    22333   


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHH-HhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL-~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.+|++++|+|+++....+....+..++ ....  ..+.|+++|+||+|+....
T Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~  130 (181)
T 2fn4_A           76 QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQR  130 (181)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGC
T ss_pred             HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccc
Confidence            3456799999999999766555555555554 3322  2468999999999997643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.56  E-value=1.6e-15  Score=135.55  Aligned_cols=117  Identities=26%  Similarity=0.459  Sum_probs=85.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~  350 (421)
                      .+|+|+|.+|||||||+++|++....+..+|++|.+...+.+...        +..+.+|||||+.+....  .+.+...
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~~~   79 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--------GEKFKVVDLPGVYSLTANSIDEIIARD   79 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--------TEEEEEEECCCCSCCSSSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--------CcEEEEEECCCcCccccccHHHHHHHH
Confidence            589999999999999999999877666788888888777776543        247899999998764211  1123333


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ++.. ..+|++++|+|+++   .+....+..++..     .+.|+++|+||+|+..
T Consensus        80 ~~~~-~~~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~  126 (188)
T 2wjg_A           80 YIIN-EKPDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAK  126 (188)
T ss_dssp             HHHH-HCCSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred             HHhc-cCCCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccc
Confidence            3322 45899999999874   3344445555544     4689999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.56  E-value=6.6e-15  Score=134.31  Aligned_cols=124  Identities=23%  Similarity=0.162  Sum_probs=85.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|||.+|||||||+++|++........+.++.+.....+..+.      ....+.+|||||.....   ..+..  
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~~---~~~~~--   91 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDK------EEVTLVVYDIWEQGDAG---GWLRD--   91 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETT------EEEEEEEECCCCCSGGG---HHHHH--
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECC------EEEEEEEEecCCCccch---hhhHH--
Confidence            36899999999999999999987654444555555444333333221      12468899999975421   01222  


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                       ..++.+|++++|+|++++.+.+.+..++.++..+.. ....|+++|+||+|+....
T Consensus        92 -~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~  146 (195)
T 3cbq_A           92 -HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSR  146 (195)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTC
T ss_pred             -HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccC
Confidence             335679999999999987666666667666665432 1368999999999997643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.56  E-value=4.8e-15  Score=134.72  Aligned_cols=121  Identities=17%  Similarity=0.079  Sum_probs=78.0

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +...+|+|+|.+|||||||+++|++........+....+.....+..+.      ....+.+|||||..+.       ..
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~   92 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDG------ERTVLQLWDTAGQERF-------RS   92 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETT------EEEEEEEEECTTCTTC-------HH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECC------EEEEEEEEECCCCcch-------hh
Confidence            3457999999999999999999998763221111111111111222111      1246899999996543       23


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      .....++.+|++++|+|++++...+....+.+++..+..  .+.|+++|+||+|+.
T Consensus        93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~  146 (199)
T 2p5s_A           93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIR  146 (199)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccc
Confidence            345567889999999999987666666667777766532  368999999999986

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.56  E-value=7e-15  Score=152.17  Aligned_cols=124  Identities=19%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC----
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK----  345 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~----  345 (421)
                      ...+|+++|.+|+|||||+|+|++.+. .+.++++||.+.....+...        +..+.+|||||+.+......    
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~e~  265 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN--------QQEFVIVDTAGMRKKGKVYETTEK  265 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEET--------TEEEEETTGGGTTTBTTBCCCCSH
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC--------CceEEEEECCCCCcCcccchHHHH
Confidence            457899999999999999999998764 35889999998877776643        24799999999876543211    


Q ss_pred             chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ......+.++++||++|+|+|+++.....+ ..+..++..     .++|+++|+||+|+.+..
T Consensus       266 ~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~  322 (456)
T 4dcu_A          266 YSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-----AGKAVVIVVNKWDAVDKD  322 (456)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-----TTCEEEEEEECGGGSCCC
T ss_pred             HHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-----cCCCEEEEEEChhcCCCc
Confidence            122234567899999999999998665444 345555554     468999999999998654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.55  E-value=1.3e-14  Score=131.52  Aligned_cols=116  Identities=27%  Similarity=0.359  Sum_probs=81.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.+..  .+ .+|..+....+..+        +..+.++||||..+..    .+   +.
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~----~~---~~   85 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIG--------NIKFTTFDLGGHIQAR----RL---WK   85 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEET--------TEEEEEEECCCSGGGT----TS---GG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEEC--------CEEEEEEECCCCHHHH----HH---HH
Confidence            58999999999999999999987643  22 23444444444433        2478999999986542    12   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.+|++++|+|++++.+.+....+..++.... ...+.|+++|+||+|+...
T Consensus        86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~  139 (190)
T 1m2o_B           86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNA  139 (190)
T ss_dssp             GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTC
T ss_pred             HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCC
Confidence            44678999999999998766665555555443321 1246899999999999863

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.55  E-value=8.4e-16  Score=139.73  Aligned_cols=123  Identities=17%  Similarity=0.138  Sum_probs=82.4

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ....+|+|+|.+|||||||+++|++........+.++.+.....+....      ....+.+|||||..+...    +  
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~--   98 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG------KTIKLQIWDTAGQERFRT----I--   98 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETT------EEEEEEEECCTTCTTCCC----C--
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECC------EEEEEEEEECCCcHhHHH----H--
Confidence            3457999999999999999999998765444344444444444443321      123689999999655422    1  


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                       ...+++.+|++++|+|+++....+....++.++..+..  .+.|+++|+||+|+...
T Consensus        99 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~  153 (199)
T 3l0i_B           99 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK  153 (199)
T ss_dssp             -SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--
T ss_pred             -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCcc
Confidence             12346789999999999987766676667777765432  36899999999999754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.55  E-value=5.3e-15  Score=134.61  Aligned_cols=124  Identities=17%  Similarity=0.082  Sum_probs=82.3

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +...+|+|+|.+|||||||+++|++.... ..+..|+.......+....      ....+.+|||||..+...    +  
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~--   88 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGK------DEFHLHLVDTAGQDEYSI----L--   88 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----------CEEEEEEEECCCCTTCC----C--
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECC------EEEEEEEEECCCccchHH----H--
Confidence            34579999999999999999999987644 3344444333333333221      124689999999765421    1  


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                       ....++.+|++++|+|+++....+....+..++..+. ...+.|+++|+||+|+....
T Consensus        89 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~  145 (201)
T 3oes_A           89 -PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH-GKTRVPVVLVGNKADLSPER  145 (201)
T ss_dssp             -CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGC
T ss_pred             -HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCcccc
Confidence             2245678999999999998666666666666665432 12368999999999997543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.55  E-value=3.5e-15  Score=136.77  Aligned_cols=121  Identities=21%  Similarity=0.166  Sum_probs=84.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++... ...+..|+.+.....+..+.      ....+.++||||..+..       ...
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~-------~~~   95 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGLEDYD-------RLR   95 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-------CEEEEEEEEECCSGGGT-------TTG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECC------EEEEEEEEECCCchhhH-------HHH
Confidence            46899999999999999999997643 33445555444333333321      12357799999985532       112


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...++.+|++++|+|++++.+.++.. .+..++..+.   .+.|+++|+||+|+....+
T Consensus        96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~  151 (204)
T 4gzl_A           96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKD  151 (204)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHH
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchh
Confidence            34578899999999999876666654 5666776654   4689999999999976543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.55  E-value=1.2e-14  Score=139.77  Aligned_cols=129  Identities=17%  Similarity=0.101  Sum_probs=84.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ..+|+++|.+|+|||||+|+|++.... +.+++.+|..+....+...        ...+.||||||+.+...........
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~l~iiDTpG~~~~~~~~~~~~~~  110 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--------GFTLNIIDTPGLIEGGYINDMALNI  110 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--------TEEEEEEECCCSEETTEECHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--------CeEEEEEECCCCCCCccchHHHHHH
Confidence            468999999999999999999988753 4677777766555444332        2479999999997754332222222


Q ss_pred             HHHh--cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~--i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +.++  ...+|+++||+|++..........+..++.........+|+++|+||+|+.+.+
T Consensus       111 i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          111 IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            2222  247999999988865332222234555554431111226999999999997654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.55  E-value=9.4e-15  Score=129.96  Aligned_cols=121  Identities=20%  Similarity=0.156  Sum_probs=80.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|++... ...+..|+.......+..+.      ....+.+|||||..+.    ..+.   .
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~----~~~~---~   84 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHTEIDN------QWAILDVLDTAGQEEF----SAMR---E   84 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETT------EEEEEEEEECCSCGGG----CSSH---H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEEEeCC------cEEEEEEEECCCchhh----HHHH---H
Confidence            5899999999999999999997643 23343343332222222221      1235778999997553    2222   3


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.+|++++|+|++++.+.+....+..++..+. ...+.|+++|+||+|+.+..
T Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~  139 (183)
T 3kkq_A           85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK-DRESFPMILVANKVDLMHLR  139 (183)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TSSCCCEEEEEECTTCSTTC
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECCCchhcc
Confidence            44677999999999998766666666666554432 12468999999999997643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.55  E-value=3.7e-15  Score=132.34  Aligned_cols=119  Identities=18%  Similarity=0.183  Sum_probs=75.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++.+..  .+. .|.......+...        ...+.++||||..+...       .+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~-~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~~-------~~   79 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQIGEVV--TTK-PTIGFNVETLSYK--------NLKLNVWDLGGQTSIRP-------YW   79 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSEEE--EEC-SSTTCCEEEEEET--------TEEEEEEEEC----CCT-------TG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCcC--ccC-CcCccceEEEEEC--------CEEEEEEECCCCHhHHH-------HH
Confidence            468999999999999999999875531  111 1111111222221        24789999999865321       12


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..+++.+|++++|+|++++...+....++..+.... ...+.|+++|+||+|+.+...
T Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~  136 (183)
T 1moz_A           80 RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALS  136 (183)
T ss_dssp             GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCC
Confidence            345688999999999998766665554444443221 135789999999999976543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.55  E-value=1.8e-15  Score=138.01  Aligned_cols=123  Identities=15%  Similarity=0.054  Sum_probs=79.6

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ....+|+|+|.+|||||||+++|++........+..+.+.....+....      ....+.++||||..+..    .+  
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~~----~~--   90 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG------KTVKLQIWDTAGQERFR----SV--   90 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETT------EEEEEEEECCTTHHHHS----CC--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECC------eeeEEEEEcCCCcHhHH----HH--
Confidence            4457999999999999999999998765443333333333223332221      12478999999975432    11  


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                       +...++.+|++++|+|++++...+....++.++..+..  .+.|+++|+||+|+...
T Consensus        91 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~  145 (200)
T 2o52_A           91 -TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPE  145 (200)
T ss_dssp             -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGG
T ss_pred             -HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc
Confidence             23456789999999999987666666666666665432  46899999999999653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.55  E-value=5.5e-15  Score=145.38  Aligned_cols=125  Identities=18%  Similarity=0.124  Sum_probs=90.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+|+|.+|||||||+++|++.. ..+.+++.+|.+...+.+....       ...+.+|||||..+....  -+....
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~~--~~~~~~   74 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-------NMTLNLWDCGGQDVFMEN--YFTKQK   74 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-------TEEEEEEEECCSHHHHHH--HHTTTH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-------ceEEEEEECCCcHHHhhh--hhhhHH
Confidence            589999999999999999988874 3446788899888877765321       247999999997543100  001112


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ...++.+|++++|+|+++..+.+++..+.+++..+.....+.|+++|+||+|+..
T Consensus        75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            3445789999999999988777777666555544321124689999999999987

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.54  E-value=5.3e-15  Score=133.77  Aligned_cols=124  Identities=23%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeee-eccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl-~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ..+|+|+|.+|||||||+++|++..... ..+..|+- +.....+.....    .....+.+|||||+.+.       ..
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~-------~~   88 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT----TVSVELFLLDTAGSDLY-------KE   88 (208)
T ss_dssp             EEEEEEC----------------------------------CEEEECTTS----SEEEEEEEEETTTTHHH-------HH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCc----ccEEEEEEEECCCcHHH-------HH
Confidence            3689999999999999999999874333 34444442 344444443310    00246999999998543       22


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPE  406 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kP~IIVlNK~Dl~~  406 (421)
                      .+..+++.+|++++|+|++++.+.+....+..++..+... ....|+++|+||+|+..
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            2345578899999999999876666666677777665421 23689999999999976

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.54  E-value=8.7e-15  Score=129.62  Aligned_cols=113  Identities=12%  Similarity=0.109  Sum_probs=77.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.+...  +..|+.+.....+..+.      ....+.+|||||..+            .
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~------------~   67 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDG------QTHLVLIREEAGAPD------------A   67 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETT------EEEEEEEEECSSSCC------------H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECC------EEEEEEEEECCCCch------------h
Confidence            589999999999999999999876432  22222211111222111      124689999999653            1


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLP  405 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kP~IIVlNK~Dl~  405 (421)
                      .+++.+|++++|+|++++.+.+....+.+++..+.. ...+.|+++|+||+|+.
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            345679999999999987766666666556655422 12468999999999994

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.54  E-value=8.1e-15  Score=133.62  Aligned_cols=119  Identities=19%  Similarity=0.196  Sum_probs=80.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++..... .+..|+.......+....      ....+.+|||||..+..    .+   ..
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~---~~   91 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDG------KQVELALWDTAGQEDYD----RL---RP   91 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETT------EEEEEEEECCCCSGGGT----TT---GG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECC------EEEEEEEEECCCchhHH----HH---HH
Confidence            589999999999999999999876432 232232222212222111      12368999999975432    11   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|++++...+.. ..+..++..+.   .+.|+++|+||+|+....
T Consensus        92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~  145 (201)
T 2gco_A           92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDE  145 (201)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCH
T ss_pred             HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCc
Confidence            357889999999999876655555 45666666643   368999999999998653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.54  E-value=3.1e-15  Score=132.50  Aligned_cols=120  Identities=19%  Similarity=0.150  Sum_probs=75.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++... ...+..|+.+.....+...      .....+.+|||||..+..    .+   .
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~~----~~---~   73 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVN------GATVNLGLWDTAGQEDYN----RL---R   73 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------------CEEECCCC-CTTT----TT---G
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEEC------CEEEEEEEEECCCChhhh----hh---H
Confidence            36899999999999999999997653 2334444432222112111      112357899999975432    11   2


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.+|++++|+|++++.+.+... .+..++..+.   .+.|+++|+||+|+.+..
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~  128 (182)
T 3bwd_D           74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDK  128 (182)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCH
T ss_pred             HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCc
Confidence            24567899999999998866666654 4666777654   368999999999987543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.54  E-value=4.8e-15  Score=135.74  Aligned_cols=119  Identities=19%  Similarity=0.196  Sum_probs=78.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++..... .+..|+.......+....      ....+.+|||||..+...    +   ..
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~---~~   91 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDG------KQVELALWDTAGQEDYDR----L---RP   91 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETT------EEEEEEEEECTTCTTCTT----T---GG
T ss_pred             cEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECC------EEEEEEEEECCCcHHHHH----H---HH
Confidence            589999999999999999999876432 232333222212222111      124689999999765421    1   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++.+|++++|+|++++.+.+.. ..+..++..+.   .+.|+++|+||+|+....
T Consensus        92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~  145 (207)
T 2fv8_A           92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDE  145 (207)
T ss_dssp             GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCH
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccc
Confidence            456889999999999876555555 45566666543   368999999999997653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.54  E-value=2e-14  Score=140.04  Aligned_cols=84  Identities=18%  Similarity=0.250  Sum_probs=54.0

Q ss_pred             cceEEecCCccccccc------ccCchhHHHHHhcccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655          327 SEATLADLPGLIEGAH------LGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVL  399 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~------~~~gl~~~fL~~i~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVl  399 (421)
                      .+++++||||+.+.+.      ....+...+..+++.+|++++|+|++.... ..+...+..++..     .++|+++|+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~~i~v~  205 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKRTIGVI  205 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSSEEEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCcEEEEE
Confidence            4799999999976331      112244556678899999999999854332 2333334444432     468999999


Q ss_pred             eCCCCCCCCC-chHHHH
Q 014655          400 NKIDLPEMYD-DSSSRQ  415 (421)
Q Consensus       400 NK~Dl~~~~e-~~~~l~  415 (421)
                      ||+|+....+ ..+.++
T Consensus       206 NK~Dl~~~~~~~~~~~~  222 (315)
T 1jwy_B          206 TKLDLMDKGTDAMEVLT  222 (315)
T ss_dssp             ECTTSSCSSCCCHHHHT
T ss_pred             cCcccCCcchHHHHHHh
Confidence            9999987654 344443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.54  E-value=9.5e-15  Score=132.60  Aligned_cols=119  Identities=19%  Similarity=0.215  Sum_probs=75.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++.+.. ..  ..|.......+...        ...+.+|||||..+..    .   .+
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~----~---~~   90 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK--------NICFTVWDVGGQDKIR----P---LW   90 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEET--------TEEEEEEECC-----C----T---TH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEEC--------CEEEEEEECCCCHhHH----H---HH
Confidence            468999999999999999999876532 11  11222222223221        2479999999985431    1   23


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...++.+|++++|+|++++...+....++..+... ....+.|+++|+||+|+.....
T Consensus        91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~  147 (192)
T 2b6h_A           91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE-DELRDAVLLVFANKQDMPNAMP  147 (192)
T ss_dssp             HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcc-cccCCCeEEEEEECCCCCCCCC
Confidence            34568899999999999876555544444443321 1124689999999999976543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.54  E-value=9.3e-15  Score=131.86  Aligned_cols=120  Identities=16%  Similarity=0.078  Sum_probs=82.1

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+++|.+|||||||+++|++... ...+..|+.......+....      ....+.+|||||..+..    .   .
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~----~---~   87 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKN------EEFILHLWDTAGQEEYD----R---L   87 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGGT----T---T
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECC------EEEEEEEEECCCcHHHH----H---H
Confidence            346899999999999999999998764 23344443332222222211      12357999999965432    1   1


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ....++.+|++++|+|++++.+.++. ..+..++..+.   .+.|+++|+||+|+...
T Consensus        88 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~  142 (194)
T 3reg_A           88 RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKD  142 (194)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCT
T ss_pred             hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC
Confidence            23457789999999999987666554 45666666653   46899999999999753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.53  E-value=1.1e-14  Score=132.98  Aligned_cols=116  Identities=26%  Similarity=0.328  Sum_probs=75.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.+..  .+. +|..+..+.+..+        +..+.+|||||..+..    .+   +.
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~--------~~~l~i~Dt~G~~~~~----~~---~~   87 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIA--------GMTFTTFDLGGHIQAR----RV---WK   87 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEET--------TEEEEEEEECC----C----CG---GG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEEC--------CEEEEEEECCCcHhhH----HH---HH
Confidence            58999999999999999999876532  222 2444444444433        2478999999976532    12   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|++++.+.+....+..++.... ...+.|+++|+||+|+...
T Consensus        88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~  141 (198)
T 1f6b_A           88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEA  141 (198)
T ss_dssp             GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTC
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCcccc
Confidence            45678999999999998766555555544443321 1246899999999999763

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.53  E-value=3e-14  Score=142.84  Aligned_cols=127  Identities=33%  Similarity=0.512  Sum_probs=92.5

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC-chh-
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLG-  348 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~-gl~-  348 (421)
                      ....|+++|.+|||||||+|+|++....+.+++++|.+...+.+...        ...+.++||||+.+...... .+. 
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~  237 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--------YFRYQIIDTPGLLDRPISERNEIEK  237 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--------TEEEEEEECTTTSSSCSTTSCHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--------CceEEEEeCCCccccchhhhhHHHH
Confidence            44689999999999999999999988777889999988877765432        24689999999976432211 111 


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCC--ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~--~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+......+|++++|+|+++..  ..+....+..++.....   ++|+++|+||+|+....
T Consensus       238 ~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~  296 (357)
T 2e87_A          238 QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEE  296 (357)
T ss_dssp             HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHH
T ss_pred             HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChH
Confidence            22333334699999999998765  45555556666655331   68999999999998654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.53  E-value=8.1e-15  Score=150.98  Aligned_cols=125  Identities=29%  Similarity=0.354  Sum_probs=88.0

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ...+|+|+|.+|+|||||+|+|++.... +.+++++|.++....+.....       ..+.+|||||+.+..........
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-------~~l~liDTpG~~d~~~l~~~~~~  105 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVDTPGLDDVGELGRLRVE  105 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-------EEEEEEECSSTTCCCTTCCCCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-------CeEEEEECcCCCcccchhHHHHH
Confidence            3468999999999999999999998764 478899999888777765421       27999999999876544444445


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      ..+..+..+|++|+|+|++   ..+....+..++..+     +.|+++|+||+|+......
T Consensus       106 ~~~~~l~~aD~vllVvD~~---~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~  158 (423)
T 3qq5_A          106 KARRVFYRADCGILVTDSA---PTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE  158 (423)
T ss_dssp             HHHHHHTSCSEEEEECSSS---CCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT
T ss_pred             HHHHHHhcCCEEEEEEeCC---ChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH
Confidence            5677889999999999982   234445677777763     6899999999999876543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.53  E-value=1.6e-14  Score=129.50  Aligned_cols=119  Identities=21%  Similarity=0.220  Sum_probs=79.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|+..+.. ...|  |.......+...        ...+.++||||..+....       +
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~~~~-------~   83 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYK--------NISFEVWDLGGQTGVRPY-------W   83 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEET--------TEEEEEEEECCSSSSCCC-------C
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEEC--------CEEEEEEECCCCHhHHHH-------H
Confidence            468999999999999999999865531 1111  222222222222        247899999998654221       1


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...++.+|++++|+|++++...+....++..+... ....+.|+++|+||+|+....+
T Consensus        84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~  140 (189)
T 2x77_A           84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE-DELRKSLLLIFANKQDLPDAAS  140 (189)
T ss_dssp             SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTC-STTTTCEEEEEEECTTSTTCCC
T ss_pred             HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh-hhcCCCeEEEEEECCCCcCCCC
Confidence            23467899999999999877666555444443321 1224689999999999987643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.53  E-value=1e-14  Score=132.08  Aligned_cols=120  Identities=19%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++.+... .+..|+.......+..+.      ....+.+|||||..+     .   ...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-----~---~~~   92 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDD------EVVSMEILDTAGQED-----T---IQR   92 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT------EEEEEEEEECCCCCC-----C---HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECC------EEEEEEEEECCCCCc-----c---cch
Confidence            3689999999999999999999876432 233332222211122111      124689999999765     1   223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+++.+|++++|+|++++.+.+....+..++..+.. ..+.|+++|+||+|+...
T Consensus        93 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~  147 (196)
T 2atv_A           93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHS  147 (196)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGG
T ss_pred             hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccc
Confidence            4556789999999999987666666666666665421 246899999999999764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.53  E-value=4.4e-15  Score=137.76  Aligned_cols=122  Identities=18%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+|+|.+|||||||+++|++........+..+.+.....+....      ....+.+|||||..+...    +   
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~---   78 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG------KRIKAQIWDTAGQERYRA----I---   78 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETT------EEEEEEEECCTTTTTTTC----C---
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC------EEEEEEEEECCCccchhh----h---
Confidence            347899999999999999999998765443333333222222222221      123789999999755321    1   


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...+++.+|++|+|+|++++...+....+..++..+..  ...|+++|+||+|+...
T Consensus        79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~  133 (223)
T 3cpj_B           79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHL  133 (223)
T ss_dssp             CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGG
T ss_pred             HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc
Confidence            23456789999999999987666666666677766532  46899999999999754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.53  E-value=1.7e-14  Score=137.26  Aligned_cols=126  Identities=16%  Similarity=0.102  Sum_probs=83.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCC-CC-eeeeccceeecCCCCCCccccccceEEecCCcccccccccCc---
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY-PF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG---  346 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~-pf-TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g---  346 (421)
                      ..+|+|+|.+|||||||+|+|++....+..+ +. +|.....+.+...        +..+.|+||||+.+.......   
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~i~iiDTpG~~~~~~~~~~~~~   93 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--------NREIVIIDTPDMFSWKDHCEALYK   93 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--------TEEEEEEECCGGGGSSCCCHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--------CCEEEEEECcCCCCCCCCHHHHHH
Confidence            3689999999999999999999887555333 33 5655555544432        347999999999876443222   


Q ss_pred             -hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEe-CCCCCCC
Q 014655          347 -LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN-KIDLPEM  407 (421)
Q Consensus       347 -l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlN-K~Dl~~~  407 (421)
                       +...+...+..+|++|+|+|++. . ......++..+..+.......|.++|+| |+|+...
T Consensus        94 ~i~~~~~~~~~~~d~il~V~d~~~-~-~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A           94 EVQRCYLLSAPGPHVLLLVTQLGR-Y-TSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             HHHHHHHHHTTCCSEEEEEEETTC-C-CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred             HHHHHHHhcCCCCcEEEEEEeCCC-C-CHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence             12333446788999999999985 2 2223334455554321112467788887 9999853

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.53  E-value=6.4e-15  Score=135.97  Aligned_cols=120  Identities=21%  Similarity=0.173  Sum_probs=71.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+++|.+|||||||+++|++.... ..+..|+.+.....+....      ....+.+|||||..+..    .+   .
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~~----~~---~   99 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKG------KPVHLHIWDTAGQDDYD----RL---R   99 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETT------EEEEEEEEEC-----------------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECC------EEEEEEEEECCCchhhh----HH---H
Confidence            368999999999999999999976532 2333344333222222211      12368999999975431    11   2


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+..+|++++|+|++++.+.+... .+..++..+.   .+.|+++|+||+|+....
T Consensus       100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~  154 (214)
T 2j1l_A          100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDK  154 (214)
T ss_dssp             -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCH
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccc
Confidence            23467899999999999766555553 4566666554   368999999999997654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.7e-14  Score=129.56  Aligned_cols=125  Identities=18%  Similarity=0.190  Sum_probs=75.1

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+++|.+|||||||+++|++.....   ..++..+.... .+.        ...+.+|||||+.+..   ..+...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~-~~~--------~~~~~l~Dt~G~~~~~---~~~~~~  111 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA-DYD--------GSGVTLVDFPGHVKLR---YKLSDY  111 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCC--------CTTCSEEEETTCCBSS---CCHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceee-eec--------CCeEEEEECCCCchHH---HHHHHH
Confidence            44689999999999999999999876322   01111121111 111        2468999999986542   222333


Q ss_pred             HHHhcccCCEEEEEeeCC-CCCChhhHHHHHHHHHhc-CC-CCCCCCEEEEEeCCCCCCCCCc
Q 014655          351 FLRHLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMY-NP-DYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s-~~~~~~~~~~l~~eL~~~-~~-~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      +...++.+|++++|+|++ +.........++..+... .. .....|+++|+||+|+....+.
T Consensus       112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence            344566799999999998 433333333332222211 00 1136899999999999876543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.52  E-value=3.3e-14  Score=130.17  Aligned_cols=123  Identities=21%  Similarity=0.122  Sum_probs=76.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH-H
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-N  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~-~  350 (421)
                      ..+|+++|.+|||||||+++|++.. ....++.++.+  ...+..+..     ....+.+|||||..+.       .. .
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~~~--~~~~~~~~~-----~~~~~~i~Dt~G~~~~-------~~~~   71 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDS--SAIYKVNNN-----RGNSLTLIDLPGHESL-------RFQL   71 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCSCE--EEEEECSST-----TCCEEEEEECCCCHHH-------HHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-cccccCCccee--eEEEEecCC-----CccEEEEEECCCChhH-------HHHH
Confidence            3689999999999999999999876 33445433322  222332210     0246999999998643       11 1


Q ss_pred             HHHhcccCCEEEEEeeCCCCC-Chh-hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAEN-PVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~-~~~-~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...+++.+|++++|+|+++.. ... ..+.+..++..........|+++|+||+|+.....
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  132 (214)
T 2fh5_B           72 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  132 (214)
T ss_dssp             HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             HHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc
Confidence            223478899999999998621 111 12223333332211224689999999999987654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.52  E-value=7.2e-15  Score=134.43  Aligned_cols=118  Identities=21%  Similarity=0.174  Sum_probs=82.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++... ...+..|+.+.....+..+.      ....+.+|||||..+...    +   ..
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~---~~   75 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDG------QIVNLGLWDTAGQEDYSR----L---RP   75 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSS------CEEEEEEECCCCCCCCCC---------C
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECC------EEEEEEEEECCCcHHHHH----H---HH
Confidence            5899999999999999999997653 23444444333322332221      124789999999865421    1   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+++.+|++++|+|++++.+.+... .|..++..+.   .+.|+++|+||+|+...
T Consensus        76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRDD  128 (212)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTC
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhhC
Confidence            3578899999999999866665554 5666776654   36899999999998754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.52  E-value=2.7e-14  Score=147.00  Aligned_cols=124  Identities=26%  Similarity=0.285  Sum_probs=85.0

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-C---
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-K---  345 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-~---  345 (421)
                      ...+|+|||.||||||||+|+|++.... ++++++||.++..+.+..+        +..+.++||||+....... .   
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~--------g~~~~l~Dt~G~~~~~~~~~~~~e  250 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID--------GRKYVFVDTAGLRRKSRVEPRTVE  250 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET--------TEEEEESSCSCC-----------C
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC--------CEEEEEEECCCCccccccchhhHH
Confidence            3468999999999999999999998764 5899999999988877654        2468999999985432211 0   


Q ss_pred             -chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          346 -GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       346 -gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                       -.....+.+++.+|++++|+|++.....++. .+...+..     .++|+++|+||+|+.+.+
T Consensus       251 ~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-----~~~~~ilv~NK~Dl~~~~  308 (439)
T 1mky_A          251 KYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-----RGRASVVVFNKWDLVVHR  308 (439)
T ss_dssp             CSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGGGSTTG
T ss_pred             HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCCCch
Confidence             0112235678899999999999876665543 34455554     468999999999997654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.51  E-value=3.2e-14  Score=130.56  Aligned_cols=128  Identities=15%  Similarity=0.110  Sum_probs=79.5

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC----CccccccceEEecCCcccccccccC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----GAEKYSSEATLADLPGLIEGAHLGK  345 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----~~~~~~~~i~iiDtPGlie~a~~~~  345 (421)
                      ....+|+|+|.+|||||||+++|++........+..+.+.....+......    ........+.||||||..+.     
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----   97 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF-----   97 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-----
Confidence            345799999999999999999999876432222211122222122211000    00001246999999996542     


Q ss_pred             chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCC--CCCCEEEEEeCCCCCCC
Q 014655          346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY--LERPFIVVLNKIDLPEM  407 (421)
Q Consensus       346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l--~~kP~IIVlNK~Dl~~~  407 (421)
                        ...+..+++.+|++|+|+|+++....   ..+..++..+....  ...|+++|+||+|+...
T Consensus        98 --~~~~~~~~~~~d~iilV~D~~~~~s~---~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~  156 (217)
T 2f7s_A           98 --RSLTTAFFRDAMGFLLMFDLTSQQSF---LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ  156 (217)
T ss_dssp             --HHHHHHHHTTCCEEEEEEETTCHHHH---HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred             --HhHHHHHhcCCCEEEEEEECcCHHHH---HHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence              23345667899999999999875443   34444555443222  46899999999999764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.51  E-value=1.5e-14  Score=132.93  Aligned_cols=121  Identities=17%  Similarity=0.109  Sum_probs=79.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ..+|+|+|.+|||||||+|+|++.....  .....++....... ...      .....+.+|||||..+..    .+..
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~------~~~~~~~l~Dt~G~~~~~----~~~~   79 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFL-DDQ------GNVIKFNVWDTAGQEKKA----VLKD   79 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEE-BTT------SCEEEEEEEEECSGGGTS----CCCH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEE-eCC------CcEEEEEEEecCCchhhc----hHHH
Confidence            4689999999999999999999765332  12222222111111 111      011368999999976542    1222


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                         ..+..+|++++|+|+++..+.++...+..++..+..  .+.|+++|+||+|+....
T Consensus        80 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~  133 (218)
T 4djt_A           80 ---VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQ  133 (218)
T ss_dssp             ---HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC---
T ss_pred             ---HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc
Confidence               346789999999999987666666666666665432  358999999999998653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.51  E-value=1.9e-14  Score=128.97  Aligned_cols=117  Identities=17%  Similarity=0.175  Sum_probs=79.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.... ..+..|+.......+....      ....+.+|||||..+...    +.   .
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~~---~   73 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDT------QRIELSLWDTSGSPYYDN----VR---P   73 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSS------CEEEEEEEEECCSGGGTT----TG---G
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECC------EEEEEEEEECCCChhhhh----hH---H
Confidence            58999999999999999999986532 2233332222222222221      124689999999755321    21   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++.+|++++|+|++++.+.+.. ..+..++..+.   .+.|+++|+||+|+..
T Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRT  125 (184)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGG
T ss_pred             hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhc
Confidence            346889999999999986655555 45666666654   3689999999999974

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.50  E-value=2.1e-14  Score=132.64  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=85.5

Q ss_pred             ceecccCCCCCChhHHHHHHh-cCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAIT-HAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt-~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|+++|.+|||||||++++. +.... ..+.+++|.......+...        ...+.+|||||.....    .+.. 
T Consensus        16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~----~~~~-   82 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--------PIKFNVWDTAGQEKFG----GLRD-   82 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTE--------EEEEEEEEECSGGGTS----CCCH-
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------EEEEEEEeCCChHHHh----HHHH-
Confidence            689999999999999999954 33222 3566666766555544322        2478999999975432    2222 


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                        ..+..+|++++|+|+++....+....+..++..+.   .+.|+++|+||+|+....
T Consensus        83 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~  135 (221)
T 3gj0_A           83 --GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRK  135 (221)
T ss_dssp             --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCS
T ss_pred             --HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccccc
Confidence              34678999999999998766667667777776654   368999999999997643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.49  E-value=3.7e-14  Score=131.16  Aligned_cols=118  Identities=17%  Similarity=0.164  Sum_probs=82.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|++.... ..+..|+.......+....      ....+.+|||||..+..    .+.   
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~~---   92 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEE------QRVELSLWDTSGSPYYD----NVR---   92 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--------CEEEEEEEEECCSGGGT----TTG---
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECC------EEEEEEEEECCCCHhHH----HHH---
Confidence            368999999999999999999987643 3333333322222222221      12478999999976542    122   


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhh-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ...+..+|++|+|+|++++.+.+. ...|..++..+.   .+.|+++|+||+|+..
T Consensus        93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~  145 (214)
T 3q3j_B           93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRT  145 (214)
T ss_dssp             GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGG
T ss_pred             HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence            234678999999999998776666 566777777764   3689999999999975

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.49  E-value=2.6e-14  Score=128.98  Aligned_cols=120  Identities=17%  Similarity=0.171  Sum_probs=79.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|++... ...+..|+.+.....+...      .....+.+|||||..+..    .+    .
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~----~   86 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVD------HQPVHLRVMDTADLDTPR----NC----E   86 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEET------TEEEEEEEEECCC---CC----CT----H
T ss_pred             EEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEEC------CEEEEEEEEECCCCCcch----hH----H
Confidence            6899999999999999999998762 2344444433221122111      112468899999976542    12    2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..+|++++|+|++++.+.+....+..++..+.. .....|+++|+||+|+...
T Consensus        87 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~  142 (187)
T 3c5c_A           87 RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY  142 (187)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence            456789999999999976666666666666655310 0136899999999999654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.24  E-value=2e-15  Score=137.62  Aligned_cols=122  Identities=20%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +...+|+++|.+|||||||+++|++... ...+..|+.+.....+..+      .....+.+|||||..+..       .
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~-------~   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD------GKPVNLGLWDTAGQEDYD-------R   93 (204)
Confidence            3456899999999999999999986543 2333444433322222221      112357799999976532       1


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .....++.+|++++|+|++++.+.++.. .+..++..+.   .+.|+++|+||+|+....
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~  150 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK  150 (204)
Confidence            2234467899999999999877666654 4555555432   268999999999997643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.49  E-value=2.9e-14  Score=131.33  Aligned_cols=119  Identities=18%  Similarity=0.175  Sum_probs=81.3

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ...+|+++|.+|||||||+++|++.... ..+..|+.......+..+.      ....+.+|||||..+..    .+.  
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~~--   93 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDT------QRIELSLWDTSGSPYYD----NVR--   93 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSS------SEEEEEEEEECCSGGGT----TTG--
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECC------EEEEEEEEeCCCcHhhh----HHH--
Confidence            3468999999999999999999987543 2333333222222222221      12478999999976532    122  


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                       ...++.+|++++|+|++++.+.+.. ..|..++..+.   .+.|+++|+||+|+..
T Consensus        94 -~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           94 -PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRT  146 (205)
T ss_dssp             -GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGG
T ss_pred             -HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhcc
Confidence             2346889999999999986655555 45666676654   3689999999999974

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.49  E-value=4e-14  Score=128.51  Aligned_cols=123  Identities=18%  Similarity=0.152  Sum_probs=77.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ..+|+++|.+|||||||++++++.....  ....+++... ...+...       ....+.+|||||..+...    +..
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~l~i~Dt~G~~~~~~----~~~   87 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY-KDDISNS-------SFVNFQIWDFPGQMDFFD----PTF   87 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCE-EEEECCT-------TSCCEEEEECCSSCCTTC----TTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcCCCcceeeecccccee-eeeccCC-------CeeEEEEEECCCCHHHHh----hhh
Confidence            4689999999999999999998853221  0111111110 0011111       124799999999755311    110


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ....+++.+|++|+|+|+++. ..+.+..+..++........+.|+++|+||+|+...
T Consensus        88 ~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           88 DYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             CHHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             hcccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence            003456789999999999976 455556666666553111247899999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.48  E-value=3.9e-14  Score=136.66  Aligned_cols=134  Identities=19%  Similarity=0.217  Sum_probs=79.4

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCC------ccCCCC----------------------eeeeccceee-------c
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPD------IADYPF----------------------TTLMPNLGRL-------D  315 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~------ia~~pf----------------------TTl~p~~g~v-------~  315 (421)
                      ..++|+++|.+|||||||+|+|++.+..      +...|.                      ||.+.....+       .
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            3479999999999999999999988743      233343                      3322110000       0


Q ss_pred             CC--CCCCcc-------ccccceEEecCCccccccc--ccC----chhHHHHHhcccCCEEE-EEeeCCCCCChhhHHHH
Q 014655          316 GD--PTLGAE-------KYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHLRRTRLLV-HVIDAAAENPVNDYRTV  379 (421)
Q Consensus       316 ~~--~~~~~~-------~~~~~i~iiDtPGlie~a~--~~~----gl~~~fL~~i~radvIl-~VvD~s~~~~~~~~~~l  379 (421)
                      ..  ......       .....+++|||||+.+...  +..    ........+++.++.++ +|+|++......+...+
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence            00  000000       0024799999999976431  012    23334456677777665 79999865433333234


Q ss_pred             HHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          380 KEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       380 ~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+++..     .+.|+++|+||+|+.+..+
T Consensus       185 ~~~~~~-----~~~~~i~V~NK~Dl~~~~~  209 (299)
T 2aka_B          185 AKEVDP-----QGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHHHCT-----TCSSEEEEEECGGGSCTTC
T ss_pred             HHHhCC-----CCCeEEEEEEccccCCCCc
Confidence            444432     4689999999999986544

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.48  E-value=2.4e-14  Score=137.77  Aligned_cols=119  Identities=28%  Similarity=0.424  Sum_probs=85.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~  349 (421)
                      ..+|+|+|.+|||||||+|+|++....+.+++++|.+...+.+...        +..+.++||||+.+....  ...+.+
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~~~~~~   74 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--------EKEFLVVDLPGIYSLTAHSIDELIAR   74 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--------TEEEEEEECCCCSCCCSSCHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--------CceEEEEeCCCccccccCCHHHHHHH
Confidence            3589999999999999999999988777889999988877776643        246999999998764321  111233


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .|+. .+.+|++++|+|+++.  ... ..+...+...    ...|+++|+||+|+..
T Consensus        75 ~~~~-~~~~d~vi~v~D~~~~--~~~-~~~~~~~~~~----~~~p~ilv~NK~Dl~~  123 (271)
T 3k53_A           75 NFIL-DGNADVIVDIVDSTCL--MRN-LFLTLELFEM----EVKNIILVLNKFDLLK  123 (271)
T ss_dssp             HHHH-TTCCSEEEEEEEGGGH--HHH-HHHHHHHHHT----TCCSEEEEEECHHHHH
T ss_pred             Hhhh-ccCCcEEEEEecCCcc--hhh-HHHHHHHHhc----CCCCEEEEEEChhcCc
Confidence            3322 3689999999999863  222 2333344332    1289999999999754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.48  E-value=7.5e-14  Score=125.96  Aligned_cols=112  Identities=19%  Similarity=0.102  Sum_probs=76.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|++........+  |.......+..+.      ....+.+|||||..+.            
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~------------   80 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDG------QSYLLLIRDEGGPPEL------------   80 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETT------EEEEEEEEECSSSCCH------------
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECC------EEEEEEEEECCCChhh------------
Confidence            5899999999999999999988764321111  1211112222221      1246788999997542            


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ++++.+|++++|+|++++.+.+....+..++..+. ...+.|+++|+||+|+.
T Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           81 QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCB
T ss_pred             heecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccc
Confidence            15677999999999998766666666666666542 12468999999999995

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.48  E-value=5.7e-14  Score=135.46  Aligned_cols=127  Identities=17%  Similarity=0.144  Sum_probs=72.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCC------CeeeeccceeecCCCCCCccccccceEEecCCccccccccc--
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--  344 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~p------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~--  344 (421)
                      .+|++||.+|||||||+|+|++.+....+++      .+|............    ......++|+||||+.+.....  
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE----GGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC------CCEEEEEEECCCCSCCSCCTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec----CCeEEEEEEEECCCccccccchhh
Confidence            5899999999999999999998887665553      334333322222110    0112379999999985432211  


Q ss_pred             -Cchh-------HHHHHh----------cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          345 -KGLG-------RNFLRH----------LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       345 -~gl~-------~~fL~~----------i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                       ..+.       ..++..          -.++|+++|++|.+..........++.++..      .+|+|+|+||+|+..
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT  158 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence             1111       222222          1237899999987753322222334444442      689999999999976


Q ss_pred             CCC
Q 014655          407 MYD  409 (421)
Q Consensus       407 ~~e  409 (421)
                      ..+
T Consensus       159 ~~e  161 (274)
T 3t5d_A          159 PEE  161 (274)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.46  E-value=6e-14  Score=139.41  Aligned_cols=126  Identities=21%  Similarity=0.258  Sum_probs=81.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|++.+. +..+  .|.......+...        ...+.|+||||..+..    .+   .
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~--pT~~~~~~~~~~~--------~~~l~i~Dt~G~~~~~----~~---~  226 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLGEI-VTTI--PTIGFNVETVEYK--------NISFTVWDVGGQDKIR----PL---W  226 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSSCC-EEEE--EETTEEEEEEEET--------TEEEEEEECC-----C----CS---H
T ss_pred             cceEEEECCCCccHHHHHHHHhCCCC-CCcc--cccceEEEEEecC--------cEEEEEEECCCCHhHH----HH---H
Confidence            34899999999999999999987663 2222  2444344444332        2479999999965431    22   3


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHh
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQG  416 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~  416 (421)
                      ...++.+|++|+|+|+++....+....++..+... ....+.|+++|+||+|+....+..+..+.
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~~~~i~~~  290 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNAAEITDK  290 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred             HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccCHHHHHHH
Confidence            34567899999999999887776655444443321 11246899999999999876544433333

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.45  E-value=6e-14  Score=136.51  Aligned_cols=122  Identities=21%  Similarity=0.187  Sum_probs=85.3

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      ++...+|+++|.+|+|||||++++++... ...+..|+.+.....+..+.      ....+.+|||||..+..    .+ 
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~----~~-  219 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGLEDYD----RL-  219 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETT------EEEEEEEEEECCCGGGT----TT-
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECC------EEEEEEEEeCCCchhhh----HH-
Confidence            45567999999999999999999997653 34455555544433333221      12356799999976542    11 


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        ....+..+|++++|+|++++.+.++.. .+..++..+..   +.|+++|+||+|+...
T Consensus       220 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          220 --RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  274 (332)
T ss_dssp             --GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC
T ss_pred             --HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc
Confidence              224578899999999999866555554 45566666542   6899999999999654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.45  E-value=3.7e-13  Score=123.50  Aligned_cols=120  Identities=16%  Similarity=0.165  Sum_probs=76.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      .++|+|+|.+|+|||||+++|++.....  ..+..++... .             ....+.++||||+.+..    .+..
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~l~Dt~G~~~~~----~~~~   73 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-Y-------------DGSGVTLVDFPGHVKLR----YKLS   73 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-G-------------GGSSCEEEECCCCGGGT----HHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-e-------------eCceEEEEECCCcHHHH----HHHH
Confidence            3689999999999999999999876322  1222221111 0             12468999999986541    2233


Q ss_pred             HHHH-hcccCCEEEEEeeCC-CCCChhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCCCC
Q 014655          350 NFLR-HLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       350 ~fL~-~i~radvIl~VvD~s-~~~~~~~~~~l~~eL~~~~~--~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+++ .+..+|++++|+|++ +.........+..++.....  ...+.|+++|+||+|+....+
T Consensus        74 ~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  137 (218)
T 1nrj_B           74 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  137 (218)
T ss_dssp             HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             HHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence            3332 234589999999998 65555544444433322100  114689999999999987654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.45  E-value=9.5e-14  Score=141.71  Aligned_cols=101  Identities=33%  Similarity=0.539  Sum_probs=83.1

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCC-C-------Cc-cccccceEEecCCccc
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPT-L-------GA-EKYSSEATLADLPGLI  338 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~-~-------~~-~~~~~~i~iiDtPGli  338 (421)
                      ++....|+|||.||||||||+|+|++... .++++||||++|+.|.+..... .       .. ......+.++||||+.
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~   96 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   96 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence            34456899999999999999999999887 6799999999999998765320 0       00 0001258999999999


Q ss_pred             ccccccCchhHHHHHhcccCCEEEEEeeCCC
Q 014655          339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA  369 (421)
Q Consensus       339 e~a~~~~gl~~~fL~~i~radvIl~VvD~s~  369 (421)
                      .+++..++++..|+.+++.+|++++|+|+..
T Consensus        97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9998889999999999999999999999875

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.44  E-value=3e-13  Score=142.54  Aligned_cols=121  Identities=23%  Similarity=0.295  Sum_probs=83.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  345 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~  345 (421)
                      ..+|+|||.||||||||+++|++.+      +.++...+++..++.+.+.....    .....+.++||||..+.    .
T Consensus        41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~----~~~~~~~i~Dt~G~e~~----~  112 (535)
T 3dpu_A           41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE----LKECLFHFWDFGGQEIM----H  112 (535)
T ss_dssp             EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCST----TTTCEEEEECCCSCCTT----T
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCC----CceEEEEEEECCcHHHH----H
Confidence            3689999999999999999999876      33334444445555545443311    11357999999995443    2


Q ss_pred             chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .+...|   ++.+|++|+|+|+++.   ++...+..++..+.+   +.|+|+|+||+|+....+
T Consensus       113 ~~~~~~---l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~  167 (535)
T 3dpu_A          113 ASHQFF---MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYN  167 (535)
T ss_dssp             TTCHHH---HHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCC
T ss_pred             HHHHHH---ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccc
Confidence            234444   4569999999999753   566778888888763   589999999999986544

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.44  E-value=2.2e-13  Score=121.37  Aligned_cols=116  Identities=27%  Similarity=0.260  Sum_probs=76.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-------C
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-------K  345 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-------~  345 (421)
                      .+|+++|.+|||||||+++|++........|++|.......+            ..+.++||||+.......       .
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~------------~~~~l~Dt~G~~~~~~~~~~~~~~~~   69 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW------------KNHKIIDMPGFGFMMGLPKEVQERIK   69 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE------------TTEEEEECCCBSCCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec------------CCEEEEECCCccccccCCHHHHHHHH
Confidence            589999999999999999999987666667766655443322            158999999964321100       1


Q ss_pred             chhHHHHHh-cccCCEEEEEeeCCCCCChhhH-HH------------HHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          346 GLGRNFLRH-LRRTRLLVHVIDAAAENPVNDY-RT------------VKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       346 gl~~~fL~~-i~radvIl~VvD~s~~~~~~~~-~~------------l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+...+++. ...++++++|+|.++   .... ..            +...+..     .+.|+++|+||+|+....
T Consensus        70 ~~~~~~~~~~~~~~~~v~~v~d~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~  138 (190)
T 2cxx_A           70 DEIVHFIEDNAKNIDVAVLVVDGKA---APEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKNV  138 (190)
T ss_dssp             HHHHHHHHHHGGGCCEEEEEEETTH---HHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSCH
T ss_pred             HHHHHHHHhhhccCCEEEEEEcchh---hhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCcH
Confidence            122334444 667888888888753   2111 11            2222222     368999999999998753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.44  E-value=1.1e-13  Score=146.97  Aligned_cols=134  Identities=21%  Similarity=0.319  Sum_probs=84.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCC---ccCCCCeeeeccceeecCCC-------CC------C---ccccc----
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDP-------TL------G---AEKYS----  326 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~---ia~~pfTTl~p~~g~v~~~~-------~~------~---~~~~~----  326 (421)
                      ...+.|+|+|.+|||||||+|+|++.+..   +++.|.||...  +++....       ..      .   ...++    
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            34578999999999999999999998863   56777765421  1111100       00      0   00000    


Q ss_pred             -------------cceEEecCCccccccc--ccCc--hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC
Q 014655          327 -------------SEATLADLPGLIEGAH--LGKG--LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD  389 (421)
Q Consensus       327 -------------~~i~iiDtPGlie~a~--~~~g--l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~  389 (421)
                                   ..++|+||||+.+...  ..+.  +.......+.++|++|+|+|++.....+....+.+.+..    
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----  216 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----  216 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence                         3689999999976322  1222  223344567899999999999875444444444444433    


Q ss_pred             CCCCCEEEEEeCCCCCCCCCc
Q 014655          390 YLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       390 l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                       ...|+++|+||+|+...++.
T Consensus       217 -~~~pvilVlNK~Dl~~~~el  236 (550)
T 2qpt_A          217 -HEDKIRVVLNKADMVETQQL  236 (550)
T ss_dssp             -CGGGEEEEEECGGGSCHHHH
T ss_pred             -cCCCEEEEEECCCccCHHHH
Confidence             35789999999999876543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.43  E-value=2.4e-13  Score=127.52  Aligned_cols=120  Identities=19%  Similarity=0.142  Sum_probs=80.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+|||.+|||||||+++++..... ..|..|. .+-....+....      ....+.||||+|..+..    .+.   
T Consensus        14 ~KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~Tig~d~~~k~~~~~~------~~v~l~iwDtaGqe~~~----~l~---   79 (216)
T 4dkx_A           14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLED------RTIRLQLWDTAGLERFR----SLI---   79 (216)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSS------CEEEEEEECCSCTTTCG----GGH---
T ss_pred             EEEEEECcCCcCHHHHHHHHHhCCCC-CCcCCccceEEEEEEEEecc------eEEEEEEEECCCchhhh----hHH---
Confidence            48999999999999999999876522 2222111 111111122111      12468999999976542    232   


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.++++++|+|+++..+++.+..++.++..+..  .+.|+++|.||+|+.+..
T Consensus        80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r  134 (216)
T 4dkx_A           80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKR  134 (216)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGC
T ss_pred             HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcC
Confidence            2446889999999999998888888888887766543  468999999999997643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.42  E-value=3.3e-13  Score=137.48  Aligned_cols=126  Identities=24%  Similarity=0.276  Sum_probs=82.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeecccee-----ecCCCCC---Cc---cccccceEEecCCccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGR-----LDGDPTL---GA---EKYSSEATLADLPGLIEG  340 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~-----v~~~~~~---~~---~~~~~~i~iiDtPGlie~  340 (421)
                      .+|+++|.+|+|||||+++|++..... ..++.+|.......     +......   ..   ......+.++||||+.+ 
T Consensus         9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~-   87 (403)
T 3sjy_A            9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV-   87 (403)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG-
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH-
Confidence            589999999999999999999864322 23333332111000     0000000   00   00114799999999644 


Q ss_pred             ccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          341 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       341 a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                            +.......+..+|++++|+|+++..+..+...+...+..+.    .+|+++|+||+|+.+.++
T Consensus        88 ------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~----~~~iivviNK~Dl~~~~~  146 (403)
T 3sjy_A           88 ------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVSKEE  146 (403)
T ss_dssp             ------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSCHHH
T ss_pred             ------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC----CCCEEEEEECccccchHH
Confidence                  34556777889999999999998765555555555666543    268999999999987543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.42  E-value=4.4e-13  Score=138.37  Aligned_cols=116  Identities=22%  Similarity=0.184  Sum_probs=78.5

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPT  319 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~  319 (421)
                      ...+|+++|.+|+|||||+++|+.....+.                               ..+++|.+.....+...  
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~--   93 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE--   93 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC--
Confidence            446899999999999999999965432221                               11355666555554433  


Q ss_pred             CCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh------hhHHHHHHHHHhcCCCCCCC
Q 014655          320 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLER  393 (421)
Q Consensus       320 ~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~k  393 (421)
                            ...++||||||+.+.       .......+..||++|+|||+++....      .+.......+..     .+.
T Consensus        94 ------~~~~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-----~~v  155 (439)
T 3j2k_7           94 ------KKHFTILDAPGHKSF-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-----AGV  155 (439)
T ss_pred             ------CeEEEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-----cCC
Confidence                  247999999997543       34455667889999999999876431      122223333333     346


Q ss_pred             C-EEEEEeCCCCCC
Q 014655          394 P-FIVVLNKIDLPE  406 (421)
Q Consensus       394 P-~IIVlNK~Dl~~  406 (421)
                      | +|+|+||+|+..
T Consensus       156 ~~iIvviNK~Dl~~  169 (439)
T 3j2k_7          156 KHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEeecCCCcc
Confidence            6 899999999965

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.41  E-value=2.9e-13  Score=126.27  Aligned_cols=121  Identities=21%  Similarity=0.153  Sum_probs=77.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      ..+|+|||.+|||||||++++++....+ ..++.++.+.....+..+.      ....+.++||+|....        ..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~------~~~~l~~~Dt~g~~~~--------~~  102 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG------ESATIILLDMWENKGE--------NE  102 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT------EEEEEEEECCTTTTHH--------HH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECC------eeeEEEEeecCCCcch--------hh
Confidence            4689999999999999999999765433 3344333222222222211      1235789999996431        12


Q ss_pred             HHH--hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~--~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ++.  +.+.+|++++|+|+++..+++....++.++..... ..+.|+++|+||+|+.+.
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~  160 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRC  160 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGG
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcC
Confidence            222  24568999999999987666666666666654321 136899999999999753

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.40  E-value=6.8e-13  Score=132.89  Aligned_cols=136  Identities=21%  Similarity=0.218  Sum_probs=80.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccc-------------eeecCCCC-----------------
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-------------GRLDGDPT-----------------  319 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~-------------g~v~~~~~-----------------  319 (421)
                      ..++.|+|||.+|||||||+|+|++..........+|..|..             +.+...+.                 
T Consensus        32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~  111 (360)
T 3t34_A           32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET  111 (360)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence            456799999999999999999999976422111112211111             11100000                 


Q ss_pred             ---------CCc--------cccccceEEecCCcccccccc--c----CchhHHHHHhcccCCEEEEEeeCCCCCChhhH
Q 014655          320 ---------LGA--------EKYSSEATLADLPGLIEGAHL--G----KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY  376 (421)
Q Consensus       320 ---------~~~--------~~~~~~i~iiDtPGlie~a~~--~----~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~  376 (421)
                               ...        ......+++|||||+.+....  .    ..+...+..+++.+|++++|+|++..+...  
T Consensus       112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--  189 (360)
T 3t34_A          112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--  189 (360)
T ss_dssp             HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred             HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence                     000        000235899999999875321  1    122344567789999999999986544322  


Q ss_pred             HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          377 RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       377 ~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..+...+..+.+  .++|+++|+||+|+.+...
T Consensus       190 ~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~  220 (360)
T 3t34_A          190 SDAIKISREVDP--SGDRTFGVLTKIDLMDKGT  220 (360)
T ss_dssp             CHHHHHHHHSCT--TCTTEEEEEECGGGCCTTC
T ss_pred             HHHHHHHHHhcc--cCCCEEEEEeCCccCCCcc
Confidence            123334444433  4679999999999986543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.40  E-value=3.5e-13  Score=146.66  Aligned_cols=129  Identities=19%  Similarity=0.180  Sum_probs=85.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCe--------------eeecccee-------------ecCCC---
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFT--------------TLMPNLGR-------------LDGDP---  318 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfT--------------Tl~p~~g~-------------v~~~~---  318 (421)
                      +...+|+|+|.+|||||||+|+|++.+..+ +..|.|              |.+...+.             +....   
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            456789999999999999999999987654 555655              22110000             00000   


Q ss_pred             -------------------CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHH
Q 014655          319 -------------------TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTV  379 (421)
Q Consensus       319 -------------------~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l  379 (421)
                                         ..+.......+.|+||||+.+...    .......+++.||++|||+|++++....+...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l  222 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERRYL  222 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH
Confidence                               000000003699999999986421    234455778899999999999887766666555


Q ss_pred             HHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          380 KEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       380 ~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+.+..     ...|+++|+||+|+...
T Consensus       223 ~~~l~~-----~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          223 ENYIKG-----RGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHTTT-----SCCCEEEEEECGGGGGG
T ss_pred             HHHHHh-----hCCCEEEEEECcccccc
Confidence            544433     35789999999998654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.39  E-value=4.1e-13  Score=122.08  Aligned_cols=122  Identities=20%  Similarity=0.130  Sum_probs=77.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+|||.+|||||||+|+|++....+ ..++.++.+.....+..+.      ....+.++||+|....   ...+... 
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~Dt~~~~~~---~~~~~~~-   76 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDG------ESATIILLDMWENKGE---NEWLHDH-   76 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETT------EEEEEEEECCCCC-------CTTGGG-
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECC------eEEEEEEEEeccCcch---hhhHHHh-
Confidence            689999999999999999999754332 3344333322222222211      1235789999996431   1223222 


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        +++.+|++++|+|+++..+++....++..+..... ..+.|+++|.||+|+...
T Consensus        77 --~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~  129 (192)
T 2cjw_A           77 --CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRX  129 (192)
T ss_dssp             --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGG
T ss_pred             --hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhcc
Confidence              24568999999999987666666666666655421 136899999999999653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.39  E-value=6.8e-13  Score=120.60  Aligned_cols=121  Identities=21%  Similarity=0.143  Sum_probs=80.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|++........|..+.+...+.+..+.      ....+.++||||.....    .+... 
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g------~~~~~~i~Dt~g~~~~~----~~~~~-   73 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG------KTIKAQIWDTAGQERYR----RITSA-   73 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETT------EEEEEEEEECSSGGGTT----CCCHH-
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCchhhh----hhhHH-
Confidence            36899999999999999999998765443334333444445544331      12357899999975431    22222 


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                        ..+.++++++|+|+++....+....+..++.....  ...|+++|+||+|+.+.
T Consensus        74 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~  125 (199)
T 2f9l_A           74 --YYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHL  125 (199)
T ss_dssp             --HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG
T ss_pred             --HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc
Confidence              34678999999999876555555555555554321  35789999999999753

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.39  E-value=2.6e-13  Score=143.37  Aligned_cols=120  Identities=21%  Similarity=0.224  Sum_probs=84.3

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCc----------------cC------CCCeeeeccceeecCCCCCCcccc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------AD------YPFTTLMPNLGRLDGDPTLGAEKY  325 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~------~pfTTl~p~~g~v~~~~~~~~~~~  325 (421)
                      ++....+|+|+|.+|||||||+++|+.....+                .+      ..++|.......+...        
T Consensus         9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------   80 (528)
T 3tr5_A            9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--------   80 (528)
T ss_dssp             HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--------
T ss_pred             hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--------
Confidence            45567899999999999999999996322111                11      1233444443334332        


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ...+.||||||+.+.       .....+.++.+|++|+|+|+++....+... ++..+..     .+.|+++|+||+|+.
T Consensus        81 ~~~i~liDTPG~~df-------~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~-----~~iPiivviNK~Dl~  147 (528)
T 3tr5_A           81 DYLINLLDTPGHADF-------TEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL-----RHTPIMTFINKMDRD  147 (528)
T ss_dssp             TEEEEEECCCCSTTC-------CHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT-----TTCCEEEEEECTTSC
T ss_pred             CEEEEEEECCCchhH-------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEeCCCCc
Confidence            347999999998664       234678889999999999999876655544 4555554     368999999999997


Q ss_pred             CCC
Q 014655          406 EMY  408 (421)
Q Consensus       406 ~~~  408 (421)
                      ...
T Consensus       148 ~~~  150 (528)
T 3tr5_A          148 TRP  150 (528)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            643

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.38  E-value=5.8e-13  Score=139.12  Aligned_cols=114  Identities=23%  Similarity=0.252  Sum_probs=76.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC-------CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP-------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  345 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~-------~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~  345 (421)
                      .+|+++|.+|+|||||+++|++.+.       .....+++|.+.....+...        ...++++||||+.+      
T Consensus        20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~i~iiDtPGh~~------   85 (482)
T 1wb1_A           20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--------NYRITLVDAPGHAD------   85 (482)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--------TEEEEECCCSSHHH------
T ss_pred             CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--------CEEEEEEECCChHH------
Confidence            5899999999999999999998761       12334556666555444432        24799999999754      


Q ss_pred             chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                       +.......+..+|++|+|+|+++....+..+.+ ..+..     .+.|+++|+||+|+.+.
T Consensus        86 -~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~ip~IvviNK~Dl~~~  140 (482)
T 1wb1_A           86 -LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH-----FNIPIIVVITKSDNAGT  140 (482)
T ss_dssp             -HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCBCEEEECTTSSCH
T ss_pred             -HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH-HHHHH-----cCCCEEEEEECCCcccc
Confidence             244556778899999999999876544444433 34444     35788999999999864

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.37  E-value=5e-13  Score=143.49  Aligned_cols=118  Identities=15%  Similarity=0.141  Sum_probs=80.5

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccC-------------------------------CCCeeeeccceeecCCC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDP  318 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-------------------------------~pfTTl~p~~g~v~~~~  318 (421)
                      +...+|+++|.+|+|||||+++|+.....+..                               .+++|.+.....+... 
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence            44579999999999999999999976544322                               1455666555555443 


Q ss_pred             CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC------ChhhHHHHHHHHHhcCCCCCC
Q 014655          319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLE  392 (421)
Q Consensus       319 ~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~  392 (421)
                             ...++||||||+.+       +.......+..||++|+|||++.+.      ...+.......+...    .-
T Consensus       244 -------~~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l----gi  305 (611)
T 3izq_1          244 -------RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GI  305 (611)
T ss_dssp             -------SCEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT----TC
T ss_pred             -------CceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc----CC
Confidence                   24799999999854       3455567788999999999998631      111222233333331    12


Q ss_pred             CCEEEEEeCCCCCC
Q 014655          393 RPFIVVLNKIDLPE  406 (421)
Q Consensus       393 kP~IIVlNK~Dl~~  406 (421)
                      +|+|+|+||+|+.+
T Consensus       306 ~~iIVVvNKiDl~~  319 (611)
T 3izq_1          306 HNLIIAMNKMDNVD  319 (611)
T ss_dssp             CEEEEEEECTTTTT
T ss_pred             CeEEEEEecccccc
Confidence            45999999999986

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.37  E-value=7.6e-13  Score=137.99  Aligned_cols=119  Identities=15%  Similarity=0.133  Sum_probs=77.7

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-------------------------------cCCCCeeeeccceeecCCC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP  318 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~  318 (421)
                      +...+|+++|.+|+|||||+++|+.....+                               ...+++|.+.....+... 
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence            455799999999999999999997652211                               112344444444444332 


Q ss_pred             CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh------hhHHHHHHHHHhcCCCCCC
Q 014655          319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLE  392 (421)
Q Consensus       319 ~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~  392 (421)
                             ...+.||||||+.+       +.......+..||++|+|+|++++...      .+.......+...    ..
T Consensus       110 -------~~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~----~~  171 (483)
T 3p26_A          110 -------RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GI  171 (483)
T ss_dssp             -------SCEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT----TC
T ss_pred             -------CceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc----CC
Confidence                   24799999999854       345567778999999999999875321      2223333333332    12


Q ss_pred             CCEEEEEeCCCCCCC
Q 014655          393 RPFIVVLNKIDLPEM  407 (421)
Q Consensus       393 kP~IIVlNK~Dl~~~  407 (421)
                      +|+|+|+||+|+.+.
T Consensus       172 ~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          172 HNLIIAMNKMDNVDW  186 (483)
T ss_dssp             CCEEEEEECGGGGTT
T ss_pred             CcEEEEEECcCcccc
Confidence            579999999999863

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.35  E-value=6.3e-13  Score=119.35  Aligned_cols=123  Identities=18%  Similarity=0.177  Sum_probs=71.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC-CCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|+|+|.+|||||||+++|++.. +....+..|+ .+.....+.....   ......+.+|||||..+...    +.. 
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~----~~~-   74 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDK---RKRDLVLNVWDFAGREEFYS----THP-   74 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC------------CEEEEEEECSHHHHHT----TSH-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccC---CCCceEEEEEecCCCHHHHH----hhH-
Confidence            489999999999999999999863 2222222221 1111111111000   00124689999999765321    222 


Q ss_pred             HHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                        .++..++++++|+|++++. ..+.+..+..++....   .+.|+++|+||+|+.+..
T Consensus        75 --~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~  128 (184)
T 2zej_A           75 --HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEK  128 (184)
T ss_dssp             --HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHH
T ss_pred             --HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccch
Confidence              2345689999999998752 3444555555554432   368999999999997643

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.35  E-value=1.4e-13  Score=145.56  Aligned_cols=116  Identities=18%  Similarity=0.184  Sum_probs=85.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .++|+++|.+|+|||||+++|++.+......+++|.+.....+....       +..++||||||+.+....       .
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-------g~~i~~iDTPGhe~f~~~-------~   69 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-------GEKITFLDTPGHAAFSAM-------R   69 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-------SSCCBCEECSSSCCTTTS-------B
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-------CCEEEEEECCChHHHHHH-------H
Confidence            46899999999999999999998765556677888776665554321       246899999997553221       1


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+.+..+|++++|+|+++....+..+.+ ..+..     .+.|+++|+||+|+.+.
T Consensus        70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~-----~~vPiIVViNKiDl~~~  119 (537)
T 3izy_P           70 ARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD-----AHVPIVLAINKCDKAEA  119 (537)
T ss_dssp             BSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT-----TTCCEEECCBSGGGTTT
T ss_pred             HHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCcEEEEEeccccccc
Confidence            2446779999999999987666555433 34443     46899999999999754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.34  E-value=1.8e-12  Score=129.67  Aligned_cols=133  Identities=21%  Similarity=0.214  Sum_probs=73.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-----c-cCCCC----------------------eeeecc-------------
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-----I-ADYPF----------------------TTLMPN-------------  310 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-----i-a~~pf----------------------TTl~p~-------------  310 (421)
                      .++|++||.||||||||+|+|++.+..     + ...|.                      ||.+..             
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            478999999999999999999987643     1 22333                      222100             


Q ss_pred             --ceeecCCCCCC-ccccccceEEecCCcccccccc--cC----chhHHHHHhcc-cCCEEEEEeeCCCCCChhhHHHHH
Q 014655          311 --LGRLDGDPTLG-AEKYSSEATLADLPGLIEGAHL--GK----GLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRTVK  380 (421)
Q Consensus       311 --~g~v~~~~~~~-~~~~~~~i~iiDtPGlie~a~~--~~----gl~~~fL~~i~-radvIl~VvD~s~~~~~~~~~~l~  380 (421)
                        .+.......+. .......++||||||+.+.+..  ..    .+......++. .++++++|+|++......+..   
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~---  187 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL---  187 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH---
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH---
Confidence              00000000000 0000246999999999764321  11    12222334443 456777778876532222222   


Q ss_pred             HHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          381 EELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       381 ~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..++.+.+  .+.|+++|+||+|+.+..+
T Consensus       188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~~~  214 (353)
T 2x2e_A          188 KVAKEVDP--QGQRTIGVITKLDLMDEGT  214 (353)
T ss_dssp             HHHHHHCT--TCTTEEEEEECGGGSCTTC
T ss_pred             HHHHHhCc--CCCceEEEeccccccCcch
Confidence            23333332  4689999999999986544

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.33  E-value=2.2e-12  Score=131.37  Aligned_cols=115  Identities=23%  Similarity=0.231  Sum_probs=77.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcC---CCC--c-cC-----------CCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA---KPD--I-AD-----------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  334 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~---~~~--i-a~-----------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt  334 (421)
                      ..+|+++|.+|+|||||+++|++.   ...  . ..           ..+.|.+.....+...        ...+.++||
T Consensus        11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~~~iiDt   82 (405)
T 2c78_A           11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--------KRHYSHVDC   82 (405)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--------SCEEEEEEC
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC--------CeEEEEEEC
Confidence            368999999999999999999873   100  0 00           1222333222222211        247999999


Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEM  407 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~  407 (421)
                      ||+.+.       .......+..+|++|+|+|+++....+. ..++..+..     .+.| +++|+||+|+...
T Consensus        83 pG~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~-----~~ip~iivviNK~Dl~~~  143 (405)
T 2c78_A           83 PGHADY-------IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-----VGVPYIVVFMNKVDMVDD  143 (405)
T ss_dssp             CCSGGG-------HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH-----TTCCCEEEEEECGGGCCC
T ss_pred             CChHHH-------HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCEEEEEEECccccCc
Confidence            998653       3445667789999999999988665444 344455554     3577 8899999999853

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.33  E-value=3.1e-12  Score=130.09  Aligned_cols=114  Identities=20%  Similarity=0.156  Sum_probs=77.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  336 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG  336 (421)
                      .+|+++|.+|+|||||+++|++.....                ....+.|.+.....+...        ...+.++||||
T Consensus         4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------~~~~~iiDtpG   75 (397)
T 1d2e_A            4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--------ARHYAHTDCPG   75 (397)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------SCEEEEEECSS
T ss_pred             EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------CeEEEEEECCC
Confidence            589999999999999999998741100                002234444332222221        24799999999


Q ss_pred             ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCC
Q 014655          337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEM  407 (421)
Q Consensus       337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~  407 (421)
                      +.+.       .......+..+|++|+|+|+++....+..+.+ ..+..     .+.| +++|+||+|+...
T Consensus        76 ~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~~  134 (397)
T 1d2e_A           76 HADY-------VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQD  134 (397)
T ss_dssp             HHHH-------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCSC
T ss_pred             hHHH-------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCCC
Confidence            8653       23445667889999999999987655544433 44544     3577 6899999999853

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.32  E-value=2.2e-12  Score=116.98  Aligned_cols=123  Identities=21%  Similarity=0.164  Sum_probs=82.7

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ....+|+|+|.+|||||||+++|++........+..+.+...+.+..+.      ....+.++||||+.+.    ..+..
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g------~~~~~~i~Dt~g~~~~----~~~~~   96 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG------KTIKAQIWDTAGLERY----RAITS   96 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETT------EEEEEEEEEECSCCSS----SCCCH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC------EEEEEEEEECCCCcch----hhhhH
Confidence            3457899999999999999999998775544444444455555554331      1224678999997543    22222


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                         ..++.++++++|+|+++....+....+..++.....  ...|+++|+||+|+.+.
T Consensus        97 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~  149 (191)
T 1oix_A           97 ---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHL  149 (191)
T ss_dssp             ---HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred             ---HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc
Confidence               335678999999999875544554445555554322  35789999999999753

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.32  E-value=4.7e-12  Score=130.24  Aligned_cols=118  Identities=21%  Similarity=0.198  Sum_probs=74.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-----------cCCCCeee----------------------eccceeecC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------ADYPFTTL----------------------MPNLGRLDG  316 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-----------a~~pfTTl----------------------~p~~g~v~~  316 (421)
                      +...+|+++|.+|+|||||+++|+.....+           +.++.||.                      +.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            345689999999999999999998764322           11233321                      111111111


Q ss_pred             CCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655          317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI  396 (421)
Q Consensus       317 ~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I  396 (421)
                      .        ...+.+|||||+.+.       .......+..+|++|+|+|+++....+..+ ++..+....    -+|++
T Consensus       102 ~--------~~~~~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~l~~~~~~~----~~~iI  161 (434)
T 1zun_B          102 A--------KRKFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYGVQTQTRR-HSYIASLLG----IKHIV  161 (434)
T ss_dssp             S--------SEEEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTCSCHHHHH-HHHHHHHTT----CCEEE
T ss_pred             C--------CceEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHcC----CCeEE
Confidence            1        246999999997543       344556788999999999999865444333 333444321    24689


Q ss_pred             EEEeCCCCCCC
Q 014655          397 VVLNKIDLPEM  407 (421)
Q Consensus       397 IVlNK~Dl~~~  407 (421)
                      +|+||+|+.+.
T Consensus       162 vviNK~Dl~~~  172 (434)
T 1zun_B          162 VAINKMDLNGF  172 (434)
T ss_dssp             EEEECTTTTTS
T ss_pred             EEEEcCcCCcc
Confidence            99999999864

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.32  E-value=3.6e-12  Score=139.55  Aligned_cols=135  Identities=20%  Similarity=0.215  Sum_probs=81.5

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCC--------------------------------
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDP--------------------------------  318 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~--------------------------------  318 (421)
                      .+++|++||.+|||||||+|+|++..........+|..|..-.+...+                                
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            457999999999999999999999764322222334322111110000                                


Q ss_pred             ----CCCc--------cccccceEEecCCccccccc--ccC----chhHHHHHhc-ccCCEEEEEeeCCCCCChhhHHHH
Q 014655          319 ----TLGA--------EKYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHL-RRTRLLVHVIDAAAENPVNDYRTV  379 (421)
Q Consensus       319 ----~~~~--------~~~~~~i~iiDtPGlie~a~--~~~----gl~~~fL~~i-~radvIl~VvD~s~~~~~~~~~~l  379 (421)
                          .+..        .....+++|+||||+...+.  +..    .+.....+++ +.+|++++|+|++......+...+
T Consensus       130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                0000        00013589999999987431  111    1222222333 578999999999876544554345


Q ss_pred             HHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          380 KEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       380 ~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      ..++..     .++|+|+|+||+|+......
T Consensus       210 l~~L~~-----~g~pvIlVlNKiDlv~~~~~  235 (772)
T 3zvr_A          210 AKEVDP-----QGQRTIGVITKLDLMDEGTD  235 (772)
T ss_dssp             HHHHCT-----TCSSEEEEEECTTSSCTTCC
T ss_pred             HHHHHh-----cCCCEEEEEeCcccCCcchh
Confidence            555543     46899999999999876543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.30  E-value=1.3e-12  Score=137.23  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=80.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+.|+++|.+++|||||+++|.+........+++|.+.....+...        +..++||||||+.+....       .
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--------~~~i~~iDTPGhe~f~~~-------~   68 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--------NGMITFLDTPGHAAFTSM-------R   68 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--------SSCCCEECCCTTTCCTTS-------B
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--------CEEEEEEECCCcHHHHHH-------H
Confidence            4689999999999999999998755433344555655443333322        247899999998654221       1


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .+.+..||++++|+|+++....+..+.+. .+..     .+.|+++|+||+|+...
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~-~~~~-----~~vPiIVviNKiDl~~~  118 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQ-HAKA-----AQVPVVVAVNKIDKPEA  118 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHH-HHHH-----TTCCEEEEEECSSSSTT
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHH-HHHh-----cCceEEEEEEecccccc
Confidence            24467899999999998865545544443 3333     46899999999999753

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.30  E-value=8.4e-12  Score=131.88  Aligned_cols=120  Identities=21%  Similarity=0.231  Sum_probs=78.5

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCCCcc----------------C------CCCeeeeccceeecCCCCCCcccc
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIA----------------D------YPFTTLMPNLGRLDGDPTLGAEKY  325 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia----------------~------~pfTTl~p~~g~v~~~~~~~~~~~  325 (421)
                      +.+...+|+++|.+|||||||+++|+.....+.                +      ..+.|.......+.+.        
T Consensus         9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------   80 (529)
T 2h5e_A            9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--------   80 (529)
T ss_dssp             HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--------
T ss_pred             hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--------
Confidence            345668999999999999999999986432220                0      1111211111122211        


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ...+.++||||+.+.       .....+.+..+|++|+|+|+++..... ...++..+..     .+.|+++|+||+|+.
T Consensus        81 ~~~i~liDTPG~~df-------~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~-----~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           81 DCLVNLLDTPGHEDF-------SEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRL-----RDTPILTFMNKLDRD  147 (529)
T ss_dssp             TEEEEEECCCCSTTC-------CHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTT-----TTCCEEEEEECTTSC
T ss_pred             CeEEEEEECCCChhH-------HHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHH-----cCCCEEEEEcCcCCc
Confidence            347999999998653       234567789999999999998765433 3344444433     468999999999998


Q ss_pred             CCC
Q 014655          406 EMY  408 (421)
Q Consensus       406 ~~~  408 (421)
                      ...
T Consensus       148 ~~~  150 (529)
T 2h5e_A          148 IRD  150 (529)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.30  E-value=6.6e-12  Score=128.05  Aligned_cols=125  Identities=20%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecC-----------CCCCC--cccc--ccceEEec
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLAD  333 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~-----------~~~~~--~~~~--~~~i~iiD  333 (421)
                      ..+|+++|.+++|||||+++|++.....   ...++.|.+........           ....+  ...+  ...+.+||
T Consensus         8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   87 (408)
T 1s0u_A            8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD   87 (408)
T ss_dssp             CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence            3689999999999999999999654321   11233444332111100           00000  0000  14799999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      |||+.+.       ...+++.+..+|++|+|+|++++. ..+..+.+ ..++.+.    .+|+++|+||+|+.+.+
T Consensus        88 tPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~l~----~~~iivv~NK~Dl~~~~  151 (408)
T 1s0u_A           88 SPGHETL-------MATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MALEILG----IDKIIIVQNKIDLVDEK  151 (408)
T ss_dssp             CSSHHHH-------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHHHHTT----CCCEEEEEECTTSSCTT
T ss_pred             CCCHHHH-------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHHHHcC----CCeEEEEEEccCCCCHH
Confidence            9997542       344566677889999999999765 33333333 3444332    25899999999998754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.29  E-value=4.2e-12  Score=138.18  Aligned_cols=117  Identities=21%  Similarity=0.173  Sum_probs=79.0

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCC------------ccC------CCCeeeeccceeecCCCCCCccccccceEEe
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPD------------IAD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA  332 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~------------ia~------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~ii  332 (421)
                      .+.+|+|+|.+|+|||||+++|+.....            +.+      .+.+|+......+...        +..+.+|
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--------~~~i~li   80 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--------GHRVNII   80 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--------TEEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--------CeeEEEE
Confidence            4568999999999999999999842111            111      1334444443333322        3479999


Q ss_pred             cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ||||+.+.       .....+.++.+|++|+|+|+++.....+.. ++..+..     .+.|+++|+||+|+...+
T Consensus        81 DTPG~~df-------~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~-----~~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           81 DTPGHVDF-------TVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT-----YGVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             CCCCCSSC-------CHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH-----TTCCEEEEEECTTSTTCC
T ss_pred             ECcCCcch-------HHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH-----cCCCEEEEEECCCccccc
Confidence            99998764       234567778899999999999876665554 4444554     368999999999998653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.29  E-value=3.4e-12  Score=130.14  Aligned_cols=125  Identities=20%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecC-----------CCCCC--cccc--ccceEEec
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLAD  333 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~-----------~~~~~--~~~~--~~~i~iiD  333 (421)
                      ..+|+++|.+++|||||+++|++.....   ...++.|.+........           ....+  ...+  ...+.++|
T Consensus        10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   89 (410)
T 1kk1_A           10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   89 (410)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence            4689999999999999999999654321   11234444332211110           00000  0000  14799999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      |||+.+.       ...+++.+..+|++|+|+|+++.. ..+..+.+ ..+..+.    .+|+++|+||+|+.+.+
T Consensus        90 tPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~~----~~~iivviNK~Dl~~~~  153 (410)
T 1kk1_A           90 APGHEAL-------MTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQIIG----QKNIIIAQNKIELVDKE  153 (410)
T ss_dssp             CSSHHHH-------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHHT----CCCEEEEEECGGGSCHH
T ss_pred             CCChHHH-------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHcC----CCcEEEEEECccCCCHH
Confidence            9997542       345567778899999999999765 33333333 3444432    26899999999998754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.28  E-value=7.9e-12  Score=133.85  Aligned_cols=123  Identities=21%  Similarity=0.203  Sum_probs=78.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  334 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt  334 (421)
                      +.+.+|+++|++++|||||+++|+.....+..               ..+.|.......+.+...   ......+.+|||
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~---dg~~~~inliDT   80 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK---DGNTYKLHLIDT   80 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT---TSCEEEEEEECC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC---CCCeEEEEEEEC
Confidence            45679999999999999999999763211110               012222222222211100   001247899999


Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ||+.+.       .....+.+..||++|+|+|+++....+....+...+.      .+.|+++|+||+|+..++
T Consensus        81 PGh~dF-------~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~  141 (600)
T 2ywe_A           81 PGHVDF-------SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD  141 (600)
T ss_dssp             CCSGGG-------HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC
T ss_pred             CCcHhH-------HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC
Confidence            998764       2345566789999999999998776666665554443      368999999999998654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.28  E-value=9.8e-12  Score=135.23  Aligned_cols=118  Identities=17%  Similarity=0.146  Sum_probs=79.0

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCC------c------cC------CCCeeeeccceeecCCCCCCccccccceEE
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPD------I------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL  331 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~------i------a~------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i  331 (421)
                      ....+|+|+|.+|+|||||+++|+.....      +      .+      ....|+......+...        ...+.+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--------~~~i~l   81 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--------DHRINI   81 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--------TEEEEE
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--------CeEEEE
Confidence            45578999999999999999999842111      1      11      1233333333333221        347999


Q ss_pred             ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      |||||+.+.       .....+.+..+|++|+|+|+++....+....| ..+..     .+.|+++|+||+|+...+
T Consensus        82 iDTPG~~df-------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           82 IDTPGHVDF-------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK-----YKVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             ECCCSSTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCEEEEEECTTSTTCC
T ss_pred             EECcCccch-------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH-----cCCCEEEEEECCCcccCC
Confidence            999998653       33456778889999999999987766665544 44444     368999999999998654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.27  E-value=2.1e-13  Score=137.82  Aligned_cols=120  Identities=23%  Similarity=0.201  Sum_probs=86.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcC------CCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  345 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~------~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~  345 (421)
                      ..+|+++|.||+|||||+|+|++.      ...++++|+||.+.....+.           ..+.++||||+.+......
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~~  230 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-----------SGATLYDTPGIINHHQMAH  230 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-----------TTCEEEECCSCCCCSSGGG
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-----------CCeEEEeCCCcCcHHHHHH
Confidence            457999999999999999999987      45568899999887665432           3589999999987654445


Q ss_pred             chhHHHHHhc---ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          346 GLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       346 gl~~~fL~~i---~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+...++.++   .+.|.++|++|+........+.. .+.|.     ..+.|+++|+||+|.....
T Consensus       231 ~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~-----~~~~~~~~v~~k~d~~~~~  290 (369)
T 3ec1_A          231 FVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK-----GGRRSFVCYMANELTVHRT  290 (369)
T ss_dssp             GSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE-----SSSEEEEEEECTTSCEEEE
T ss_pred             HHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc-----CCCceEEEEecCCcccccc
Confidence            5666677777   78999999999853211111110 01111     1357899999999987544

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.27  E-value=4.4e-12  Score=130.52  Aligned_cols=117  Identities=21%  Similarity=0.190  Sum_probs=72.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTL  320 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~  320 (421)
                      ..+|+++|.+|+|||||+++|+.....+.                               ...++|.+.....+...   
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~---   82 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK---   82 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS---
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC---
Confidence            46899999999999999999986411110                               02345555444444332   


Q ss_pred             CccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC------ChhhHHHHHHHHHhcCCCCCCCC
Q 014655          321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERP  394 (421)
Q Consensus       321 ~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~kP  394 (421)
                           ...+.+|||||+.+.       .......+..+|++|+|+|+++..      ...+.+..+..+..+.    -.|
T Consensus        83 -----~~~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~----~~~  146 (435)
T 1jny_A           83 -----KYFFTIIDAPGHRDF-------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG----LDQ  146 (435)
T ss_dssp             -----SCEEEECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT----CTT
T ss_pred             -----CeEEEEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcC----CCe
Confidence                 347999999998653       344567789999999999998731      1123333333334321    246


Q ss_pred             EEEEEeCCCCCCC
Q 014655          395 FIVVLNKIDLPEM  407 (421)
Q Consensus       395 ~IIVlNK~Dl~~~  407 (421)
                      +++|+||+|+.+.
T Consensus       147 iivviNK~Dl~~~  159 (435)
T 1jny_A          147 LIVAVNKMDLTEP  159 (435)
T ss_dssp             CEEEEECGGGSSS
T ss_pred             EEEEEEcccCCCc
Confidence            8999999999873

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.26  E-value=1e-11  Score=132.98  Aligned_cols=122  Identities=21%  Similarity=0.248  Sum_probs=75.4

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  335 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP  335 (421)
                      .+.+|+++|.+++|||||+++|+.....+..               ..+.|.......+.+...   ......+.+||||
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~---~g~~~~l~liDTP   79 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS---DGETYQLNFIDTP   79 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT---TSCEEEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC---CCCeEEEEEEECC
Confidence            4578999999999999999999864322211               112233222222221100   0012478999999


Q ss_pred             cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      |+.+.       .....+.+..||++|+|+|+++....+....|...+.      .+.|+++|+||+|+..+.
T Consensus        80 Gh~dF-------~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~  139 (599)
T 3cb4_D           80 GHVDF-------SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAAD  139 (599)
T ss_dssp             CCGGG-------HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCC
T ss_pred             CchHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCccccc
Confidence            98664       3345567788999999999998877666666555543      368999999999998754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.25  E-value=6.3e-12  Score=127.12  Aligned_cols=101  Identities=15%  Similarity=0.144  Sum_probs=72.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+++|.+|+|||||+++|+        ....|.+.....+...        ...+.+|||||+.+.       ......
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~--------~~~i~iiDtPGh~~f-------~~~~~~   79 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE--------GRNMVFVDAHSYPKT-------LKSLIT   79 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS--------SSEEEEEECTTTTTC-------HHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC--------CeEEEEEECCChHHH-------HHHHHH
Confidence            89999999999999999998        2244555444444332        246999999998653       334556


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCE-EEEEe-CCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN-KIDL  404 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~-IIVlN-K~Dl  404 (421)
                      .+..+|++++|+| .... ..+.+.++..+..     .+.|. ++|+| |+|+
T Consensus        80 ~~~~aD~ailVvd-~~g~-~~qt~e~~~~~~~-----~~i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           80 ALNISDIAVLCIP-PQGL-DAHTGECIIALDL-----LGFKHGIIALTRSDST  125 (370)
T ss_dssp             HHHTCSEEEEEEC-TTCC-CHHHHHHHHHHHH-----TTCCEEEEEECCGGGS
T ss_pred             HHHHCCEEEEEEc-CCCC-cHHHHHHHHHHHH-----cCCCeEEEEEEeccCC
Confidence            6789999999999 5443 3344445555554     35677 99999 9999

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.25  E-value=4.1e-12  Score=131.81  Aligned_cols=114  Identities=20%  Similarity=0.192  Sum_probs=73.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCcc-------------------------C------CCCeeeeccceeecCCCCCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------D------YPFTTLMPNLGRLDGDPTLG  321 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------~------~pfTTl~p~~g~v~~~~~~~  321 (421)
                      .+|+++|.+|+|||||+++|+.....+.                         +      ..+.|.+.....+...    
T Consensus         8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~----   83 (458)
T 1f60_A            8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP----   83 (458)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS----
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC----
Confidence            5899999999999999999986411110                         0      1234444443333322    


Q ss_pred             ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh------hhHHHHHHHHHhcCCCCCCCC-
Q 014655          322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLERP-  394 (421)
Q Consensus       322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~kP-  394 (421)
                          ...++||||||+.+       +.......+..+|++|+|||+++....      .+....+..+..     .+.| 
T Consensus        84 ----~~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-----~~v~~  147 (458)
T 1f60_A           84 ----KYQVTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-----LGVRQ  147 (458)
T ss_dssp             ----SEEEEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-----TTCCE
T ss_pred             ----CceEEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-----cCCCe
Confidence                24799999999753       344456778899999999999864211      022222233333     3455 


Q ss_pred             EEEEEeCCCCCC
Q 014655          395 FIVVLNKIDLPE  406 (421)
Q Consensus       395 ~IIVlNK~Dl~~  406 (421)
                      +|+|+||+|+.+
T Consensus       148 iivviNK~Dl~~  159 (458)
T 1f60_A          148 LIVAVNKMDSVK  159 (458)
T ss_dssp             EEEEEECGGGGT
T ss_pred             EEEEEEcccccc
Confidence            899999999984

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.24  E-value=1e-11  Score=129.03  Aligned_cols=117  Identities=23%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-------------------------cC------CCCeeeeccceeecCCC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------AD------YPFTTLMPNLGRLDGDP  318 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-------------------------a~------~pfTTl~p~~g~v~~~~  318 (421)
                      +...+|+++|.+|+|||||+++|+.....+                         .+      ..+.|++.....+... 
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence            455789999999999999999997422111                         00      1233444333333322 


Q ss_pred             CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC------hhhHHHHHHHHHhcCCCCCC
Q 014655          319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP------VNDYRTVKEELRMYNPDYLE  392 (421)
Q Consensus       319 ~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~------~~~~~~l~~eL~~~~~~l~~  392 (421)
                             ...+.||||||+.+.       .......+..+|++|+|||+++...      ..+....+..+..     .+
T Consensus       120 -------~~~~~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-----~~  180 (467)
T 1r5b_A          120 -------HRRFSLLDAPGHKGY-------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-----QG  180 (467)
T ss_dssp             -------SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-----TT
T ss_pred             -------CeEEEEEECCCcHHH-------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-----cC
Confidence                   247999999998653       2234556788999999999987521      0122223333333     35


Q ss_pred             CC-EEEEEeCCCCCC
Q 014655          393 RP-FIVVLNKIDLPE  406 (421)
Q Consensus       393 kP-~IIVlNK~Dl~~  406 (421)
                      .| +|+|+||+|+..
T Consensus       181 vp~iivviNK~Dl~~  195 (467)
T 1r5b_A          181 INHLVVVINKMDEPS  195 (467)
T ss_dssp             CSSEEEEEECTTSTT
T ss_pred             CCEEEEEEECccCCC
Confidence            66 999999999965

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.24  E-value=7.8e-12  Score=113.76  Aligned_cols=123  Identities=23%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCC--CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK  345 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~--~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~  345 (421)
                      .+.....|+|+|.+|||||||+|+|++...  .+.+.+++|....  .+..         ...+.++||||+........
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~---------~~~~~l~Dt~G~~~~~~~~~   90 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV---------ADGKRLVDLPGYGYAEVPEE   90 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE---------ETTEEEEECCCCC------C
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe---------cCCEEEEECcCCcccccCHH
Confidence            344556899999999999999999998762  2245556655322  2211         12578999999864211000


Q ss_pred             ------chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          346 ------GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       346 ------gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                            .....++++...++.+++|+|++......+ ..+..++..     ...|+++|.||+|+...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~-----~~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A           91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD-----SNIAVLVLLTKADKLAS  152 (210)
T ss_dssp             CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH-----TTCCEEEEEECGGGSCH
T ss_pred             HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH-HHHHHHHHH-----cCCCeEEEEecccCCCc
Confidence                  011223344467899999999987654433 234445544     45889999999998764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.23  E-value=6.8e-12  Score=119.76  Aligned_cols=135  Identities=16%  Similarity=0.087  Sum_probs=76.5

Q ss_pred             hceecccCCC---------CCChhHHHHHHhcCC--CCccCCCCee--eeccceeecCCCC--------CCccccccceE
Q 014655          272 VADVGLVGLP---------NAGKSTLLAAITHAK--PDIADYPFTT--LMPNLGRLDGDPT--------LGAEKYSSEAT  330 (421)
Q Consensus       272 i~~V~LVG~p---------NaGKSSLLnaLt~~~--~~ia~~pfTT--l~p~~g~v~~~~~--------~~~~~~~~~i~  330 (421)
                      ..+|+|||.+         |||||||+++|++..  ..+.++..||  .+.....+.....        ...+.....+.
T Consensus        19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~   98 (255)
T 3c5h_A           19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMH   98 (255)
T ss_dssp             CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEE
T ss_pred             eeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEE
Confidence            3689999999         999999999999852  2334455554  2222222211000        00001124678


Q ss_pred             Eec------CCccccccc--------------------------ccCchhHHHHHhcc-----cCCEEEEEeeCCCC--C
Q 014655          331 LAD------LPGLIEGAH--------------------------LGKGLGRNFLRHLR-----RTRLLVHVIDAAAE--N  371 (421)
Q Consensus       331 iiD------tPGlie~a~--------------------------~~~gl~~~fL~~i~-----radvIl~VvD~s~~--~  371 (421)
                      |||      |||......                          +..++...|.++..     .||++|+|+|++++  .
T Consensus        99 i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~  178 (255)
T 3c5h_A           99 IVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNR  178 (255)
T ss_dssp             EEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----
T ss_pred             EEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchh
Confidence            887      555432211                          01112222222222     69999999999987  7


Q ss_pred             ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          372 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       372 ~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      +.+.+..+..++..+.. ..+.|+++|+||+|+...
T Consensus       179 s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~  213 (255)
T 3c5h_A          179 NFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVE  213 (255)
T ss_dssp             CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCH
T ss_pred             hHHHHHHHHHHHHHHhc-cCCCCEEEEEEccccccc
Confidence            77777766666654310 135899999999999653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.22  E-value=6.8e-13  Score=141.96  Aligned_cols=116  Identities=23%  Similarity=0.271  Sum_probs=59.7

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-------------------------------cCCCCeeeeccceeecCCC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP  318 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~  318 (421)
                      +...+|+++|.+|+|||||+++|+.....+                               ...+++|.+.....+... 
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence            455789999999999999999996431111                               013355555554444332 


Q ss_pred             CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-------ChhhHHHHHHHHHhcCCCCC
Q 014655          319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYL  391 (421)
Q Consensus       319 ~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-------~~~~~~~l~~eL~~~~~~l~  391 (421)
                             ...++||||||+.+...       .....+..||++|+|||++.+.       ..+. ......+..     .
T Consensus       254 -------~~~i~iiDTPGh~~f~~-------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt-~e~l~~~~~-----l  313 (592)
T 3mca_A          254 -------KKIYEIGDAPGHRDFIS-------GMIAGASSADFAVLVVDSSQNNFERGFLENGQT-REHAYLLRA-----L  313 (592)
T ss_dssp             ------------CCEEESSSEEEE-------ECCC-------CCSEEEEEECCSSTTSCSCSSH-HHHHHHHHH-----S
T ss_pred             -------CeEEEEEECCChHHHHH-------HHHHHHhhCCEEEEEEECCCCccccccccchHH-HHHHHHHHH-----c
Confidence                   24789999999875421       1234457799999999998642       2222 233334444     3


Q ss_pred             CCC-EEEEEeCCCCCC
Q 014655          392 ERP-FIVVLNKIDLPE  406 (421)
Q Consensus       392 ~kP-~IIVlNK~Dl~~  406 (421)
                      +.| +|+|+||+|+..
T Consensus       314 gip~iIvviNKiDl~~  329 (592)
T 3mca_A          314 GISEIVVSVNKLDLMS  329 (592)
T ss_dssp             SCCCEEEEEECGGGGT
T ss_pred             CCCeEEEEEecccccc
Confidence            455 899999999976

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.20  E-value=2.9e-11  Score=120.67  Aligned_cols=118  Identities=22%  Similarity=0.243  Sum_probs=75.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      +|.++|..+||||||++.+.+..... .....+|.......+.         ...++.||||||..+...  ..+  ...
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~---------~~v~LqIWDTAGQErf~~--~~l--~~~   67 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS---------TLIDLAVMELPGQLNYFE--PSY--DSE   67 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC---------SSSCEEEEECCSCSSSCC--CSH--HHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc---------cEEEEEEEECCCchhccc--hhh--hhh
Confidence            58899999999999999887643211 1112233333333321         124799999999865410  001  112


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHH---HhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL---RMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL---~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+.+.|+++++|+|+++. ..+....|.+++   ....   .+.|+++|+||+|+...+
T Consensus        68 ~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~---~~ipillvgNK~DL~~~~  122 (331)
T 3r7w_B           68 RLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVN---PSINIEVLIHKVDGLSED  122 (331)
T ss_dssp             HHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHC---TTCEEEEECCCCCSSCSH
T ss_pred             hhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcC---CCCcEEEEEECcccCchh
Confidence            446789999999999986 444444443333   3333   368999999999998654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.18  E-value=1.2e-12  Score=132.39  Aligned_cols=121  Identities=21%  Similarity=0.226  Sum_probs=80.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcC-------CCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA-------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  344 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~-------~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~  344 (421)
                      ..+|+++|.||+|||||+|+|++.       ...++++|+||.+.....+.           ..+.++||||+.+.....
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~  228 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-----------EESSLYDTPGIINHHQMA  228 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-----------SSCEEEECCCBCCTTSGG
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-----------CCeEEEeCCCcCcHHHHH
Confidence            358999999999999999999986       23358899999887665432           248999999998765444


Q ss_pred             CchhHHHHHh---cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          345 KGLGRNFLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       345 ~gl~~~fL~~---i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..+....+.+   ..+.+.++|++|+........+.. .+.|..     .+.|+++|+||+|.....+
T Consensus       229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~-----~~~~~~~v~nk~d~~~~~~  290 (368)
T 3h2y_A          229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG-----GRRAFTCHFSNRLTIHRTK  290 (368)
T ss_dssp             GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES-----SSEEEEEEECTTSCEEEEE
T ss_pred             HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEecC-----CCceEEEEecCcccccccc
Confidence            4455566665   467899999999843211111110 011111     3579999999999876543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.16  E-value=9.8e-11  Score=127.64  Aligned_cols=125  Identities=18%  Similarity=0.084  Sum_probs=78.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCC------c------cC------CCCeeeeccceeecCCCCCCccccccceEE
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPD------I------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL  331 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~------i------a~------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i  331 (421)
                      ..+.+|+|+|.+|+|||||+++|+.....      +      .+      ....|.......+...... ...-...+.|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~i~l   86 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA-KQYEPHRINI   86 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc-ccCCceeEEE
Confidence            34578999999999999999999653211      1      11      1122333222222221100 0011257999


Q ss_pred             ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      |||||+.+.       .....+.+..||++|+|+|+++....+... ++..+..     .+.|+++|+||+|+...+
T Consensus        87 iDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~-----~~ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           87 IDTPGHVDF-------TIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK-----YKVPRIAFVNKMDRMGAN  150 (704)
T ss_pred             EeCCCccch-------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH-----cCCCEEEEEeCCCccccc
Confidence            999998763       223456678899999999999875544433 4444443     368999999999997653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.13  E-value=5.4e-11  Score=127.34  Aligned_cols=121  Identities=22%  Similarity=0.186  Sum_probs=73.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecC-------CCCCCc---cccccceEEecCCccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG-------DPTLGA---EKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~-------~~~~~~---~~~~~~i~iiDtPGlie~a~  342 (421)
                      +.|+++|++|+|||||+++|++...........|.+.....+..       ......   ......++||||||+.+...
T Consensus         6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~   85 (594)
T 1g7s_A            6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (594)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHH
Confidence            68999999999999999999875321100001111110000000       000000   00012589999999866532


Q ss_pred             ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      +.       .+.+..||++|+|+|+++....+.++.+ ..+..     .+.|+++|+||+|+..
T Consensus        86 ~~-------~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~~-----~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           86 LR-------KRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             SB-------CSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHH-----TTCCEEEEEECGGGST
T ss_pred             HH-------HHHHhhCCEEEEEEECCCCccHhHHHHH-HHHHH-----cCCeEEEEeccccccc
Confidence            21       1346779999999999987655555544 34544     4689999999999975

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.13  E-value=1.2e-10  Score=131.71  Aligned_cols=117  Identities=23%  Similarity=0.183  Sum_probs=75.3

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCC-----C-----c------cCCCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKP-----D-----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL  334 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~-----~-----i------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt  334 (421)
                      ...+|+++|.+|+|||||+++|++...     .     .      ....+.|.+.....+...        ...++||||
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------~~kI~IIDT  366 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------TRHYAHVDC  366 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS--------SCEEEEEEC
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC--------CEEEEEEEC
Confidence            346899999999999999999987410     0     0      011223333222222211        247999999


Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMY  408 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~  408 (421)
                      ||+.+.       .......+..+|++|+|||+++....+..+ ++..+..     .+.| +|+|+||+|+...+
T Consensus       367 PGHedF-------~~~mi~gas~AD~aILVVDAtdGv~~QTrE-hL~ll~~-----lgIP~IIVVINKiDLv~d~  428 (1289)
T 3avx_A          367 PGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLGRQ-----VGVPYIIVFLNKCDMVDDE  428 (1289)
T ss_dssp             CCHHHH-------HHHHHHTSCCCSEEEEEEETTTCSCTTHHH-HHHHHHH-----HTCSCEEEEEECCTTCCCH
T ss_pred             CChHHH-------HHHHHHHHhhCCEEEEEEcCCccCcHHHHH-HHHHHHH-----cCCCeEEEEEeecccccch
Confidence            998653       334456678899999999999865444433 3344444     2577 78999999998643

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.13  E-value=2.3e-10  Score=121.41  Aligned_cols=123  Identities=22%  Similarity=0.250  Sum_probs=84.4

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcCCCC----------------ccCC------CCeeeeccceeecCCCCCCc
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHAKPD----------------IADY------PFTTLMPNLGRLDGDPTLGA  322 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~----------------ia~~------pfTTl~p~~g~v~~~~~~~~  322 (421)
                      ++-+...+.+|+|||+..+|||||.-+|.-..-.                +.++      -+.|+......+.+      
T Consensus        24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~------   97 (548)
T 3vqt_A           24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY------   97 (548)
T ss_dssp             HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE------
T ss_pred             hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE------
Confidence            4456778889999999999999999998522111                1111      12222222222322      


Q ss_pred             cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655          323 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  402 (421)
Q Consensus       323 ~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~  402 (421)
                        -+..|.|+||||+.+..       ....+.++-+|..|+|||+......+. +.+++.+..+     +.|.++++||+
T Consensus        98 --~~~~iNlIDTPGHvDF~-------~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~-----~lp~i~fINK~  162 (548)
T 3vqt_A           98 --RDRVVNLLDTPGHQDFS-------EDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMR-----ATPVMTFVNKM  162 (548)
T ss_dssp             --TTEEEEEECCCCGGGCS-------HHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHT-----TCCEEEEEECT
T ss_pred             --CCEEEEEEeCCCcHHHH-------HHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHh-----CCceEEEEecc
Confidence              23579999999998863       235577888999999999998765555 4455666663     68999999999


Q ss_pred             CCCCCC
Q 014655          403 DLPEMY  408 (421)
Q Consensus       403 Dl~~~~  408 (421)
                      |...++
T Consensus       163 Dr~~ad  168 (548)
T 3vqt_A          163 DREALH  168 (548)
T ss_dssp             TSCCCC
T ss_pred             cchhcc
Confidence            997764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.12  E-value=6.4e-11  Score=119.22  Aligned_cols=127  Identities=15%  Similarity=0.125  Sum_probs=61.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCC-------CeeeeccceeecCCCCCCccccccceEEecCCcccccccc--
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--  343 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~p-------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--  343 (421)
                      .+|+|||.+|+|||||+|+|.+.......+.       ..|.......+...    .......+++|||||+.+....  
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~----~~~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIE----ERGVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC--------CEEEEEEEEC------------
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEee----cCCcccceEEEEeccccccCccHH
Confidence            5799999999999999999987654332221       12221111111111    0011236899999999543210  


Q ss_pred             -cCchhH-------HHHHhcc----------cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          344 -GKGLGR-------NFLRHLR----------RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       344 -~~gl~~-------~fL~~i~----------radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                       -..+..       .+++...          ++|+++|+||.+.. .......  ..+....   ...|+|+|+||+|+.
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~-~l~~~d~--~~~~~l~---~~~piIlV~NK~Dl~  187 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH---NKVNIVPVIAKADTL  187 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHTC---S-SCEEEEEECCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC-CcchhHH--HHHHHhc---cCCCEEEEEECCCCC
Confidence             122332       3333322          23578888886332 2222221  1222222   468999999999998


Q ss_pred             CCCC
Q 014655          406 EMYD  409 (421)
Q Consensus       406 ~~~e  409 (421)
                      ...+
T Consensus       188 ~~~e  191 (361)
T 2qag_A          188 TLKE  191 (361)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.11  E-value=2e-11  Score=122.37  Aligned_cols=115  Identities=23%  Similarity=0.290  Sum_probs=61.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcC------CCCc-cCCC-------------------------CeeeeccceeecCCCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA------KPDI-ADYP-------------------------FTTLMPNLGRLDGDPT  319 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~------~~~i-a~~p-------------------------fTTl~p~~g~v~~~~~  319 (421)
                      ...|+|+|+||||||||+|+|++.      +..+ +.-|                         +.|..|..+.+.+...
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr  153 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR  153 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence            568999999999999999999862      2222 1111                         1111111111100000


Q ss_pred             CC------ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCC
Q 014655          320 LG------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER  393 (421)
Q Consensus       320 ~~------~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k  393 (421)
                      ..      ....+..+.++||||+...          .....+.+|++++|+|++.++..+   .+..       ...+.
T Consensus       154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~----------~~~l~~~~d~vl~V~d~~~~~~~~---~i~~-------~il~~  213 (349)
T 2www_A          154 TTNEAILLCEGAGYDIILIETVGVGQS----------EFAVADMVDMFVLLLPPAGGDELQ---GIKR-------GIIEM  213 (349)
T ss_dssp             THHHHHHHHHHTTCSEEEEECCCC--C----------HHHHHTTCSEEEEEECCC----------------------CCS
T ss_pred             HHHHHHHhhccCCCCEEEEECCCcchh----------hhhHHhhCCEEEEEEcCCcchhHH---HhHH-------HHHhc
Confidence            00      0001347899999997532          123357899999999998643211   1111       11356


Q ss_pred             CEEEEEeCCCCCC
Q 014655          394 PFIVVLNKIDLPE  406 (421)
Q Consensus       394 P~IIVlNK~Dl~~  406 (421)
                      |.++|+||+|+.+
T Consensus       214 ~~ivVlNK~Dl~~  226 (349)
T 2www_A          214 ADLVAVTKSDGDL  226 (349)
T ss_dssp             CSEEEECCCSGGG
T ss_pred             CCEEEEeeecCCC
Confidence            8899999999864

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.08  E-value=6.5e-11  Score=131.40  Aligned_cols=124  Identities=22%  Similarity=0.174  Sum_probs=78.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCc-cC---------------CCCeeeeccceeecCCCC--------CCcccc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDPT--------LGAEKY  325 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~---------------~pfTTl~p~~g~v~~~~~--------~~~~~~  325 (421)
                      ..+.+|+|+|.+|+|||||+++|+.....+ ..               ....|+......+.+...        .....-
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            345799999999999999999998642221 11               111222222211111100        000001


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ...+.||||||+.+..       ....+.++.+|++|+|+|+++....++...|...+ .     .+.|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~-----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G-----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H-----TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H-----cCCCeEEEEECCCcc
Confidence            3479999999987642       23556778999999999999887766655444433 3     358999999999986


Q ss_pred             C
Q 014655          406 E  406 (421)
Q Consensus       406 ~  406 (421)
                      .
T Consensus       164 ~  164 (842)
T 1n0u_A          164 L  164 (842)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.01  E-value=7.3e-10  Score=120.01  Aligned_cols=116  Identities=24%  Similarity=0.213  Sum_probs=76.9

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCc------------cCC------CCeeeeccceeecCCCCCCccccccceE
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI------------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEAT  330 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i------------a~~------pfTTl~p~~g~v~~~~~~~~~~~~~~i~  330 (421)
                      +....+|+|+|.+++|||||+++|+.....+            .++      ...|.......+...        ...+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------~~~~n   77 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------GHRVF   77 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--------TEEEE
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--------CEEEE
Confidence            3445689999999999999999998533211            000      011222211112111        24689


Q ss_pred             EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ++||||+.+.       .....+.+..+|++++|+|+++...... ..++..+..     .+.|+++|+||+|+.
T Consensus        78 liDTpG~~~f-------~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~-----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           78 LLDAPGYGDF-------VGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER-----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEECCCSGGG-------HHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred             EEeCCCccch-------HHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH-----ccCCEEEEecCCchh
Confidence            9999998653       2345677788999999999887654433 345555554     368999999999997

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.99  E-value=5.2e-10  Score=120.63  Aligned_cols=116  Identities=21%  Similarity=0.270  Sum_probs=78.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCC------Ccc------CCC------CeeeeccceeecCCCCCCccccccceEEec
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKP------DIA------DYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~------~ia------~~p------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      +.+|+|+|+..+|||||..+|.-..-      .+.      ++.      +.|+......+.        +-+..|+|+|
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~--------~~~~~iNlID   73 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ--------WENTKVNIID   73 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB--------CSSCBCCCEE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE--------ECCEEEEEEE
Confidence            46899999999999999999853211      111      100      111111111222        2245799999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      |||+.+.       .....+.++-||..|+|||+......+. +.++..+..+     +.|.++++||+|....+
T Consensus        74 TPGH~DF-------~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~-----~lp~i~~INKmDr~~a~  135 (638)
T 3j25_A           74 TPGHMDF-------LAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM-----GIPTIFFINKIDQNGID  135 (638)
T ss_dssp             CCCSSST-------HHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH-----TCSCEECCEECCSSSCC
T ss_pred             CCCcHHH-------HHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc-----CCCeEEEEeccccccCC
Confidence            9999876       3345677888999999999998765555 4555556554     57889999999987654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.98  E-value=2.3e-10  Score=114.66  Aligned_cols=61  Identities=20%  Similarity=0.131  Sum_probs=42.4

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++|+||||+.+.          ....++.+|++++|+|++..+..+.+          .....+.|.++|+||+|+..
T Consensus       172 ~~~iiiDTpGi~~~----------~~~~~~~aD~vl~V~d~~~~~~~~~l----------~~~~~~~p~ivVlNK~Dl~~  231 (355)
T 3p32_A          172 FDVILIETVGVGQS----------EVAVANMVDTFVLLTLARTGDQLQGI----------KKGVLELADIVVVNKADGEH  231 (355)
T ss_dssp             CCEEEEEECSCSSH----------HHHHHTTCSEEEEEEESSTTCTTTTC----------CTTSGGGCSEEEEECCCGGG
T ss_pred             CCEEEEeCCCCCcH----------HHHHHHhCCEEEEEECCCCCccHHHH----------HHhHhhcCCEEEEECCCCcC
Confidence            57999999997542          22335889999999998764432211          11224579999999999874


Q ss_pred             C
Q 014655          407 M  407 (421)
Q Consensus       407 ~  407 (421)
                      .
T Consensus       232 ~  232 (355)
T 3p32_A          232 H  232 (355)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.91  E-value=4.9e-10  Score=111.71  Aligned_cols=119  Identities=24%  Similarity=0.289  Sum_probs=64.9

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcC------CCCc-cCCCCeeeec--cc--------------eeecCCC---CCCc
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHA------KPDI-ADYPFTTLMP--NL--------------GRLDGDP---TLGA  322 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~------~~~i-a~~pfTTl~p--~~--------------g~v~~~~---~~~~  322 (421)
                      ......|+++|+||||||||+++|+..      +..+ ...+++|...  ..              +.+...+   ....
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g  132 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  132 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence            345568999999999999999999642      2222 2333333210  00              0000000   0000


Q ss_pred             ------------cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCC
Q 014655          323 ------------EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY  390 (421)
Q Consensus       323 ------------~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l  390 (421)
                                  ...+.++.|+||||+.+..          ...+..+|++++|+|++..+..+.   +....       
T Consensus       133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~----------~~~~~~aD~vl~Vvd~~~~~~~~~---l~~~~-------  192 (341)
T 2p67_A          133 ASQRARELMLLCEAAGYDVVIVETVGVGQSE----------TEVARMVDCFISLQIAGGGDDLQG---IKKGL-------  192 (341)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHH----------HHHHTTCSEEEEEECC------CC---CCHHH-------
T ss_pred             hHHHHHHHHHHhhccCCCEEEEeCCCccchH----------HHHHHhCCEEEEEEeCCccHHHHH---HHHhh-------
Confidence                        0113579999999986531          112478999999999975432111   11111       


Q ss_pred             CCCCEEEEEeCCCCCCC
Q 014655          391 LERPFIVVLNKIDLPEM  407 (421)
Q Consensus       391 ~~kP~IIVlNK~Dl~~~  407 (421)
                      .+.|.++|+||+|+...
T Consensus       193 ~~~p~ivv~NK~Dl~~~  209 (341)
T 2p67_A          193 MEVADLIVINKDDGDNH  209 (341)
T ss_dssp             HHHCSEEEECCCCTTCH
T ss_pred             hcccCEEEEECCCCCCh
Confidence            13678999999999764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.90  E-value=6.3e-09  Score=113.41  Aligned_cols=126  Identities=17%  Similarity=0.148  Sum_probs=78.9

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCC------CCc------cCC------CCeeeeccceeecCCCCCCccccccceE
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAK------PDI------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEAT  330 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~------~~i------a~~------pfTTl~p~~g~v~~~~~~~~~~~~~~i~  330 (421)
                      +..+.+|+|||+..+|||||..+|.-..      ..+      .++      -+.|+......+.+... ....-+..|.
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~-~~~~~~~~iN   88 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGS-RGQYDNYRVN   88 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCT-TSCSCCEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccC-cCCCCCEEEE
Confidence            4567799999999999999999985221      111      110      01122111112211100 0000134799


Q ss_pred             EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ++||||+.+..       ....+.++-||..|+|||+......+....|+..++.      +.|.++|+||+|....+
T Consensus        89 lIDTPGHvDF~-------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~------~lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           89 VIDTPGHVDFT-------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY------GVPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             EECCCSCTTCH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH------TCCEEEEEECSSSTTCC
T ss_pred             EEeCCCCcccH-------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEccccccCcc
Confidence            99999998863       3455778889999999999988766665545444442      58999999999987654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.80  E-value=4.6e-09  Score=99.05  Aligned_cols=78  Identities=28%  Similarity=0.320  Sum_probs=48.5

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHH-HHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKE-ELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~-eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ..++|+||||..+.... ..+...+.+++.. +++++|+|++......++..... .+....  ..+.|+++|+||+|+.
T Consensus       109 ~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~  184 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLL  184 (262)
T ss_dssp             CSEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGC
T ss_pred             CCEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEeccccc
Confidence            37999999999765322 1234445566777 99999999875433333322211 111100  0358999999999987


Q ss_pred             CCC
Q 014655          406 EMY  408 (421)
Q Consensus       406 ~~~  408 (421)
                      ...
T Consensus       185 ~~~  187 (262)
T 1yrb_A          185 SEE  187 (262)
T ss_dssp             CHH
T ss_pred             ccc
Confidence            643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.78  E-value=2.9e-09  Score=106.15  Aligned_cols=120  Identities=22%  Similarity=0.260  Sum_probs=65.2

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhc------CCCCc-cCCCCeeee--------ccceeecCCCCC-----C-----
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITH------AKPDI-ADYPFTTLM--------PNLGRLDGDPTL-----G-----  321 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~------~~~~i-a~~pfTTl~--------p~~g~v~~~~~~-----~-----  321 (421)
                      +.+.....|+|+|+||||||||+|+|++      .+..+ +..+.++..        ..++.+...+..     +     
T Consensus        50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l  129 (337)
T 2qm8_A           50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTL  129 (337)
T ss_dssp             GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSH
T ss_pred             cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccc
Confidence            3445566799999999999999999984      33322 111211110        000000000000     0     


Q ss_pred             -------------ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC
Q 014655          322 -------------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP  388 (421)
Q Consensus       322 -------------~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~  388 (421)
                                   ....+.+++|+||||+.+..          ....+.+|++++|+|++..+.   .+.+...+     
T Consensus       130 ~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~~---~~~i~~~i-----  191 (337)
T 2qm8_A          130 GGVAAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGDE---LQGIKKGI-----  191 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC---------CCTTH-----
T ss_pred             cchHHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCccc---HHHHHHHH-----
Confidence                         00013579999999987531          123478999999999864321   11111111     


Q ss_pred             CCCCCCEEEEEeCCCCCC
Q 014655          389 DYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       389 ~l~~kP~IIVlNK~Dl~~  406 (421)
                        .+.+.++|+||+|+..
T Consensus       192 --~~~~~ivvlNK~Dl~~  207 (337)
T 2qm8_A          192 --FELADMIAVNKADDGD  207 (337)
T ss_dssp             --HHHCSEEEEECCSTTC
T ss_pred             --hccccEEEEEchhccC
Confidence              1245688889999764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.68  E-value=3.2e-08  Score=101.62  Aligned_cols=124  Identities=18%  Similarity=0.147  Sum_probs=61.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCC-------CCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADY-------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-  344 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~-------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-  344 (421)
                      .+|+|||.+|||||||+|+|++.......+       +.|+.....+.+...     ......++++||||+....... 
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~-----~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-----GGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----------CEEEEEEECC----------
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec-----CCcccceeeeechhhhhhccchh
Confidence            467999999999999999999876422111       111111111111110     0112368999999986532100 


Q ss_pred             --Cch----hHHHHHh-----------c--ccCCEEEEEeeCC-CCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          345 --KGL----GRNFLRH-----------L--RRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       345 --~gl----~~~fL~~-----------i--~radvIl~VvD~s-~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                        ..+    ...+-..           +  .+++++||+++++ ......+. .+...|.      ...|+|+|+||+|+
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~------~~v~iIlVinK~Dl  179 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH------EKVNIIPLIAKADT  179 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT------TTSEEEEEEESTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh------ccCcEEEEEEcccC
Confidence              001    0011111           1  2355677777765 33322232 2344443      25889999999999


Q ss_pred             CCCC
Q 014655          405 PEMY  408 (421)
Q Consensus       405 ~~~~  408 (421)
                      ....
T Consensus       180 l~~~  183 (418)
T 2qag_C          180 LTPE  183 (418)
T ss_dssp             SCHH
T ss_pred             ccHH
Confidence            7643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.63  E-value=3.4e-08  Score=90.56  Aligned_cols=118  Identities=12%  Similarity=0.087  Sum_probs=65.6

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCC-----CC-ccCCCCeeeeccc--------eeecCCCCCCc----------cc
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAK-----PD-IADYPFTTLMPNL--------GRLDGDPTLGA----------EK  324 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~-----~~-ia~~pfTTl~p~~--------g~v~~~~~~~~----------~~  324 (421)
                      .+..+.|+++|++|||||||+++|+...     .. +...+++|.+...        ..+........          ..
T Consensus        27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (221)
T 2wsm_A           27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF  106 (221)
T ss_dssp             HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred             ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence            3456789999999999999999998652     11 1222333221110        00111000000          11


Q ss_pred             cccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       325 ~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ....+.++||+|......        ...  ..++.+++|+|++....  .   ++..+..     ...|.++|+||+|+
T Consensus       107 ~~~d~iiidt~G~~~~~~--------~~~--~~~~~~i~vvd~~~~~~--~---~~~~~~~-----~~~~~iiv~NK~Dl  166 (221)
T 2wsm_A          107 SDCDLLLIENVGNLICPV--------DFD--LGENYRVVMVSVTEGDD--V---VEKHPEI-----FRVADLIVINKVAL  166 (221)
T ss_dssp             TTCSEEEEEEEEBSSGGG--------GCC--CSCSEEEEEEEGGGCTT--H---HHHCHHH-----HHTCSEEEEECGGG
T ss_pred             CCCCEEEEeCCCCCCCCc--------hhc--cccCcEEEEEeCCCcch--h---hhhhhhh-----hhcCCEEEEecccC
Confidence            234789999999632210        000  14578999999976532  1   1111222     24788999999998


Q ss_pred             CC
Q 014655          405 PE  406 (421)
Q Consensus       405 ~~  406 (421)
                      .+
T Consensus       167 ~~  168 (221)
T 2wsm_A          167 AE  168 (221)
T ss_dssp             HH
T ss_pred             Cc
Confidence            64

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.61  E-value=4.6e-08  Score=94.63  Aligned_cols=125  Identities=18%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-c-------CCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-A-------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG  344 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a-------~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~  344 (421)
                      +.|+|||.+|||||||+|.|++..... .       +.+.++....++.+....     .+...++++|+||+.......
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~-----~~~~~ltv~d~~~~g~~~~~~   77 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG-----GVKMKLTVIDTPGFGDQINNE   77 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC---------CCEEEEECCCC--CCSBCT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC-----CCcCCceEEechhhhhhcccH
Confidence            479999999999999999999854221 1       122222222233332211     122468999999986432211


Q ss_pred             C---ch----hHHHHHh--------------cccCCEEEEEeeCC-CCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655          345 K---GL----GRNFLRH--------------LRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI  402 (421)
Q Consensus       345 ~---gl----~~~fL~~--------------i~radvIl~VvD~s-~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~  402 (421)
                      .   .+    ...+...              +.++++.++++|.. .+....+.+ +...|..      ..++|+|+||+
T Consensus        78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~-~l~~L~~------~~~vI~Vi~K~  150 (270)
T 3sop_A           78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE-FMKHLSK------VVNIIPVIAKA  150 (270)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH-HHHHHHT------TSEEEEEETTG
T ss_pred             HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH-HHHHHHh------cCcEEEEEecc
Confidence            0   11    1112111              24578899999965 344444433 4445543      27899999999


Q ss_pred             CCCCCCC
Q 014655          403 DLPEMYD  409 (421)
Q Consensus       403 Dl~~~~e  409 (421)
                      |.....+
T Consensus       151 D~lt~~e  157 (270)
T 3sop_A          151 DTMTLEE  157 (270)
T ss_dssp             GGSCHHH
T ss_pred             ccCCHHH
Confidence            9887654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.60  E-value=2.4e-08  Score=97.14  Aligned_cols=59  Identities=27%  Similarity=0.425  Sum_probs=38.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  341 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a  341 (421)
                      ..+|+++|.||+|||||+|+|++.+ ..+++.|+||.+.....+           +..+.++||||+....
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~  179 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----------GKELELLDTPGILWPK  179 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-----------TTTEEEEECCCCCCSC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-----------CCCEEEEECcCcCCCC
Confidence            4589999999999999999999987 456889999987754322           2468999999998653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.56  E-value=6.4e-08  Score=103.41  Aligned_cols=100  Identities=21%  Similarity=0.142  Sum_probs=60.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCC-CCCCccccccceEEecCCccccccc-ccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAH-LGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~-~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~  349 (421)
                      ...|+|||.||+|||||+|+|++....+ ++++||...+.+.+... +. + ......+.++||||+.+... ....-..
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~-~-~~~~~~i~LiDTpGi~~~~~~~~~~~~~  114 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPH-P-KKPGHILVLLDTEGLGDVEKGDNQNDSW  114 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEEC-S-SSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeeccc-c-cCCCceEEEecCCCcCcccccchhHHHH
Confidence            4679999999999999999999987555 67777766665554210 00 0 00134799999999986533 1111112


Q ss_pred             HH-HHhcccCCEEEEEeeCCCCCChhhHH
Q 014655          350 NF-LRHLRRTRLLVHVIDAAAENPVNDYR  377 (421)
Q Consensus       350 ~f-L~~i~radvIl~VvD~s~~~~~~~~~  377 (421)
                      .| +..+- ++  ++|+|+.......++.
T Consensus       115 ~fala~ll-ss--~lv~n~~~~i~~~dl~  140 (592)
T 1f5n_A          115 IFALAVLL-SS--TFVYNSIGTINQQAMD  140 (592)
T ss_dssp             HHHHHHHH-CS--EEEEEEESCSSHHHHH
T ss_pred             HHHHHHHh-cC--eEEEECCCCccHHHHH
Confidence            22 23333 33  4566766555454444

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.52  E-value=9.5e-08  Score=98.36  Aligned_cols=131  Identities=16%  Similarity=0.089  Sum_probs=69.7

Q ss_pred             HHhhhhce--ecccCCCCCChhHHHHHHhcCCCC---ccC-CCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          267 LILRVVAD--VGLVGLPNAGKSTLLAAITHAKPD---IAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       267 leLk~i~~--V~LVG~pNaGKSSLLnaLt~~~~~---ia~-~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      +.++....  |+|||.+|||||||+|.|++....   +.. .+.++.. .++.+....     .+...++++|+||+...
T Consensus        35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~-----~l~~~ltv~D~~~~g~~  108 (427)
T 2qag_B           35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQES-----NVRLKLTIVSTVGFGDQ  108 (427)
T ss_dssp             HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC-------CEEEEEEEEEECCCC-
T ss_pred             eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecC-----ccccccchhhhhhhhhc
Confidence            34444444  999999999999999999987521   111 2233333 223322111     11236899999998643


Q ss_pred             cccc---C----chhHHH---HHhc----------ccC--C-EEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEE
Q 014655          341 AHLG---K----GLGRNF---LRHL----------RRT--R-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIV  397 (421)
Q Consensus       341 a~~~---~----gl~~~f---L~~i----------~ra--d-vIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~II  397 (421)
                      ....   .    .+...|   +...          ..+  | +++||+|+..+....+.+ +...|.      ...|+|+
T Consensus       109 ~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die-ilk~L~------~~~~vI~  181 (427)
T 2qag_B          109 INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV-TMKKLD------SKVNIIP  181 (427)
T ss_dssp             CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH-HHHHTC------SCSEEEE
T ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH-HHHHHh------hCCCEEE
Confidence            1100   0    011122   2221          122  2 466777877655555533 223332      3689999


Q ss_pred             EEeCCCCCCCCCc
Q 014655          398 VLNKIDLPEMYDD  410 (421)
Q Consensus       398 VlNK~Dl~~~~e~  410 (421)
                      |+||+|.....+.
T Consensus       182 Vi~KtD~Lt~~E~  194 (427)
T 2qag_B          182 IIAKADAISKSEL  194 (427)
T ss_dssp             EESCGGGSCHHHH
T ss_pred             EEcchhccchHHH
Confidence            9999998876543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.49  E-value=1e-07  Score=93.41  Aligned_cols=124  Identities=16%  Similarity=0.095  Sum_probs=59.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccC-CCC------eee-eccceeecCCCCCCccccccceEEecCCccccccc--
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF------TTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--  342 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-~pf------TTl-~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~--  342 (421)
                      .+|+|||.+|||||||+++|.+....... .++      .|. ....+.+...     ......++++||||+.....  
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~-----~~~~~~ltv~Dt~g~~~~~~~~   93 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-----RGVKLRLTVVDTPGYGDAINCR   93 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC--------CCEEEEEEEEC---------
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC-----CCcccCcchhhhhhhhhhcCcH
Confidence            57899999999999999999875322211 110      111 1111111110     01124689999999842210  


Q ss_pred             -ccCchhH-------HHHHhc----------ccCCEEEEEeeCCCC-CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          343 -LGKGLGR-------NFLRHL----------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       343 -~~~gl~~-------~fL~~i----------~radvIl~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                       .-..+..       .+++.+          .++++++|+++++.. -...+.    +.+..+.   ...++++|+||+|
T Consensus        94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~---~~~~iilV~~K~D  166 (301)
T 2qnr_A           94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIH---NKVNIVPVIAKAD  166 (301)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHT---TTSCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHH---hcCCEEEEEEeCC
Confidence             0112222       222222          234567777776432 212222    3333332   2468999999999


Q ss_pred             CCCCC
Q 014655          404 LPEMY  408 (421)
Q Consensus       404 l~~~~  408 (421)
                      +....
T Consensus       167 l~~~~  171 (301)
T 2qnr_A          167 TLTLK  171 (301)
T ss_dssp             GSCHH
T ss_pred             CCCHH
Confidence            97643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.39  E-value=6.7e-07  Score=93.88  Aligned_cols=124  Identities=15%  Similarity=0.127  Sum_probs=66.7

Q ss_pred             hceecccCCCCCChhHHHHHHh------cCCCCc-cCCCCee-e---------eccceeecCCCCCC-----------cc
Q 014655          272 VADVGLVGLPNAGKSTLLAAIT------HAKPDI-ADYPFTT-L---------MPNLGRLDGDPTLG-----------AE  323 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt------~~~~~i-a~~pfTT-l---------~p~~g~v~~~~~~~-----------~~  323 (421)
                      ...|+|+|.+||||||++++|.      +.++.+ +.-++.. .         ...+-.+.......           ..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~  180 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK  180 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence            4579999999999999999998      554433 1101100 0         00000000000000           00


Q ss_pred             ccccceEEecCCcccccccccCchhHH---HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCE-EEEE
Q 014655          324 KYSSEATLADLPGLIEGAHLGKGLGRN---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVL  399 (421)
Q Consensus       324 ~~~~~i~iiDtPGlie~a~~~~gl~~~---fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~-IIVl  399 (421)
                      +....++|+||||.....   ..+...   +.+ +-.+|.+++|+|+....  +.+.. ...+..      ..|+ ++|+
T Consensus       181 ~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~-~i~pd~vllVvDa~~g~--~~~~~-a~~~~~------~~~i~gvVl  247 (504)
T 2j37_W          181 NENFEIIIVDTSGRHKQE---DSLFEEMLQVAN-AIQPDNIVYVMDASIGQ--ACEAQ-AKAFKD------KVDVASVIV  247 (504)
T ss_dssp             HTTCCEEEEEECCCCTTC---HHHHHHHHHHHH-HHCCSEEEEEEETTCCT--THHHH-HHHHHH------HHCCCCEEE
T ss_pred             HCCCcEEEEeCCCCcccc---hhHHHHHHHHHh-hhcCceEEEEEeccccc--cHHHH-HHHHHh------hcCceEEEE
Confidence            013479999999987431   112111   122 23789999999998643  22222 222222      1464 8999


Q ss_pred             eCCCCCCCC
Q 014655          400 NKIDLPEMY  408 (421)
Q Consensus       400 NK~Dl~~~~  408 (421)
                      ||+|.....
T Consensus       248 NK~D~~~~~  256 (504)
T 2j37_W          248 TKLDGHAKG  256 (504)
T ss_dssp             ECTTSCCCC
T ss_pred             eCCccccch
Confidence            999987543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.32  E-value=2.7e-07  Score=88.84  Aligned_cols=58  Identities=28%  Similarity=0.399  Sum_probs=39.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  341 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a  341 (421)
                      .+|+++|.||+|||||+|+|++... .+++.+++|.......+           ...+.++||||+....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~  158 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-----------ENGVKILDTPGILYKN  158 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-----------TTSCEEESSCEECCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-----------CCCEEEEECCCcccCc
Confidence            6899999999999999999998875 45788888876543222           2368999999998653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.18  E-value=3.7e-06  Score=90.09  Aligned_cols=77  Identities=19%  Similarity=0.268  Sum_probs=41.1

Q ss_pred             cceEEecCCccccc--ccccCchhHHHHH----hccc-CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655          327 SEATLADLPGLIEG--AHLGKGLGRNFLR----HLRR-TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL  399 (421)
Q Consensus       327 ~~i~iiDtPGlie~--a~~~~gl~~~fL~----~i~r-advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVl  399 (421)
                      ..++++|.||+...  +.++......+.+    ++.. ..+++.|+++........   ....+...++  ...+.|+|+
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~---~l~la~~v~~--~g~rtI~Vl  221 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE---ALSMAQEVDP--EGDRTIGIL  221 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH---HHHHHHHHCS--SCCSEEEEE
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH---HHHHHHHHhh--cCCceEEEe
Confidence            35899999998763  2233333333322    2333 356677776543222222   2233344333  457899999


Q ss_pred             eCCCCCCCC
Q 014655          400 NKIDLPEMY  408 (421)
Q Consensus       400 NK~Dl~~~~  408 (421)
                      ||.|+.+..
T Consensus       222 TK~Dlv~~g  230 (608)
T 3szr_A          222 TKPDLVDKG  230 (608)
T ss_dssp             ECGGGSSSS
T ss_pred             cchhhcCcc
Confidence            999998643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.12  E-value=5.8e-06  Score=85.17  Aligned_cols=69  Identities=14%  Similarity=0.249  Sum_probs=41.1

Q ss_pred             cceEEecCCcccccccccCchhHHH--HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCC-C-EEEEEeCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-P-FIVVLNKI  402 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~f--L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k-P-~IIVlNK~  402 (421)
                      ..+.|+||||.....   ..+....  +..+..+|.+++|+|+....  ...    ..++.+..   .. | ..+|+||+
T Consensus       181 ~D~vIIDT~G~~~~~---~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~----~~~~~~~~---~~~~i~gvVlnK~  248 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEE---KGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAG----IQAKAFKE---AVGEIGSIIVTKL  248 (432)
T ss_dssp             CSEEEEECCCSCSSH---HHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHH----HHHHHHHT---TSCSCEEEEEECS
T ss_pred             CCEEEEcCCCCcccc---HHHHHHHHHHHHHhcCcceeEEeeccccH--HHH----HHHHHHhh---cccCCeEEEEeCC
Confidence            479999999986421   1111111  12233689999999987532  221    22333332   23 5 89999999


Q ss_pred             CCCCC
Q 014655          403 DLPEM  407 (421)
Q Consensus       403 Dl~~~  407 (421)
                      |....
T Consensus       249 D~~~~  253 (432)
T 2v3c_C          249 DGSAK  253 (432)
T ss_dssp             SSCST
T ss_pred             CCccc
Confidence            98643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.09  E-value=6.6e-06  Score=84.32  Aligned_cols=111  Identities=17%  Similarity=0.252  Sum_probs=64.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCCC----Cc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKP----DI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~----~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      .|+|+|.+|||||||+|+|++...    .+ .+-.-+|..   +.+...+      ....++++|+||+...    ....
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~~------~~~~ltv~D~~g~~~~----~~~~  137 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHP------NIPNVVFWDLPGIGST----NFPP  137 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEECS------SCTTEEEEECCCGGGS----SCCH
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEecccc------ccCCeeehHhhcccch----HHHH
Confidence            799999999999999999998432    12 111111211   2221111      1136899999998642    1223


Q ss_pred             HHHHHhc--ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          349 RNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       349 ~~fL~~i--~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ..+++.+  ...+..++ ++...  ...+...+...|..     .++|+++|+||.|+.
T Consensus       138 ~~~L~~~~L~~~~~~~~-lS~G~--~~kqrv~la~aL~~-----~~~p~~lV~tkpdll  188 (413)
T 1tq4_A          138 DTYLEKMKFYEYDFFII-ISATR--FKKNDIDIAKAISM-----MKKEFYFVRTKVDSD  188 (413)
T ss_dssp             HHHHHHTTGGGCSEEEE-EESSC--CCHHHHHHHHHHHH-----TTCEEEEEECCHHHH
T ss_pred             HHHHHHcCCCccCCeEE-eCCCC--ccHHHHHHHHHHHh-----cCCCeEEEEecCccc
Confidence            3444433  44455554 66543  22333345555655     358999999999874

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.90  E-value=5.3e-06  Score=76.01  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +...+|+|+|.+|||||||+++|+..
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            34679999999999999999999865

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.78  E-value=5.3e-05  Score=78.23  Aligned_cols=70  Identities=14%  Similarity=0.186  Sum_probs=41.3

Q ss_pred             cceEEecCCcccccccccCchhHHH--HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~f--L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++|+||||.....   ..+-...  +..+..+|.+++|+|+...  ..... ....+..     .-.+..+|+||+|.
T Consensus       183 ~DvVIIDTaGrl~~d---~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~-~a~~f~~-----~~~i~gVIlTKlD~  251 (443)
T 3dm5_A          183 VDIIIVDTAGRHKED---KALIEEMKQISNVIHPHEVILVIDGTIG--QQAYN-QALAFKE-----ATPIGSIIVTKLDG  251 (443)
T ss_dssp             CSEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHH-HHHHHHH-----SCTTEEEEEECCSS
T ss_pred             CCEEEEECCCcccch---HHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHH-HHHHHHh-----hCCCeEEEEECCCC
Confidence            579999999975421   1121111  2233468999999999753  22222 2222322     12456799999998


Q ss_pred             CCC
Q 014655          405 PEM  407 (421)
Q Consensus       405 ~~~  407 (421)
                      ...
T Consensus       252 ~~~  254 (443)
T 3dm5_A          252 SAK  254 (443)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.54  E-value=8.4e-05  Score=76.85  Aligned_cols=69  Identities=17%  Similarity=0.072  Sum_probs=43.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcC---------------CCCccCCCCeeeeccceeecCC-CCC--CccccccceEEec
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA---------------KPDIADYPFTTLMPNLGRLDGD-PTL--GAEKYSSEATLAD  333 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~---------------~~~ia~~pfTTl~p~~g~v~~~-~~~--~~~~~~~~i~iiD  333 (421)
                      +.-|+|+|.+++|||||||.|.+.               ...+-....||...+.|++-.. +..  ........+.++|
T Consensus        67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD  146 (447)
T 3q5d_A           67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD  146 (447)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred             eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence            356899999999999999999864               2223223335666666665322 100  0001124699999


Q ss_pred             CCccccc
Q 014655          334 LPGLIEG  340 (421)
Q Consensus       334 tPGlie~  340 (421)
                      |||+.+.
T Consensus       147 TeG~~~~  153 (447)
T 3q5d_A          147 TQGTFDS  153 (447)
T ss_dssp             EECCCSS
T ss_pred             CCccccc
Confidence            9998654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.53  E-value=5.5e-05  Score=77.91  Aligned_cols=70  Identities=16%  Similarity=0.146  Sum_probs=39.8

Q ss_pred             cceEEecCCcccccccccCchhHH---HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRN---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~---fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      ..+.|+||||..... .+..+...   +++. -..+.+++|+|+....  +.. .+...+..     .-.+..||+||+|
T Consensus       180 ~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~-~~pd~vlLVlDa~~gq--~a~-~~a~~f~~-----~~~~~gVIlTKlD  249 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYG-EETKLLEEMKEMYDV-LKPDDVILVIDASIGQ--KAY-DLASRFHQ-----ASPIGSVIITKMD  249 (433)
T ss_dssp             CSEEEEEECCCSSSC-CTTHHHHHHHHHHHH-HCCSEEEEEEEGGGGG--GGH-HHHHHHHH-----HCSSEEEEEECGG
T ss_pred             CCEEEEECCCCcccc-CCHHHHHHHHHHHHh-hCCcceEEEEeCccch--HHH-HHHHHHhc-----ccCCcEEEEeccc
Confidence            579999999964310 11222222   2222 2468999999997532  222 22233332     1246789999999


Q ss_pred             CCC
Q 014655          404 LPE  406 (421)
Q Consensus       404 l~~  406 (421)
                      ...
T Consensus       250 ~~a  252 (433)
T 3kl4_A          250 GTA  252 (433)
T ss_dssp             GCS
T ss_pred             ccc
Confidence            764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.51  E-value=0.00014  Score=68.33  Aligned_cols=92  Identities=11%  Similarity=-0.029  Sum_probs=47.9

Q ss_pred             ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC--CCCCCEEEEEeCC-CC
Q 014655          328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKI-DL  404 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kP~IIVlNK~-Dl  404 (421)
                      ++.+..+||-.+. --+..+...|..+.+.+|+||||||+++....+..+.+.+......+.  +.+.|++|.+||. |+
T Consensus        97 k~~~~~~~~~~~~-GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl  175 (227)
T 3l82_B           97 KMFSRHNEGDDQQ-GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD  175 (227)
T ss_dssp             ---------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT
T ss_pred             hcccccCCCcccc-CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc
Confidence            3556666652111 112334555666778999999999999865444333332111223332  3578999999995 78


Q ss_pred             CCCCCchHHHHhCCCC
Q 014655          405 PEMYDDSSSRQGIGFN  420 (421)
Q Consensus       405 ~~~~e~~~~l~~lGl~  420 (421)
                      +.+-...+..+.++|+
T Consensus       176 p~Ams~~EI~e~L~L~  191 (227)
T 3l82_B          176 VKRMPCFYLAHELHLN  191 (227)
T ss_dssp             SCBCCHHHHHHHTTGG
T ss_pred             cCCCCHHHHHHHcCCc
Confidence            7776666666777664

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.47  E-value=4.2e-05  Score=76.69  Aligned_cols=72  Identities=13%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC-------hhhHHHHHHHHHhcC--CCCCCCCEEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYN--PDYLERPFIV  397 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~-------~~~~~~l~~eL~~~~--~~l~~kP~II  397 (421)
                      ..+.+|||+|....       ...+..+.+.++++|||+|+++.+.       ...+..+..+++...  ....+.|+|+
T Consensus       193 ~~l~iwDt~GQe~~-------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiL  265 (353)
T 1cip_A          193 LHFKMFDVGGQRSE-------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL  265 (353)
T ss_dssp             EEEEEEEECCSGGG-------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEE
T ss_pred             eeEEEEeCCCchhh-------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEE
Confidence            46899999997543       3344556789999999999998543       233333333333221  1224689999


Q ss_pred             EEeCCCCC
Q 014655          398 VLNKIDLP  405 (421)
Q Consensus       398 VlNK~Dl~  405 (421)
                      |+||+|+.
T Consensus       266 v~NK~DL~  273 (353)
T 1cip_A          266 FLNKKDLF  273 (353)
T ss_dssp             EEECHHHH
T ss_pred             EEECcCch
Confidence            99999985

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.33  E-value=0.00014  Score=74.23  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=49.3

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFI  396 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~~~~l~~kP~I  396 (421)
                      ..+.+|||+|....       ...+..+.+.++++|||+|+++          ....++...+++.+... ....+.|++
T Consensus       217 v~l~iwDtaGQe~~-------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~-~~~~~~pii  288 (402)
T 1azs_C          217 VNFHMFDVGGQRDE-------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN-RWLRTISVI  288 (402)
T ss_dssp             EEEEEEEECCSGGG-------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC-TTCSSCCEE
T ss_pred             ccceecccchhhhh-------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc-ccCCCCeEE
Confidence            36899999997543       2334456788999999999997          33344444444444432 123568999


Q ss_pred             EEEeCCCCC
Q 014655          397 VVLNKIDLP  405 (421)
Q Consensus       397 IVlNK~Dl~  405 (421)
                      +|+||+|+.
T Consensus       289 LvgNK~DL~  297 (402)
T 1azs_C          289 LFLNKQDLL  297 (402)
T ss_dssp             EEEECHHHH
T ss_pred             EEEEChhhh
Confidence            999999984

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=97.31  E-value=0.00016  Score=72.17  Aligned_cols=72  Identities=17%  Similarity=0.161  Sum_probs=48.3

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFI  396 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~~~~l~~kP~I  396 (421)
                      ..+.+|||+|...       ....+..+.+.++++|||+|+++          .....+...+++.+... ....+.|++
T Consensus       161 v~l~iwDtaGQe~-------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~-~~~~~~pii  232 (340)
T 4fid_A          161 IPFHLIDVGGQRS-------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN-EFLKGAVKL  232 (340)
T ss_dssp             CEEEEEECCSCHH-------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC-GGGTTSEEE
T ss_pred             eeeccccCCCccc-------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh-hccCCCeEE
Confidence            4789999999743       24455667889999999999983          22233333333333321 223468999


Q ss_pred             EEEeCCCCCC
Q 014655          397 VVLNKIDLPE  406 (421)
Q Consensus       397 IVlNK~Dl~~  406 (421)
                      +|+||+|+..
T Consensus       233 Lv~NK~DL~~  242 (340)
T 4fid_A          233 IFLNKMDLFE  242 (340)
T ss_dssp             EEEECHHHHH
T ss_pred             EEEECchhhh
Confidence            9999999854

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.24  E-value=0.00024  Score=68.84  Aligned_cols=63  Identities=21%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      |-+.||++..      ..+.++++++++|+|++|+|+.++..... ..+.+.+       .++|.++|+||+|+.+.
T Consensus         3 i~w~PGhm~k------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-------~~kp~ilVlNK~DL~~~   65 (282)
T 1puj_A            3 IQWFPGHMAK------ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-------KNKPRIMLLNKADKADA   65 (282)
T ss_dssp             ------CTTH------HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-------SSSCEEEEEECGGGSCH
T ss_pred             CcCCchHHHH------HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-------CCCCEEEEEECcccCCH
Confidence            4567898643      35678899999999999999988765443 1222222       36999999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.21  E-value=0.00039  Score=67.71  Aligned_cols=67  Identities=15%  Similarity=0.147  Sum_probs=48.0

Q ss_pred             ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+.+|||  +...    ..+.+   .+++.+|++++|+|++++. ....+..+..+++.     .+.|+++|+||+|+.+
T Consensus        64 ~~~iwD~--qer~----~~l~~---~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~  129 (301)
T 1u0l_A           64 SGVIENV--LHRK----NLLTK---PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD  129 (301)
T ss_dssp             SEEEEEE--CCCS----CEETT---TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred             eEEEEEE--cccc----ceeec---cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence            5899999  3222    12322   3578999999999999876 45555666666554     3689999999999976


Q ss_pred             CC
Q 014655          407 MY  408 (421)
Q Consensus       407 ~~  408 (421)
                      ..
T Consensus       130 ~~  131 (301)
T 1u0l_A          130 ED  131 (301)
T ss_dssp             HH
T ss_pred             ch
Confidence            43

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.20  E-value=9e-05  Score=74.54  Aligned_cols=71  Identities=13%  Similarity=0.216  Sum_probs=44.7

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC----------ChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFI  396 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~----------~~~~~~~l~~eL~~~~~~l~~kP~I  396 (421)
                      ..+.+|||+|....       ...+..+++.++++|||+|+++.+          ...+...+++.+... ....+.|+|
T Consensus       201 ~~l~i~Dt~Gq~~~-------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~-~~~~~~piI  272 (362)
T 1zcb_A          201 VPFKMVDVGGQRSE-------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-RVFSNVSII  272 (362)
T ss_dssp             EEEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEE
T ss_pred             eEEEEEeccchhhh-------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc-hhhCCCCEE
Confidence            46899999997543       223445568899999999999832          233333344444321 122468999


Q ss_pred             EEEeCCCCC
Q 014655          397 VVLNKIDLP  405 (421)
Q Consensus       397 IVlNK~Dl~  405 (421)
                      +|+||+|+.
T Consensus       273 Lv~NK~DL~  281 (362)
T 1zcb_A          273 LFLNKTDLL  281 (362)
T ss_dssp             EEEECHHHH
T ss_pred             EEEEChhhh
Confidence            999999985

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.20  E-value=0.00094  Score=65.17  Aligned_cols=70  Identities=17%  Similarity=0.156  Sum_probs=39.9

Q ss_pred             cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKID  403 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~D  403 (421)
                      ..++|+||||..... ....+...  -+..+..+|.+++|+|+...  .+.+..+    +.+..   ..+ ..+|+||+|
T Consensus       181 ~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~----~~~~~---~~~i~gvVlnk~D  250 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLA----SKFNQ---ASKIGTIIITKMD  250 (297)
T ss_dssp             CSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHH----HHHHH---TCTTEEEEEECGG
T ss_pred             CCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHH----HHHHh---hCCCCEEEEeCCC
Confidence            479999999976510 00111111  01234578999999998742  2222222    22221   234 788999999


Q ss_pred             CCC
Q 014655          404 LPE  406 (421)
Q Consensus       404 l~~  406 (421)
                      ...
T Consensus       251 ~~~  253 (297)
T 1j8m_F          251 GTA  253 (297)
T ss_dssp             GCT
T ss_pred             CCc
Confidence            754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.10  E-value=0.00016  Score=72.60  Aligned_cols=71  Identities=15%  Similarity=0.256  Sum_probs=46.8

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCC----------CCCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFI  396 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s----------~~~~~~~~~~l~~eL~~~~~~l~~kP~I  396 (421)
                      ..+.+|||+|....       ...+..+.+.++++|+|+|++          +....++...+++++... ....+.|++
T Consensus       183 v~l~iwDtaGQe~~-------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~-~~~~~~pii  254 (354)
T 2xtz_A          183 EVYRLFDVGGQRNE-------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFM  254 (354)
T ss_dssp             -EEEEEEECCSTTG-------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC-GGGSSCEEE
T ss_pred             eeeEEEECCCchhh-------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc-cccCCCeEE
Confidence            46899999997543       223445578899999999998          233333333344444331 112468999


Q ss_pred             EEEeCCCCC
Q 014655          397 VVLNKIDLP  405 (421)
Q Consensus       397 IVlNK~Dl~  405 (421)
                      +|+||+|+.
T Consensus       255 LvgNK~DL~  263 (354)
T 2xtz_A          255 LFLNKFDIF  263 (354)
T ss_dssp             EEEECHHHH
T ss_pred             EEEECcchh
Confidence            999999984

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.10  E-value=0.00021  Score=66.03  Aligned_cols=43  Identities=28%  Similarity=0.492  Sum_probs=34.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeeccceeecC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDG  316 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~v~~  316 (421)
                      -|+|+|++|||||||+++|.+..+. + ...+.||..|..|.+++
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G   65 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDG   65 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTT
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeecc
Confidence            5889999999999999999987652 2 56778888888776543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=97.03  E-value=0.00025  Score=70.39  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=47.9

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCC-------CCCChhhHHHHHHHHHhcC--CCCCCCCEEE
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA-------AENPVNDYRTVKEELRMYN--PDYLERPFIV  397 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s-------~~~~~~~~~~l~~eL~~~~--~~l~~kP~II  397 (421)
                      ..+.+|||.|....       ...+..+.+.++++|||+|++       +......+.....+++...  +...+.|+++
T Consensus       167 v~l~iwDtgGQe~~-------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL  239 (327)
T 3ohm_A          167 VIFRMVDVGGQRSE-------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL  239 (327)
T ss_dssp             EEEEEEEECCSHHH-------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEE
T ss_pred             eeeEEEEcCCchhH-------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEE
Confidence            36899999997543       233445678999999999886       3223333443433333321  2234689999


Q ss_pred             EEeCCCCCC
Q 014655          398 VLNKIDLPE  406 (421)
Q Consensus       398 VlNK~Dl~~  406 (421)
                      |+||+|+..
T Consensus       240 ~~NK~DL~~  248 (327)
T 3ohm_A          240 FLNKKDLLE  248 (327)
T ss_dssp             EEECHHHHH
T ss_pred             EEECchhhh
Confidence            999999854

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.96  E-value=0.00069  Score=66.44  Aligned_cols=76  Identities=12%  Similarity=0.018  Sum_probs=49.4

Q ss_pred             CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC--CCCCCEEEEEeC-CCCCCCCCchHHHHhCCCC
Q 014655          345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNK-IDLPEMYDDSSSRQGIGFN  420 (421)
Q Consensus       345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kP~IIVlNK-~Dl~~~~e~~~~l~~lGl~  420 (421)
                      ..+...|..+.+.+|+||||||+++.+-.+..+.+.+......+.  +.+.|++|.+|| .|++.+....+..+.++|+
T Consensus       198 ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~  276 (312)
T 3l2o_B          198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN  276 (312)
T ss_dssp             CCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGG
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCc
Confidence            445556667789999999999999875443223222111111111  357899999997 5888777666776777764

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.93  E-value=0.0013  Score=58.82  Aligned_cols=68  Identities=4%  Similarity=-0.116  Sum_probs=47.5

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ..++|+|+|+....         .....+..+|.+++|++.+...  .....+.+.++.........++.+|+|++|..
T Consensus        76 yD~viiD~~~~~~~---------~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           76 YDFAIVDGAGSLSV---------ITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             SSEEEEECCSSSSH---------HHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCEEEEECCCCCCH---------HHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            47999999986532         2345567799999999987654  55566667776543222345678999999954

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.78  E-value=0.0014  Score=63.77  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ..-++|+|++|||||||+|+|. ..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            3468999999999999999999 54

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.77  E-value=0.00031  Score=69.15  Aligned_cols=26  Identities=31%  Similarity=0.332  Sum_probs=21.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ..-.++|+|.+|||||||+|+|.+..
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccc
Confidence            34578999999999999999998754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.77  E-value=0.0032  Score=64.64  Aligned_cols=69  Identities=20%  Similarity=0.215  Sum_probs=38.9

Q ss_pred             cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKID  403 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~D  403 (421)
                      ..++|+||||.....   ..+...  -...+..++.+++|+|+....  ..+..+    ..++.   ..+ .-+|+||+|
T Consensus       184 ~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~----~~f~~---~l~i~gvVlnK~D  251 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTA----KAFNE---ALPLTGVVLTKVD  251 (433)
T ss_dssp             CSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHH----HHHHH---HSCCCCEEEECTT
T ss_pred             CCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHH----HHHhc---cCCCeEEEEecCC
Confidence            479999999975421   112111  112344688999999987542  222222    22221   123 346899999


Q ss_pred             CCCC
Q 014655          404 LPEM  407 (421)
Q Consensus       404 l~~~  407 (421)
                      ....
T Consensus       252 ~~~~  255 (433)
T 2xxa_A          252 GDAR  255 (433)
T ss_dssp             SSSC
T ss_pred             CCcc
Confidence            7543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.74  E-value=0.0014  Score=65.02  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=20.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .--|+|+|++|||||||++.|.+.
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.73  E-value=0.00088  Score=67.30  Aligned_cols=57  Identities=26%  Similarity=0.223  Sum_probs=35.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC--CccCCCC-------eeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP--DIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~--~ia~~pf-------TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      -.++|+|.+|||||||+|+|.+...  .......       ||....++.+.           ....++|+||+.+.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-----------q~~~l~dtpgv~e~  281 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-----------HGGDVIDSPGVREF  281 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-----------TSCEEEECHHHHTC
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-----------CCCEecCcccHHHh
Confidence            4689999999999999999998653  2222211       33333333332           23468999998764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.60  E-value=0.0037  Score=60.84  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=39.1

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcc--cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~--radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..+.|+||||.....   ..+...+.+.+.  ..+.+++|+|++..  ..+   +.+....+..  .. ..-+|+||+|.
T Consensus       183 ~dlvIiDT~G~~~~~---~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~---~~~~~~~~~~--l~-~~giVltk~D~  251 (296)
T 2px0_A          183 YDHVFVDTAGRNFKD---PQYIDELKETIPFESSIQSFLVLSATAK--YED---MKHIVKRFSS--VP-VNQYIFTKIDE  251 (296)
T ss_dssp             SSEEEEECCCCCTTS---HHHHHHHHHHSCCCTTEEEEEEEETTBC--HHH---HHHHTTTTSS--SC-CCEEEEECTTT
T ss_pred             CCEEEEeCCCCChhh---HHHHHHHHHHHhhcCCCeEEEEEECCCC--HHH---HHHHHHHHhc--CC-CCEEEEeCCCc
Confidence            479999999986431   122222223333  36778999998742  222   3333333331  22 24567899997


Q ss_pred             CCC
Q 014655          405 PEM  407 (421)
Q Consensus       405 ~~~  407 (421)
                      ...
T Consensus       252 ~~~  254 (296)
T 2px0_A          252 TTS  254 (296)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.59  E-value=0.0046  Score=60.50  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -|+|+|+.|||||||++.|.+
T Consensus       104 vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            689999999999999999975

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.49  E-value=0.0026  Score=61.96  Aligned_cols=50  Identities=14%  Similarity=0.074  Sum_probs=38.4

Q ss_pred             hcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+..+|++++|+|++++. ....++.++.+++.     .++|.++|+||+|+.+..
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~  126 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEE  126 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHH
T ss_pred             HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCcc
Confidence            578999999999999775 45544555555554     468999999999997643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.49  E-value=0.00063  Score=65.12  Aligned_cols=58  Identities=31%  Similarity=0.450  Sum_probs=39.2

Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ||++..      ..+.++++++++|++++|+|+.++......     +++ +    .++|.++|+||+|+.+..
T Consensus         5 PGhm~k------a~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l----l~k~~iivlNK~DL~~~~   62 (262)
T 3cnl_A            5 PGHIEK------AKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F----SRKETIILLNKVDIADEK   62 (262)
T ss_dssp             ----CC------TTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C----TTSEEEEEEECGGGSCHH
T ss_pred             chHHHH------HHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h----cCCCcEEEEECccCCCHH
Confidence            676543      245788999999999999999876543321     111 1    168999999999998753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.46  E-value=0.0013  Score=65.95  Aligned_cols=52  Identities=23%  Similarity=0.329  Sum_probs=37.2

Q ss_pred             HHHHHhc-ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          349 RNFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       349 ~~fL~~i-~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +++++++ ++++++++|+|++++..     .+..++..+.   .++|+++|+||+|+.+.+
T Consensus        62 ~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l---~~~piilV~NK~DLl~~~  114 (369)
T 3ec1_A           62 LSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA---ADNPILLVGNKADLLPRS  114 (369)
T ss_dssp             HHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC---TTSCEEEEEECGGGSCTT
T ss_pred             HHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh---CCCCEEEEEEChhcCCCc
Confidence            3567776 78899999999987542     2233344432   368999999999998754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.44  E-value=0.0025  Score=62.46  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             hceecccCCCCCChhHHHHHHhc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..-|+++|.+|+||||++..|..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Confidence            34588999999999999999865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.36  E-value=0.0029  Score=61.48  Aligned_cols=25  Identities=36%  Similarity=0.404  Sum_probs=21.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .-.++|+|++|||||||||+|.+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccc
Confidence            3468999999999999999999865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.34  E-value=0.0039  Score=65.19  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             hceecccCCCCCChhHHHHHHhc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .--|+|||..|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            33589999999999999999876

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.23  E-value=0.0021  Score=64.47  Aligned_cols=52  Identities=21%  Similarity=0.206  Sum_probs=36.6

Q ss_pred             HHHHHhccc-CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          349 RNFLRHLRR-TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       349 ~~fL~~i~r-advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      +++++++.+ ++++++|+|++++.     ..+..+|..+.   .++|+++|+||+|+.+.+
T Consensus        60 ~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~  112 (368)
T 3h2y_A           60 LRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV---GNNKVLLVGNKADLIPKS  112 (368)
T ss_dssp             HHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS---SSSCEEEEEECGGGSCTT
T ss_pred             HHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh---CCCcEEEEEEChhcCCcc
Confidence            355666654 56999999998531     33444555543   368999999999997654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.07  E-value=0.0076  Score=59.34  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             hhhceecccCCCCCChhHHHHHHhc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      +...-|+++|.+|+||||++..|..
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3444689999999999999998864

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.84  E-value=0.0035  Score=55.78  Aligned_cols=41  Identities=22%  Similarity=0.348  Sum_probs=28.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeeccceee
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRL  314 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~v  314 (421)
                      -|+|+|+++||||||++.|.+..+. . .....||..|..+.+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~   49 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEE   49 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcccc
Confidence            4899999999999999999876531 2 344556666555443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.78  E-value=0.0047  Score=56.29  Aligned_cols=43  Identities=33%  Similarity=0.479  Sum_probs=35.2

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeeccceeecCC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDGD  317 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~v~~~  317 (421)
                      |.|+|+++||||||+++|....+. + -..+.||..|..|.+++.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~   48 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGK   48 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCc
Confidence            789999999999999999877653 3 567889998888876654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.52  E-value=0.0041  Score=56.40  Aligned_cols=23  Identities=43%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .|+|+|++|||||||++.|.+..
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.35  E-value=0.012  Score=60.32  Aligned_cols=22  Identities=36%  Similarity=0.335  Sum_probs=19.2

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .-|+++|.+++||||++..|..
T Consensus        99 ~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           99 NLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.19  E-value=0.012  Score=53.61  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeecccee
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGR  313 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~  313 (421)
                      -|+|+|+++||||||++.|....+. . .....||..|..+.
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e   51 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE   51 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence            4899999999999999999987542 2 44556666665543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.96  E-value=0.028  Score=55.08  Aligned_cols=51  Identities=18%  Similarity=0.103  Sum_probs=35.6

Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+..+|.+++|+|+..+++...  .+...|....  ..++|.+||+||+||.+..
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~--~~~~~~vivlnK~DL~~~~  133 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVE--ANDIQPIICITKMDLIEDQ  133 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH--HHHHHHHHHH--TTTCEEEEEEECGGGCCCH
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHH--HCCCCEEEEEECCccCchh
Confidence            4788999999999987655433  3334442210  1468899999999998764

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.91  E-value=0.0098  Score=53.36  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .++|+|+++||||||++.|++.-
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.80  E-value=0.012  Score=53.07  Aligned_cols=40  Identities=20%  Similarity=0.208  Sum_probs=27.8

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeecccee
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGR  313 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~  313 (421)
                      -|+|+|+++||||||.+.|....+. . .....||..+..+.
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e   55 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKE   55 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCC
Confidence            5889999999999999999875432 2 22344565554433

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.61  E-value=0.011  Score=54.37  Aligned_cols=30  Identities=17%  Similarity=0.218  Sum_probs=22.7

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.+...--++|+|+++||||||++.|.+..
T Consensus        18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            444444579999999999999999998855

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.48  E-value=0.013  Score=52.19  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKP  297 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~  297 (421)
                      -|+|+|+++||||||++.|.+..+
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCC
Confidence            589999999999999999987643

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.47  E-value=0.013  Score=51.78  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=20.4

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|+++||||||++.|.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=94.36  E-value=0.014  Score=52.81  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP  297 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~  297 (421)
                      --++|+|+.+||||||++.|.+..+
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3689999999999999999988654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.31  E-value=0.013  Score=54.36  Aligned_cols=36  Identities=28%  Similarity=0.293  Sum_probs=27.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCC--c-cCCCCeeeec
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPD--I-ADYPFTTLMP  309 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~--i-a~~pfTTl~p  309 (421)
                      -++|+|+.|||||||++.|.+..+.  + .....||..+
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~   56 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP   56 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence            6899999999999999999986541  2 3455555544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.15  E-value=0.018  Score=56.38  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=24.5

Q ss_pred             hHHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          266 ELILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       266 ~leLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+.++..-.|+|+|++|||||||++.|.+-
T Consensus       120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             HHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            344555568999999999999999999864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.13  E-value=0.017  Score=50.11  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.++||||||.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=94.12  E-value=0.017  Score=52.36  Aligned_cols=22  Identities=45%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+|+|.++||||||++.|.+.
T Consensus        24 ~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           24 LVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=93.95  E-value=0.011  Score=54.28  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=17.5

Q ss_pred             hhhhceecccCCCCCChhHHHHHHh-cCC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAIT-HAK  296 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt-~~~  296 (421)
                      ++...-|+|+|+++||||||++.|. +..
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3444468999999999999999999 654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=93.83  E-value=0.021  Score=50.30  Aligned_cols=27  Identities=30%  Similarity=0.206  Sum_probs=23.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +..--++|+|+.+||||||++.|.+..
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            444468999999999999999998865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.67  E-value=0.016  Score=54.31  Aligned_cols=29  Identities=28%  Similarity=0.329  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...--++|+|+.+||||||++.|++-.
T Consensus        27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34444479999999999999999999864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.63  E-value=0.014  Score=54.19  Aligned_cols=30  Identities=30%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+||||||++.|++-.
T Consensus        25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           25 LSVKKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344444478999999999999999999864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=93.61  E-value=0.025  Score=50.05  Aligned_cols=21  Identities=24%  Similarity=0.186  Sum_probs=19.2

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -++|+|+++||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999976

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=93.60  E-value=0.024  Score=50.41  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=21.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .-|+|+|.++||||||++.|.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999998764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=93.59  E-value=0.026  Score=50.70  Aligned_cols=31  Identities=29%  Similarity=0.294  Sum_probs=22.1

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.+.+.....|+|+|+++|||||+.+.|...
T Consensus        18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3445555668999999999999999999753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=93.56  E-value=0.015  Score=51.23  Aligned_cols=20  Identities=35%  Similarity=0.330  Sum_probs=17.9

Q ss_pred             eecccCCCCCChhHHHHHHh
Q 014655          274 DVGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt  293 (421)
                      -++|+|+++||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            58999999999999999654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.55  E-value=0.017  Score=54.72  Aligned_cols=30  Identities=27%  Similarity=0.258  Sum_probs=24.6

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+||||||++.|++-.
T Consensus        28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           28 ISVNKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344445579999999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.34  E-value=0.019  Score=53.86  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=23.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|+.+||||||++.|++-.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34444479999999999999999998864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.33  E-value=0.02  Score=54.60  Aligned_cols=30  Identities=30%  Similarity=0.443  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--++|+|+.+||||||++.|++-.
T Consensus        27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           27 LQARAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344444478999999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.32  E-value=0.019  Score=53.75  Aligned_cols=29  Identities=34%  Similarity=0.355  Sum_probs=23.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...-.++|+|+.+||||||++.|++-.
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           27 SIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34444479999999999999999998864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.30  E-value=0.02  Score=53.39  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.+...-.++|+|+.+||||||++.|++..
T Consensus        29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           29 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            334444479999999999999999999864

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.27  E-value=0.03  Score=50.27  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=20.0

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|+++||||||++.|.+.
T Consensus        31 ~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999999764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.24  E-value=0.02  Score=54.74  Aligned_cols=30  Identities=37%  Similarity=0.368  Sum_probs=24.3

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+||||||++.|++-.
T Consensus        32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            334444479999999999999999999854

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.24  E-value=0.02  Score=54.07  Aligned_cols=30  Identities=33%  Similarity=0.423  Sum_probs=24.6

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...-.++|+|+.+||||||++.|++-.
T Consensus        30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344444579999999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.20  E-value=0.021  Score=53.80  Aligned_cols=30  Identities=27%  Similarity=0.289  Sum_probs=24.8

Q ss_pred             hHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          266 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       266 ~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .++++. --++|+|+.|||||||++.|++-.
T Consensus        19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            344555 578999999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.20  E-value=0.019  Score=53.14  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+||||||++.|++-.
T Consensus        30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344444468999999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.18  E-value=0.021  Score=55.00  Aligned_cols=30  Identities=20%  Similarity=0.240  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.++..--++|+|+.+||||||++.|++-.
T Consensus        29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            344444478999999999999999999854

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.17  E-value=0.021  Score=54.52  Aligned_cols=29  Identities=28%  Similarity=0.349  Sum_probs=23.7

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...--++|+|+.+||||||++.|++-.
T Consensus        46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           46 HIREGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            33444478999999999999999999864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.15  E-value=0.031  Score=51.97  Aligned_cols=31  Identities=26%  Similarity=0.196  Sum_probs=22.7

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.+.+....-|+|+|..+||||||++.|.+.
T Consensus        18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             -----CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3345555567999999999999999999773

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.06  E-value=0.022  Score=53.43  Aligned_cols=29  Identities=34%  Similarity=0.306  Sum_probs=23.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...--++|+|+.+||||||++.|++-.
T Consensus        28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           28 KVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34444478999999999999999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=93.06  E-value=0.03  Score=50.35  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=20.3

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+|+|.++||||||++.|.+.
T Consensus         8 ~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            8 VIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.01  E-value=0.024  Score=53.57  Aligned_cols=28  Identities=29%  Similarity=0.252  Sum_probs=23.6

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ++...--++|+|+.+||||||++.|++-
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           25 VVPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3444447899999999999999999985

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=92.99  E-value=0.033  Score=51.23  Aligned_cols=26  Identities=23%  Similarity=0.082  Sum_probs=22.4

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...-.++|+|+.+||||||++.|++.
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34446899999999999999999876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.96  E-value=0.025  Score=54.02  Aligned_cols=27  Identities=26%  Similarity=0.286  Sum_probs=22.9

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +...--++|+|+.+||||||++.|++-
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            333447899999999999999999986

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=92.96  E-value=0.095  Score=52.46  Aligned_cols=60  Identities=23%  Similarity=0.227  Sum_probs=34.8

Q ss_pred             cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC------chHHHHhCCC
Q 014655          355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD------DSSSRQGIGF  419 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e------~~~~l~~lGl  419 (421)
                      +..+|.+++| |+..+.+.  ...+...|....  ..++|.+||+||+||.+..+      ....++.+|+
T Consensus       128 ~anvD~v~iv-~a~~P~~~--~~~i~r~L~~a~--~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~  193 (358)
T 2rcn_A          128 AANIDQIVIV-SAILPELS--LNIIDRYLVGCE--TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGY  193 (358)
T ss_dssp             EECCCEEEEE-EESTTTCC--HHHHHHHHHHHH--HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTC
T ss_pred             HhcCCEEEEE-EeCCCCCC--HHHHHHHHHHHH--hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCC
Confidence            5789999966 55444432  223333332100  03578899999999987643      2334455654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=92.95  E-value=0.037  Score=49.58  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.-++|+|++|+|||||+++|...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            457899999999999999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.94  E-value=0.024  Score=53.71  Aligned_cols=30  Identities=40%  Similarity=0.355  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+||||||++.|++-.
T Consensus        21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           21 GEVRAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344444478999999999999999999864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=92.93  E-value=0.024  Score=53.91  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=24.6

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.+...-.++|+|+.+||||||++.|++-.
T Consensus        41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            344445579999999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.92  E-value=0.024  Score=54.61  Aligned_cols=29  Identities=31%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...-.++|+|+.+||||||++.|++-.
T Consensus        43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           43 QIAKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33444478999999999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=92.91  E-value=0.025  Score=53.83  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+||||||++.|++-.
T Consensus        36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            344444478999999999999999999864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.85  E-value=0.041  Score=51.07  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=19.7

Q ss_pred             ceecccCCCCCChhHHHHHHh
Q 014655          273 ADVGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt  293 (421)
                      ..|+|+|.++||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            369999999999999999998

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.82  E-value=0.044  Score=53.98  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=26.7

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.+.++..-.|+|+|.++||||||+++|.+.-
T Consensus       164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44556666689999999999999999999864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=92.80  E-value=0.039  Score=48.03  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+|+|.++|||||+++.|.+.
T Consensus        10 ~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            5899999999999999998753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=92.78  E-value=0.026  Score=54.06  Aligned_cols=28  Identities=32%  Similarity=0.283  Sum_probs=23.2

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +...-.++|+|+.+||||||++.|++-.
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           42 LYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3333479999999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.77  E-value=0.045  Score=54.49  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=27.5

Q ss_pred             hhhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       264 ~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+.+.++..-.|+|+|.++||||||+++|.+.-
T Consensus       167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            345566677789999999999999999999854

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=92.73  E-value=0.15  Score=46.35  Aligned_cols=78  Identities=14%  Similarity=0.073  Sum_probs=49.4

Q ss_pred             cceEEecCCcc-cccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          327 SEATLADLPGL-IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       327 ~~i~iiDtPGl-ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ..++|+|+|+. ...         .....+..||.++++++.+.. .......+.+.++...    ..++.+|+|++|..
T Consensus        68 yD~viiD~p~~~~~~---------~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~  133 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE---------DLEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG----NNRFRILLTIIPPY  133 (209)
T ss_dssp             CSEEEEEEECCCSSS---------HHHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC----SSSEEEEECSBCCT
T ss_pred             CCEEEEeCCCCcCcH---------HHHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc----CCCEEEEEEecCCc
Confidence            47999999986 332         234556789999999987632 2334444555565532    45688999999975


Q ss_pred             C-C--CCchHHHHhCC
Q 014655          406 E-M--YDDSSSRQGIG  418 (421)
Q Consensus       406 ~-~--~e~~~~l~~lG  418 (421)
                      . .  ++..+.++++|
T Consensus       134 ~~~~~~~~~~~l~~~g  149 (209)
T 3cwq_A          134 PSKDGDEARQLLTTAG  149 (209)
T ss_dssp             TSCHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHcC
Confidence            4 2  22334455554

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=92.69  E-value=0.042  Score=49.79  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.++|||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999763

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.64  E-value=0.027  Score=53.36  Aligned_cols=29  Identities=28%  Similarity=0.268  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...--++|+|+.+||||||++.|++-.
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           27 DLNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34444478999999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=92.61  E-value=0.045  Score=46.63  Aligned_cols=19  Identities=26%  Similarity=0.545  Sum_probs=17.9

Q ss_pred             eecccCCCCCChhHHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAI  292 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaL  292 (421)
                      -|+|+|+|+|||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4889999999999999999

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=92.56  E-value=0.038  Score=49.81  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=19.7

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -++|+|+++||||||++.|++
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999987

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=92.51  E-value=0.03  Score=53.41  Aligned_cols=29  Identities=24%  Similarity=0.264  Sum_probs=23.7

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...--++|+|+.+||||||++.|++-.
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           29 VINEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33444478999999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=92.46  E-value=0.045  Score=52.07  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|+++||||||++.|.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            6899999999999999999874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=92.46  E-value=0.05  Score=46.72  Aligned_cols=22  Identities=27%  Similarity=0.141  Sum_probs=19.8

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|.++|||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=92.42  E-value=0.048  Score=49.42  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+|+|.++||||||++.|.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=92.37  E-value=0.046  Score=48.85  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=19.8

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .|+|+|.++|||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999987

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=92.36  E-value=0.26  Score=50.84  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=19.1

Q ss_pred             hceecccCCCCCChhHHHHHHh
Q 014655          272 VADVGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt  293 (421)
                      +.-|+++|.+++|||+|+|.|.
T Consensus        67 v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           67 VVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCchhHHHHHHH
Confidence            4568899999999999999765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=92.35  E-value=0.05  Score=47.72  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...++|+|++|+|||||++++.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=92.32  E-value=0.049  Score=48.89  Aligned_cols=22  Identities=36%  Similarity=0.523  Sum_probs=19.9

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|+++||||||.+.|.+.
T Consensus        27 ~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           27 VIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.28  E-value=0.032  Score=53.28  Aligned_cols=29  Identities=34%  Similarity=0.385  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++. .-.++|+|+.+||||||++.|++..
T Consensus        26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            4455 5579999999999999999999864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=92.16  E-value=0.058  Score=46.65  Aligned_cols=21  Identities=29%  Similarity=0.359  Sum_probs=19.3

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -|.|+|.|+|||||+.+.|..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            478999999999999999986

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.08  E-value=0.058  Score=48.29  Aligned_cols=21  Identities=38%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .|+|+|.++|||||+.+.|.+
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.01  E-value=0.025  Score=55.43  Aligned_cols=28  Identities=32%  Similarity=0.338  Sum_probs=23.2

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++..-.|+|||+.+||||||++.|.+-.
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            3344479999999999999999998853

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=91.88  E-value=0.059  Score=48.20  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.++||||||.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=91.74  E-value=0.06  Score=52.62  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.5

Q ss_pred             hceecccCCCCCChhHHHHHHhc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..-|+|+|.++||||||++.|.+
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHHh
Confidence            34689999999999999999977

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.61  E-value=0.05  Score=53.87  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ..+++|+|.++||||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.57  E-value=0.046  Score=54.92  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...--++|+|+.+||||||++.|.+-.
T Consensus        50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           50 HVPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            33444468999999999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=91.57  E-value=0.076  Score=55.54  Aligned_cols=32  Identities=31%  Similarity=0.235  Sum_probs=25.8

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.+.++..-.|+|+|.++||||||+++|++.-
T Consensus       253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            33445566679999999999999999998754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=91.52  E-value=0.074  Score=46.54  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..|+|+|.|+|||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=91.46  E-value=0.076  Score=46.86  Aligned_cols=21  Identities=38%  Similarity=0.588  Sum_probs=19.4

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .|+|+|.++|||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            488999999999999999976

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=91.46  E-value=0.23  Score=46.56  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=20.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...|.|.|+||+|||+|++++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999999764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=91.45  E-value=0.077  Score=46.06  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|.|+|+++|||||+.++|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999999864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=91.41  E-value=0.083  Score=50.06  Aligned_cols=28  Identities=21%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             HHhhh---hceecccCCCCCChhHHHHHHhc
Q 014655          267 LILRV---VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       267 leLk~---i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      +.++.   ...|+|+|+++|||||+.+.|..
T Consensus        40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             HTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            44555   66899999999999999999976

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.31  E-value=0.065  Score=55.34  Aligned_cols=31  Identities=19%  Similarity=0.191  Sum_probs=26.1

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.+.++....|+|+|..|||||||++.|++-
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4455566678999999999999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=91.30  E-value=0.067  Score=46.32  Aligned_cols=22  Identities=36%  Similarity=0.289  Sum_probs=20.2

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -++|+|.+++|||||++++.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=91.27  E-value=0.077  Score=46.29  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|+|+|+|||||+.+.|...
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            36899999999999999999753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=91.15  E-value=0.038  Score=49.38  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.++||||||++.|.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.14  E-value=0.046  Score=52.98  Aligned_cols=29  Identities=24%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+...-.++|+|..+||||||++.|++-.
T Consensus        60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            33444478999999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=91.01  E-value=0.083  Score=46.09  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|.|.|.|+|||||+.+.|...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=90.99  E-value=0.09  Score=45.86  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .|+|.|.|+|||||+.+.|..
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=90.99  E-value=0.079  Score=47.53  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.++||||||.+.|.+.
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=90.88  E-value=0.057  Score=53.96  Aligned_cols=30  Identities=33%  Similarity=0.483  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+|||||||+.|.+-.
T Consensus        36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           36 FQIREGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344444468999999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=90.84  E-value=0.059  Score=53.92  Aligned_cols=30  Identities=23%  Similarity=0.247  Sum_probs=24.3

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--++|+|+.+||||||++.|.+-.
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            344444468999999999999999999864

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=90.81  E-value=0.5  Score=42.92  Aligned_cols=69  Identities=12%  Similarity=0.086  Sum_probs=45.7

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++|+|+|+....         .....+..||.+++|++.+. ........+.+.++.++.  ....+.+|+|++|...
T Consensus       119 yD~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~v~N~~~~~~  186 (245)
T 3ea0_A          119 YDYIIVDFGASIDH---------VGVWVLEHLDELCIVTTPSL-QSLRRAGQLLKLCKEFEK--PISRIEIILNRADTNS  186 (245)
T ss_dssp             CSEEEEEEESSCCT---------THHHHGGGCSEEEEEECSSH-HHHHHHHHHHHHHHTCSS--CCSCEEEEEESTTSCT
T ss_pred             CCEEEEeCCCCCch---------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhCC--CccceEEEEecCCCCC
Confidence            36899999986532         23455788999999998753 223444555566665432  2355889999998654


Q ss_pred             C
Q 014655          407 M  407 (421)
Q Consensus       407 ~  407 (421)
                      .
T Consensus       187 ~  187 (245)
T 3ea0_A          187 R  187 (245)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=90.77  E-value=0.39  Score=44.05  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|.|+||+|||+|.+++...
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999763

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=90.69  E-value=0.063  Score=53.77  Aligned_cols=30  Identities=33%  Similarity=0.357  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+||||||++.|.+-.
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            344444468999999999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=90.68  E-value=0.087  Score=46.19  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .-|.|+|.|+|||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999975

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=90.67  E-value=0.064  Score=54.17  Aligned_cols=30  Identities=37%  Similarity=0.328  Sum_probs=24.3

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--++|+|+.+||||||++.|.+-.
T Consensus        24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            344444468999999999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=90.66  E-value=0.056  Score=54.14  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...--++|+|+.+||||||++.|.+-.
T Consensus        26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           26 SLDPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            34444468999999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=90.65  E-value=0.087  Score=52.53  Aligned_cols=22  Identities=41%  Similarity=0.366  Sum_probs=20.1

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|+++||||||+++|.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=90.63  E-value=0.091  Score=50.12  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|+||+|||||+++|.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3899999999999999999874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=90.61  E-value=0.11  Score=46.82  Aligned_cols=21  Identities=43%  Similarity=0.669  Sum_probs=19.2

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .|+|+|.|+|||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999965

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=90.53  E-value=0.095  Score=46.44  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|.|.++|||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999999875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=90.50  E-value=0.067  Score=53.77  Aligned_cols=30  Identities=27%  Similarity=0.296  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--++|+|+.+|||||||+.|.+-.
T Consensus        32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            344444468999999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=90.49  E-value=0.065  Score=53.83  Aligned_cols=30  Identities=27%  Similarity=0.246  Sum_probs=24.3

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+|||||||+.|.+-.
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            334444468999999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=90.48  E-value=0.074  Score=51.82  Aligned_cols=25  Identities=40%  Similarity=0.495  Sum_probs=21.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.-++|+|+.|||||||++.|.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4568899999999999999999753

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=90.46  E-value=0.086  Score=46.67  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.++|||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=90.46  E-value=0.099  Score=48.45  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=20.1

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|+||+|||||+++|.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=90.44  E-value=0.11  Score=46.75  Aligned_cols=22  Identities=41%  Similarity=0.567  Sum_probs=19.7

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +|+|+|.|+|||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=90.32  E-value=0.12  Score=45.46  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=22.4

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ++....|+|+|.|+|||||+.+.|...
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            344457999999999999999999764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.28  E-value=0.49  Score=45.64  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      +.+.|+|++|+|||||+++|.+
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999987

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=90.25  E-value=0.12  Score=50.14  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|+|+|.++||||||++.|.+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999873

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=90.13  E-value=0.12  Score=45.87  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=20.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|.|.|+|||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            35899999999999999999763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=90.12  E-value=0.1  Score=52.18  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-.|+|+|+++||||||+++|.+.
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999999863

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=90.10  E-value=0.45  Score=40.32  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=21.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ..|.|.|.||+|||++..+|....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999997643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=90.01  E-value=0.13  Score=44.97  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|+|+++|||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=89.99  E-value=0.13  Score=45.25  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             hhhceecccCCCCCChhHHHHHHhc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      +...-|+|+|.|+|||||+.+.|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=89.98  E-value=0.14  Score=44.00  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+|.|.++|||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=89.97  E-value=0.1  Score=46.90  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.8

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .-|+|+|.++||||||++.|.+
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=89.96  E-value=0.11  Score=46.43  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=19.1

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -++|+|.+++|||||++.|..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999874

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=89.96  E-value=0.12  Score=45.51  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=19.6

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|.|+|.++|||||+.+.|...
T Consensus        15 ~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           15 VVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999998653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=89.94  E-value=0.12  Score=48.37  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=19.7

Q ss_pred             ceecccCCCCCChhHHHHHHh
Q 014655          273 ADVGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt  293 (421)
                      ..|+|+|+++||||||++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=89.94  E-value=0.12  Score=45.19  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|.++|||||+.+.|...
T Consensus         7 ~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            7 TVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999763

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.93  E-value=0.48  Score=48.59  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||+|.+++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999999863

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=89.86  E-value=0.13  Score=44.88  Aligned_cols=21  Identities=43%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -|+|+|.|+|||||+.+.|..
T Consensus         5 ~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            5 VVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=89.79  E-value=0.95  Score=42.53  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|.|+||+|||||++++.+.
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=89.67  E-value=0.14  Score=46.45  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.|+|||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=89.61  E-value=0.077  Score=53.68  Aligned_cols=29  Identities=38%  Similarity=0.461  Sum_probs=23.6

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++..--++|+|+.+||||||++.|.+-.
T Consensus        43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            34444479999999999999999998753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=89.58  E-value=0.06  Score=53.65  Aligned_cols=29  Identities=21%  Similarity=0.208  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++..--++|+|+.+||||||++.|.+-.
T Consensus        22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           22 KVESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            34444468999999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=89.53  E-value=0.16  Score=49.51  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..++|+|+||+|||||+++|.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=89.48  E-value=0.13  Score=44.87  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -|+|.|.++|||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999976

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=89.46  E-value=0.16  Score=53.43  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=21.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .++|+|..+||||||++.|++..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=89.45  E-value=0.15  Score=45.68  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.-|+|+|++|+|||||+.+|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999998753

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=89.43  E-value=0.13  Score=48.47  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      -|+|+|+|++|||||+++|.+.-
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            48999999999999999998753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=89.40  E-value=0.15  Score=44.60  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..|.|+|.++|||||+.+.|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4688999999999999999974

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=89.36  E-value=0.13  Score=52.52  Aligned_cols=22  Identities=32%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|+++||||||+++|.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=89.24  E-value=0.14  Score=49.84  Aligned_cols=27  Identities=33%  Similarity=0.513  Sum_probs=22.1

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ++..--|+|+|..|||||||++.|.+.
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            334446899999999999999999763

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=89.23  E-value=0.14  Score=44.80  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.2

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -.+|+|..++|||||+.+|...
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999998653

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=89.11  E-value=1.1  Score=41.57  Aligned_cols=65  Identities=11%  Similarity=0.102  Sum_probs=45.2

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++|+|+|+....         .....+..||.+++|+..+. ........+.+.++.+..   +.++.+|+|+++.
T Consensus       145 yD~viiD~pp~~~~---------~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~---~~~~~vv~N~~~~  209 (267)
T 3k9g_A          145 YDYIVIDTNPSLDV---------TLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNL---FLPIFLIITRFKK  209 (267)
T ss_dssp             CSEEEEEECSSCSH---------HHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTC---CCCEEEEEEEECT
T ss_pred             CCEEEEECcCCccH---------HHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhc---cCCEEEEEecccC
Confidence            36899999985432         23455677999999999854 334555666667776542   4577899999953

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=89.11  E-value=0.053  Score=54.05  Aligned_cols=30  Identities=23%  Similarity=0.400  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--++|+|+.+||||||++.|.+-.
T Consensus        26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           26 INIENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344444478999999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=89.06  E-value=0.059  Score=48.20  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.3

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|.++|||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3789999999999999999653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=88.93  E-value=0.14  Score=45.57  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .-|+|.|.++|||||+.+.|..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.90  E-value=0.83  Score=47.23  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||+|.+++.+.
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CceEeeCCCCCcHHHHHHHHHhc
Confidence            45899999999999999999863

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=88.89  E-value=0.15  Score=45.99  Aligned_cols=21  Identities=38%  Similarity=0.453  Sum_probs=19.3

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      +|+|+|.|+|||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=88.86  E-value=0.17  Score=47.60  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|+|.|+|||||+.+.|...
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=88.81  E-value=0.17  Score=45.06  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+|+|.|+|||||+.+.|...
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=88.81  E-value=0.13  Score=47.37  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=20.5

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|..+||||||++.|.+.
T Consensus        22 ~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           22 TVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=88.77  E-value=0.15  Score=45.49  Aligned_cols=22  Identities=36%  Similarity=0.360  Sum_probs=20.0

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .-|+|.|.++|||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=88.77  E-value=0.15  Score=50.10  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.5

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|.++||||||++.|.+.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=88.76  E-value=0.18  Score=43.39  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+|.|.++|||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=88.75  E-value=0.16  Score=46.32  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.|+|||||+.+.|...
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=88.73  E-value=0.12  Score=54.70  Aligned_cols=30  Identities=30%  Similarity=0.321  Sum_probs=24.6

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..-.++++|+.|||||||++.|.+-.
T Consensus       364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          364 FSIPQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344445589999999999999999998853

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=88.70  E-value=0.14  Score=48.71  Aligned_cols=26  Identities=19%  Similarity=0.089  Sum_probs=21.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...--++|+|.|++|||||++.|...
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            33346899999999999999998753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=88.63  E-value=0.17  Score=44.21  Aligned_cols=22  Identities=41%  Similarity=0.613  Sum_probs=19.6

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      +.|+|+|.|+|||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=88.53  E-value=0.87  Score=42.45  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|.|.||+|||+|..++...
T Consensus        65 ~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           65 VSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            46889999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=88.47  E-value=0.15  Score=44.36  Aligned_cols=23  Identities=13%  Similarity=0.115  Sum_probs=16.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|.|+|||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999999753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=88.31  E-value=0.17  Score=53.16  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=21.1

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      -++|+|+.+||||||++.|++..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            58999999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=88.30  E-value=0.17  Score=44.71  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.++|||||+.+.|...
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC
Confidence            36899999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=88.29  E-value=0.17  Score=44.05  Aligned_cols=23  Identities=35%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|+|+|.|+|||||+.+.|...
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999753

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.24  E-value=0.94  Score=46.28  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=19.9

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|.|.|+||+|||+|.+++.+.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999863

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=88.22  E-value=0.18  Score=45.68  Aligned_cols=21  Identities=14%  Similarity=0.208  Sum_probs=19.7

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -++|+|.+++|||||+..|+.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999999987

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=88.21  E-value=0.11  Score=55.05  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..-.++++|+.|||||||++.|.+-.
T Consensus       376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            344444589999999999999999998853

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=88.16  E-value=0.13  Score=50.94  Aligned_cols=30  Identities=30%  Similarity=0.411  Sum_probs=24.7

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.+...-.++|+|..+||||||++.|++..
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            334455589999999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=88.09  E-value=0.22  Score=44.89  Aligned_cols=26  Identities=35%  Similarity=0.424  Sum_probs=21.5

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhc
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      +....-|+|+|.++|||||+.+.|..
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            34445689999999999999999865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=88.04  E-value=0.19  Score=45.37  Aligned_cols=22  Identities=36%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .-|+|+|.++|||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999976

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=87.94  E-value=0.11  Score=54.73  Aligned_cols=30  Identities=37%  Similarity=0.407  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..-.++++|+.|||||||++.|.+-.
T Consensus       364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          364 LKIPAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            344444589999999999999999998853

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=87.78  E-value=0.2  Score=44.67  Aligned_cols=21  Identities=24%  Similarity=0.150  Sum_probs=19.5

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -++|+|.+++|||||+..|..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999986

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=87.74  E-value=0.21  Score=50.24  Aligned_cols=25  Identities=28%  Similarity=0.183  Sum_probs=21.3

Q ss_pred             hhceecccCCCCCChhHHHHHHhcC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...-|+|+|++++|||||+++|.+.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3346899999999999999999863

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=87.68  E-value=1.4  Score=42.64  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||+|.+++.+.
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            35889999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=87.64  E-value=0.24  Score=43.99  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|.|.++|||||+.+.|...
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=87.62  E-value=0.23  Score=52.94  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .++|+|..+||||||++.|++..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68999999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=87.61  E-value=0.22  Score=42.60  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|+|.||+|||+|++++...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=87.58  E-value=0.18  Score=45.70  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|+|.|+|||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=87.58  E-value=0.1  Score=48.76  Aligned_cols=22  Identities=45%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             ecccCCCCCChhHHHHHHhcCC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++|+|+.+||||||+++|++..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            5899999999999999998753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=87.45  E-value=0.21  Score=48.20  Aligned_cols=22  Identities=23%  Similarity=0.116  Sum_probs=19.6

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .-|+|+|.++||||||.+.|..
T Consensus        32 ~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           32 LFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=87.43  E-value=0.24  Score=44.94  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|+|.|+|||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=87.40  E-value=0.22  Score=53.24  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=21.2

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      -++|+|+.|||||||++.|++..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=87.38  E-value=0.25  Score=45.15  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|+|+|.|+|||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999753

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.25  E-value=1.2  Score=45.71  Aligned_cols=22  Identities=36%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|.|.|+||+|||+|.+++.+.
T Consensus       218 GvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          218 GVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             EEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCceECCCCchHHHHHHHHHHH
Confidence            5899999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=87.24  E-value=0.25  Score=42.52  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -.|+|.|.++|||||+.+.|...
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=87.13  E-value=0.23  Score=47.62  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|+|+|+||||||.++|...
T Consensus        34 ~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999754

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=87.12  E-value=1  Score=42.63  Aligned_cols=66  Identities=18%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLP  405 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl~  405 (421)
                      ..++|+|||+.....        ........||.+|+|+.... ..........+.|+.     .+.+++ +|+|++|..
T Consensus       192 yD~VIIDtpp~~~~~--------d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~-----~~~~~~GvVlN~~~~~  257 (271)
T 3bfv_A          192 YNFVIIDTPPVNTVT--------DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA-----TGAKLLGVVLNRMPKD  257 (271)
T ss_dssp             CSEEEEECCCTTTCS--------HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT-----TTCEEEEEEEEEECC-
T ss_pred             CCEEEEeCCCCchHH--------HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh-----CCCCEEEEEEeCCcCC
Confidence            369999999975421        11223356899999999864 345555666666664     234554 899999864


Q ss_pred             C
Q 014655          406 E  406 (421)
Q Consensus       406 ~  406 (421)
                      .
T Consensus       258 ~  258 (271)
T 3bfv_A          258 K  258 (271)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=87.09  E-value=0.22  Score=49.72  Aligned_cols=27  Identities=33%  Similarity=0.513  Sum_probs=22.2

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcC
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ++..--|+|||..+||||||++.|.+.
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence            334446899999999999999999763

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=87.04  E-value=0.22  Score=51.75  Aligned_cols=27  Identities=33%  Similarity=0.247  Sum_probs=22.4

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+.. --++|+|+.+||||||++.|.+-
T Consensus        26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           26 DFDE-LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             ECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence            3444 46899999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=86.91  E-value=0.24  Score=46.46  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.3

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|+|+|+++||||||.+.|...
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            4789999999999999999753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=86.85  E-value=0.31  Score=45.25  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             hhceecccCCCCCChhHHHHHHhc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ....|+|.|.|+|||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999975

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.82  E-value=1.3  Score=44.99  Aligned_cols=23  Identities=39%  Similarity=0.550  Sum_probs=20.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||+|.+++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            35889999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=86.75  E-value=0.18  Score=47.11  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=20.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|+|.|+|||||+.+.|...
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=86.73  E-value=0.25  Score=45.76  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|+|+||+|||||+++|.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.64  E-value=0.92  Score=46.45  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||+|.+++.+.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=86.56  E-value=0.27  Score=42.41  Aligned_cols=19  Identities=42%  Similarity=0.548  Sum_probs=17.4

Q ss_pred             ecccCCCCCChhHHHHHHh
Q 014655          275 VGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt  293 (421)
                      .+|+|+.++|||||+.+|.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999999985

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=86.55  E-value=0.2  Score=51.34  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=24.7

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.+...-.++|+|..+||||||++.|.+..
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            344455589999999999999999999864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=86.47  E-value=0.11  Score=54.74  Aligned_cols=29  Identities=31%  Similarity=0.421  Sum_probs=23.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++..-.++++|+.|||||||++.|.+--
T Consensus       363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          363 SIEKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34444479999999999999999998753

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=86.44  E-value=2  Score=39.79  Aligned_cols=65  Identities=14%  Similarity=-0.012  Sum_probs=40.4

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl  404 (421)
                      +.++|+|+|+.....      .... ..+..+|.+++|+..... .......+.+.++..     +.+++ +|+|+.|.
T Consensus       129 yD~ViID~pp~~~~~------~~~~-~~~~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~  194 (262)
T 2ph1_A          129 LDHLLIDLPPGTGDA------PLTV-MQDAKPTGVVVVSTPQEL-TAVIVEKAINMAEET-----NTSVLGLVENMSYF  194 (262)
T ss_dssp             CSEEEEECCSSSSSH------HHHH-HHHHCCSEEEEEECSSSC-CHHHHHHHHHHHHTT-----TCCEEEEEETTCCE
T ss_pred             CCEEEEECcCCCchH------HHHH-HhhccCCeEEEEecCccc-hHHHHHHHHHHHHhC-----CCCEEEEEECCCcc
Confidence            368999999865321      0111 122368999999987643 344555555556542     45666 89999884

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=86.30  E-value=1.2  Score=40.21  Aligned_cols=67  Identities=15%  Similarity=0.080  Sum_probs=43.6

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++|+|+|+....         .....+..+|.+++|++... ........+.+.++...    ....-+|+|+.|...
T Consensus       112 yD~viiD~~~~~~~---------~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~  177 (237)
T 1g3q_A          112 FDFILIDCPAGLQL---------DAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKKAG----LAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSSH---------HHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHHTT----CEEEEEEEEEETSCT
T ss_pred             CCEEEEECCCCcCH---------HHHHHHHHCCeEEEEecCCc-ccHHHHHHHHHHHHhCC----CceEEEEEecCCccc
Confidence            36899999985431         34456788999999998753 22334444555555531    244678999998654


Q ss_pred             C
Q 014655          407 M  407 (421)
Q Consensus       407 ~  407 (421)
                      .
T Consensus       178 ~  178 (237)
T 1g3q_A          178 R  178 (237)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=86.20  E-value=1.7  Score=42.92  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|.|.||+|||+|..+|...
T Consensus       149 ~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999764

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.07  E-value=0.46  Score=49.24  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||||++++...
T Consensus        78 ~~lLL~GppGtGKTtla~~la~~  100 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVAQE  100 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=86.01  E-value=0.14  Score=54.16  Aligned_cols=29  Identities=28%  Similarity=0.332  Sum_probs=23.7

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++..-.++++|+.+||||||++.|.+--
T Consensus       365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          365 SVKPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            33444479999999999999999998753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=85.98  E-value=0.29  Score=48.61  Aligned_cols=19  Identities=42%  Similarity=0.531  Sum_probs=17.7

Q ss_pred             ecccCCCCCChhHHHHHHh
Q 014655          275 VGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt  293 (421)
                      .+|+|..+||||||+++|+
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999987

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=85.92  E-value=0.23  Score=52.10  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=22.7

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ..-.++|+|+.+||||||++.|++..
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34568999999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=85.82  E-value=0.34  Score=44.41  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|+|.|+|||||+.+.|...
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=85.66  E-value=0.34  Score=44.30  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.5

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|.|+|+|+|||+|....|+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=85.63  E-value=0.31  Score=45.13  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..-|+|.|.++|||||+++.|...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            346899999999999999999764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=85.29  E-value=0.25  Score=51.91  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=22.8

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +..--++|+|+.+||||||++.|++..
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            334468999999999999999999864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=85.22  E-value=0.35  Score=44.96  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=21.7

Q ss_pred             hhhhc---eecccCCCCCChhHHHHHHhcC
Q 014655          269 LRVVA---DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       269 Lk~i~---~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ++.++   .+.+.|+||+||||+..+|.+.
T Consensus        52 ~~~iPkkn~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           52 LKGTPKKNCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             HHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             HhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence            34455   6899999999999999888653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=85.04  E-value=0.35  Score=45.73  Aligned_cols=21  Identities=29%  Similarity=0.359  Sum_probs=19.2

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -|.|+|.|+|||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999986

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=84.76  E-value=0.36  Score=43.24  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...|.|.|.||+|||||+.++...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=84.76  E-value=0.28  Score=52.31  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=22.5

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ..-.++|+|+.+||||||++.|++..
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468999999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=84.65  E-value=0.39  Score=43.43  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|+|+|.++|||||+.+.|...
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=84.53  E-value=0.39  Score=44.59  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..|+|.|.++|||||+.+.|..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=84.52  E-value=0.37  Score=42.55  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=19.4

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .|+|.|.++|||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=84.45  E-value=1.5  Score=36.91  Aligned_cols=24  Identities=17%  Similarity=0.069  Sum_probs=20.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...|.|.|.||+|||++.+++...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            346899999999999999999764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=84.37  E-value=0.18  Score=58.58  Aligned_cols=29  Identities=28%  Similarity=0.377  Sum_probs=24.3

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.++-.-+|||||.+|||||||++.|.+-
T Consensus      1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1100 FSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             EEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence            44455558999999999999999999874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=84.30  E-value=0.39  Score=42.56  Aligned_cols=23  Identities=39%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.|.|.+|+|||+|+.++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=84.27  E-value=0.39  Score=51.28  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      -++|+|+.+||||||++.|++..
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            37999999999999999999864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=84.20  E-value=0.8  Score=45.06  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|.|.|+||+|||+|.+++...
T Consensus        86 ~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=84.06  E-value=0.3  Score=41.74  Aligned_cols=24  Identities=21%  Similarity=0.393  Sum_probs=20.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...|.|+|.|++|||+|+.++...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999998764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=83.81  E-value=0.49  Score=41.73  Aligned_cols=22  Identities=14%  Similarity=0.262  Sum_probs=19.4

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -+.|.|.+++|||||+.++...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=83.73  E-value=0.36  Score=45.48  Aligned_cols=24  Identities=29%  Similarity=0.194  Sum_probs=20.3

Q ss_pred             hhceecccCCCCCChhHHHHHHhc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..--++|+|.+++|||||+..|..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            334688999999999999998875

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=83.61  E-value=2.4  Score=38.61  Aligned_cols=68  Identities=16%  Similarity=0.058  Sum_probs=41.3

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC----CCCCCCEEEEEeCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----DYLERPFIVVLNKI  402 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~----~l~~kP~IIVlNK~  402 (421)
                      ..++|+|+|+-..         ......+..||.+++|++.+. ........+.+.++....    ......+.+|+|+.
T Consensus       114 yD~viiD~p~~~~---------~~~~~~l~~ad~vi~v~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~  183 (260)
T 3q9l_A          114 FEFIVCDSPAGIE---------TGALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRY  183 (260)
T ss_dssp             CSEEEEECCSSSS---------HHHHHHHHTCSEEEEEECSSH-HHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred             CCEEEEcCCCCCC---------HHHHHHHHhCCEEEEEecCCh-hHHHHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence            4689999998442         234556778999999998753 223333334444433210    00124678999998


Q ss_pred             CC
Q 014655          403 DL  404 (421)
Q Consensus       403 Dl  404 (421)
                      |.
T Consensus       184 ~~  185 (260)
T 3q9l_A          184 NP  185 (260)
T ss_dssp             CH
T ss_pred             Cc
Confidence            84

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=83.31  E-value=3.1  Score=39.69  Aligned_cols=67  Identities=18%  Similarity=0.083  Sum_probs=45.1

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++|+|||......        ........||.+|+|++... ..........+.|+...    ...+-+|+|++|...
T Consensus       202 yD~VIIDtpp~~~~~--------da~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g----~~~~GvVlN~v~~~~  268 (286)
T 3la6_A          202 YDLVLIDTPPILAVT--------DAAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG----IPVKGVILNSIFRRA  268 (286)
T ss_dssp             CSEEEEECCCTTTCT--------HHHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT----CCCCEEEEEEECCCC
T ss_pred             CCEEEEcCCCCcchH--------HHHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC----CCEEEEEEcCccccc
Confidence            359999999975421        12334567999999999764 33555666666776633    234578999998654

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=83.29  E-value=2.6  Score=40.35  Aligned_cols=67  Identities=10%  Similarity=0.015  Sum_probs=43.3

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++|+|||+.....        ...-....||.+|+|+..... .........+.|+....    ...-+|+|++|...
T Consensus       214 yD~VIIDtpp~~~~~--------d~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~~~----~~~GvVlN~~~~~~  280 (299)
T 3cio_A          214 YDLVIVDTPPMLAVS--------DAAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQAGV----NIKGAILNGVIKRA  280 (299)
T ss_dssp             CSEEEEECCCTTTCT--------HHHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHTTC----CCCCEEEEECCCCC
T ss_pred             CCEEEEcCCCCchhH--------HHHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhCCC----CeEEEEEeCCccCC
Confidence            369999999975421        112234679999999997653 34555666666766321    22347899998653

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=83.21  E-value=1.8  Score=44.22  Aligned_cols=25  Identities=32%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +..|.|.|+||+|||||.++|.+.-
T Consensus        50 ~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           50 LHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Confidence            3568999999999999999998653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=83.10  E-value=0.48  Score=43.43  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..|+|+|.+++||||+.+.|..
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999975

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=83.02  E-value=0.93  Score=40.93  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=41.9

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID  403 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D  403 (421)
                      ..++|+|+|+....         .....+..||.+++|++.+. ........+.+.+..+..    ..+.+|+|+.+
T Consensus       132 yD~viiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~~~----~~~~~v~N~~~  194 (254)
T 3kjh_A          132 KEAVVMDMGAGIEH---------LTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDLGI----KKVRYVINKVR  194 (254)
T ss_dssp             CSEEEEEECTTCTT---------CCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHHTC----SCEEEEEEEEC
T ss_pred             CCEEEEeCCCcccH---------HHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHcCC----ccEEEEEeCCC
Confidence            36899999985432         12345688999999998753 223444445555555431    45789999998

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=82.94  E-value=0.43  Score=45.46  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.8

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..|+|.|.++|||||+.+.|..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999973

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=82.90  E-value=0.53  Score=44.10  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..|+|+|+++|||||+.+.|..
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999974

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=82.83  E-value=0.48  Score=48.49  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..|.++|+|+|||||+.+.|...
T Consensus        40 ~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           40 TLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=82.80  E-value=2  Score=43.63  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||+|..+|.+.
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999864

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=82.71  E-value=0.36  Score=47.44  Aligned_cols=24  Identities=8%  Similarity=0.023  Sum_probs=20.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...+.|.|+||+|||++++++...
T Consensus        45 ~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           45 NKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999998754

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=82.13  E-value=1.5  Score=42.18  Aligned_cols=21  Identities=14%  Similarity=0.279  Sum_probs=18.8

Q ss_pred             ecccCCCCCChhHHHHHHhcC
Q 014655          275 VGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.|.|.+|+|||||+.++...
T Consensus        41 ~ll~G~~G~GKT~la~~la~~   61 (373)
T 1jr3_A           41 YLFSGTRGVGKTSIARLLAKG   61 (373)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=82.05  E-value=0.25  Score=55.59  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=26.7

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.+.++..-.|+|+|..|||||||++.|++..
T Consensus       692 VSl~I~~GeivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred             cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33556666689999999999999999999864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=81.98  E-value=0.61  Score=43.74  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=20.0

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .++||+|.|+|||||+...|..
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            4789999999999999999875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=81.71  E-value=0.55  Score=47.40  Aligned_cols=22  Identities=41%  Similarity=0.502  Sum_probs=19.5

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|.|+|+|+|||||+.+.|...
T Consensus       260 lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          260 VVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             EEEEESCTTSSHHHHHHHHTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4788999999999999999764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=81.68  E-value=0.57  Score=40.91  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|.|.|.+++|||+|+.++...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=81.68  E-value=0.56  Score=43.44  Aligned_cols=22  Identities=41%  Similarity=0.554  Sum_probs=19.8

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|.|.|+||+|||+|+++|.+.
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999999764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=81.56  E-value=0.61  Score=42.16  Aligned_cols=19  Identities=42%  Similarity=0.548  Sum_probs=17.1

Q ss_pred             ecccCCCCCChhHHHHHHh
Q 014655          275 VGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt  293 (421)
                      .+|+|..++|||||+.+|.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999999985

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=81.43  E-value=0.65  Score=42.98  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +...-|.|+|+|+|||+|....|+..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            33334678899999999999998753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=81.40  E-value=0.55  Score=42.47  Aligned_cols=20  Identities=30%  Similarity=0.331  Sum_probs=17.2

Q ss_pred             eecccCCCCCChhHHHHHHh
Q 014655          274 DVGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt  293 (421)
                      -++|+|.|++|||||+..+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999977664

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=81.32  E-value=0.12  Score=51.40  Aligned_cols=26  Identities=31%  Similarity=0.286  Sum_probs=21.6

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHh
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt  293 (421)
                      +++... .++|+|..+|||||||++|.
T Consensus        56 l~~~~G-~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           56 LELGGG-FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred             EecCCC-cEEEECCCCCCHHHHHHHHH
Confidence            445555 78999999999999999984

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=80.99  E-value=0.39  Score=50.68  Aligned_cols=25  Identities=40%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ....|+|+|+++||||||+++|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            3456899999999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=80.88  E-value=0.59  Score=44.69  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||+|+++|.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=80.79  E-value=0.39  Score=54.11  Aligned_cols=28  Identities=36%  Similarity=0.519  Sum_probs=23.0

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+...-.++|+|..|||||||++.|.+.
T Consensus       457 ~I~~Ge~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          457 RLKRARRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3444447999999999999999999854

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=80.78  E-value=1.7  Score=40.12  Aligned_cols=70  Identities=13%  Similarity=0.046  Sum_probs=41.3

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC-CCCCCE-EEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPF-IVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kP~-IIVlNK~Dl  404 (421)
                      ..++|+|+|+....         .....+..||.+++|++.+.. .......+.+.++..... ..+.++ -+|+|+.|.
T Consensus       112 yD~iiiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~  181 (257)
T 1wcv_1          112 YDLVLLDAPPSLSP---------LTLNALAAAEGVVVPVQAEYY-ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG  181 (257)
T ss_dssp             CSEEEEECCSSCCH---------HHHHHHHHCSEEEEEEESSTH-HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred             CCEEEEeCCCCCCH---------HHHHHHHHCCeEEEEecCchH-HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence            46999999986432         123445679999999997642 233333344444332100 023455 489999986


Q ss_pred             CC
Q 014655          405 PE  406 (421)
Q Consensus       405 ~~  406 (421)
                      ..
T Consensus       182 ~~  183 (257)
T 1wcv_1          182 RT  183 (257)
T ss_dssp             TC
T ss_pred             Cc
Confidence            43

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=80.72  E-value=2.7  Score=39.95  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=17.0

Q ss_pred             ecccCCCCCChhHHHHHHhcC
Q 014655          275 VGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.+.|+||+|||+++.++.+.
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            345566999999999999764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=80.63  E-value=0.83  Score=43.73  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..+.|.|+||+|||||++++.+.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999999764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=80.48  E-value=0.35  Score=55.90  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=0.0

Q ss_pred             hhhhHHhhhhceecccCCCCCChhHHHHHHhc
Q 014655          263 VSLELILRVVADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       263 ~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..+.++++..-.++|||..|||||||++.|.+
T Consensus       407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g  438 (1284)
T 3g5u_A          407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR  438 (1284)
T ss_dssp             EEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHHhC

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=80.33  E-value=1.3  Score=40.71  Aligned_cols=66  Identities=18%  Similarity=0.204  Sum_probs=42.6

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++|+|+|+....         .....+..+|.+++|++.... ...+...+.+.++...    ....-+|+|++|...
T Consensus       111 yD~viiD~~~~~~~---------~~~~~~~~ad~vi~v~~~~~~-~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~  176 (263)
T 1hyq_A          111 TDILLLDAPAGLER---------SAVIAIAAAQELLLVVNPEIS-SITDGLKTKIVAERLG----TKVLGVVVNRITTLG  176 (263)
T ss_dssp             CSEEEEECCSSSSH---------HHHHHHHHSSEEEEEECSSHH-HHHHHHHHHHHHHHHT----CEEEEEEEEEECTTT
T ss_pred             CCEEEEeCCCCCCh---------HHHHHHHHCCEEEEEeCCChh-HHHHHHHHHHHHHhcC----CCeeEEEEccCCccc
Confidence            36899999975431         234556789999999986532 2334444555565532    244678999998644

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=80.12  E-value=0.36  Score=55.98  Aligned_cols=29  Identities=31%  Similarity=0.430  Sum_probs=24.6

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ++++..-.|+|||..|+|||||++.|.+.
T Consensus       439 l~i~~G~~vaivG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          439 LRVNAGQTVALVGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             EEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred             EeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence            44555568999999999999999999875

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=80.07  E-value=0.71  Score=44.68  Aligned_cols=22  Identities=27%  Similarity=0.441  Sum_probs=20.1

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|.|.|++++|||||++++.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	421
d1jala1	278	c.37.1.8 (A:1-278) YchF GTP-binding protein N-term	3e-34
d1wxqa1	319	c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr	4e-31
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	3e-27
d1ni3a1	296	c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter	6e-27
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-25
d1lnza1	157	b.117.1.1 (A:1-157) Obg GTP-binding protein N-term	1e-19
d1udxa1	156	b.117.1.1 (A:1-156) Obg GTP-binding protein N-term	3e-19
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-11
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-10
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-09
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-08
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-07
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-07
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	2e-06
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	4e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	6e-05
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	0.001
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	0.001
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.001

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

 Score =  126 bits (318), Expect = 3e-34
 Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 19/138 (13%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDPTLG--AEKYSSEAT- 330
            G+VGLPN GKSTL  A+T A  + A+YPF T+ PN G +   DP L   AE    E   
Sbjct: 5   CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64

Query: 331 -----LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVND 375
                  D+ GL+ GA  G+GLG  FL ++R T  + HV+               +P++D
Sbjct: 65  PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDD 124

Query: 376 YRTVKEELRMYNPDYLER 393
             T+  EL + + D  ER
Sbjct: 125 IDTINTELALADLDSCER 142

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  119 bits (298), Expect = 4e-31
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 27/161 (16%)

Query: 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-----------RLDGDPTLGA 322
           ++G+VG PN GKST  +A T    +IA+YPFTT+  N+G            L   P    
Sbjct: 2   EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61

Query: 323 EKYSS-----EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------- 369
            +Y +        + D+ GL+ GAH G+GLG  FL  LR    L+HV+DA          
Sbjct: 62  YEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQP 121

Query: 370 ---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407
               +PV D   ++ E+  +    L + +     +I L ++
Sbjct: 122 TDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKI 162

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score =  105 bits (261), Expect = 3e-27
 Identities = 72/142 (50%), Positives = 91/142 (64%), Gaps = 10/142 (7%)

Query: 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331
           +ADVGLVG P+ GKSTLL+ ++ AKP IADY FTTL+PNLG                  +
Sbjct: 1   LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM-------VETDDGRSFVM 53

Query: 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR---TVKEELRMYNP 388
           ADLPGLIEGAH G GLG  FLRH+ RTR++VHVID +     + Y    T+ +EL  YN 
Sbjct: 54  ADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL 113

Query: 389 DYLERPFIVVLNKIDLPEMYDD 410
              ERP I+V NK+D+PE  ++
Sbjct: 114 RLTERPQIIVANKMDMPEAAEN 135

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  107 bits (267), Expect = 6e-27
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 275 VGLVGLPNAGKSTLLAAITHA-KPDIADYPFTTLMPNLG-------RLD--GDPTLGAEK 324
            G+VG+PN GKST   AIT +   + A+YP+ T+ P          R D   +      +
Sbjct: 13  TGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSR 72

Query: 325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVN 374
             +  T+ D+ GL +GA  G GLG  FL H+R    +  V+ A  +          +P+ 
Sbjct: 73  VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIR 132

Query: 375 DYRTVKEELRMYNPDYLERPFIVVLNKI 402
           D   + +EL + + +++E+    +    
Sbjct: 133 DLSIIVDELLIKDAEFVEKHLEGLRKIT 160

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 99.7 bits (247), Expect = 3e-25
 Identities = 73/134 (54%), Positives = 94/134 (70%), Gaps = 8/134 (5%)

Query: 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331
           +ADVGLVG PNAGKS+LLAA+T A P IA YPFTTL PNLG ++              TL
Sbjct: 1   IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE-------VSEEERFTL 53

Query: 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL 391
           AD+PG+IEGA  GKGLG  FLRH+ RTR+L++V+D AA+ P+    T+++E+  Y+P  L
Sbjct: 54  ADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLD-AADEPLKTLETLRKEVGAYDPALL 112

Query: 392 ERPFIVVLNKIDLP 405
            RP +V LNK+DL 
Sbjct: 113 RRPSLVALNKVDLL 126

>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 157

class: All beta proteins
fold: Obg-fold
superfamily: Obg GTP-binding protein N-terminal domain
family: Obg GTP-binding protein N-terminal domain
domain: Obg GTP-binding protein N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 83.1 bits (205), Expect = 1e-19
 Identities = 55/200 (27%), Positives = 82/200 (41%), Gaps = 48/200 (24%)

Query: 76  YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD---FDGSLILP 132
           + D+V + V+ GDGG+G V                         +F+R+     G     
Sbjct: 2   FVDQVKVYVKGGDGGNGMV-------------------------AFRREKYVPKGGPAGG 36

Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVP 192
            GG GGDVV   DEG  TL++F  K+ + A RG +        S+ + G  A  + I VP
Sbjct: 37  DGGKGGDVVFEVDEGLRTLMDFRYKKHFKAIRGEHG------MSKNQHGRNADDMVIKVP 90

Query: 193 LGTVVKHKRG-KLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 251
            GTVV      ++ +DL   G   ++ARGGRGG                           
Sbjct: 91  PGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANP-------------AP 137

Query: 252 KVLVLGQHGEEVSLELILRV 271
           ++   G+ G+E  + L L+V
Sbjct: 138 QLSENGEPGKERYIVLELKV 157

>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 156

class: All beta proteins
fold: Obg-fold
superfamily: Obg GTP-binding protein N-terminal domain
family: Obg GTP-binding protein N-terminal domain
domain: Obg GTP-binding protein N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 81.9 bits (202), Expect = 3e-19
 Identities = 55/199 (27%), Positives = 71/199 (35%), Gaps = 49/199 (24%)

Query: 76  YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILP--- 132
           + D ++ITV +G GG GAV                         SF+R+       P   
Sbjct: 2   FQDVLVITVAAGRGGDGAV-------------------------SFRREKFVPKGGPDGG 36

Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVP 192
            GG GG V + A    D+L     KR Y A+ G +                   L I VP
Sbjct: 37  DGGRGGSVYLRARGSVDSLSRLS-KRTYKAEDGEHGRGSQQHGRGGE------DLVIEVP 89

Query: 193 LGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 251
            GT V     G+L +DL   G  VLVARGG GG   +      R+               
Sbjct: 90  RGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAE--------- 140

Query: 252 KVLVLGQHGEEVSLELILR 270
                G+ GE+  L L L 
Sbjct: 141 ----AGEEGEKRRLRLELM 155

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 5/141 (3%)

Query: 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332
           A +   G  N GKSTL+  +T  K      P  T             +    +     L 
Sbjct: 1   ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60

Query: 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL- 391
                     +                +LV    AA E      +  +  + +    +L 
Sbjct: 61  KEVQERIKDEIVH--FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR 118

Query: 392 --ERPFIVVLNKIDLPEMYDD 410
             + P IV +NK+D  +   +
Sbjct: 119 ELDIPTIVAVNKLDKIKNVQE 139

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.9 bits (136), Expect = 2e-10
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
           + +VG PN GKSTLL  + +    I      T    +        +      +    ++ 
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62

Query: 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP 388
             L+E   +        L+ + +  +++ V+DA++     D + ++        
Sbjct: 63  NDLVERLGI-----ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYL 111

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 4e-09
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 20/136 (14%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
           V  VGL ++GK+ L   +   +        T++  +              Y       + 
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSA-----------IYKVNNNRGNS 48

Query: 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER- 393
             LI+         +   R     R +V V+D  +     + + V E L     D +   
Sbjct: 49  LTLIDLPGHESLRFQLLDRFKSSARAVVFVVD--SAAFQREVKDVAEFLYQVLIDSMALK 106

Query: 394 ---PFIVVLNKIDLPE 406
                ++  NK D+  
Sbjct: 107 NSPSLLIACNKQDIAM 122

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.5 bits (119), Expect = 3e-08
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPN 310
           A V +VG PN GKSTL   +   K  I  D    T  P 
Sbjct: 1   ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV 39

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 12/135 (8%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
           + +VG PN GKSTLL  +   K  I      T    +  +  +          +A   D 
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-------YQAIYVDT 60

Query: 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 394
           PGL            N         + + +          D   V  +LR         P
Sbjct: 61  PGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKA-----P 115

Query: 395 FIVVLNKIDLPEMYD 409
            I+ +NK+D  +   
Sbjct: 116 VILAVNKVDNVQEKA 130

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 18/135 (13%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
           + + G  N+GK++LL  +T         P       L   D D            +   L
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG-----------SGVTL 50

Query: 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLER 393
                   L   L        +  + L+ ++D+      +        ++        E 
Sbjct: 51  VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 110

Query: 394 --PFIVVLNKIDLPE 406
               ++  NK +L  
Sbjct: 111 GIDILIACNKSELFT 125

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 7/133 (5%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333
           + ++G    GKS+ + +I   +    + +      P +       +      +   T   
Sbjct: 35  ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR----SRAGFTLNIIDTPGL 90

Query: 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 393
           + G          +    L       L V  +DA   +   D    K     +       
Sbjct: 91  IEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDN-LDKLVAKAITDSFGKGIW-N 148

Query: 394 PFIVVLNKIDLPE 406
             IV L       
Sbjct: 149 KAIVALTHAQFSP 161

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (103), Expect = 4e-06
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL 311
           V + G PNAGKS+LL A+   +  I      T    L
Sbjct: 4   VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 40

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 24/145 (16%)

Query: 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTLMPNLGRLDGDP 318
           +L+ I   V +V + G   +GKS+ +  +     +            T+  +  +    P
Sbjct: 48  ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 107

Query: 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRT 378
            +            DLPG+             +L  ++       +I +A     ND   
Sbjct: 108 NV---------VFWDLPGIGSTNF----PPDTYLEKMKFYEYDFFIIISATRFKKNDIDI 154

Query: 379 VKEELRMYNPDYLERPFIVVLNKID 403
            K  + M       + F  V  K+D
Sbjct: 155 AK-AISMMK-----KEFYFVRTKVD 173

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN 310
           V +VG PN GKSTLL  +   K         T    
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR 43

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPN 310
           V +VG PN GKSTL  AI + +  + +  P TT  P 
Sbjct: 11  VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV 47

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (95), Expect = 6e-05
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTT 306
           V   G  NAGKS+ L  +T+ K          
Sbjct: 19  VAFAGRSNAGKSSALNTLTNQKSLARTSKTPG 50

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 13/137 (9%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334
           V ++G  + GK+TLL  I  +     +    T   ++G  +    +             +
Sbjct: 8   VSVLGHVDHGKTTLLDHIRGSAVASREAGGIT--QHIGATEIPMDVIEGICGDFLKKFSI 65

Query: 335 PGLIEGAHLGKGLG-----RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 389
              + G       G         R      L + ++D                  +    
Sbjct: 66  RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQE------ALNILR 119

Query: 390 YLERPFIVVLNKIDLPE 406
               PF+V  NKID   
Sbjct: 120 MYRTPFVVAANKIDRIH 136

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 37/149 (24%)

Query: 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG---------RLDGDP 318
           + +VV    L+G    GKS LL+  T  + ++       +              +     
Sbjct: 4   LFKVV----LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 59

Query: 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRT 378
           T G E+Y    +                       + R     + V D A      +   
Sbjct: 60  TAGQERYRRITSA----------------------YYRGAVGALLVYDIAKHLTYENVER 97

Query: 379 VKEELRMYNPDYLERPFIVVLNKIDLPEM 407
             +ELR +         ++V NK DL  +
Sbjct: 98  WLKELRDHADS--NIVIMLVGNKSDLRHL 124

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTT 306
           + L G  N GKS+ + ++ + K          
Sbjct: 26  IALAGRSNVGKSSFINSLINRKNLARTSSKPG 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d1udxa1	156	Obg GTP-binding protein N-terminal domain {Thermus	100.0
d1lnza1	157	Obg GTP-binding protein N-terminal domain {Bacillu	100.0
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.85
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.83
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.83
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.81
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.75
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.73
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.71
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.7
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.68
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.66
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.6
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.59
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.56
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.55
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.54
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.54
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.53
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.53
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.53
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.52
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.51
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.51
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.5
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.5
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.49
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.48
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.48
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.47
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.46
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.45
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.44
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.43
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.43
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.43
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.41
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.4
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.39
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.39
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.39
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.38
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.37
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.37
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.36
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.36
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.35
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.35
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.35
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.34
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.29
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.22
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.22
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.17
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.16
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.16
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.11
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.09
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.08
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.03
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.02
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.01
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.0
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.94
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.85
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.85
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.83
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.74
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.68
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.28
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.09
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.88
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.44
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.21
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.15
d1okkd2	207	GTPase domain of the signal recognition particle r	97.1
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.97
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.94
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.88
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.69
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.66
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.27
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.25
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.73
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.72
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.44
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.39
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.37
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.33
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.19
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.15
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.66
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.23
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.14
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.91
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.88
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.82
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.74
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.72
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.72
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.51
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.48
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.48
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.43
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	93.34
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	93.33
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.3
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.12
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.12
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.08
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.06
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.02
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.98
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.95
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.89
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.84
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.83
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.73
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.58
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	92.48
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.39
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.37
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.34
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	92.34
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	92.29
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.25
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.22
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	92.19
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.16
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.12
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	92.06
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	92.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.99
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	91.98
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.95
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	91.91
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	91.9
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	91.79
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	91.74
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	91.64
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.38
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.19
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	91.12
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.02
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	90.79
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	90.64
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	90.63
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	90.61
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.56
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.49
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.47
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	90.44
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	90.01
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	88.9
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	88.71
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.28
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.25
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	87.92
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	87.78
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	87.74
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	87.32
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	86.93
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	86.78
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	86.04
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	85.43
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	85.29
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	84.87
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	84.72
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	84.46
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	83.87
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	83.84
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	83.73
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	83.36
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	82.81
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.29
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	82.04
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	81.58
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	81.22
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	80.97
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	80.43

>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Obg-fold
superfamily: Obg GTP-binding protein N-terminal domain
family: Obg GTP-binding protein N-terminal domain
domain: Obg GTP-binding protein N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.9e-45  Score=325.31  Aligned_cols=155  Identities=36%  Similarity=0.527  Sum_probs=140.5

Q ss_pred             CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655           75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF  154 (421)
Q Consensus        75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~  154 (421)
                      .|+|+++|+|+||+|||||+|              |+||||    .+++|||||    |||+||||||+||++++||++|
T Consensus         1 mF~D~~~i~v~~G~GG~G~~s--------------f~rek~----~~~ggp~GG----~GG~GG~Vi~~ad~~l~tL~~~   58 (156)
T d1udxa1           1 MFQDVLVITVAAGRGGDGAVS--------------FRREKF----VPKGGPDGG----DGGRGGSVYLRARGSVDSLSRL   58 (156)
T ss_dssp             CCCSEEEEEEECCCCCCCCCC--------------BCCBTT----BSCCCBCCC----CCCCCCCEEEEECTTCCSSTTS
T ss_pred             CCeEEEEEEEEecCCCCCcee--------------eecccc----ccCCCCCCC----CCCccceEEEEECchhhhHHhh
Confidence            599999999999999999997              667776    688999998    9999999999999999999999


Q ss_pred             cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEec-cCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655          155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN  233 (421)
Q Consensus       155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~~-~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~  233 (421)
                      + +++|+|++|+||.      +++++|++|+|++|+||+||+|++. ++++|+||++++++++||+||+||+||.+|.++
T Consensus        59 ~-~~~~~A~~G~~G~------~~~~~G~~G~D~~I~VP~GT~V~~~~~~~~i~dl~~~g~~~lva~GG~GG~GN~~f~ss  131 (156)
T d1udxa1          59 S-KRTYKAEDGEHGR------GSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSP  131 (156)
T ss_dssp             C-SSCEECCCCCCCB------TTTBCCCCCCCEEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCS
T ss_pred             h-hceEEeccCCCcc------CccccCCCCCCEEEEecCCCEEEeCCCCEEEEEeccCCcEEEEecCCCCCCcccccccc
Confidence            6 6789999999986      4788999999999999999999984 589999999999999999999999999877553


Q ss_pred             hhhccccccccccccchhHHHhcCCCccchhhhHHhhh
Q 014655          234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRV  271 (421)
Q Consensus       234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~  271 (421)
                               +    +++|++++.|++||++.++||||+
T Consensus       132 ---------~----n~~P~~~~~G~~Gee~~i~LELKL  156 (156)
T d1udxa1         132 ---------T----RQAPRFAEAGEEGEKRRLRLELML  156 (156)
T ss_dssp             ---------S----CSSCCEEECCCCCCEEEEEEEECC
T ss_pred             ---------c----CCCCccccCCCCceEEEEEEEEeC
Confidence                     2    356888999999999999999874

>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Obg-fold
superfamily: Obg GTP-binding protein N-terminal domain
family: Obg GTP-binding protein N-terminal domain
domain: Obg GTP-binding protein N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.5e-44  Score=323.14  Aligned_cols=156  Identities=35%  Similarity=0.553  Sum_probs=142.3

Q ss_pred             CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655           75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF  154 (421)
Q Consensus        75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~  154 (421)
                      .|||+++|+|+||+||+||+|              |+||+|    .++++||||    |||+||||||+||++++||++|
T Consensus         1 mFvD~~~i~v~aG~GG~G~~s--------------f~r~k~----~~~ggpdGG----~GG~GG~V~l~~d~~l~tL~~~   58 (157)
T d1lnza1           1 MFVDQVKVYVKGGDGGNGMVA--------------FRREKY----VPKGGPAGG----DGGKGGDVVFEVDEGLRTLMDF   58 (157)
T ss_dssp             CEEEEEEEEEECCCCCCCCCC--------------BCCCSS----SCCCCBCCC----CCCCCCCEEEEECTTCCCSCGG
T ss_pred             CCeEEEEEEEEECCCCCcccc--------------cccccc----ccCCCCCCC----CCcCCCEEEEEEchhhchhhhh
Confidence            599999999999999999997              667776    578999998    9999999999999999999999


Q ss_pred             cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEec-cCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655          155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN  233 (421)
Q Consensus       155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~~-~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~  233 (421)
                      +++++|+|++|+||.      +++++|++|+|++|+||+||+|++. ++++|+||.+++++++||+||+||+||.+|.++
T Consensus        59 ~~~k~~~A~~G~~G~------~~~~~G~~G~Dlii~VP~GT~V~~~~~~~~i~dl~~~g~~~lvakGG~GG~GN~~f~ss  132 (157)
T d1lnza1          59 RYKKHFKAIRGEHGM------SKNQHGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATP  132 (157)
T ss_dssp             GTCCEEECCCCCCCC------STTCCCCCCCCEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBT
T ss_pred             eeccceecccCCCcc------hhhhcCCCCCcEEEEeccceEEecCCCcEEEEeeccCCceEEEEecCCCCCcccccccc
Confidence            999999999999986      4789999999999999999999985 479999999999999999999999999877653


Q ss_pred             hhhccccccccccccchhHHHhcCCCccchhhhHHhhh
Q 014655          234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRV  271 (421)
Q Consensus       234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~  271 (421)
                                   .+++|++++.|++||++.++||||+
T Consensus       133 -------------~n~~P~~~~~G~~Ge~~~i~LeLKL  157 (157)
T d1lnza1         133 -------------ANPAPQLSENGEPGKERYIVLELKV  157 (157)
T ss_dssp             -------------TBSSCCCCCCCCCCCEEEEEEEEEC
T ss_pred             -------------cCCCCccccCCCCceEEEEEEEEEC
Confidence                         2356788999999999999999874

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.88  E-value=1.2e-23  Score=202.31  Aligned_cols=115  Identities=37%  Similarity=0.639  Sum_probs=90.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC--------Ccc-ccccceEEecCCcccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GAE-KYSSEATLADLPGLIEGAHL  343 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~--------~~~-~~~~~i~iiDtPGlie~a~~  343 (421)
                      .+|||||+||||||||+|+||++++.+++|||||++|+.|++......        .+. .....+.++|+||++++||+
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            589999999999999999999999999999999999999998754210        000 00135889999999999999


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhcC
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYN  387 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~~  387 (421)
                      ++|++..||+|+++||+|+||||+..          .+|.+|++.+..||..++
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f~~~di~~~~g~~dP~~Die~I~~EL~l~D  136 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALAD  136 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHhccceEEEeeccCCCCCcCCCCCcCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999753          367888888888777653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=3.4e-22  Score=178.80  Aligned_cols=136  Identities=54%  Similarity=0.891  Sum_probs=110.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +++|||||+||||||||+|+|++++..+.+++++|..++.+......       ...++++||||+.+..++...+...+
T Consensus         1 ~~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-------~~~~~~~DtpG~~~~~~~~~~~~~~~   73 (185)
T d1lnza2           1 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-------GRSFVMADLPGLIEGAHQGVGLGHQF   73 (185)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-------SCEEEEEEHHHHHHHTTCTTTTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-------CcEEEEecCCCcccCchHHHHHHHHH
Confidence            47899999999999999999999998889999999999888776542       24689999999998888888888999


Q ss_pred             HHhcccCCEEEEEeeCCCCCCh---hhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHH
Q 014655          352 LRHLRRTRLLVHVIDAAAENPV---NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSR  414 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~---~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l  414 (421)
                      ++++++|+.++++++....+..   +...........++..+.++|+++|+||+|+.+..+..+.+
T Consensus        74 l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~  139 (185)
T d1lnza2          74 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAF  139 (185)
T ss_dssp             HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHH
T ss_pred             HHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHH
Confidence            9999999999999998764332   22333444555666677789999999999998766554444

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.83  E-value=1.4e-21  Score=189.62  Aligned_cols=114  Identities=32%  Similarity=0.558  Sum_probs=93.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCC---------CccccccceEEecCCccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~---------~~~~~~~~i~iiDtPGlie~a~  342 (421)
                      .+|||||+||||||||+|+||++.. .+++|||||++|+.|++......         +.......+.++|+||++++|+
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~   90 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS   90 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccccc
Confidence            5899999999999999999998864 68999999999999998643200         0000113689999999999999


Q ss_pred             ccCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhc
Q 014655          343 LGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMY  386 (421)
Q Consensus       343 ~~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~  386 (421)
                      +++|++..||.|+++||+++||||+..          .+|.++++.+..||..+
T Consensus        91 ~g~GLGn~fL~~ir~~d~lihVV~~f~d~~i~~~~g~~dP~~Di~~I~~EL~l~  144 (296)
T d1ni3a1          91 TGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIK  144 (296)
T ss_dssp             SSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHhhccceeEEEEeccCCCCCCCCCCCcCcchhhhhhhhhHHHh
Confidence            999999999999999999999999865          35677888777666443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=1.6e-21  Score=173.90  Aligned_cols=130  Identities=58%  Similarity=0.918  Sum_probs=106.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +|+|+|+|.||||||||+|+|++.+..+.+++++|..+..+......       ...++++||||+++.+++.+.+...+
T Consensus         1 ~~~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~DtpG~~~~~~~~~~~~~~~   73 (180)
T d1udxa2           1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-------EERFTLADIPGIIEGASEGKGLGLEF   73 (180)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-------SCEEEEEECCCCCCCGGGSCCSCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecC-------CCeEEEcCCCeeecCchHHHHHHHHH
Confidence            47899999999999999999999998888888888888877665432       34799999999999888888888899


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ++++..++++++++|+... ..+.+..+..++..+.....++|+++|+||+|+...++
T Consensus        74 l~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~  130 (180)
T d1udxa2          74 LRHIARTRVLLYVLDAADE-PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEA  130 (180)
T ss_dssp             HHHHTSSSEEEEEEETTSC-HHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHH
T ss_pred             HHHHHhhhhhhhhcccccc-cccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHH
Confidence            9999999999999998653 34566666666665544445689999999999987654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=4.9e-21  Score=186.47  Aligned_cols=112  Identities=38%  Similarity=0.671  Sum_probs=62.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC---------CCccc-------cccceEEecCCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT---------LGAEK-------YSSEATLADLPG  336 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~---------~~~~~-------~~~~i~iiDtPG  336 (421)
                      .+|||||+||||||||+|+||++++.+++|||||++|+.|++...+.         .....       ...++.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            47999999999999999999999999999999999999997631100         00000       013599999999


Q ss_pred             ccccccccCchhHHHHHhcccCCEEEEEeeCCCC-----------CChhhHHHHHHHHH
Q 014655          337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELR  384 (421)
Q Consensus       337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~-----------~~~~~~~~l~~eL~  384 (421)
                      ++++++++++++..|+.++++||++++|||++..           ++.++++.+..+|.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~~~d~~~~~~~~~dp~~d~~~i~~eL~  139 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREID  139 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHH
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccccccccccccccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998742           34566666666654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=1.5e-18  Score=154.14  Aligned_cols=124  Identities=27%  Similarity=0.294  Sum_probs=93.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-CchhHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGRNF  351 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-~gl~~~f  351 (421)
                      .|+|||.+|||||||+|+|++.+..+ ++++.||.....+.....        +.++.++||||+.+..... ..+....
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--------~~~~~~~DtpG~~~~~~~~~~~~~~~~   78 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--------RRQIVFVDTPGLHKPMDALGEFMDQEV   78 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--------TEEEEEEECCCCCCCCSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee--------eeeeeecccccccccccccchhccccc
Confidence            69999999999999999999988654 788888887776655433        3479999999997654332 2233445


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +++++.||++|||+|++.+....+ +.+.+.|+.+.   .++|+++|+||+|+....+
T Consensus        79 ~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~---~~~piilv~NK~Dl~~~~~  132 (178)
T d1wf3a1          79 YEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAKYPE  132 (178)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCSSHH
T ss_pred             ccccccccceeeeechhhhhcccc-cchhhheeccc---cchhhhhhhcccccccCHH
Confidence            677899999999999987654433 45666676543   3689999999999976543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=3.8e-18  Score=151.08  Aligned_cols=119  Identities=25%  Similarity=0.210  Sum_probs=83.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc--------
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--------  344 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~--------  344 (421)
                      |+|+|||.||||||||+|+|++++..++++|+||.+......            ..+.++||||+.......        
T Consensus         1 a~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~------------~~~~ivDtpG~~~~~~~~~~~~~~~~   68 (184)
T d2cxxa1           1 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW------------KNHKIIDMPGFGFMMGLPKEVQERIK   68 (184)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE------------TTEEEEECCCBSCCTTSCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccc------------ccceecccCCceeccccccccccccc
Confidence            579999999999999999999999888999999977543221            357899999974321111        


Q ss_pred             CchhHHHHHhcccCCEEEEEeeCCCC-----------CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          345 KGLGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       345 ~gl~~~fL~~i~radvIl~VvD~s~~-----------~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..+...+...++.+|++++|+|++..           ....+. .+.+.+..     .++|+++|+||+|+....+
T Consensus        69 ~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~-~~~~~l~~-----~~~p~iiv~NK~D~~~~~~  138 (184)
T d2cxxa1          69 DEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDV-EFYQFLRE-----LDIPTIVAVNKLDKIKNVQ  138 (184)
T ss_dssp             HHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHH-HHHHHHHH-----TTCCEEEEEECGGGCSCHH
T ss_pred             hhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHH-HHHHHHHH-----cCCCEEEEEeeeehhhhHH
Confidence            11222334566789999999998642           112222 23445554     4689999999999876543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=7e-18  Score=146.42  Aligned_cols=126  Identities=23%  Similarity=0.219  Sum_probs=95.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc-hhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-LGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g-l~~~  350 (421)
                      .+|+++|.||||||||+|+|++.+..+ ..++++|.+.....+...        ...+.++|+||+.+....... ....
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~g~~~~~~~~~~~~~~~   73 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--------GMPLHIIDTAGLREASDEVERIGIER   73 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--------TEEEEEEECCCCSCCSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeecc--------CceeeeccccccccccccchhHHHHH
Confidence            589999999999999999999998775 677888777666555433        347899999999875332111 1122


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ....+..+|++++++|+......+....+.+.++.+.   .++|+++|+||+|+.....
T Consensus        74 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~iilv~NK~Dl~~~~~  129 (161)
T d2gj8a1          74 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP---AKLPITVVRNKADITGETL  129 (161)
T ss_dssp             HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC---TTCCEEEEEECHHHHCCCC
T ss_pred             HHHHHHhccccceeeccccccchhhhhhhhhhhhhcc---cccceeeccchhhhhhhHH
Confidence            3455688999999999998877777776666776654   4689999999999876543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=8.5e-18  Score=145.70  Aligned_cols=130  Identities=23%  Similarity=0.318  Sum_probs=96.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGR  349 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~  349 (421)
                      .+|+|+|.||||||||+|+|++.+..+ ++++++|..+....+...        +..+.++||||+......  ..-...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Dt~G~~~~~~~~~~~~~~~   72 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--------GILFRIVDTAGVRSETNDLVERLGIE   72 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--------TEEEEEEESSCCCSSCCTTCCCCCHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeC--------CeeEEeccccccccCCccHHHHHHHH
Confidence            379999999999999999999987654 788888888777666543        247899999998654331  222235


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG  418 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG  418 (421)
                      .+++++..+|+++||+|++++...+... +...+       ...++++++||+|+....+..+..+.++
T Consensus        73 ~~~~~~~~ad~ii~v~d~~~~~~~~~~~-~~~~~-------~~~~~i~~~~k~d~~~~~~~~~~~~~~~  133 (160)
T d1xzpa2          73 RTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-------KNKRYLVVINKVDVVEKINEEEIKNKLG  133 (160)
T ss_dssp             HHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-------TTSSEEEEEEECSSCCCCCHHHHHHHHT
T ss_pred             HHHHHHHhCCEEEEEEeCCCCcchhhhh-hhhhc-------ccccceeeeeeccccchhhhHHHHHHhC
Confidence            6788999999999999999877654433 33332       3578999999999988766555444443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=3.6e-17  Score=144.03  Aligned_cols=121  Identities=25%  Similarity=0.254  Sum_probs=82.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC--chhH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGR  349 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~--gl~~  349 (421)
                      |+|+|+|.||||||||+|+|++.+.. +++++++|.....+.+...        ...+.++|+||+........  ....
T Consensus         1 a~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~~~d~~g~~~~~~~~~~~~~~~   72 (171)
T d1mkya1           1 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--------GKTFKLVDTCGVFDNPQDIISQKMKE   72 (171)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET--------TEEEEEEECTTTTSSGGGCCCHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccc--------ccccccccccceeeeecccccccccc
Confidence            57999999999999999999998775 4888999988877776543        24789999999877543322  2233


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..+..||++++++|++......+ ..+...++.+     ++|+|+|+||+|+...
T Consensus        73 ~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~-----~~pviiv~NK~Dl~~~  124 (171)
T d1mkya1          73 VTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS-----TVDTILVANKAENLRE  124 (171)
T ss_dssp             HHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH-----TCCEEEEEESCCSHHH
T ss_pred             ccccccccCcEEEEeecccccccccc-cccccccccc-----cccccccchhhhhhhh
Confidence            45667889999999999987655444 4566677764     5899999999999754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=1.2e-16  Score=141.87  Aligned_cols=125  Identities=26%  Similarity=0.299  Sum_probs=87.7

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-----cc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-----LG  344 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-----~~  344 (421)
                      ...+|+|+|.+|||||||+|+|++.+..+ .++++||.....+.+...        +..+.++|+||+.....     ..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~~~~d~~g~~~~~~~~~~~~~   78 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID--------GRKYVFVDTAGLRRKSRVEPRTVE   78 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET--------TEEEEESSCSCC-----------C
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccC--------CceeeeeccCCccccccccccccc
Confidence            34689999999999999999999988654 888999988877766543        34789999999865322     12


Q ss_pred             CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .......+++++.||++++|+|++.+...+. ..+...++.     .+.|+|+|+||+|+....+
T Consensus        79 ~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~-----~~~~~i~v~nK~D~~~~~~  137 (186)
T d1mkya2          79 KYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER-----RGRASVVVFNKWDLVVHRE  137 (186)
T ss_dssp             CSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-----TTCEEEEEEECGGGSTTGG
T ss_pred             cchhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH-----cCCceeeeccchhhhcchh
Confidence            2334566788899999999999987654433 445566665     4589999999999875543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.60  E-value=5.2e-16  Score=139.33  Aligned_cols=122  Identities=20%  Similarity=0.250  Sum_probs=79.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCC--CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc------
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------  343 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~--~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~------  343 (421)
                      +++|+|+|+||||||||+|+|++.+.  ..+.++++|.......+.           ..+.++|+++.......      
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~~~~~   91 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-----------DELHFVDVPGYGFAKVSKSEREA   91 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-----------TTEEEEECCCBCCCSSCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc-----------ccceEEEEEeeccccccccccch
Confidence            46899999999999999999998764  347778888766555443           24677888886432211      


Q ss_pred             cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      ...+...+.++...+|++++|+|++.+.. .+...+.+++..     .++|+++|+||+|+....+.
T Consensus        92 ~~~~~~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~-----~~~piivv~NK~D~~~~~~~  152 (195)
T d1svia_          92 WGRMIETYITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKY-----YGIPVIVIATKADKIPKGKW  152 (195)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGH
T ss_pred             hhhHHhhhhccccchhhhhhhhhcccccc-cccccccccccc-----ccCcceechhhccccCHHHH
Confidence            11123344566677899999999987644 334556667776     46899999999998765543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=3.2e-15  Score=134.27  Aligned_cols=120  Identities=19%  Similarity=0.212  Sum_probs=83.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      +.|+|||.||||||||+|+|++.+.    .++||.+...+.+...        +..+.++||||.....   ......+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~----~~~tt~~~~~~~~~~~--------~~~~~l~D~~g~~~~~---~~~~~~~~   68 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYD--------GSGVTLVDFPGHVKLR---YKLSDYLK   68 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSC----CCBCCCSSCEEETTGG--------GSSCEEEECCCCGGGT---HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC----CCeEEecceEEEEEeC--------CeEEEEEecccccchh---hHHHHHHH
Confidence            6899999999999999999998764    3567766666655433        3578999999986542   22344556


Q ss_pred             HhcccCCEEEEEeeCCCC-CChhhHHHH----HHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAE-NPVNDYRTV----KEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~-~~~~~~~~l----~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ..+..++.+++++|+... ...++...+    ...++...  ..+.|+++|+||+|+.....
T Consensus        69 ~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          69 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC--ENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHS--TTCCCEEEEEECTTSTTCCC
T ss_pred             HHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHH--hccCCeEEEEEeecccccCc
Confidence            677888999999998753 222332222    22222222  24689999999999987653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.56  E-value=1.8e-15  Score=134.84  Aligned_cols=125  Identities=20%  Similarity=0.149  Sum_probs=76.6

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      +|.+ +|++||+||||||||+|+|++..... ....++.....+................+.++|+||..+.       .
T Consensus         3 ~k~i-nIaiiG~~naGKSTL~n~L~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~-------~   73 (179)
T d1wb1a4           3 FKNI-NLGIFGHIDHGKTTLSKVLTEIASTS-AHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL-------I   73 (179)
T ss_dssp             CEEE-EEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHHHH-------H
T ss_pred             CCCE-EEEEEeCCCCcHHHHHHHHHHhcCce-ecccccceeeeeeeccccccccccCCcccccccccccccc-------c
Confidence            4455 89999999999999999999754322 1111111111111110000000011346899999997542       3


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ......+..+|++++|+|++.....++ +.++..+..     .++|+++|+||+|+...+
T Consensus        74 ~~~~~~l~~~d~~ilv~d~~~g~~~~~-~~~~~~~~~-----~~~p~iiv~NKiD~~~~~  127 (179)
T d1wb1a4          74 RAVVSAADIIDLALIVVDAKEGPKTQT-GEHMLILDH-----FNIPIIVVITKSDNAGTE  127 (179)
T ss_dssp             HHHHHHTTSCCEEEEEEETTTCSCHHH-HHHHHHHHH-----TTCCBCEEEECTTSSCHH
T ss_pred             cchhhhhhhccccccccccccccchhh-hhhhhhhhh-----cCCcceeccccccccCHH
Confidence            345567788999999999988654433 445566665     468999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.55  E-value=7.4e-15  Score=128.25  Aligned_cols=128  Identities=23%  Similarity=0.311  Sum_probs=85.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|+..+... .+ .+|.......+...        ...+.+||+||....       ...+.
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~-~~-~~T~~~~~~~~~~~--------~~~~~i~D~~G~~~~-------~~~~~   65 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFNE-DM-IPTVGFNMRKITKG--------NVTIKLWDIGGQPRF-------RSMWE   65 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCC-SC-CCCCSEEEEEEEET--------TEEEEEEEECCSHHH-------HTTHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCC-cc-cccceeeeeeeeee--------eEEEEEeeccccccc-------ccccc
Confidence            479999999999999999998866432 22 23444344444432        247899999996543       22334


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG  418 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG  418 (421)
                      ..+..++++++|+|+++..+.+....++..+.. .....+.|+++|+||+|+....+..+..+.++
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~  130 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLD-KPQLQGIPVLVLGNKRDLPGALDEKELIEKMN  130 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHT-CGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhh-hhcccCCcEEEEEeccccchhhhHHHHHHHHH
Confidence            557889999999999876665554444433322 12235789999999999987655444444444

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.54  E-value=5.4e-15  Score=128.71  Aligned_cols=121  Identities=22%  Similarity=0.261  Sum_probs=80.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|++....   ...+|.......+...        ...+.++||||.....       ....
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~~~---~~~~t~~~~~~~~~~~--------~~~~~~~D~~G~~~~~-------~~~~   64 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHR--------GFKLNIWDVGGQKSLR-------SYWR   64 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCCCS---SCCCCSSEEEEEEEET--------TEEEEEEEECCSHHHH-------TTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCC---cccceEeeeeeecccc--------ccceeeeecCcchhhh-------hHHH
Confidence            47999999999999999999876532   1223333333333322        2479999999965431       1223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchH
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSS  412 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~  412 (421)
                      .++..++++++|+|+++.....+....+..+.. .....+.|++||+||+|+.+.....+
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~  123 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLV-EERLAGATLLIFANKQDLPGALSCNA  123 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             hhhhhhhcceeeeecccchhHHHHHHhhhhhhh-hcccCCCceEEEEeccccccccCHHH
Confidence            456789999999999886555544433333221 12235689999999999976554443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.54  E-value=2.5e-15  Score=139.38  Aligned_cols=123  Identities=22%  Similarity=0.190  Sum_probs=76.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeec--------CCC--CCCccccccceEEecCCccccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD--------GDP--TLGAEKYSSEATLADLPGLIEGAH  342 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~--------~~~--~~~~~~~~~~i~iiDtPGlie~a~  342 (421)
                      +-|+++|.||||||||+|+|+.....+.....+|.......+.        ...  ......-..++.++||||+.+...
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            3499999999999999999987644332222222211111000        000  000001134799999999755321


Q ss_pred             ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                             .....+..||++|+|||+......++ +.++..+..     .++|+|||+||+|+....
T Consensus        86 -------~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~-----~~~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          86 -------LRKRGGALADLAILIVDINEGFKPQT-QEALNILRM-----YRTPFVVAANKIDRIHGW  138 (227)
T ss_dssp             -------SBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH-----TTCCEEEEEECGGGSTTC
T ss_pred             -------cchhcccccceEEEEEecccCcccch-hHHHHHhhc-----CCCeEEEEEECccCCCch
Confidence                   12345678999999999987665554 445556665     468999999999998654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.8e-15  Score=130.00  Aligned_cols=122  Identities=20%  Similarity=0.117  Sum_probs=85.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +.+|++||.+|||||||++++.+.+......+.++.......+..+.      ....+.++||||..+...       ..
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~d~~g~e~~~~-------~~   70 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG------KTIKAQIWDTAGQERYRR-------IT   70 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETT------EEEEEEEEECSSGGGTTC-------CC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECC------EEEEEEecccCCcHHHHH-------HH
Confidence            35899999999999999999988765443333333333333333221      124789999999754321       12


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+..+|++|+|+|++++.+......++.++..+..  .+.|+++|+||+|+.+..
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~--~~~piilvgnK~Dl~~~~  125 (175)
T d2f9la1          71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLR  125 (175)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC
T ss_pred             HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcC--CCCcEEEEEeeecccccc
Confidence            3456889999999999988777777777777776543  457999999999997643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.53  E-value=8.4e-15  Score=128.63  Aligned_cols=120  Identities=23%  Similarity=0.221  Sum_probs=80.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|++||.+|||||||+|+|.+.+... .+....    ....+...        ...+.++|+||....       ...+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~----~~~~i~~~--------~~~~~i~d~~g~~~~-------~~~~   77 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGF----NIKSVQSQ--------GFKLNVWDIGGQRKI-------RPYW   77 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE----EEEEEEET--------TEEEEEEECSSCGGG-------HHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCcceeeeee----eEEEeccC--------CeeEeEeeccccccc-------hhHH
Confidence            479999999999999999998865321 111111    11122221        247899999996543       3345


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchH
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSS  412 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~  412 (421)
                      ..+++.+|++++|+|+++..+..+...++.++... ....+.|+++|+||+|+.+..+...
T Consensus        78 ~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~-~~~~~~pillv~nK~Dl~~~~~~~~  137 (176)
T d1fzqa_          78 RSYFENTDILIYVIDSADRKRFEETGQELTELLEE-EKLSCVPVLIFANKQDLLTAAPASE  137 (176)
T ss_dssp             HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTC-GGGTTCCEEEEEECTTSTTCCCHHH
T ss_pred             HHHhhccceeEEeeccccccchhhhhhhhhhhhhh-hccCCCeEEEEEEeccccccccHHH
Confidence            56788999999999999876655554444433321 2234689999999999987655443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=8.9e-15  Score=134.05  Aligned_cols=118  Identities=22%  Similarity=0.242  Sum_probs=81.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcC------CCCcc-----CC-C-----CeeeeccceeecCCCCCCccccccceEEecCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA------KPDIA-----DY-P-----FTTLMPNLGRLDGDPTLGAEKYSSEATLADLP  335 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~------~~~ia-----~~-p-----fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP  335 (421)
                      .+|+++|++++|||||+++|+..      ...+.     ++ +     +.|.+.....+...        +..+.|+|||
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~--------~~~i~iiDtP   75 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--------KRHYSHVDCP   75 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--------SCEEEEEECC
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeC--------CeEEEEEeCC
Confidence            47999999999999999999632      11111     11 1     44444444444332        3579999999


Q ss_pred             cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCCch
Q 014655          336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e~~  411 (421)
                      |+.+.       .....+.+..||++|+|||+......++.+ .+..+..     .+.| +++++||+|+.+.++.+
T Consensus        76 Gh~df-------~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~-----~gi~~iiv~iNK~D~~~~~~~~  139 (204)
T d2c78a3          76 GHADY-------IKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ-----VGVPYIVVFMNKVDMVDDPELL  139 (204)
T ss_dssp             CSGGG-------HHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHH-----TTCCCEEEEEECGGGCCCHHHH
T ss_pred             Cchhh-------HHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCeEEEEEEecccCCCHHHH
Confidence            98764       445568889999999999999877665544 4455555     3455 67789999998765443

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.3e-14  Score=131.21  Aligned_cols=122  Identities=20%  Similarity=0.142  Sum_probs=79.4

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      .|+|+|.||||||||+|+|++.+....   ++|..++.+.+.....     ....+.++|+||....      ....+..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~---~~t~~~~~~~~~~~~~-----~~~~~~~~d~~g~~~~------~~~~~~~   67 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKVNNN-----RGNSLTLIDLPGHESL------RFQLLDR   67 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCSCEEEEEECSST-----TCCEEEEEECCCCHHH------HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc---cCCeeEEEEEEEEeee-----eeeeeeeeeccccccc------cchhhhh
Confidence            689999999999999999998775442   2344444455543311     2347899999996432      1123345


Q ss_pred             hcccCCEEEEEeeCCCCCC--hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENP--VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~--~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +++.++.+++|+|+++...  .+..+.+.+.+..........|++||+||+|++.+..
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            5688999999999986322  1122333344433222224578999999999987554

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.7e-15  Score=128.32  Aligned_cols=121  Identities=20%  Similarity=0.112  Sum_probs=76.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +.+|+|+|.+|||||||++++.+....  .++.++.+.....+..+.      ....+.+|||||..+.    ..+.   
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~--~~~~~~~~~~~~~i~~~~------~~~~l~i~D~~g~e~~----~~~~---   65 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDG--PEAEAAGHTYDRSIVVDG------EEASLMVYDIWEQDGG----RWLP---   65 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETT------EEEEEEEEECC-----------CH---
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccC--CcCCeeeeeecceeeccc------cccceeeeeccccccc----ceec---
Confidence            368999999999999999999886532  222222222111222111      1247899999997543    2222   


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+..+|++++|+|++++.+.+....|+.++..... ....|+++|.||+|+.+..
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~  121 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSR  121 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGC
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhhhc
Confidence            3446889999999999988877877778877766532 2457999999999997653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.52  E-value=7.9e-15  Score=129.17  Aligned_cols=127  Identities=18%  Similarity=0.250  Sum_probs=82.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|.+.....   ..+|.......+...        ...+.++|+||..+.       ...+.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~~~~---~~~t~~~~~~~~~~~--------~~~~~i~D~~g~~~~-------~~~~~   74 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYK--------NVKFNVWDVGGQDKI-------RPLWR   74 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCCCEE---EEEETTEEEEEEEET--------TEEEEEEEESCCGGG-------HHHHG
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCC---ccceeeeeEEEeecc--------ceeeEEecCCCcchh-------hhHHH
Confidence            579999999999999999998765211   122222222222211        247899999997653       23344


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG  418 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG  418 (421)
                      .++..++++++|+|+++.........++..+.. .......|+++|+||+|+.++....+..+.++
T Consensus        75 ~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~-~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~  139 (173)
T d1e0sa_          75 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIN-DREMRDAIILIFANKQDLPDAMKPHEIQEKLG  139 (173)
T ss_dssp             GGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHT-SGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             hhhcccceEEEEEecccchhHHHHHHHHHHHhh-hcccccceeeeeeecccccccccHHHHHHHHH
Confidence            567899999999999876655544333332221 11235689999999999987665544444444

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.9e-14  Score=126.41  Aligned_cols=120  Identities=13%  Similarity=0.069  Sum_probs=81.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +.+|+++|.+|||||||+++|.+.+...  .+....+..........        ....+.+|||||..+.       ..
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~wDt~G~e~~-------~~   69 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND--------KRIKLQIWDTAGQERY-------RT   69 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETT--------EEEEEEEEEECCSGGG-------HH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeec--------ceEEEEEEECCCchhh-------HH
Confidence            4689999999999999999998765322  22223233222222221        1246899999996543       11


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .....++.||++|+|+|++++.+......++..+.....  ...|+++|+||+|+....
T Consensus        70 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~  126 (169)
T d3raba_          70 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDER  126 (169)
T ss_dssp             HHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC--SCCEEEEEEECTTCGGGC
T ss_pred             HHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccC--CcceEEEEEeeccccccc
Confidence            222357889999999999987777776666666655442  468899999999987643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.1e-15  Score=128.36  Aligned_cols=119  Identities=19%  Similarity=0.136  Sum_probs=81.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+|+|.+|||||||+++|+..+.. ..+..|. .+.....+...      .....+.++||+|..+...    +.   
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~-~~~~~ti~~~~~~~~~~~~------~~~~~~~i~d~~g~~~~~~----~~---   68 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVN------DEDVRLMLWDTAGQEEFDA----IT---   68 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEET------TEEEEEEEECCTTGGGTTC----CC---
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-cccccccccccceeeeeec------CceeeeeeeccCCccchhh----hh---
Confidence            47999999999999999999875422 2222111 11111111111      1124689999999776422    22   


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.+|++++|+|+++..+.+.+..|.+++..+.   .+.|+++|+||+|+.+..
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~iilVgnK~Dl~~~~  122 (164)
T d1z2aa1          69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDS  122 (164)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGC
T ss_pred             hhhhccCceEEEEEeccchhhhhhcccccccccccC---CCceEEEeeccCCcccce
Confidence            244788999999999998887777777777777654   368999999999987643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=127.64  Aligned_cols=122  Identities=17%  Similarity=0.105  Sum_probs=84.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +.+|+|+|.+|||||||+++|+..+......+.++.+.....+....      ....+.+|||||..+.       ....
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~Dt~G~e~~-------~~~~   71 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING------EKVKLQIWDTAGQERF-------RSIT   71 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGG-------HHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECC------EEEEEEEEECCCchhh-------HHHH
Confidence            46899999999999999999998764433334333333322332221      1246889999996443       1122


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+++.++++++|+|+++..+.+....++..+.....  ...|+++|.||+|+....
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ilvgnK~D~~~~~  126 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERR  126 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGC
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhccccc--ccccEEEEEeeccccccc
Confidence            2457889999999999987777777777776655432  458899999999987543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.50  E-value=2.1e-14  Score=135.86  Aligned_cols=129  Identities=17%  Similarity=0.119  Sum_probs=89.5

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      .-.+|+|+|.||||||||+|+|++.+..+ ++.+.+|.+.........        +.++.++||||+.+.......+..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~--------g~~i~viDTPGl~~~~~~~~~~~~  102 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--------GFTLNIIDTPGLIEGGYINDMALN  102 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--------TEEEEEEECCCSEETTEECHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEec--------cEEEEEEeeecccCCcchHHHHHH
Confidence            34689999999999999999999988765 677888887776655543        347999999999876443333322


Q ss_pred             HHHHhc--ccCCEEEEEeeCCCC-CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHL--RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i--~radvIl~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ......  ...++++||+++... ...++...+......+... ..++++||+||+|.....
T Consensus       103 ~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~-~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         103 IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCGG
T ss_pred             HHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh-hhhCEEEEEECcccCCcC
Confidence            222222  356899999998764 3444544444444444322 246799999999987643

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.50  E-value=9.7e-15  Score=129.44  Aligned_cols=128  Identities=17%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|...+...   ..+|.......+...        ...+.++|+||......    +   ..
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~~~~~~~---~~~t~~~~~~~~~~~--------~~~~~i~D~~g~~~~~~----~---~~   79 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQIGEVVT---TKPTIGFNVETLSYK--------NLKLNVWDLGGQTSIRP----Y---WR   79 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCSEEEE---ECSSTTCCEEEEEET--------TEEEEEEEEC----CCT----T---GG
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCc---cccccceEEEEEeeC--------CEEEEEEecccccccch----h---HH
Confidence            689999999999999999998664321   111222222222221        24789999999765421    1   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF  419 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl  419 (421)
                      .++..+|++++|+|+++.........++.++.. .....+.|++||+||+|+.......+..+.+++
T Consensus        80 ~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~-~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~  145 (182)
T d1moza_          80 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ-EEELQDAALLVFANKQDQPGALSASEVSKELNL  145 (182)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTT-SSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTT
T ss_pred             hhhccceeEEEEeeecccccchhHHHHHHHHHH-hhccCCcceEEEEEeeccccccCHHHHHHHHHH
Confidence            446789999999999987776555444333211 223456899999999999876555544455443

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=2.4e-14  Score=125.75  Aligned_cols=125  Identities=18%  Similarity=0.150  Sum_probs=77.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +.+|++||.+|||||||+++|++.+... .+..|+............    ......+.++||||..+..       ...
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~~~~~~~~~~d~~g~~~~~-------~~~   69 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVD----GDKVATMQVWDTAGQERFQ-------SLG   69 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCS----SSCCEEEEEECCC----------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCC-ccCcccccceeeeeeeec----CcccccceeeccCCchhhh-------hHH
Confidence            5689999999999999999998765322 222222111111111100    0112358899999975431       112


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...++.+|++++|+|+++..+.+....+..++..+.  ......|+++|+||+|+.+..
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~  128 (175)
T d1ky3a_          70 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK  128 (175)
T ss_dssp             -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG
T ss_pred             HHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhh
Confidence            344688999999999998877777777777765532  122468999999999997643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.1e-14  Score=125.86  Aligned_cols=122  Identities=16%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++++..+. ...+..|..+.....+..+      .....+.++|++|....       .....
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f-~~~~~~T~~~~~~~~~~~~------~~~~~l~~~d~~g~~~~-------~~~~~   68 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTF-RESYIPTVEDTYRQVISCD------KSICTLQITDTTGSHQF-------PAMQR   68 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCC-CSSCCCCSCEEEEEEEEET------TEEEEEEEEECCSCSSC-------HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CCccCcceeeccccceeec------cccceeccccccccccc-------ccccc
Confidence            4799999999999999999987542 2233333222111111111      11236889999997653       22233


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+..+|++++|+|++++++.+.+..++.++..+.......|+++|.||+|+....
T Consensus        69 ~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~  124 (171)
T d2erxa1          69 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR  124 (171)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred             ccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccc
Confidence            45678999999999998877777777777776654444578999999999986543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.48  E-value=6.2e-14  Score=127.84  Aligned_cols=119  Identities=19%  Similarity=0.100  Sum_probs=80.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC----------------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK----------------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG  336 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~----------------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG  336 (421)
                      .+|+++|.+++|||||+++|+..-                .......+.|.+.....+...        ...+.++||||
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~--------~~~~~~iDtPG   75 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--------ARHYAHTDCPG   75 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------SCEEEEEECSS
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEec--------eeeEEeecCcc
Confidence            479999999999999999997520                000111234444443333322        35799999999


Q ss_pred             ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655          337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~  411 (421)
                      +.+.       ....++.+..+|++|+|||+......++.+ .+..+..+    ..+|+|+++||+|+...++.+
T Consensus        76 h~~f-------~~~~~~~~~~aD~allVVda~~G~~~QT~~-~~~~a~~~----~~~~iIv~iNK~D~~~~~~~~  138 (196)
T d1d2ea3          76 HADY-------VKNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQI----GVEHVVVYVNKADAVQDSEMV  138 (196)
T ss_dssp             HHHH-------HHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHHT----TCCCEEEEEECGGGCSCHHHH
T ss_pred             hHHH-------HHHHHHHHhhcCeEEEEEEcCCCCchhHHH-HHHHHHHh----cCCcEEEEEecccccccHHHH
Confidence            8653       344567788899999999999876555444 44444443    236789999999998654443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=7.8e-14  Score=123.86  Aligned_cols=124  Identities=22%  Similarity=0.242  Sum_probs=82.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCC---eeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPF---TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pf---TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      +.+|+|+|.+|||||||+++|++.+.. ..+.-   .+.......+..        ....+.++||||..+....     
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~--------~~~~~~~~d~~g~~~~~~~-----   67 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDD--------RLVTMQIWDTAGQERFQSL-----   67 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSS--------CEEEEEEEEECSSGGGSCS-----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCC-CCcCCccceeeeeeeeeeCC--------ceEEEEeeecCCccccccc-----
Confidence            468999999999999999999986632 22221   112111111111        1246889999997664322     


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCCCCch
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kP~IIVlNK~Dl~~~~e~~  411 (421)
                        ....+..||++++|+|.++..+......+++++.....  .....|+++|+||+|+...+...
T Consensus        68 --~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~  130 (184)
T d1vg8a_          68 --GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVAT  130 (184)
T ss_dssp             --CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCH
T ss_pred             --ccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhH
Confidence              12446789999999999887666666666666654321  12357999999999997655443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.7e-14  Score=122.70  Aligned_cols=120  Identities=16%  Similarity=0.078  Sum_probs=83.2

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|++||.+|||||||+++|++.+......+..+.......+..+.      ....+.+||++|..+.       ......
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~d~~g~~~~-------~~~~~~   68 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED------RTIRLQLWDTAGQERF-------RSLIPS   68 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSS------CEEEEEEEEECCSGGG-------GGGHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCC------CceeeeecccCCcchh-------ccchHH
Confidence            799999999999999999997663222122222222222222211      1347899999997654       122345


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ++..+|++++|+|+++..+.+....++.++..+..  .+.|+++|.||+|+.+..
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~  121 (164)
T d1yzqa1          69 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKR  121 (164)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGC
T ss_pred             HhhccceEEEeeccccccchhhhHhhHHHHHHhcC--CCceEEEEecccchhhhh
Confidence            57889999999999988877887777777766543  368899999999997543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.4e-14  Score=123.83  Aligned_cols=122  Identities=19%  Similarity=0.134  Sum_probs=82.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||+++|++.+......+.++.......+....      ....+.+|||||..+.    ..+..   
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~----~~~~~---   74 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG------NKAKLAIWDTAGQERF----RTLTP---   74 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT------EEEEEEEEEECSSGGG----CCSHH---
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEec------cccEEEEEECCCchhh----HHHHH---
Confidence            4799999999999999999998764332222222222222222211      1247899999997654    22333   


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+..+|++++|+|++++.+.+....++.++..+.. ....|++++.||.|.....
T Consensus        75 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~i~~~~nk~d~~~~~  129 (177)
T d1x3sa1          75 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENRE  129 (177)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCC
T ss_pred             HHHhcCCEEEEEEECCCccccccchhhhhhhccccc-ccceeeEEEeecccccccc
Confidence            346789999999999987777777777776655432 3468899999999987654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.4e-14  Score=122.87  Aligned_cols=122  Identities=16%  Similarity=0.056  Sum_probs=82.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +.+|+|+|.+|||||||++++.+.+......+.++.+...-.+..+.      ....+.++||||..+.    ..+   .
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~----~~~---~   70 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG------QKIKLQIWDTAGQERF----RAV---T   70 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETT------EEEEEEEEECTTGGGT----CHH---H
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECC------EEEEEEEeccCCchhH----HHH---H
Confidence            46899999999999999999987764332222222211111222111      1247899999997543    122   2


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...++.+|++++|+|+++..+.+....++..+.....  ...|+++|.||+|+....
T Consensus        71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~  125 (166)
T d1z0fa1          71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQR  125 (166)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC
T ss_pred             HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcc--ccceEEEEcccccchhhc
Confidence            2446789999999999987777777777777765443  467899999999986544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4e-14  Score=124.50  Aligned_cols=122  Identities=16%  Similarity=0.037  Sum_probs=82.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.+|||||||+++|+..+......+........-.+..+      .....+.+|||||..+.       ....
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~~i~D~~G~~~~-------~~~~   71 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG------GKYVKLQIWDTAGQERF-------RSVT   71 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET------TEEEEEEEEEECCSGGG-------HHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEec------CcceeEEEEECCCchhh-------hhhH
Confidence            3589999999999999999998765322222211111111111111      11246899999996553       2223


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+..+|++++|+|.++..+...+..++..+..+..  .+.|+++|+||+|+....
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~  126 (174)
T d2bmea1          72 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADR  126 (174)
T ss_dssp             HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGC
T ss_pred             HHHhhhCCEEEEEEecccchhHHHHhhhhcccccccC--CceEEEEEEecccccchh
Confidence            4557889999999999987777777777777666543  468999999999986543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5e-14  Score=124.09  Aligned_cols=121  Identities=17%  Similarity=0.072  Sum_probs=82.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|++||.+|||||||++++.+.+......+.++...........      .....+.++|++|..+..    .+.   .
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~d~~g~~~~~----~~~---~   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID------GKQIKLQIWDTAGQESFR----SIT---R   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET------TEEEEEEEECCTTGGGTS----CCC---H
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeee------eeEEEEEeecccCccchh----hHH---H
Confidence            589999999999999999998876433222222221111111111      012478999999986642    222   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+..+|++++|+|++++.+.+.+..++.++..+..  .+.|+++|.||+|+....
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~  124 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRR  124 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCC--CCCeEEEEecCCchhhhh
Confidence            335788999999999998888888777777766543  468999999999986543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4e-14  Score=126.39  Aligned_cols=120  Identities=18%  Similarity=0.156  Sum_probs=80.7

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+.+|+|+|.+|||||||+++++... ....+..|+.+.....+....      ....+.+|||+|......    +   
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~-f~~~~~~Ti~~~~~~~~~~~~------~~~~l~i~D~~g~e~~~~----~---   73 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTVFDHYAVSVTVGG------KQYLLGLYDTAGQEDYDR----L---   73 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSSCCCEEEEEESSS------CEEEEEEECCCCSSSSTT----T---
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhCC-CCCcCCCceeeeeeEEEeeCC------ceEEeecccccccchhhh----h---
Confidence            45689999999999999999998754 233444444333322222221      134689999999754321    2   


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ....+..+|++++|+|++++++++... .+...++.+.   .+.|+++|.||+|+.+.
T Consensus        74 ~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~---~~~~~ilvgnK~Dl~~~  128 (185)
T d2atxa1          74 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDD  128 (185)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTC
T ss_pred             hhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcC---CCCCeeEeeeccccccc
Confidence            223467899999999999877665543 3334444443   46899999999999763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.4e-14  Score=125.14  Aligned_cols=118  Identities=15%  Similarity=0.129  Sum_probs=79.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc--ceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~--~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|+++|.+|||||||+++++..+.. ..+. +|....  .-.+..+      .....+.+|||||..+...    +.. 
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~-~~~~-~Ti~~~~~~~~~~~~------~~~~~l~i~D~~g~~~~~~----~~~-   70 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLVFHTN------RGPIKFNVWDTAGQEKFGG----LRD-   70 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC------CCEE-EETTEEEEEEEECBT------TCCEEEEEEECTTHHHHSS----CGG-
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-cccc-cceeccccccccccc------cccccccccccccccccce----ecc-
Confidence            47999999999999999999876522 1221 222111  1112111      1134789999999765422    222 


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                        .++..||++++|+|++++.+.+.+..++.++....   .+.|+++|+||+|+....
T Consensus        71 --~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~  123 (170)
T d1i2ma_          71 --GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRK  123 (170)
T ss_dssp             --GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH---CSCCEEEEEECCCCSCSC
T ss_pred             --hhcccccchhhccccccccccchhHHHHHHHhhcc---CCCceeeecchhhhhhhh
Confidence              34678999999999999888888877777766543   368999999999997654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=9.3e-14  Score=124.84  Aligned_cols=122  Identities=19%  Similarity=0.148  Sum_probs=83.4

Q ss_pred             hhceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG  348 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~  348 (421)
                      .+.+|+|+|.+|||||||+++|+......  .+...++.......+...        ...+.+|||||..+..    .+.
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~--------~~~l~i~Dt~G~e~~~----~~~   72 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK--------TVKLQIWDTAGQERFR----TIT   72 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE--------EEEEEEECCTTTTTTT----CCC
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeE--------EEEEEEEECCCchhhH----HHH
Confidence            34689999999999999999998765222  222223333222222221        2478999999976542    122


Q ss_pred             HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                         ...++.||++|+|+|+++.........++..+.....  ...|+++|.||+|+.+...
T Consensus        73 ---~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~  128 (194)
T d2bcgy1          73 ---SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRV  128 (194)
T ss_dssp             ---GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCC
T ss_pred             ---HHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhccc--CCceEEEEEeccccccccc
Confidence               2346889999999999987776766666666655432  5689999999999987543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=7.7e-14  Score=121.70  Aligned_cols=126  Identities=16%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +.+|+++|.+|||||||+++|+..+......|.++.+.....+....      ....+.+|||||.....    .+.   
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~------~~~~~~i~Dt~G~~~~~----~~~---   68 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING------KKVKLQIWDTAGQERFR----TIT---   68 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSS------CEEEEEEECCTTGGGTS----CCC---
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECC------EEEEEEEEECCCchhhH----HHH---
Confidence            46899999999999999999998764332223333333333333321      12468899999975542    222   


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchH
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSS  412 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~  412 (421)
                      ...++.+|++++|+|++++++.+....+...+.....  ...|.+++.||.|+.......+
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~~~  127 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTAD  127 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHH
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcccc--CcceeeeecchhhhhhhhhhHH
Confidence            2346889999999999988777776666665555432  4578899999999877654443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.5e-14  Score=126.10  Aligned_cols=123  Identities=13%  Similarity=0.099  Sum_probs=63.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      +.+|+|||.+|||||||+++|++.+......+..+.+.....+..+.      ....+.+|||||..+...    +.   
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~G~e~~~~----~~---   72 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG------KRIKLQIWDTAGQERFRT----IT---   72 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETT------EEEEEEEEEC-------------C---
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECC------EEEEEEEEECCCchhhHH----HH---
Confidence            46899999999999999999987653222212222222222222221      124688999999755422    11   


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ...++.||++++|+|++++.+.+....++.++.....  .+.|+++|.||+|+.....
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~D~~~~~~  128 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQ  128 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCC
T ss_pred             HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhcc--CCceEEEEEecccchhhcc
Confidence            1236789999999999987777777777777764432  5689999999999987544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.7e-13  Score=120.47  Aligned_cols=122  Identities=21%  Similarity=0.189  Sum_probs=80.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce-eecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g-~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      +.+|+|+|.+|||||||+++++..+.. ..+..|+...... .+...      .....+.++|++|..+.       ...
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~~i~d~~g~~~~-------~~~   71 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVD------GHFVTMQIWDTAGQERF-------RSL   71 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEET------TEEEEEEEEECCCCGGG-------HHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCC-Cccccceeeeeeeeeeeec------CceeeEeeecccCccee-------hhh
Confidence            468999999999999999999876532 2333333221111 11111      11246789999997553       223


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ...++..+|++++|+|.+++.+.+....+.+++..+.  ......|+++|.||+|+.+.
T Consensus        72 ~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~  130 (174)
T d1wmsa_          72 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER  130 (174)
T ss_dssp             HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC
T ss_pred             hhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhc
Confidence            4456788999999999998766666666666665542  22346899999999999654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.43  E-value=8.2e-14  Score=122.39  Aligned_cols=120  Identities=20%  Similarity=0.170  Sum_probs=80.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++++..+ .+..|..|..+.....+..+      .....+.++|++|..+..    .+   ..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~-f~~~~~~T~~~~~~~~~~~~------~~~~~l~i~d~~g~~~~~----~~---~~   70 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLD------GEEVQIDILDTAGQEDYA----AI---RD   70 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEET------TEEEEEEEEECCC---CH----HH---HH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC-CCcccCCccccccccccccc------cccccccccccccccchh----hh---hh
Confidence            489999999999999999998754 22334333322222222221      113478999999986541    12   23


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++.+|++++|+|+++..+.+....+++++..+.. ..+.|+++|+||+|+.+.
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiivgnK~Dl~~~  124 (168)
T d1u8za_          71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK  124 (168)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGG
T ss_pred             hcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC-CCCCcEEEEecccccccc
Confidence            446789999999999987777777777777665432 246899999999998654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.5e-13  Score=120.18  Aligned_cols=119  Identities=20%  Similarity=0.172  Sum_probs=81.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce-eecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g-~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+|||.+|||||||+++|...+.. ..+..|+...... .+...      .....+.++||+|..+..    .+..  
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~~f~-~~~~~t~~~~~~~~~~~~~------~~~~~~~i~d~~g~~~~~----~~~~--   71 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVEDSFD-PNINPTIGASFMTKTVQYQ------NELHKFLIWDTAGLERFR----ALAP--   71 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEET------TEEEEEEEEEECCSGGGG----GGTH--
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC-ccccccccccccccccccc------ccccceeeeecCCchhhh----HHHH--
Confidence            47999999999999999999976532 2333333222111 11111      112467899999987642    2222  


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                       ..+..+|++++|+|++++.+.+.++.++.++.....  ...|+++|.||+|+.+.
T Consensus        72 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~  124 (167)
T d1z0ja1          72 -MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDV  124 (167)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGG
T ss_pred             -HHHhhccceEEEeeechhhhhhhHHHhhhhhhhccC--CcceEEEecccchhccc
Confidence             346789999999999988777777777766665543  46899999999999754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.5e-13  Score=119.32  Aligned_cols=122  Identities=19%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCcc--CCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia--~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +.+|+++|.+|||||||++++...+....  +....+.......+..        ....+.++|++|.......      
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~------   67 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG--------ERIKIQLWDTAGQERFRKS------   67 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT--------EEEEEEEEECCCSHHHHTT------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec--------cceEEEEEeccCchhhccc------
Confidence            45899999999999999999987653221  1111111111111211        1346899999996543111      


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ....++..+|++++|+|++++.+.+.+..++.++..+.. ..+.|+++|+||+|+....
T Consensus        68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pi~lvgnK~Dl~~~~  125 (165)
T d1z06a1          68 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAI  125 (165)
T ss_dssp             THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGC
T ss_pred             cceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhcc-CCCCeEEEEeccccchhcc
Confidence            122346889999999999998888887777777766542 2468999999999987643

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.3e-14  Score=123.57  Aligned_cols=120  Identities=19%  Similarity=0.161  Sum_probs=82.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|||.+|||||||+++++..+. ...++.|+.+.....+..+.      ....+.+|||+|..+..    .+.   .
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~l~~~d~~g~~~~~----~~~---~   72 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDG------IPARLDILDTAGQEEFG----AMR---E   72 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTTTS----CCH---H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccceeeEeccCC------eeeeeeccccccccccc----ccc---c
Confidence            5899999999999999999987653 23444444333333333221      12468899999987642    222   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..+..+|++++|+|+++..+.+.+..++..+.... ...+.|+++|+||+|+...
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ilvgnK~Dl~~~  126 (173)
T d2fn4a1          73 QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLESQ  126 (173)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-TSSCCCEEEEEECGGGGGG
T ss_pred             hhhccceeeeeecccccccccchhhhhhHHHHHHh-ccCCCceEEEEEeechhhc
Confidence            34677999999999998777777777766654432 1246899999999998754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.7e-13  Score=119.58  Aligned_cols=121  Identities=18%  Similarity=0.157  Sum_probs=82.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|||.+|||||||++++++.+.. ..+..|..+.....+..+      .....+.+||++|....       .....
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~~t~~~~~~~~~~~~------~~~~~l~~~d~~g~~~~-------~~~~~   69 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVD------SSPSVLEILDTAGTEQF-------ASMRD   69 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEET------TEEEEEEEEECCCTTCC-------HHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC-CccCCceeeeeeeeeecC------cceEeeccccCCCcccc-------ccchH
Confidence            48999999999999999999976532 222222211111111111      11246899999996543       22234


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .++..||++++|+|++++.+......++.++..... ..+.|+++|+||+|+....
T Consensus        70 ~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~  124 (167)
T d1kaoa_          70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESER  124 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGC
T ss_pred             HHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhcc
Confidence            456789999999999988877777777777765442 2468999999999987543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.41  E-value=5.9e-13  Score=113.40  Aligned_cols=121  Identities=21%  Similarity=0.242  Sum_probs=80.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.||||||||+++|++.+.... ++.+  ..........        ...+.++|+||....       .....
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~-~~~~--~~~~~~~~~~--------~~~~~~~d~~g~~~~-------~~~~~   62 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTI--GFNVETVEYK--------NISFTVWDVGGQDKI-------RPLWR   62 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-CCCS--SCCEEEEECS--------SCEEEEEECCCCGGG-------HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcc-ccce--eeEEEEEeee--------eEEEEEecCCCcccc-------hhhhh
Confidence            3799999999999999999987764221 1111  1111122221        247899999997653       33455


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchH
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSS  412 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~  412 (421)
                      .....++++++++|.++.........++.++... ......|+++|.||+|+.......+
T Consensus        63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~k~d~~~~~~~~~  121 (160)
T d1r8sa_          63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNAAE  121 (160)
T ss_dssp             HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             hhhccceeEEEEEEecChHHHHHHHHHHHHHHHh-hcccCceEEEEeecccccccccHHH
Confidence            6778899999999998876655554444444332 1234688999999999987654433

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.6e-13  Score=118.98  Aligned_cols=121  Identities=19%  Similarity=0.153  Sum_probs=78.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|||.+||||||||++++..+. +.++..|..+.....+..+.      ....+.++|++|..+...    +   ..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~~~~~d~~g~~~~~~----~---~~   71 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCVIDD------RAARLDILDTAGQEEFGA----M---RE   71 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC-CSSCCTTCCEEEEEEEEETT------EEEEEEEEECC----CCH----H---HH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CcccCcccccceeeeeeecc------cccccccccccccccccc----c---cc
Confidence            4899999999999999999987652 22333333222222222221      124689999999876521    2   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+..+|++++|+|.+++.+.+.+..++.++.... .....|+|+|.||+|+....
T Consensus        72 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilvgnK~Dl~~~~  126 (171)
T d2erya1          72 QYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK-DRDEFPMILIGNKADLDHQR  126 (171)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TSSCCSEEEEEECTTCTTSC
T ss_pred             ccccccceEEEeeccccccchhhHHHHhHHHHhhc-ccCCCCEEEEEeccchhhhc
Confidence            34577999999999998877777777776554432 12468999999999997653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.40  E-value=1.6e-13  Score=123.64  Aligned_cols=126  Identities=24%  Similarity=0.254  Sum_probs=76.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeec-----------cceeecCCCCCCccc----cccceEEecC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMP-----------NLGRLDGDPTLGAEK----YSSEATLADL  334 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p-----------~~g~v~~~~~~~~~~----~~~~i~iiDt  334 (421)
                      .+|+++|.+|+|||||+++|++.....   ....+.|.+.           ...............    -...+.++||
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt   85 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA   85 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred             EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeecc
Confidence            479999999999999999998754322   1111112111           000000000000000    0135899999


Q ss_pred             CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ||+.+.       .....+.+..+|++++|+|+.......+....+..+..+.    ..++++|+||+|+.+..+
T Consensus        86 PGh~~f-------~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~----~~~iiv~inK~D~~d~~~  149 (195)
T d1kk1a3          86 PGHEAL-------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG----QKNIIIAQNKIELVDKEK  149 (195)
T ss_dssp             SSHHHH-------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSCHHH
T ss_pred             chhhhh-------hHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc----CccceeeeecccchhhHH
Confidence            997543       3445566778999999999988654444444445555432    245888999999987643

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=4.2e-13  Score=117.86  Aligned_cols=121  Identities=19%  Similarity=0.125  Sum_probs=83.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++.+.+.. ..+..|..+.....+..+.      ....+.+||++|..+...    +.   .
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~d~~g~~~~~~----~~---~   70 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQKIFV-PDYDPTIEDSYLKHTEIDN------QWAILDVLDTAGQEEFSA----MR---E   70 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCC-TTCCTTCCEEEEEEEEETT------EEEEEEEEECCSCGGGCS----SH---H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-cccCcceeecccccccccc------cccccccccccccccccc----ch---h
Confidence            48999999999999999999876532 2222222111111122111      124689999999866522    22   3


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.+|++++|+|++++.+++.+..|+.++..... ....|+++|.||+|+....
T Consensus        71 ~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~-~~~~p~ilvgnK~Dl~~~~  125 (169)
T d1x1ra1          71 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLR  125 (169)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTC
T ss_pred             hhhhhccEEEEecccccchhhhccchhhHHHHhhcc-ccCccEEEEecccchhhhc
Confidence            456889999999999998888888888777665431 2468999999999997754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.1e-13  Score=116.04  Aligned_cols=121  Identities=18%  Similarity=0.157  Sum_probs=81.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|++||.+|||||||+++|++... ...+..|........+...      .....+.++|++|.....       ....
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~l~~~d~~~~~~~~-------~~~~   69 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVID------GETCLLDILDTAGQEEYS-------AMRD   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEEET------TEEEEEEEEEECCCGGGH-------HHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC-CCccCCccceeeccceeee------ceeeeeeeeeccCccccc-------cchh
Confidence            4799999999999999999987652 2223322221111111111      012468999999976541       1222


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+..++++++|+|++++.+++....|...+..... ..+.|+++|.||+|+....
T Consensus        70 ~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~  124 (166)
T d1ctqa_          70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDLAART  124 (166)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-CSSCCEEEEEECTTCSCCC
T ss_pred             hhhhcccccceeecccccccHHHHHHHHHHHHHhcC-CCCCeEEEEeccccccccc
Confidence            346789999999999988777777777777765432 1358999999999997644

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.3e-13  Score=117.70  Aligned_cols=121  Identities=16%  Similarity=0.118  Sum_probs=80.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|++.+. ...+..|........+..+.      ....+.++||+|..+...    +..   
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~d~~g~~~~~~----~~~---   70 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNG------QEYHLQLVDTAGQDEYSI----FPQ---   70 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC-CSCCCSSCCEEEEEEEEETT------EEEEEEEEECCCCCTTCC----CCG---
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-CcccCcceecccceEEecCc------EEEEeeeccccccccccc----ccc---
Confidence            4899999999999999999987542 22222222111111122111      124688999999876532    222   


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..+..+|++++|+|++++.+.+.+..++.++.... ...+.|+++|.||+|+....
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~r  125 (167)
T d1xtqa1          71 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV-GKVQIPIMLVGNKKDLHMER  125 (167)
T ss_dssp             GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHH-CSSCCCEEEEEECTTCGGGC
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcc-cccccceeeecccccccccc
Confidence            34678999999999998877777777766665432 12468999999999986543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.1e-13  Score=117.01  Aligned_cols=119  Identities=18%  Similarity=0.110  Sum_probs=80.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN  350 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~  350 (421)
                      .+|++||.+|||||||+++|...+...  .+....+..........        ....+.++||+|..+..    .+   
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~--------~~~~~~~~d~~g~~~~~----~~---   71 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD--------TTVKFEIWDTAGQERYH----SL---   71 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT--------EEEEEEEEEECCSGGGG----GG---
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccc--------eEEEEEeccCCCchhhh----hh---
Confidence            489999999999999999999765322  12222222211111111        12468999999976541    12   


Q ss_pred             HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+++.+|++++|+|.++.++.+....++..+.....  .+.|+++|.||+|+....
T Consensus        72 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~  127 (170)
T d1r2qa_          72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANKR  127 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGC
T ss_pred             HHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccC--CCceEEeecccccccccc
Confidence            22356889999999999987777777777776654332  468999999999986543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.7e-13  Score=117.97  Aligned_cols=119  Identities=20%  Similarity=0.174  Sum_probs=78.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|++||.+|||||||++++....- ...|..|.-......+..+      .....+.+|||+|.....        ...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f-~~~~~pTi~~~~~~~~~~~------~~~~~l~i~D~~g~~~~~--------~~~   67 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRF-IWEYDPTLESTYRHQATID------DEVVSMEILDTAGQEDTI--------QRE   67 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEET------TEEEEEEEEECCCCCCCH--------HHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceecccccccccc------ccceEEEEeecccccccc--------cch
Confidence            4799999999999999999998542 2333333211111111111      112478999999975431        122


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..||++++|+|++++.+...+..++..+.... ...+.|+++|.||+|+...
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilvgnK~Dl~~~  121 (168)
T d2atva1          68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK-KPKNVTLILVGNKADLDHS  121 (168)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSCCCEEEEEECGGGGGG
T ss_pred             hhhcccccceeecccCCccchhhhhhhcccccccc-cccCcceeeeccchhhhhh
Confidence            45677999999999998777777666655444322 1246899999999998654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2e-13  Score=119.33  Aligned_cols=120  Identities=22%  Similarity=0.079  Sum_probs=76.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+|+|.+|||||||++++.+.+... .+..|. .+.....+....      ....+.++|++|..+....       .
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~-~~~~t~~~~~~~~~~~~~~------~~~~~~~~d~~g~~~~~~~-------~   69 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGG------KRVNLAIWDTAGQERFHAL-------G   69 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSS------CEEEEEEEECCCC--------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCc-ccccccccchheeeeccCC------ccceeeeeccCCcceeccc-------c
Confidence            589999999999999999998765322 222221 111111222211      1347899999997654221       1


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ..++..+|++++|+|++++.+.+.+..+++.+.....  ...|+++|.||+|+....
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl~~~~  124 (167)
T d1z08a1          70 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKER  124 (167)
T ss_dssp             CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGC
T ss_pred             hhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccc--cccceeeecccccccccc
Confidence            2346789999999999987777666666655543322  457889999999987643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.7e-13  Score=116.89  Aligned_cols=116  Identities=12%  Similarity=0.109  Sum_probs=81.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+|||||||++++.+.+...  +..|+.+.....+..+.      ....+.+|||+|....            
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~t~~~~~~~~i~v~~------~~~~l~i~Dt~g~~~~------------   65 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDG------QTHLVLIREEAGAPDA------------   65 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHSCCCC--CCCSSCEEEEEEEEETT------EEEEEEEEECSSCCCH------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCC--cCCccceeEEEEeecCc------eEEEEEEeeccccccc------------
Confidence            589999999999999999999876432  22222222222222111      1246899999997542            


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.+|++|+|+|++++.+++.+..|..++..+... ....|+++|.||.|+....
T Consensus        66 ~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~  122 (175)
T d2bmja1          66 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS  122 (175)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS
T ss_pred             ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhh
Confidence            2356789999999999887778877788887766532 2456899999999986543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.36  E-value=7.1e-13  Score=120.48  Aligned_cols=127  Identities=21%  Similarity=0.228  Sum_probs=76.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccC--------CCCeeeeccceeecC----------CCC-----CCccccccce
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD--------YPFTTLMPNLGRLDG----------DPT-----LGAEKYSSEA  329 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~--------~pfTTl~p~~g~v~~----------~~~-----~~~~~~~~~i  329 (421)
                      .+|+++|..++|||||+++|++.......        ....+.....+....          ...     .........+
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   88 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI   88 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence            47999999999999999999874322100        000000111111000          000     0000112368


Q ss_pred             EEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          330 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       330 ~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      .++||||+.+.       ....+..+..||++|+|||+.+..+..+.+..+..+..+.    -+|+||++||+|+.+.++
T Consensus        89 ~iiD~PGH~df-------~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~----i~~iIV~vNK~Dl~~~~~  157 (205)
T d2qn6a3          89 SFIDAPGHEVL-------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVSKEE  157 (205)
T ss_dssp             EEEECSCHHHH-------HHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT----CCCEEEEEECGGGSCHHH
T ss_pred             EEeccchHHHH-------HhhhhcceeccccccccccccccccchhHHHHHHHHHHcC----CceeeeccccCCCccchH
Confidence            99999998653       3345667788999999999998754444444555555532    258899999999987654


Q ss_pred             c
Q 014655          410 D  410 (421)
Q Consensus       410 ~  410 (421)
                      .
T Consensus       158 ~  158 (205)
T d2qn6a3         158 A  158 (205)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.2e-13  Score=115.32  Aligned_cols=121  Identities=19%  Similarity=0.193  Sum_probs=83.1

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|++||.+|||||||++++...+. ...+..|........+..+.      ....+.+||++|..+..    .+.   .
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~~~~~d~~g~~~~~----~~~---~   69 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDC------QQCMLEILDTAGTEQFT----AMR---D   69 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSS------CEEEEEEEEECSSCSST----THH---H
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccccceeEEeee------eEEEeccccccCccccc----ccc---c
Confidence            4799999999999999999987653 22333332222222222221      12468999999986642    122   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .+++.+|++++|+|++++.+++.+..+++.+.... .....|+++|.||+|+....
T Consensus        70 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~~~~~p~ilvgnK~Dl~~~~  124 (167)
T d1c1ya_          70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDER  124 (167)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CCSCCCEEEEEECTTCGGGC
T ss_pred             ccccccceeEEeeeccchhhhHhHHHHHHHHHHhc-CCCCCeEEEEEEecCccccc
Confidence            44678999999999998888888877777665432 12468999999999997543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.4e-13  Score=118.89  Aligned_cols=119  Identities=20%  Similarity=0.205  Sum_probs=77.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+++|.+++|||||+++++..+.. ..+..|..+.....+...      .....+.+||++|......    +   ..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~-~~~~~t~~~~~~~~~~~~------~~~~~l~i~D~~g~~~~~~----~---~~   68 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTVFENYVADIEVD------GKQVELALWDTAGLEDYDR----L---RP   68 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEET------TEEEEEEEEEECCSGGGTT----T---GG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC-CCcCCceeeecccccccc------ccceeeeccccCccchhcc----c---ch
Confidence            47999999999999999999886532 222222111111111111      1124689999999765421    1   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .++..+|++++|+|++++.+++.... +...+..+.   .+.|+++|.||+|+....
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~  122 (177)
T d1kmqa_          69 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDE  122 (177)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECGGGTTCH
T ss_pred             hhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC---CCCceEEeeecccccchh
Confidence            45788999999999998766655443 334455544   368999999999997643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.2e-13  Score=119.85  Aligned_cols=119  Identities=20%  Similarity=0.144  Sum_probs=79.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||+++|+..+. ...+..|..+.....+..+.      ....+.++|++|......    +.   .
T Consensus         6 iKivviG~~~vGKTsli~~~~~~~f-~~~~~~ti~~~~~~~~~~~~------~~~~~~~~d~~g~~~~~~----~~---~   71 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGQEDYDR----LR---P   71 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETT------EEEEEEEECCCCSGGGTT----TG---G
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC-CcccccceeeceeeeeeccC------cceEEEeecccccccchh----hh---h
Confidence            5899999999999999999987652 22333333222212222111      124688999999765421    11   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .++..+|++++|+|+++.++++.... +..+++.+.   .+.|+++|.||+|+.+..
T Consensus        72 ~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~  125 (183)
T d1mh1a_          72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK  125 (183)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTCH
T ss_pred             hcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC---CCCcEEEEeecccchhhh
Confidence            34678999999999998776666544 444555543   468999999999986543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.8e-13  Score=117.83  Aligned_cols=121  Identities=19%  Similarity=0.091  Sum_probs=80.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeee-eccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl-~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|+|+|.+|+|||||+++++........++.||. +.....+..+.      ....+.++|+|+....        ..|
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~d~~~~~g~--------e~~   69 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG------ESATIILLDMWENKGE--------NEW   69 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT------EEEEEEEECCTTTTHH--------HHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCC------ceeeeeeecccccccc--------ccc
Confidence            58999999999999999999987765544333332 22222222221      1246788998864211        122


Q ss_pred             --HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          352 --LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       352 --L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                        ..+++.+|++++|+|+++..+.+....++.++.... ...+.|+++|+||+|+.+..
T Consensus        70 ~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~~  127 (172)
T d2g3ya1          70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCR  127 (172)
T ss_dssp             HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGC
T ss_pred             cccccccccceeeeeecccccchhhhhhhhhhhhhhcc-ccCCceEEEEeccccccccc
Confidence              234688999999999998777777777777666532 12468999999999987653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.1e-13  Score=121.08  Aligned_cols=129  Identities=16%  Similarity=0.109  Sum_probs=75.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC----CCccccccceEEecCCcccccccccCch
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT----LGAEKYSSEATLADLPGLIEGAHLGKGL  347 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~----~~~~~~~~~i~iiDtPGlie~a~~~~gl  347 (421)
                      +.+|+|+|.+|||||||+++|++.+......+..+.+.....+..+..    .........+.++||||..+.       
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~-------   77 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF-------   77 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhh-------
Confidence            468999999999999999999976532221111111111111111100    000112346899999997543       


Q ss_pred             hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .......++.||++++|+|+++..+.+....+..++... ......|+++|+||+|+....
T Consensus        78 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iilv~nK~Dl~~~~  137 (186)
T d2f7sa1          78 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN-AYCENPDIVLIGNKADLPDQR  137 (186)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC-CTTTCCEEEEEEECTTCGGGC
T ss_pred             HHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhh-ccCCCceEEEEeeeccchhhh
Confidence            112233467899999999998755444443333332221 122457789999999997543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=6e-13  Score=133.53  Aligned_cols=113  Identities=17%  Similarity=0.264  Sum_probs=75.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-----ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-----IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG  346 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-----ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g  346 (421)
                      ..+|+|+|.||||||||+|+|++....     ......||.++.......         ...+++|||||+.+....   
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~---------~~~~~l~DtPG~~~~~~~---  123 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN---------IPNVVFWDLPGIGSTNFP---  123 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS---------CTTEEEEECCCGGGSSCC---
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC---------CCeEEEEeCCCccccccc---
Confidence            468999999999999999999985432     233455676665433321         246899999999765332   


Q ss_pred             hhHHHHHh--cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          347 LGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       347 l~~~fL~~--i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                       ...+++.  +..+|++++++|..  ....+. .+..++..     .++|+++|+||+|..
T Consensus       124 -~~~~~~~~~~~~~d~~l~~~~~~--~~~~d~-~l~~~l~~-----~~k~~~~V~nK~D~~  175 (400)
T d1tq4a_         124 -PDTYLEKMKFYEYDFFIIISATR--FKKNDI-DIAKAISM-----MKKEFYFVRTKVDSD  175 (400)
T ss_dssp             -HHHHHHHTTGGGCSEEEEEESSC--CCHHHH-HHHHHHHH-----TTCEEEEEECCHHHH
T ss_pred             -HHHHHHHhhhhcceEEEEecCCC--CCHHHH-HHHHHHHH-----cCCCEEEEEeCcccc
Confidence             2233333  46788888887743  444454 45667776     368999999999963

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=9e-13  Score=115.39  Aligned_cols=121  Identities=18%  Similarity=0.177  Sum_probs=78.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce--eecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g--~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      ..+|+++|.+|||||||+++++..+.....++ +|......  .+...      .....+.+|||||.....       .
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~l~i~Dt~G~e~~~-------~   71 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI-STVGIDFRNKVLDVD------GVKVKLQMWDTAGQERFR-------S   71 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCC-CCCSCEEEEEEEEET------TEEEEEEEEECCCC------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccc-ceeeeeeEEEEEEec------CcEEEEEEEECCCchhhH-------H
Confidence            46899999999999999999987653322222 22211111  12111      112478999999975431       1


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      .....+..+|++++|+|.++..+.+....++.++.....  ...|+++|.||+|+....
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~d~~~~~  128 (170)
T d2g6ba1          72 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHER  128 (170)
T ss_dssp             ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCC
T ss_pred             HHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccC--CCceEEEEEeeechhhcc
Confidence            122346789999999999987777777666666555432  457899999999988754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=3.9e-13  Score=117.70  Aligned_cols=121  Identities=25%  Similarity=0.314  Sum_probs=79.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH-
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF-  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f-  351 (421)
                      ..|+|+|.||||||||+|+|++++..+..++++|..+....+....       ...+.++|+||.......  +....+ 
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~   76 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-------AYQAIYVDTPGLHMEEKR--AINRLMN   76 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-------TEEEEEESSSSCCHHHHH--HHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecC-------CceeEeecCCCceecchh--hhhhhhh
Confidence            3589999999999999999999987776666666655543332211       235778899997654221  111111 


Q ss_pred             ---HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          352 ---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       352 ---L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                         ......++++++++|....  ......+...|..     ...|.++|+||+|+....+
T Consensus        77 ~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~~~l~~-----~~~~~i~v~~k~d~~~~~~  130 (179)
T d1egaa1          77 KAASSSIGDVELVIFVVEGTRW--TPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEKA  130 (179)
T ss_dssp             CCTTSCCCCEEEEEEEEETTCC--CHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCHH
T ss_pred             hccccchhhcceeEEEEecCcc--chhHHHHHHHhhh-----ccCceeeeeeeeeccchhh
Confidence               1123457888888887643  3444455555554     3578999999999887643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=4.3e-12  Score=107.52  Aligned_cols=117  Identities=26%  Similarity=0.337  Sum_probs=79.0

Q ss_pred             eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR  353 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~  353 (421)
                      +|+|+|.||||||||+|+|++.+...  + .+|.......+...        ...+.++|++|......       ....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~--~-~~t~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-------~~~~   63 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT--L-QPTWHPTSEELAIG--------NIKFTTFDLGGHIQARR-------LWKD   63 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC--C-CCCCSCEEEEECCT--------TCCEEEEECCCSGGGGG-------GGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe--e-eceeeEeEEEeccC--------CeeEEEEeeccchhhhh-------hHhh
Confidence            68999999999999999999987532  1 12222222233322        24688999999765422       2334


Q ss_pred             hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      ....++.+++++|.++.........++...... ....+.|+++++||+|+.....
T Consensus        64 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~~~~~  118 (166)
T d2qtvb1          64 YFPEVNGIVFLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNAVS  118 (166)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSSSCCC
T ss_pred             hhhheeeeeeeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEeccccccccCC
Confidence            567899999999998866555544444444332 3446789999999999976543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.1e-12  Score=114.71  Aligned_cols=119  Identities=18%  Similarity=0.095  Sum_probs=81.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      .+|++||.+|||||||++++...+... .++.|. .+-..-.+...      .....+.+|||+|..+..    .+   .
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~-~~~~t~~~~~~~~~i~~~------~~~~~l~i~d~~g~~~~~----~~---~   69 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTIN------EHTVKFEIWDTAGQERFA----SL---A   69 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEET------TEEEEEEEEEECCSGGGG----GG---H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCc-cccccccceeeccccccc------cccccccccccCCchhHH----HH---H
Confidence            489999999999999999998876322 222221 11111122211      112479999999976542    12   2


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      ..++..+|++++|+|.+++.+.+....++.++..+..  ...|+++|.||+|+.+.
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~v~nk~d~~~~  123 (170)
T d1ek0a_          70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDMLQE  123 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGS
T ss_pred             HHHHhccceEEEEEeCCcccchhhhhhhhhhhccccc--cccceeeeecccccccc
Confidence            3457889999999999988878877777776665543  45789999999998643

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.8e-13  Score=117.59  Aligned_cols=118  Identities=19%  Similarity=0.144  Sum_probs=78.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.+|||||||++++...+. ..++..|..+..........      ....+.+|||+|..+...    +   ..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~~~----~---~~   69 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGG------EPYTLGLFDTAGQEDYDR----L---RP   69 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGGTT----T---GG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-CCCcCCceeeecceeEeeCC------ceeeeeccccccchhhhh----h---hh
Confidence            4899999999999999999987652 23333232221111111111      124689999999865421    2   22


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEM  407 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~  407 (421)
                      .++..+|++++|+|++++++++.+.. +...+..+.   .+.|+++|.||+|+.+.
T Consensus        70 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~~~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          70 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDD  122 (191)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECGGGGGC
T ss_pred             hcccccceeecccccchHHHHHHHHHHHHHHHhhcC---CCCceEEEecccccccc
Confidence            44678999999999998877766654 333444433   46899999999998654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.29  E-value=3.5e-12  Score=111.05  Aligned_cols=120  Identities=19%  Similarity=0.212  Sum_probs=76.3

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|+|.||||||||+++|.+.+...       ..+..+.....    ......++.++|+++....       ....
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~-------~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~-------~~~~   76 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVVH-------TSPTIGSNVEE----IVINNTRFLMWDIGGQESL-------RSSW   76 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEE-------EECCSCSSCEE----EEETTEEEEEEECCC-----------CGGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCc-------cccccceeEEE----EeecceEEEEecccccccc-------ccch
Confidence            3689999999999999999999876432       11111110000    0012347899999986543       2234


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      ..++..++++++|+|.++................ .......|+++|+||+|+......
T Consensus        77 ~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~  134 (177)
T d1zj6a1          77 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLA-HEDLRKAGLLIFANKQDVKECMTV  134 (177)
T ss_dssp             HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHT-SGGGTTCEEEEEEECTTSTTCCCH
T ss_pred             hhhhccceeeeeecccccccchhhhhhhhhhhhh-cccccceEEEEEEEcccccccCcH
Confidence            4567889999999999987766554333332222 223357899999999999776543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=2.6e-12  Score=113.96  Aligned_cols=117  Identities=17%  Similarity=0.158  Sum_probs=77.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|+|.++||||||++++...+. ...+..|..+.....+..+.      ....+.+||++|......    +.   .
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~D~~g~~~~~~----~~---~   68 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDT------QRIELSLWDTSGSPYYDN----VR---P   68 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEECSS------CEEEEEEEEECCSGGGTT----TG---G
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-CCccCCceeecccccccccc------eEEeeccccccccccccc----cc---c
Confidence            4789999999999999999987653 22333222222222222211      124688999999765422    11   2


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHH-HHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTV-KEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l-~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..++.+|++++|+|++++.+++....+ ...+..+.   .+.|+++|.||+|+..
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~  120 (179)
T d1m7ba_          69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRT  120 (179)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGG
T ss_pred             chhhhhhhhheeeecccCCCHHHHHHHHHHHHhccC---CcceEEEEEecccccc
Confidence            347889999999999987766655433 34445444   3689999999999864

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=1.5e-11  Score=117.49  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=81.3

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCC---CC---ccC------C------CCeeeeccceeecCCCCCCccccccceE
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAK---PD---IAD------Y------PFTTLMPNLGRLDGDPTLGAEKYSSEAT  330 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~---~~---ia~------~------pfTTl~p~~g~v~~~~~~~~~~~~~~i~  330 (421)
                      ++.+.+|+++|+.++|||||+.+|.-..   .+   +.+      +      -..|+......+..        -+.+++
T Consensus         3 ~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~--------~~~~~n   74 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--------KDHRIN   74 (276)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE--------TTEEEE
T ss_pred             hhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc--------CCeEEE
Confidence            4566789999999999999999985321   11   111      0      01122222222221        245799


Q ss_pred             EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      |+||||+.+...       .....+..+|..|+|||+.+....+. +.+|+.++.     .+.|.++++||+|...++
T Consensus        75 ~iDtPG~~dF~~-------e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~-----~~lP~i~fINKmDr~~ad  139 (276)
T d2bv3a2          75 IIDAPGHVDFTI-------EVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEK-----YKVPRIAFANKMDKTGAD  139 (276)
T ss_dssp             EECCCSSSSCST-------THHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHT-----TTCCEEEEEECTTSTTCC
T ss_pred             EecCCchhhhHH-------HHHHHHHhhhheEEeccccCCcchhH-HHHHHHHHH-----cCCCEEEEEecccccccc
Confidence            999999987632       34566788999999999998765444 556677776     369999999999987654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.22  E-value=3.4e-11  Score=111.40  Aligned_cols=127  Identities=22%  Similarity=0.147  Sum_probs=76.8

Q ss_pred             hhhhceecccCCCCCChhHHHHHHhcCCCCc-----------cCCCCeeeeccceee----------cCCCC----CCcc
Q 014655          269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------ADYPFTTLMPNLGRL----------DGDPT----LGAE  323 (421)
Q Consensus       269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-----------a~~pfTTl~p~~g~v----------~~~~~----~~~~  323 (421)
                      -+...+|+++|..++|||||+++|+.....+           +...++|.+.....+          .....    ....
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            3556789999999999999999996322111           112222221111000          00000    0000


Q ss_pred             ccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCC-CEEEEEeCC
Q 014655          324 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-PFIVVLNKI  402 (421)
Q Consensus       324 ~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k-P~IIVlNK~  402 (421)
                      .....+.++|+||+.+.       ....++-+..+|++++|||+......+..+. +..+..     .+. .+|+++||+
T Consensus        86 ~~~~~~~iiD~PGH~df-------v~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~~~-----~gv~~iiv~vNK~  152 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIASL-----LGIKHIVVAINKM  152 (222)
T ss_dssp             CSSEEEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHHHH-----TTCCEEEEEEECT
T ss_pred             ccceEEEEEeccchhhh-------hhhhccccccCceEEEEeccccCcccchHHH-HHHHHH-----cCCCEEEEEEEcc
Confidence            11347999999998664       4556677889999999999998766655543 334444     344 478999999


Q ss_pred             CCCCCC
Q 014655          403 DLPEMY  408 (421)
Q Consensus       403 Dl~~~~  408 (421)
                      |+.+..
T Consensus       153 D~~~~~  158 (222)
T d1zunb3         153 DLNGFD  158 (222)
T ss_dssp             TTTTSC
T ss_pred             cccccc
Confidence            998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.17  E-value=3.2e-11  Score=114.70  Aligned_cols=113  Identities=24%  Similarity=0.212  Sum_probs=76.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcCC---CC---ccCC------------CCeeeeccceeecCCCCCCccccccceEEec
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAK---PD---IADY------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD  333 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~---~~---ia~~------------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD  333 (421)
                      +.+|+++|+.++|||||+.+|....   ..   +.+.            -..|+......+.        +-+.++.++|
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~--------~~~~~~n~iD   73 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL--------FRGHRVFLLD   73 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE--------ETTEEEEEEE
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccc--------ccccceeEEc
Confidence            5679999999999999999984321   11   1110            0112222222222        1235799999


Q ss_pred             CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      |||+.+.       .......+.-+|..|+|||+..+...+..+ +++.++.     .+.|.++++||+|..
T Consensus        74 tPGh~dF-------~~e~~~al~~~D~avlvvda~~Gv~~~t~~-~~~~~~~-----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          74 APGYGDF-------VGEIRGALEAADAALVAVSAEAGVQVGTER-AWTVAER-----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             CCCSGGG-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH-----TTCCEEEEEECGGGC
T ss_pred             cCchhhh-------hhhhhhhhcccCceEEEeeccCCccchhHH-HHHhhhh-----ccccccccccccccc
Confidence            9999875       234456788899999999999876655544 5556665     468999999999974

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.16  E-value=5.7e-11  Score=101.28  Aligned_cols=120  Identities=18%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|||.||||||||+++|++.+... .++  |.......+...        ...+.++|+++.....       ....
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-------~~~~   67 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEVVT-TIP--TIGFNVETVTYK--------NLKFQVWDLGGLTSIR-------PYWR   67 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCC-CCC--CSSEEEEEEEET--------TEEEEEEEECCCGGGG-------GGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcc-eec--ccceeeeeeccC--------ceEEEEeecccccccc-------ccch
Confidence            479999999999999999999876432 111  211111122211        2468899999875532       1223


Q ss_pred             HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655          353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~  411 (421)
                      .....++.+++++|+.+................ .......|+++|.||+|+.......
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iv~nk~Dl~~~~~~~  125 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE-EEELRKAILVVFANKQDMEQAMTSS  125 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCCHH
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhccchhhhhhh-hhccccceEEEEEeeccccccccHH
Confidence            446778999999999876655444333222221 1223468899999999998765543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.16  E-value=2.8e-11  Score=104.83  Aligned_cols=120  Identities=25%  Similarity=0.329  Sum_probs=73.8

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|+|||.+|||||||+++|++..... .+  +|...+...+...        ...+.++|+++......       .+
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-------~~   74 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HV--PTLHPTSEELTIA--------GMTFTTFDLGGHIQARR-------VW   74 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEET--------TEEEEEEEECC----CC-------GG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcc-ee--cccccceeEEEec--------ccccccccccchhhhhh-------HH
Confidence            4689999999999999999999876432 11  1222222223222        23578888888765421       23


Q ss_pred             HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      ......++.+++|+|+++................ .....+.|++++.||.|+......
T Consensus        75 ~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~K~D~~~~~~~  132 (186)
T d1f6ba_          75 KNYLPAINGIVFLVDCADHERLLESKEELDSLMT-DETIANVPILILGNKIDRPEAISE  132 (186)
T ss_dssp             GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHT-CGGGTTSCEEEEEECTTSTTCCCH
T ss_pred             hhhhcccceeeeeeeccCccchHHHHHHHHHhhc-ccccCCCceEEEEeccCccccCCH
Confidence            4557789999999999876544443333333222 223457999999999999775443

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=3.8e-11  Score=104.42  Aligned_cols=124  Identities=19%  Similarity=0.017  Sum_probs=60.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCC-CeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch-h-
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYP-FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-G-  348 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~p-fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl-~-  348 (421)
                      .++|+|+|+||||||||+|+|++.+..+.... .+|...........        .......++++........... . 
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD--------GKRLVDLPGYGYAEVPEEMKRKWQR   87 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET--------TEEEEECCCCC------CCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceeccc--------ccceeeeecccccchhhhhhhhhhh
Confidence            46899999999999999999999876543222 22222211111111        1233444444433322111111 1 


Q ss_pred             --HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          349 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       349 --~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                        .........++.++++.|.......... .+...+..     ...+.++|+||+|+....+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~v~~k~D~~~~~~  144 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD-----SNIAVLVLLTKADKLASGA  144 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCHHH
T ss_pred             hhhhhhhhhhheeEEEEeecccccchhHHH-HHHHHhhh-----ccccccchhhhhhccCHHH
Confidence              1122223444556666666655444333 34444444     3578999999999987544

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.09  E-value=2.7e-10  Score=108.75  Aligned_cols=135  Identities=21%  Similarity=0.236  Sum_probs=72.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCC---------------------CCCc--------
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDP---------------------TLGA--------  322 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~---------------------~~~~--------  322 (421)
                      .++|++||..++|||||||+|++.+.-......||..|....+...+                     ....        
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            37899999999999999999999875332222333323222110000                     0000        


Q ss_pred             ----------cc-------------cccceEEecCCcccccccccC--c----hhHHHHHhcccCCEEE-EEeeCCCCCC
Q 014655          323 ----------EK-------------YSSEATLADLPGLIEGAHLGK--G----LGRNFLRHLRRTRLLV-HVIDAAAENP  372 (421)
Q Consensus       323 ----------~~-------------~~~~i~iiDtPGlie~a~~~~--g----l~~~fL~~i~radvIl-~VvD~s~~~~  372 (421)
                                ..             .-..++++||||++.....+.  .    .......++..++.++ +|+++.....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                      00             013588999999987543211  1    1233456778888654 4455554332


Q ss_pred             hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655          373 VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       373 ~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~  411 (421)
                      .+..   ...++.+++  ...++++|+||+|.....+..
T Consensus       184 ~~~~---~~~~~~~~~--~~~r~i~Vitk~D~~~~~~~~  217 (306)
T d1jwyb_         184 NSDA---LQLAKEVDP--EGKRTIGVITKLDLMDKGTDA  217 (306)
T ss_dssp             TCSH---HHHHHHHCS--SCSSEEEEEECTTSSCSSCCC
T ss_pred             ccHH---HHHHHHhCc--CCCeEEEEEeccccccchhHH
Confidence            2232   234444444  346799999999998765443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=2.4e-10  Score=108.50  Aligned_cols=135  Identities=20%  Similarity=0.224  Sum_probs=77.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecC-----------C-CCCC------------------
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG-----------D-PTLG------------------  321 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~-----------~-~~~~------------------  321 (421)
                      .++|++||..++|||||||+|++.+.-......||..|..-.+..           . ....                  
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            568999999999999999999998753322223343222111100           0 0000                  


Q ss_pred             ------cc--------ccccceEEecCCcccccccccC--c----hhHHHHHhcccCC-EEEEEeeCCCCCChhhHHHHH
Q 014655          322 ------AE--------KYSSEATLADLPGLIEGAHLGK--G----LGRNFLRHLRRTR-LLVHVIDAAAENPVNDYRTVK  380 (421)
Q Consensus       322 ------~~--------~~~~~i~iiDtPGlie~a~~~~--g----l~~~fL~~i~rad-vIl~VvD~s~~~~~~~~~~l~  380 (421)
                            ..        .....++++||||+......+.  .    +....+.++..++ ++++|.++..........   
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~---  182 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL---  182 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH---
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH---
Confidence                  00        0013489999999987543322  1    1122345566666 555666665443333322   


Q ss_pred             HHHHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655          381 EELRMYNPDYLERPFIVVLNKIDLPEMYDDS  411 (421)
Q Consensus       381 ~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~  411 (421)
                      ..++.+++  ...++++|+||+|+.+..+..
T Consensus       183 ~~~~~~~~--~~~r~i~Vltk~D~~~~~~~~  211 (299)
T d2akab1         183 KIAKEVDP--QGQRTIGVITKLDLMDEGTDA  211 (299)
T ss_dssp             HHHHHHCT--TCSSEEEEEECGGGSCTTCCC
T ss_pred             HHHHHhCc--CCCceeeEEeccccccchhhH
Confidence            33444443  346899999999998765443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.03  E-value=1.6e-10  Score=106.37  Aligned_cols=117  Identities=21%  Similarity=0.174  Sum_probs=69.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-------------------------------cCCCCeeeeccceeecCCCCCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLG  321 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~~~~  321 (421)
                      .+|+++|..++|||||+.+|+...-.+                               ....+.|.......++..    
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~----   79 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK----   79 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS----
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecC----
Confidence            479999999999999999985210000                               001122222222222222    


Q ss_pred             ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC------ChhhHHHHHHHHHhcCCCCCCCCE
Q 014655          322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERPF  395 (421)
Q Consensus       322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~kP~  395 (421)
                          ...+.++||||+.+.       .....+.+.-||..|+|||+....      .+.+....+..+..+    .-.++
T Consensus        80 ----~~~i~iiDtPGH~df-------~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~----~~~~i  144 (224)
T d1jnya3          80 ----KYFFTIIDAPGHRDF-------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM----GLDQL  144 (224)
T ss_dssp             ----SCEEEECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT----TCTTC
T ss_pred             ----CceeEEeeCCCcHHH-------HHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh----CCCce
Confidence                347999999998654       334556678899999999998752      122222222233332    22568


Q ss_pred             EEEEeCCCCCCCC
Q 014655          396 IVVLNKIDLPEMY  408 (421)
Q Consensus       396 IIVlNK~Dl~~~~  408 (421)
                      |+++||+|+....
T Consensus       145 Iv~iNK~D~~~~~  157 (224)
T d1jnya3         145 IVAVNKMDLTEPP  157 (224)
T ss_dssp             EEEEECGGGSSST
T ss_pred             EEEEEcccCCCcc
Confidence            8899999997643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=9.6e-11  Score=109.49  Aligned_cols=116  Identities=19%  Similarity=0.176  Sum_probs=73.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCc-----------------cCC--------------CCeeeeccceeecCCCCCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDI-----------------ADY--------------PFTTLMPNLGRLDGDPTLG  321 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-----------------a~~--------------pfTTl~p~~g~v~~~~~~~  321 (421)
                      .+|+++|+.++|||||+.+|+-.--.+                 ...              .+.|.+.....+...    
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----   82 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP----   82 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS----
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC----
Confidence            489999999999999999985210000                 011              122333333333322    


Q ss_pred             ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC------ChhhHHHHHHHHHhcCCCCCCCC-
Q 014655          322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERP-  394 (421)
Q Consensus       322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~kP-  394 (421)
                          ..++.|+||||+.+.       .....+-+..+|+.|+|||+....      ...+-+..+..++.     .+.| 
T Consensus        83 ----~~~i~iiDtPGH~df-------~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~-----~gv~~  146 (239)
T d1f60a3          83 ----KYQVTVIDAPGHRDF-------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-----LGVRQ  146 (239)
T ss_dssp             ----SEEEEEEECCCCTTH-------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-----TTCCE
T ss_pred             ----CEEEEEEECCCcHHH-------HHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH-----cCCCe
Confidence                357999999998664       445567788899999999997532      11223333334444     3444 


Q ss_pred             EEEEEeCCCCCCCC
Q 014655          395 FIVVLNKIDLPEMY  408 (421)
Q Consensus       395 ~IIVlNK~Dl~~~~  408 (421)
                      +|+++||||+.+.+
T Consensus       147 iiv~iNKmD~~~~d  160 (239)
T d1f60a3         147 LIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEECGGGGTTC
T ss_pred             EEEEEECCCCCCCC
Confidence            77899999998754

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.01  E-value=3e-10  Score=106.34  Aligned_cols=120  Identities=22%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCC--------------c-----------------cCCCCeeeeccceeecCCC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPD--------------I-----------------ADYPFTTLMPNLGRLDGDP  318 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~--------------i-----------------a~~pfTTl~p~~g~v~~~~  318 (421)
                      |....|+++|+.++|||||+.+|.-.--.              .                 ......|.+.....+..  
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~--   99 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--   99 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc--
Confidence            44457999999999999999999321100              0                 00111111111111111  


Q ss_pred             CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC------hhhHHHHHHHHHhcCCCCCC
Q 014655          319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP------VNDYRTVKEELRMYNPDYLE  392 (421)
Q Consensus       319 ~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~------~~~~~~l~~eL~~~~~~l~~  392 (421)
                            -...+.++||||+.+.       .....+-+..+|.+++|||+.....      ..+....+..+..++    -
T Consensus       100 ------~~~~i~~iDtPGH~df-------~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~----i  162 (245)
T d1r5ba3         100 ------EHRRFSLLDAPGHKGY-------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG----I  162 (245)
T ss_dssp             ------SSEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT----C
T ss_pred             ------ccceeeeecccccccc-------hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcC----C
Confidence                  1247999999998664       2334566788999999999987421      123333444444432    2


Q ss_pred             CCEEEEEeCCCCCCCC
Q 014655          393 RPFIVVLNKIDLPEMY  408 (421)
Q Consensus       393 kP~IIVlNK~Dl~~~~  408 (421)
                      +++++++||+|++..+
T Consensus       163 ~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         163 NHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             SSEEEEEECTTSTTCS
T ss_pred             CeEEEEEEcCCCCccc
Confidence            3478999999997543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=2.4e-10  Score=112.15  Aligned_cols=124  Identities=22%  Similarity=0.187  Sum_probs=78.2

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCcc----------C------CCCeeeeccceeecCCC--------CCCcccc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA----------D------YPFTTLMPNLGRLDGDP--------TLGAEKY  325 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia----------~------~pfTTl~p~~g~v~~~~--------~~~~~~~  325 (421)
                      ..+..|+++|+.++|||||+.+|....-.+.          +      .-..|+......+....        .....+-
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            4456799999999999999999952110110          0      01112222111111000        0000011


Q ss_pred             ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      ...+.++||||+.+..       ......++-||.+|+|||+..+...+..+.+...++      .+.|+++|+||+|..
T Consensus        95 ~~~inliDtPGh~dF~-------~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~------~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG------ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHH-------HHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH------cCCCeEEEEECcccc
Confidence            2358999999998763       345577788999999999998877777666655554      368999999999975


Q ss_pred             C
Q 014655          406 E  406 (421)
Q Consensus       406 ~  406 (421)
                      .
T Consensus       162 ~  162 (341)
T d1n0ua2         162 L  162 (341)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.8e-10  Score=101.91  Aligned_cols=115  Identities=17%  Similarity=0.208  Sum_probs=68.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF  351 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f  351 (421)
                      ..+|.++|.+|||||||++++.-.+    .+ ..|.......+...        ...+.++|++|....       ...+
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~~----~~-~pTiG~~~~~~~~~--------~~~~~~~D~~gq~~~-------~~~~   61 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRIIH----GQ-DPTKGIHEYDFEIK--------NVPFKMVDVGGQRSE-------RKRW   61 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH----SC-CCCSSEEEEEEEET--------TEEEEEEEECC--------------C
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC----CC-CCeeeeEEEEEeee--------eeeeeeecccceeee-------cccc
Confidence            3689999999999999999994211    11 11332222233332        247899999997543       1223


Q ss_pred             HHhcccCCEEEEEeeCCCCCCh-------hhHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCC
Q 014655          352 LRHLRRTRLLVHVIDAAAENPV-------NDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       352 L~~i~radvIl~VvD~s~~~~~-------~~~~~l~~eL~~~--~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ..+.+.++.+++|+|.++....       ..+.....++...  .....+.|+++|+||+|+.+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          62 FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             cccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            3456788999999999875332       1222222222211  12235789999999999753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.85  E-value=1e-09  Score=100.29  Aligned_cols=114  Identities=19%  Similarity=0.202  Sum_probs=72.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +...+|.|+|..|||||||++++...+.      .+|.......+...        ...+.++|+.|....       ..
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~------~pTiG~~~~~~~~~--------~~~~~~~D~~Gq~~~-------r~   62 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV------VLTSGIFETKFQVD--------KVNFHMFDVGGQRDE-------RR   62 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC------CCCCSCEEEEEEET--------TEEEEEEECCCSTTT-------TT
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc------CCCCCeEEEEEEEC--------cEEEEEEecCcccee-------cc
Confidence            4567999999999999999999964432      12322222222222        247899999997543       22


Q ss_pred             HHHHhcccCCEEEEEeeCCCCCC-----------hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENP-----------VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~-----------~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      .+....+.++++++|+|.++.+.           .+....+...+.  .+...+.|+++++||+|+.+
T Consensus        63 ~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~--~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          63 KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN--NRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             GGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT--CGGGSSCEEEEEEECHHHHH
T ss_pred             chhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhc--ChhhCCCcEEEEechhhhhh
Confidence            34455788999999999886321           111222222222  12335789999999999864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=5.9e-10  Score=97.56  Aligned_cols=109  Identities=14%  Similarity=0.147  Sum_probs=69.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|+|||..|||||||+++|...+.     |  |.......+...        ...+.++||.|....       ...+.
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~-----~--t~~~~~~~~~~~--------~~~~~i~D~~Gq~~~-------~~~~~   60 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHE-----A--GTGIVETHFTFK--------DLHFKMFDVGGQRSE-------RKKWI   60 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHS-----C--CCSEEEEEEEET--------TEEEEEEEECCSGGG-------GGGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-----C--CccEEEEEEEee--------eeeeeeecccccccc-------ccchh
Confidence            4899999999999999999975431     1  111111122221        247899999997654       22233


Q ss_pred             HhcccCCEEEEEeeCCCCCChh-----------hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENPVN-----------DYRTVKEELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~~~-----------~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      .+.+.++++++|+|.++.+...           ....+..++..  ......|+++|+||+|+.
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~--~~~~~~~~~lv~Nk~d~~  122 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN--KWFTDTSIILFLNKKDLF  122 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTC--GGGTTSEEEEEEECHHHH
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcc--cccCCCCEEEEeccchhh
Confidence            5578899999999987654321           11222222221  223468999999999963

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=1.6e-09  Score=95.11  Aligned_cols=113  Identities=17%  Similarity=0.160  Sum_probs=73.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL  352 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL  352 (421)
                      .+|.++|..|||||||++++......   + .+|.......+...        ...+.++|++|.....       ..+.
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~~~---~-~pTiG~~~~~~~~~--------~~~~~~~d~~g~~~~~-------~~~~   63 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIHGS---G-VPTTGIIEYPFDLQ--------SVIFRMVDVGGQRSER-------RKWI   63 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTSS---C-CCCCSCEEEEEECS--------SCEEEEEECCCSTTGG-------GGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC---C-CceeeEEEEEEecc--------ceeeeecccccccccc-------cccc
Confidence            48999999999999999999776531   1 12332222233222        2468999999976532       2233


Q ss_pred             HhcccCCEEEEEeeCCCCCC-----------hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655          353 RHLRRTRLLVHVIDAAAENP-----------VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE  406 (421)
Q Consensus       353 ~~i~radvIl~VvD~s~~~~-----------~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~  406 (421)
                      ...+.++.+++|+|.++...           .+....+...+...  ...+.|+++|+||+|+.+
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~--~~~~~~~~~v~NK~Dl~~  126 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP--WFQNSSVILFLNKKDLLE  126 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG--GGSSSEEEEEEECHHHHH
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhh--hccCccEEEecchhhhhh
Confidence            55688999999999976422           12233344444432  235789999999999853

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.74  E-value=2.4e-09  Score=101.29  Aligned_cols=58  Identities=28%  Similarity=0.413  Sum_probs=38.4

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      ..+|++||.||||||||+|+|.+.+.. +++.|++|.+......           +..+.++||||++..
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-----------~~~~~l~DTPGi~~p  170 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----------GKELELLDTPGILWP  170 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-----------TTTEEEEECCCCCCS
T ss_pred             ceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC-----------CCCeEEecCCCcccc
Confidence            357999999999999999999998864 5999999987654332           347999999999753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.68  E-value=4.3e-09  Score=95.35  Aligned_cols=77  Identities=27%  Similarity=0.319  Sum_probs=45.3

Q ss_pred             ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHH--HHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655          328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVK--EELRMYNPDYLERPFIVVLNKIDLP  405 (421)
Q Consensus       328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~--~eL~~~~~~l~~kP~IIVlNK~Dl~  405 (421)
                      .+.++|+||+.+.... ......+.+. ...+.+++|+|+.............  .......   ...|.++|+||+|+.
T Consensus        96 ~~~~id~~g~~~~~~~-~~~~~~~~~~-~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~  170 (244)
T d1yrba1          96 DYVLIDTPGQMETFLF-HEFGVRLMEN-LPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL  170 (244)
T ss_dssp             SEEEEECCSSHHHHHH-SHHHHHHHHT-SSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred             ceeeeccccchhHHHH-HHHHHHHHhh-ccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeeccccc
Confidence            4899999999864221 1112223222 3467899999987644433332221  1111111   357899999999998


Q ss_pred             CCCC
Q 014655          406 EMYD  409 (421)
Q Consensus       406 ~~~e  409 (421)
                      ..++
T Consensus       171 ~~~~  174 (244)
T d1yrba1         171 SEEE  174 (244)
T ss_dssp             CHHH
T ss_pred             cHHH
Confidence            7643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=7e-08  Score=93.71  Aligned_cols=23  Identities=43%  Similarity=0.665  Sum_probs=20.7

Q ss_pred             hceecccCCCCCChhHHHHHHhc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ...|||.|+||||||||+++|..
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHH
Confidence            45799999999999999999974

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.09  E-value=2.7e-07  Score=89.36  Aligned_cols=23  Identities=39%  Similarity=0.694  Sum_probs=20.8

Q ss_pred             hceecccCCCCCChhHHHHHHhc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ...|+|.|+||||||||+++|..
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=5.5e-06  Score=76.04  Aligned_cols=57  Identities=28%  Similarity=0.324  Sum_probs=37.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC-CCcc-------CCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK-PDIA-------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG  340 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~ia-------~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~  340 (421)
                      ...+|+|.+|||||||+|+|.... .++.       .-..||....+..+.           ..-.++||||+.+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~-----------~gg~iiDTPG~r~~  160 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD-----------FGGYVVDTPGFANL  160 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT-----------TSCEEESSCSSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEEC-----------CCcEEEeCCccccc
Confidence            467899999999999999998753 2221       123455555544442           23589999999764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.44  E-value=1.1e-05  Score=74.25  Aligned_cols=56  Identities=27%  Similarity=0.259  Sum_probs=32.7

Q ss_pred             eecccCCCCCChhHHHHHHhcCCC-Cc---cC----CCCeeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAKP-DI---AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA  341 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~~-~i---a~----~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a  341 (421)
                      ..+|+|.+|||||||+|+|..... ++   +.    --.||....+....            .=.|+||||+.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~------------gg~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS------------GGLVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET------------TEEEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecC------------CCEEEECCcccccc
Confidence            567999999999999999987532 22   11    11344433332221            23688999997643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00011  Score=66.51  Aligned_cols=24  Identities=42%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +-..|.|+.+|||||||+.|....
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            456788999999999999998753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.15  E-value=0.00022  Score=64.34  Aligned_cols=72  Identities=17%  Similarity=0.126  Sum_probs=39.4

Q ss_pred             cceEEecCCcccccccccCchh--HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLG--RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~--~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++++||||......+...+.  ..+.+ .-..+-+++|+|++..  .++...+....+..      .+--+|+||.|.
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~-~~~~~~~~LVl~a~~~--~~~~~~~~~~~~~~------~~~~lI~TKlDe  165 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYE-AIKPDEVTLVIDASIG--QKAYDLASKFNQAS------KIGTIIITKMDG  165 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHH-HHCCSEEEEEEEGGGG--GGHHHHHHHHHHHC------TTEEEEEECTTS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHh-hcCCceEEEEEecccC--cchHHHHhhhhccc------CcceEEEecccC
Confidence            4799999999743211111111  12222 2345778999998753  23444444333331      234567999997


Q ss_pred             CCC
Q 014655          405 PEM  407 (421)
Q Consensus       405 ~~~  407 (421)
                      ...
T Consensus       166 t~~  168 (211)
T d1j8yf2         166 TAK  168 (211)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.10  E-value=0.00036  Score=62.72  Aligned_cols=73  Identities=16%  Similarity=0.123  Sum_probs=39.8

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhc-----ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHL-----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i-----~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                      ..++++||||..........-...+.+.+     ...+-+++|+|++...  ++...+....+...      +-=+|+||
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~~------~~~lI~TK  160 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG------LTGVIVTK  160 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC------CSEEEEEC
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhccC------CceEEEec
Confidence            46899999997543211000011222222     1346789999998643  34444444433322      23568999


Q ss_pred             CCCCCC
Q 014655          402 IDLPEM  407 (421)
Q Consensus       402 ~Dl~~~  407 (421)
                      .|....
T Consensus       161 lDet~~  166 (207)
T d1okkd2         161 LDGTAK  166 (207)
T ss_dssp             TTSSCC
T ss_pred             cCCCCC
Confidence            997543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00076  Score=60.72  Aligned_cols=73  Identities=16%  Similarity=0.124  Sum_probs=39.3

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhccc-----CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR-----TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~r-----advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                      ..++++||||..........-...+.+.++.     .+-+++|+|++..  .++...+....+..      .+-=+|++|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~------~~~~lIlTK  163 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV------GLTGITLTK  163 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS------CCCEEEEEC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhcc------CCceEEEee
Confidence            3689999999654321100001122333332     3578999998753  33333333333332      234678999


Q ss_pred             CCCCCC
Q 014655          402 IDLPEM  407 (421)
Q Consensus       402 ~Dl~~~  407 (421)
                      .|....
T Consensus       164 lDe~~~  169 (211)
T d2qy9a2         164 LDGTAK  169 (211)
T ss_dssp             CTTCTT
T ss_pred             cCCCCC
Confidence            997543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00041  Score=62.62  Aligned_cols=72  Identities=18%  Similarity=0.122  Sum_probs=38.6

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhccc-----CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR-----TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK  401 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~r-----advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK  401 (421)
                      ..++++||||......+...--..+.+.++.     .+-+++|+|++..  .++...+.......      .+-=+|++|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~------~~~~lI~TK  165 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV------NVTGIILTK  165 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS------CCCEEEEEC
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc------CCceEEEec
Confidence            4689999999654321111111223333332     4678999998742  23333333332221      234678999


Q ss_pred             CCCCC
Q 014655          402 IDLPE  406 (421)
Q Consensus       402 ~Dl~~  406 (421)
                      +|...
T Consensus       166 lDe~~  170 (213)
T d1vmaa2         166 LDGTA  170 (213)
T ss_dssp             GGGCS
T ss_pred             ccCCC
Confidence            99754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.88  E-value=0.00025  Score=65.86  Aligned_cols=51  Identities=20%  Similarity=0.320  Sum_probs=37.4

Q ss_pred             HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655          350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY  408 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~  408 (421)
                      ...+.++.+|+||+|+|+..+....+. .+.+.+       .++|+|+|+||+|+.+..
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~~-~l~~~~-------~~Kp~IlVlNK~DLv~~~   58 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRNP-MIEDIL-------KNKPRIMLLNKADKADAA   58 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSCH-HHHHHC-------SSSCEEEEEECGGGSCHH
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCCH-HHHHHH-------cCCCeEEEEECccCCchH
Confidence            456779999999999999876554432 222222       268999999999998754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.69  E-value=0.00012  Score=63.46  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.6

Q ss_pred             ecccCCCCCChhHHHHHHhc
Q 014655          275 VGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~  294 (421)
                      |+++|.||+|||||.++|+.
T Consensus         5 i~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999985

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.66  E-value=0.0014  Score=58.58  Aligned_cols=69  Identities=17%  Similarity=0.145  Sum_probs=39.7

Q ss_pred             cceEEecCCcccccccccCchhHHH--HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL  404 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~f--L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl  404 (421)
                      ..++++||||......   .+...+  +......+-+++|+|++..  .+.........+...      .-=+|++|+|.
T Consensus        93 ~d~vlIDTaGr~~~d~---~~~~el~~~~~~~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~------~~~~I~TKlDe  161 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDE---PLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVG------VTGLVLTKLDG  161 (207)
T ss_dssp             CCEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTC------CCEEEEECGGG
T ss_pred             Ccceeecccccchhhh---hhHHHHHHHHhhcCCceEEEEeccccc--hhHHHHHHHHHhhCC------CCeeEEeecCc
Confidence            4689999999754322   222222  1223456889999998754  344444433333321      23477999996


Q ss_pred             CC
Q 014655          405 PE  406 (421)
Q Consensus       405 ~~  406 (421)
                      ..
T Consensus       162 ~~  163 (207)
T d1ls1a2         162 DA  163 (207)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.00068  Score=56.37  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             hceecccCCCCCChhHHHHHHhc
Q 014655          272 VADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ++-|+|+|++|||||||+++|..
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46789999999999999999974

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.25  E-value=0.00074  Score=56.91  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+|+|+|++|+|||||++.|++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            37999999999999999999874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.73  E-value=0.0018  Score=55.47  Aligned_cols=42  Identities=33%  Similarity=0.489  Sum_probs=32.7

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDG  316 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~  316 (421)
                      |.|+|+++||||||++.|....+.. ...+.||..|..+..++
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G   47 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDG   47 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBT
T ss_pred             EEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCC
Confidence            6799999999999999998766544 44667888776665554

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0086  Score=55.56  Aligned_cols=93  Identities=20%  Similarity=0.084  Sum_probs=49.9

Q ss_pred             hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecC-CCCCCccccccceEEecCCccccccc-ccCchhH
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG-DPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGR  349 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~-~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~  349 (421)
                      ++-|+++|...+|||+|+|.|.+......- .-++...+.|++-. .+..  ......+.++||.|+..... ...--.+
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~-~~~~~~~T~Giw~~~~~~~--~~~~~~~~~lDteG~~~~~~~~~~~~~~  108 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSL-GSTVQSHTKGIWMWCVPHP--KKPGHILVLLDTEGLGDVEKGDNQNDSW  108 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCC-CCSSSCCCCSEEEEEEECS--SSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCcc-CCCCCCCCCceEEEEeecc--CCCCceEEEEecccccccccccchhHHH
Confidence            567899999999999999999986532211 00111112222210 0000  01134689999999976421 1111122


Q ss_pred             HHHHhcccCCEEEEEeeC
Q 014655          350 NFLRHLRRTRLLVHVIDA  367 (421)
Q Consensus       350 ~fL~~i~radvIl~VvD~  367 (421)
                      .|+=.+--++++||=+..
T Consensus       109 i~~l~~llSs~~i~N~~~  126 (277)
T d1f5na2         109 IFALAVLLSSTFVYNSIG  126 (277)
T ss_dssp             HHHHHHHHCSEEEEEEES
T ss_pred             HHHHHHHHhCEEEEeccc
Confidence            333333457777776654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.44  E-value=0.0022  Score=53.24  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+|+|+|.|+||||||.++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0036  Score=55.46  Aligned_cols=43  Identities=28%  Similarity=0.404  Sum_probs=34.3

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCC--c-cCCCCeeeeccceeecCC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPD--I-ADYPFTTLMPNLGRLDGD  317 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~--i-a~~pfTTl~p~~g~v~~~  317 (421)
                      |.|+|+++||||||++.|....+.  . ...+.||+.|..+.+++.
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~   50 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGE   50 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTT
T ss_pred             EEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccc
Confidence            678999999999999999987663  3 456789988877766553

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.37  E-value=0.0027  Score=52.54  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=21.6

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +++|+|+|+|||||||+.++|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0044  Score=53.46  Aligned_cols=43  Identities=23%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGD  317 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~  317 (421)
                      |.|+|+++|||+||++.|....+..  ...+.||..|..+.+++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~   50 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGK   50 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCc
Confidence            7899999999999999998776542  456788888777776653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0042  Score=53.56  Aligned_cols=42  Identities=33%  Similarity=0.464  Sum_probs=31.9

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDG  316 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~  316 (421)
                      |+|+|+++|||+||++.|....+..  ...+.||..|..+...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g   47 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNG   47 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCC
Confidence            7899999999999999998776532  34567777766665543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.15  E-value=0.0034  Score=52.76  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=18.1

Q ss_pred             ecccCCCCCChhHHHHHHhc
Q 014655          275 VGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ++|+|++|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.0048  Score=53.49  Aligned_cols=42  Identities=40%  Similarity=0.467  Sum_probs=32.7

Q ss_pred             ecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDG  316 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~  316 (421)
                      |+|+|+++||||||+++|....+..  ...+.||..+..+...+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g   46 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDG   46 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccC
Confidence            7899999999999999998765543  56778887776665543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.23  E-value=0.0084  Score=48.75  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=18.9

Q ss_pred             ecccCCCCCChhHHHHHHhcCC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      |.|.|.|+||||||.+.|....
T Consensus         5 Iii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6789999999999999986543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.14  E-value=0.0094  Score=49.31  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+|+|.|+|+|||||+.+.|...
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.0062  Score=55.52  Aligned_cols=31  Identities=32%  Similarity=0.419  Sum_probs=25.6

Q ss_pred             hHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          266 ELILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       266 ~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .+.++..-.|+|||..+||||||++.|.+--
T Consensus        23 sl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          23 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3455555689999999999999999999854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.88  E-value=0.011  Score=48.44  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=19.1

Q ss_pred             ecccCCCCCChhHHHHHHhcC
Q 014655          275 VGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      |.|+|+|+|||||+.++|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.0074  Score=54.48  Aligned_cols=32  Identities=38%  Similarity=0.339  Sum_probs=26.0

Q ss_pred             hHHhhhhceecccCCCCCChhHHHHHHhcCCC
Q 014655          266 ELILRVVADVGLVGLPNAGKSTLLAAITHAKP  297 (421)
Q Consensus       266 ~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~  297 (421)
                      .++++..--++|+|+.+||||||++.|++-.+
T Consensus        19 sl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~   50 (231)
T d1l7vc_          19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS   50 (231)
T ss_dssp             EEEEETTCEEECBCCTTSSHHHHHHHHHTSCC
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34555555799999999999999999998643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.74  E-value=0.012  Score=48.82  Aligned_cols=20  Identities=25%  Similarity=0.376  Sum_probs=18.1

Q ss_pred             ecccCCCCCChhHHHHHHhc
Q 014655          275 VGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~  294 (421)
                      |+|.|.|||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.011  Score=48.65  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=18.9

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .|.|.|.||+|||||+.++..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.72  E-value=0.011  Score=49.42  Aligned_cols=23  Identities=43%  Similarity=0.621  Sum_probs=20.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ++|.|+|+|+|||||+-+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.51  E-value=0.11  Score=45.43  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+.+.|.|+||+||||++.++...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            446889999999999999998764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.48  E-value=0.0078  Score=53.10  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .++..--++|+|+.|||||||++.|++-.
T Consensus        23 ~i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          23 TIEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            34444478999999999999999999853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.48  E-value=0.0084  Score=54.57  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.++..-.|+|+|+.+||||||++.|.+-
T Consensus        23 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          23 FEAQPNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            44455558999999999999999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.0086  Score=54.80  Aligned_cols=30  Identities=33%  Similarity=0.356  Sum_probs=25.0

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..-.|+|||..+||||||++.|.+-.
T Consensus        35 l~i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          35 FTLRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            445555589999999999999999998854

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.34  E-value=0.016  Score=48.62  Aligned_cols=22  Identities=45%  Similarity=0.643  Sum_probs=19.6

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +|.|+|.|+|||||+...|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.33  E-value=0.015  Score=47.71  Aligned_cols=24  Identities=25%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             hhceecccCCCCCChhHHHHHHhc
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ...-|.|+|+|||||||+-++|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.30  E-value=0.043  Score=49.48  Aligned_cols=51  Identities=18%  Similarity=0.082  Sum_probs=33.9

Q ss_pred             cccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655          355 LRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD  410 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~  410 (421)
                      +...|.+++|+.+.++++ ...++.++-..+.     .+.+.+||+||+||.++.+.
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~-----~~i~pvIvlnK~DL~~~~~~   59 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA-----NDIQPIICITKMDLIEDQDT   59 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT-----TTCEEEEEEECGGGCCCHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEecccccccHHH
Confidence            467899999999876543 2233333323332     46788999999999876543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.011  Score=53.62  Aligned_cols=30  Identities=37%  Similarity=0.328  Sum_probs=24.1

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--++|+|+.+||||||++.|++-.
T Consensus        21 l~i~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          21 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            334444479999999999999999998854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.12  E-value=0.0092  Score=54.66  Aligned_cols=30  Identities=37%  Similarity=0.407  Sum_probs=24.4

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.++..-.|+|||+.+||||||++.|.+-.
T Consensus        36 l~i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          36 LKIPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            344444589999999999999999998753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.017  Score=46.39  Aligned_cols=22  Identities=36%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|.|+|+|+|||||+-+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.06  E-value=0.016  Score=47.77  Aligned_cols=21  Identities=38%  Similarity=0.574  Sum_probs=18.9

Q ss_pred             ecccCCCCCChhHHHHHHhcC
Q 014655          275 VGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      |.|+|+|+|||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999999764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.02  E-value=0.011  Score=53.53  Aligned_cols=29  Identities=28%  Similarity=0.329  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...--++|+|+.+||||||++.|.+-.
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            34444479999999999999999998854

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.98  E-value=0.012  Score=53.64  Aligned_cols=30  Identities=27%  Similarity=0.296  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++...--++|+|+.+||||||++.|++-.
T Consensus        27 l~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          27 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            344444479999999999999999999854

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.95  E-value=0.0094  Score=55.44  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=25.7

Q ss_pred             hhHHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          265 LELILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.+.++..-.|+|+|+.+||||||++.|++-
T Consensus        55 isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          55 INLNIEKGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            3455556668999999999999999999885

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.054  Score=49.83  Aligned_cols=79  Identities=19%  Similarity=0.275  Sum_probs=46.0

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +.-..+.|||.|++|||+++..|...-.. .+.|     +.             .....+.-.|+..++.+......+..
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~ri~~-~~vp-----~~-------------l~~~~i~~l~~~~liag~~~~g~~e~   97 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQ-GDVP-----EV-------------MADCTIYSLDIGSLLAGTKYRGDFEK   97 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHH-TCSC-----GG-------------GTTCEEEECCCC---CCCCCSSCHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHHHHh-CCcc-----cc-------------cccceeEEeeechHhccCccchhHHH
Confidence            34467999999999999999998753110 0000     00             01235677787777776544333333


Q ss_pred             ---HHHHhcccCCEEEEEeeC
Q 014655          350 ---NFLRHLRRTRLLVHVIDA  367 (421)
Q Consensus       350 ---~fL~~i~radvIl~VvD~  367 (421)
                         ..+..+...+-+|+++|-
T Consensus        98 r~~~i~~~~~~~~~iIlfiDe  118 (268)
T d1r6bx2          98 RFKALLKQLEQDTNSILFIDE  118 (268)
T ss_dssp             HHHHHHHHHSSSSCEEEEETT
T ss_pred             HHHHHHHHhhccCCceEEecc
Confidence               345556667767777774

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.84  E-value=0.012  Score=53.52  Aligned_cols=29  Identities=34%  Similarity=0.306  Sum_probs=23.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++..--++|+|+.+||||||++.|++-.
T Consensus        28 ~i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          28 KVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34444468999999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.83  E-value=0.021  Score=48.34  Aligned_cols=22  Identities=41%  Similarity=0.631  Sum_probs=19.9

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +|.|+|+|+|||||+...|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.73  E-value=0.013  Score=53.19  Aligned_cols=29  Identities=31%  Similarity=0.329  Sum_probs=23.6

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++..--++|+|+.+||||||++.|++..
T Consensus        24 ~v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          24 EIEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33334468999999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.58  E-value=0.014  Score=53.17  Aligned_cols=30  Identities=27%  Similarity=0.246  Sum_probs=24.6

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--++|+|+.+||||||++.|++-.
T Consensus        24 l~i~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            344444479999999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.48  E-value=0.022  Score=46.67  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.0

Q ss_pred             ecccCCCCCChhHHHHHHhcCC
Q 014655          275 VGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      |.|.|.|+|||||+.++|...-
T Consensus         6 I~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            5677999999999999998753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.39  E-value=0.026  Score=48.00  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .+|.|+|+|+|||||+...|..
T Consensus         4 ~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999975

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.37  E-value=0.092  Score=47.18  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .|.|.|+||+|||+|.++|.+.
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            5899999999999999999753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.34  E-value=0.025  Score=47.29  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.5

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +|.|+|+|||||||+-+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.34  E-value=0.024  Score=51.47  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             eecccCCCCCChhHHHHHHhcCC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      -++|+|+.+||||||++.|.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999999854

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.29  E-value=0.025  Score=48.13  Aligned_cols=22  Identities=41%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      =|.++|.|+||||||...|...
T Consensus        16 liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          16 VVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4788999999999999999653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.25  E-value=0.016  Score=52.93  Aligned_cols=29  Identities=28%  Similarity=0.235  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .++..--++|+|+.+||||||++.|++..
T Consensus        26 ~v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          26 SVNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            34444468999999999999999999864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.2  Score=45.23  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||+|+++|...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            34889999999999999999853

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.19  E-value=0.029  Score=47.30  Aligned_cols=23  Identities=35%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+|.|+|+|+|||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=92.16  E-value=0.028  Score=48.37  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=21.2

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..+|.|+|+|+|||||+...|+..
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.025  Score=47.55  Aligned_cols=23  Identities=35%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+|.|+|+|+|||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.028  Score=46.23  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.5

Q ss_pred             ecccCCCCCChhHHHHHHhcC
Q 014655          275 VGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      |.|+|.|+|||||+.++|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.00  E-value=0.025  Score=48.19  Aligned_cols=22  Identities=36%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|.|+|+|+|||||+...|+..
T Consensus         8 iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           8 VVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.99  E-value=0.012  Score=53.17  Aligned_cols=29  Identities=21%  Similarity=0.208  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +++..--++|+|+.+||||||++.|++-.
T Consensus        22 ~i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          22 KVESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            34444469999999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.98  E-value=0.026  Score=47.35  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=19.2

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -|||-|.++||||||.++|..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.95  E-value=0.11  Score=47.10  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.5

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|.|+||+|||+|++++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            35889999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.91  E-value=0.019  Score=52.73  Aligned_cols=30  Identities=30%  Similarity=0.443  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--++|+|..+||||||+++|.+-.
T Consensus        23 ~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          23 LQARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            344444479999999999999999998864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.90  E-value=0.012  Score=54.07  Aligned_cols=30  Identities=33%  Similarity=0.451  Sum_probs=24.5

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      +.++..-.|+|+|..+||||||++.|.+-.
T Consensus        39 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          39 LSIEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            344455589999999999999999998753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.79  E-value=0.027  Score=47.89  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+|.|+|+|||||||+...|...
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.016  Score=52.65  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=23.8

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++...--++|+|+.+||||||++.|.+-.
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          27 HVPAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            34444468999999999999999998854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.64  E-value=0.036  Score=46.83  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+|.|+|+|+|||||+...|...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.38  E-value=0.033  Score=49.26  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             ecccCCCCCChhHHHHHHhcC
Q 014655          275 VGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      |.|+|+||+|||||..+|.+.
T Consensus        35 ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999774

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.19  E-value=0.013  Score=53.42  Aligned_cols=30  Identities=23%  Similarity=0.400  Sum_probs=25.1

Q ss_pred             HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655          267 LILRVVADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ++++..--++|+|+.+||||||++.|.+-.
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          26 INIENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            445555579999999999999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.12  E-value=0.099  Score=46.80  Aligned_cols=50  Identities=16%  Similarity=0.115  Sum_probs=33.7

Q ss_pred             cccCCEEEEEeeCCCCCCh-hhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655          355 LRRTRLLVHVIDAAAENPV-NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD  409 (421)
Q Consensus       355 i~radvIl~VvD~s~~~~~-~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e  409 (421)
                      +...|.+++|+.+..|+.. ..++.++-..+.     .+.+.+||+||+||.+.++
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~-----~~i~pvIvlnK~DL~~~~~   58 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYDEDD   58 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHH
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEeCcccCCHHH
Confidence            4677999999988765542 223333333333     4688999999999987554

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.02  E-value=0.045  Score=46.71  Aligned_cols=28  Identities=29%  Similarity=0.312  Sum_probs=23.1

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .++...-|.|+|+|+|||||+...|+..
T Consensus         4 ~~~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           4 KLKKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HHHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3455566889999999999999999764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.023  Score=47.76  Aligned_cols=22  Identities=41%  Similarity=0.546  Sum_probs=19.4

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      ..|.|+|+|+|||||+-+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999964

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=90.64  E-value=0.21  Score=44.84  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=20.0

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|.|.|+||+|||+|.++|...
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999999863

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.63  E-value=0.042  Score=45.46  Aligned_cols=20  Identities=40%  Similarity=0.624  Sum_probs=17.2

Q ss_pred             ecccCCCCCChhHHHHHHhc
Q 014655          275 VGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~  294 (421)
                      |.|.|.|+|||||+++.|..
T Consensus         4 ivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45679999999999999964

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.051  Score=46.00  Aligned_cols=22  Identities=41%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      +.|.|+|+|+|||||....|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.56  E-value=0.21  Score=44.83  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|.|.|+||+|||+|++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            5899999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.49  E-value=0.055  Score=50.92  Aligned_cols=30  Identities=23%  Similarity=0.314  Sum_probs=24.9

Q ss_pred             HhhhhceecccCCCCCChhHHHHHHhcCCC
Q 014655          268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP  297 (421)
Q Consensus       268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~  297 (421)
                      -++....|.+.|.+|+|||||+++|...-+
T Consensus       162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence            345566799999999999999999987543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.47  E-value=0.052  Score=47.70  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=21.7

Q ss_pred             hhhceecccCCCCCChhHHHHHHhc
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      +.-..+.|||.|++|||+++..|..
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHH
Confidence            3556899999999999999999875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=90.44  E-value=0.052  Score=45.34  Aligned_cols=21  Identities=19%  Similarity=0.300  Sum_probs=18.7

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .|.|+|+|||||||+-+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            477899999999999999965

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.01  E-value=0.06  Score=45.79  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.3

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +-|.|+|+|+|||||+...|+..
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=88.90  E-value=0.071  Score=46.70  Aligned_cols=24  Identities=38%  Similarity=0.574  Sum_probs=21.1

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ...|.|.|+||+||||+.+++.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999863

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=88.71  E-value=0.043  Score=45.19  Aligned_cols=19  Identities=47%  Similarity=0.489  Sum_probs=17.0

Q ss_pred             ecccCCCCCChhHHHHHHh
Q 014655          275 VGLVGLPNAGKSTLLAAIT  293 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt  293 (421)
                      .+|+|..||||||||.||.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4678999999999999985

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.28  E-value=0.43  Score=40.73  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=44.2

Q ss_pred             cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCC
Q 014655          327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLP  405 (421)
Q Consensus       327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl~  405 (421)
                      ..++++|+|+-..         ...+..+..+|.+++|+.... ....+...+.+.++.     .+.|++ +|+||.|..
T Consensus       112 ~d~IiiD~~~~~~---------~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~-----~~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         112 FDFILIDCPAGLQ---------LDAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKK-----AGLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSS---------HHHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHH-----TTCEEEEEEEEEETSC
T ss_pred             CCEEEEccccccc---------ccchhhhhhhhcccccccccc-eecchhhHHHHHHhh-----hhhhhhhhhhcccccc
Confidence            4689999998543         234566788999999998752 223344445555555     345654 899999865


Q ss_pred             CCC
Q 014655          406 EMY  408 (421)
Q Consensus       406 ~~~  408 (421)
                      ..+
T Consensus       177 ~~~  179 (237)
T d1g3qa_         177 DRD  179 (237)
T ss_dssp             TTC
T ss_pred             cch
Confidence            443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.096  Score=45.03  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=18.9

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -|||.|.++||||||.+.|..
T Consensus         4 iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999865

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=87.78  E-value=0.14  Score=44.49  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..+.|.|+||+||||++++|...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=87.74  E-value=0.088  Score=45.97  Aligned_cols=24  Identities=38%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             hceecccCCCCCChhHHHHHHhcC
Q 014655          272 VADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       272 i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .+.+.|.|+||+||||+.++|...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            456899999999999999999753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.32  E-value=0.12  Score=44.91  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=19.7

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|+|++++|||||++.+...
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Confidence            45788999999999999998753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.93  E-value=0.12  Score=45.26  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=18.2

Q ss_pred             ecccCCCCCChhHHHHHHhcC
Q 014655          275 VGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +.|.|+||+|||++++++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            456799999999999999764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=86.78  E-value=0.19  Score=48.40  Aligned_cols=79  Identities=16%  Similarity=0.322  Sum_probs=37.7

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR  349 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~  349 (421)
                      +.-..+.|||.||+|||+++..|...-.. .+.|                  ....+..+.-+|+.-++.++.-.-.+..
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~~i~~-~~vp------------------~~l~~~~i~~ld~~~l~ag~~~~g~~e~  101 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQRIVK-GDVP------------------EGLKGKRIVSLQMGSLLAGAKYRGEFEE  101 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHH-TCSC------------------TTSTTCEEEEECC-----------CHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHHHHHh-CCCC------------------HHHcCceEEEeeHhhhhcccCcchhHHH
Confidence            34457999999999999999877642100 0000                  0011245777888777776543222332


Q ss_pred             H---HHHhcccCC-EEEEEeeC
Q 014655          350 N---FLRHLRRTR-LLVHVIDA  367 (421)
Q Consensus       350 ~---fL~~i~rad-vIl~VvD~  367 (421)
                      .   .+..+...+ -+|++||-
T Consensus       102 r~~~i~~~~~~~~~~~ilfide  123 (387)
T d1qvra2         102 RLKAVIQEVVQSQGEVILFIDE  123 (387)
T ss_dssp             HHHHHHHHHHTTCSSEEEEECC
T ss_pred             HHHHHHHHhccCCCceEEEecc
Confidence            3   344444443 35556663

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=86.04  E-value=0.12  Score=43.52  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|||.|.++|||||+.+.|...
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            35899999999999999998653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=85.43  E-value=0.15  Score=43.26  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=19.4

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      +-|++.|+|+|||||+-..|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34778899999999999999753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.29  E-value=0.15  Score=44.56  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      ..+.|.|+||+||||++.+|.+.-
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999998753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=84.87  E-value=0.17  Score=44.09  Aligned_cols=22  Identities=41%  Similarity=0.604  Sum_probs=19.4

Q ss_pred             ceecccCCCCCChhHHHHHHhc
Q 014655          273 ADVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .-|-|.|+|+||||||.++|..
T Consensus        25 ~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.72  E-value=0.14  Score=43.17  Aligned_cols=24  Identities=29%  Similarity=0.270  Sum_probs=20.8

Q ss_pred             ceecccCCCCCChhHHHHHHhcCC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHAK  296 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~~  296 (421)
                      .-|+|-|..+|||||+++.|...-
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999998654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.46  E-value=0.21  Score=43.19  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=21.6

Q ss_pred             hhceecccCCCCCChhHHHHHHhcC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..+.+.|.|+||+|||||+.+|...
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4467899999999999999999763

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=83.87  E-value=0.22  Score=42.57  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.9

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      .|++-|+|+|||||+...|+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577889999999999999975

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.84  E-value=0.2  Score=42.48  Aligned_cols=20  Identities=30%  Similarity=0.591  Sum_probs=17.9

Q ss_pred             ecccCCCCCChhHHHHHHhc
Q 014655          275 VGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       275 V~LVG~pNaGKSSLLnaLt~  294 (421)
                      |+|-|..||||||+++.|..
T Consensus         3 I~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=83.73  E-value=0.19  Score=46.36  Aligned_cols=23  Identities=13%  Similarity=0.374  Sum_probs=20.6

Q ss_pred             ceecccCCCCCChhHHHHHHhcC
Q 014655          273 ADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       273 ~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      .-|.|+|+||+|||.|.++|...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46899999999999999999864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=83.36  E-value=0.21  Score=43.03  Aligned_cols=22  Identities=36%  Similarity=0.353  Sum_probs=19.5

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|||.|.++|||||+.+.|...
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            4899999999999999998754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.04  E-value=0.23  Score=44.64  Aligned_cols=19  Identities=37%  Similarity=0.616  Sum_probs=17.0

Q ss_pred             cccCCCCCChhHHHHHHhc
Q 014655          276 GLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       276 ~LVG~pNaGKSSLLnaLt~  294 (421)
                      +|||..||||||+|.||.-
T Consensus        28 vlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEECCTTTCSTHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            6899999999999999843

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.58  E-value=0.24  Score=42.58  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             hhceecccCCCCCChhHHHHHHhcC
Q 014655          271 VVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       271 ~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..+.+.|.|+||+||||++.+|.+.
T Consensus        32 ~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          32 NLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChHHHHHHHHHH
Confidence            3456899999999999999999764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.22  E-value=0.29  Score=42.12  Aligned_cols=26  Identities=19%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             hhhceecccCCCCCChhHHHHHHhcC
Q 014655          270 RVVADVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       270 k~i~~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      ..++.+.|.|+||+||||++.+|...
T Consensus        33 ~~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          33 GKLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             TCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCChhHHHHHHHHH
Confidence            34456899999999999999999763

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=80.97  E-value=0.29  Score=41.96  Aligned_cols=22  Identities=36%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             eecccCCCCCChhHHHHHHhcC
Q 014655          274 DVGLVGLPNAGKSTLLAAITHA  295 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~~  295 (421)
                      -|||.|.++|||||+.+.|...
T Consensus         4 iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            4899999999999999998653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.43  E-value=0.34  Score=39.74  Aligned_cols=21  Identities=14%  Similarity=0.208  Sum_probs=18.2

Q ss_pred             eecccCCCCCChhHHHHHHhc
Q 014655          274 DVGLVGLPNAGKSTLLAAITH  294 (421)
Q Consensus       274 ~V~LVG~pNaGKSSLLnaLt~  294 (421)
                      -+.|.|.|++|||+|+..|..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999988764