Citrus Sinensis ID: 014659

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
MDNWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVIDI
cccccccccccccccccEEEEEEcccccccccccccccccccccHHHHHHHcccccEEEEEccccccccccccccccHHHHcccccccEEccccHHHHHHHHcccccccHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccEEEEccccccccccccccEEEEEcccccHHHHHHHHccccccccccccccccEEEEEEccccccccccEEEEcccccccccHHHHHHHccccEEEEEcccccccEEEEccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHcccccEEEEc
cccccccccccccccccEEEEEEccccccccccccHHHHcccccHHHHHHHccccEEEEEEccccccccccccccccccccccccccEEEEEcccHHHHHHHcccccccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcEEEEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHcccEEEEcccccEccccccccEEEEccccccccHHHHHHHHccccccccccccccEEEEEEEEcccccccccEEEcccHHHHHHHHHHHHHccccEEEEEEcccccEEEEEEccccccccccccccEEEEccccEEEccccccccHHHHHHHHHHHHHcccccEEEEc
mdnwklkehpqlsrnnIVAVVVLdgwgefkpdkyncihvadtptmdsfkksapGRWRLLRAhgsavglpteddmgnsevghnalgagrifAQGAKLVDLALASgkiyqdegfnyikpsfetgTLHLIGLlsdggvhsRLDQLQLLLKGASERGAKRIRLHILtdgrdvldgssvgFVETIEKDLAELRGkgvdaqiasgggrmyvtmdryendwdvvkrgwdaqvlgeaphKFKSAVEAVKKLReqpnandqylppfvivdengkavgpivdgdavvtfNFRADRMVMLAKAleyedfdkfdrvrfpkiryagmlqydgelklpshylvsppeidrtsgeylvhngvrtfacsetvkfghvtffwngnrsgyfdsnleeyveipsdsgitfnvqPKMKALEIAERAKKAILSRRFHQVIDI
mdnwklkehpqlsrnniVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRlhiltdgrdvldgssVGFVETIEKDLaelrgkgvdaqiasgggrmyVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLReqpnandqylPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKaleyedfdkfdrvRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKailsrrfhqvidi
MDNWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVIDI
*************RNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSF****PGRWRLLRAHGSAV************VGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAV**********DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF******
***************NIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVIDI
MDNWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVIDI
****KLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVIDI
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MDNWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVIDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query421 2.2.26 [Sep-21-2011]
P35493 556 2,3-bisphosphoglycerate-i N/A no 0.988 0.748 0.846 0.0
Q42908 559 2,3-bisphosphoglycerate-i N/A no 0.988 0.744 0.855 0.0
P30792 559 2,3-bisphosphoglycerate-i N/A no 0.988 0.744 0.834 0.0
Q9M9K1 560 Probable 2,3-bisphosphogl yes no 0.988 0.742 0.834 0.0
O04499 557 2,3-bisphosphoglycerate-i no no 0.985 0.745 0.828 0.0
P35494 559 2,3-bisphosphoglycerate-i N/A no 0.990 0.745 0.824 0.0
O24246 488 2,3-bisphosphoglycerate-i N/A no 0.833 0.719 0.868 0.0
Q72VB8 548 2,3-bisphosphoglycerate-i yes no 0.931 0.715 0.504 1e-104
P59173 548 Probable 2,3-bisphosphogl yes no 0.931 0.715 0.504 1e-104
Q46D52 517 2,3-bisphosphoglycerate-i yes no 0.921 0.750 0.353 9e-61
>sp|P35493|PMGI_RICCO 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2 Back     alignment and function desciption
 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/416 (84%), Positives = 386/416 (92%)

Query: 3   NWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAH 62
            WKL +HP+L +   +A+VVLDGWGE KPD+YNCIHVA+TPTMDSFKK+AP RWRL++AH
Sbjct: 4   TWKLADHPKLPKGKTIAMVVLDGWGEAKPDQYNCIHVAETPTMDSFKKTAPERWRLIKAH 63

Query: 63  GSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG 122
           G+AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+ EGF Y+K  F+ G
Sbjct: 64  GTAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEGEGFKYVKECFDKG 123

Query: 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEK 182
           TLHLIGLLSDGGVHSRLDQLQLLLKGA+E GAKRIR+H+LTDGRDV+DG+SVGF ET+EK
Sbjct: 124 TLHLIGLLSDGGVHSRLDQLQLLLKGAAEHGAKRIRVHVLTDGRDVIDGTSVGFAETLEK 183

Query: 183 DLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKK 242
           DL  LR KGVDAQ+ASGGGRMYVTMDRYENDW+VVKRGWDAQVLGEAP+KFKSAVEA+KK
Sbjct: 184 DLENLREKGVDAQVASGGGRMYVTMDRYENDWNVVKRGWDAQVLGEAPYKFKSAVEAIKK 243

Query: 243 LREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFD 302
           LRE+P ANDQYLPPFVIVDENGK VGPIVDGDAVVT NFRADRMVMLAKALEYE+FD FD
Sbjct: 244 LREEPKANDQYLPPFVIVDENGKPVGPIVDGDAVVTINFRADRMVMLAKALEYENFDTFD 303

Query: 303 RVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVT 362
           RVRFPKI YAGMLQYDGELKLPSHYLVSPPEI+RTSGEYLVHNGV TFACSETVKFGHVT
Sbjct: 304 RVRFPKIHYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVHNGVHTFACSETVKFGHVT 363

Query: 363 FFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQV 418
           FFWNGNRSGYF+  +EEYVEIPSD GITFNVQPKMKA+EIAE+A+ AILS +F QV
Sbjct: 364 FFWNGNRSGYFNPEMEEYVEIPSDVGITFNVQPKMKAIEIAEKARDAILSGKFQQV 419
Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.
Ricinus communis (taxid: 3988)
EC: 5EC: .EC: 4EC: .EC: 2EC: .EC: 1
>sp|Q42908|PMGI_MESCR 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1 Back     alignment and function description
>sp|P30792|PMGI_MAIZE 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1 Back     alignment and function description
>sp|Q9M9K1|PMG2_ARATH Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1 Back     alignment and function description
>sp|O04499|PMG1_ARATH 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3 Back     alignment and function description
>sp|P35494|PMGI_TOBAC 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|O24246|PMGI_PRUDU 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1 Back     alignment and function description
>sp|Q72VB8|GPMI_LEPIC 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=gpmI PE=3 SV=2 Back     alignment and function description
>sp|P59173|GPMI_LEPIN Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=gpmI PE=3 SV=2 Back     alignment and function description
>sp|Q46D52|GPMI1_METBF 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
239056191 559 Putative 2-3 biphosphoglycerate independ 0.988 0.744 0.865 0.0
449459570 559 PREDICTED: 2,3-bisphosphoglycerate-indep 0.988 0.744 0.862 0.0
225439064 559 PREDICTED: 2,3-bisphosphoglycerate-indep 0.988 0.744 0.862 0.0
255557893 560 2,3-bisphosphoglycerate-independent phos 0.988 0.742 0.846 0.0
1346735 556 RecName: Full=2,3-bisphosphoglycerate-in 0.988 0.748 0.846 0.0
3914394 559 RecName: Full=2,3-bisphosphoglycerate-in 0.988 0.744 0.855 0.0
224140653 560 predicted protein [Populus trichocarpa] 0.985 0.741 0.850 0.0
224069046 560 predicted protein [Populus trichocarpa] 0.985 0.741 0.853 0.0
6706331 559 cofactor-independent phosphoglyceromutas 0.988 0.744 0.843 0.0
359480976 552 PREDICTED: 2,3-bisphosphoglycerate-indep 0.971 0.740 0.846 0.0
>gi|239056191|emb|CAQ58628.1| Putative 2-3 biphosphoglycerate independant phosphoglycerate mutase [Vitis vinifera] Back     alignment and taxonomy information
 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/416 (86%), Positives = 390/416 (93%)

Query: 3   NWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAH 62
           +WKL +HP+L +  I+ +VVLDGWGE  PD+YNCIHVADTPTMDS KK AP +WRL++AH
Sbjct: 7   SWKLADHPKLPKGKILGMVVLDGWGEANPDQYNCIHVADTPTMDSLKKGAPEKWRLVKAH 66

Query: 63  GSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG 122
           GSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVD AL SGKIY+ EGF YIK  FETG
Sbjct: 67  GSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDFALDSGKIYEGEGFKYIKECFETG 126

Query: 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEK 182
           TLHLIGLLSDGGVHSR+DQLQLLLKGASE GAKRIR+HILTDGRDVLDGSSVGFVET+E 
Sbjct: 127 TLHLIGLLSDGGVHSRIDQLQLLLKGASENGAKRIRVHILTDGRDVLDGSSVGFVETLEN 186

Query: 183 DLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKK 242
           DLA+LR KGVDAQIASGGGRMYVTMDRYENDW+VVKRGWDAQVLGEAPHKF+SAVEAVKK
Sbjct: 187 DLAKLREKGVDAQIASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFRSAVEAVKK 246

Query: 243 LREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFD 302
           LRE   A+DQY+PPFVIVDENGK VGPIVDGDAVVTFNFRADRMVM+AK+LEYEDFDKFD
Sbjct: 247 LREDTKASDQYIPPFVIVDENGKPVGPIVDGDAVVTFNFRADRMVMIAKSLEYEDFDKFD 306

Query: 303 RVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVT 362
           RVRFPKI YAGMLQYDGELKLP+HYLVSPPEI+RTSGEYLVHNGVRTFACSETVKFGHVT
Sbjct: 307 RVRFPKIHYAGMLQYDGELKLPNHYLVSPPEIERTSGEYLVHNGVRTFACSETVKFGHVT 366

Query: 363 FFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQV 418
           FFWNGNRSGYFD ++EEYVEIPSDSGITFNV+PKMKA+EIAE+A+ AILSR+FHQV
Sbjct: 367 FFWNGNRSGYFDPSMEEYVEIPSDSGITFNVKPKMKAVEIAEKARDAILSRKFHQV 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449459570|ref|XP_004147519.1| PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225439064|ref|XP_002266205.1| PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase isoform 1 [Vitis vinifera] gi|239056171|emb|CAQ58604.1| putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Vitis vinifera] gi|296085815|emb|CBI31139.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557893|ref|XP_002519975.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Ricinus communis] gi|223540739|gb|EEF42299.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Ricinus communis] Back     alignment and taxonomy information
>gi|1346735|sp|P35493.2|PMGI_RICCO RecName: Full=2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Short=BPG-independent PGAM; Short=Phosphoglyceromutase; AltName: Full=PGAM-I gi|474170|emb|CAA49995.1| phosphoglycerate mutase [Ricinus communis] Back     alignment and taxonomy information
>gi|3914394|sp|Q42908.1|PMGI_MESCR RecName: Full=2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Short=BPG-independent PGAM; Short=Phosphoglyceromutase; AltName: Full=PGAM-I gi|602426|gb|AAA86979.1| phosphoglyceromutase [Mesembryanthemum crystallinum] Back     alignment and taxonomy information
>gi|224140653|ref|XP_002323696.1| predicted protein [Populus trichocarpa] gi|222868326|gb|EEF05457.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224069046|ref|XP_002326261.1| predicted protein [Populus trichocarpa] gi|222833454|gb|EEE71931.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|6706331|emb|CAB66002.1| cofactor-independent phosphoglyceromutase [Apium graveolens] Back     alignment and taxonomy information
>gi|359480976|ref|XP_003632547.1| PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase isoform 2 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
TAIR|locus:2077793 560 iPGAM2 "2,3-biphosphoglycerate 0.988 0.742 0.834 1.1e-190
TAIR|locus:2024357 557 iPGAM1 "2,3-biphosphoglycerate 0.985 0.745 0.828 4.7e-190
TIGR_CMR|CPS_4391 520 CPS_4391 "phosphoglycerate mut 0.940 0.761 0.333 1.8e-55
TIGR_CMR|BA_5365 509 BA_5365 "phosphoglycerate muta 0.907 0.750 0.365 5.5e-54
WB|WBGene00019001 539 F57B10.3 [Caenorhabditis elega 0.878 0.686 0.357 1.5e-53
TIGR_CMR|SO_0049 514 SO_0049 "phosphoglycerate muta 0.919 0.752 0.339 3e-53
TIGR_CMR|CHY_0283 506 CHY_0283 "phosphoglycerate mut 0.883 0.735 0.355 4.9e-53
UNIPROTKB|Q9KV22 510 gpmI "2,3-bisphosphoglycerate- 0.931 0.768 0.343 1.3e-52
TIGR_CMR|VC_0336 510 VC_0336 "phosphoglycerate muta 0.931 0.768 0.343 1.3e-52
TIGR_CMR|CBU_1536 519 CBU_1536 "phosphoglycerate mut 0.914 0.741 0.361 2.4e-51
TAIR|locus:2077793 iPGAM2 "2,3-biphosphoglycerate-independent phosphoglycerate mutase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1848 (655.6 bits), Expect = 1.1e-190, P = 1.1e-190
 Identities = 347/416 (83%), Positives = 375/416 (90%)

Query:     3 NWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAH 62
             NWKL +HP+L +   + ++VLDGWGE  PD+YNCIH A TP MDS K   P  WRL++AH
Sbjct:     8 NWKLADHPKLPKGKTIGLIVLDGWGESDPDQYNCIHKAPTPAMDSLKDGKPDTWRLIKAH 67

Query:    63 GSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG 122
             G+AVGLP+EDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+DEGF YI  SFE G
Sbjct:    68 GTAVGLPSEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFKYISQSFEKG 127

Query:   123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEK 182
             T+HLIGLLSDGGVHSRLDQ+QLLLKG +ERGAKRIR+HILTDGRDVLDGSSVGFVET+E 
Sbjct:   128 TVHLIGLLSDGGVHSRLDQVQLLLKGFAERGAKRIRVHILTDGRDVLDGSSVGFVETLEA 187

Query:   183 DLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKK 242
             DLA LR KGVDAQ+ASGGGRMYVTMDRYENDW VVKRGWDAQVLGEAPHKFKSA+EAVK 
Sbjct:   188 DLAALRAKGVDAQVASGGGRMYVTMDRYENDWSVVKRGWDAQVLGEAPHKFKSALEAVKT 247

Query:   243 LREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFD 302
             LR +P ANDQYLP FVIVD+NGKAVGPIVDGDAVVTFNFRADRMVM AKALEY+DFDKFD
Sbjct:   248 LRAEPGANDQYLPSFVIVDDNGKAVGPIVDGDAVVTFNFRADRMVMHAKALEYKDFDKFD 307

Query:   303 RVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVT 362
             RVR P IRYAGMLQYDGELKLPS YLVSPP IDRTSGEYL HNGVRTFACSETVKFGHVT
Sbjct:   308 RVRVPDIRYAGMLQYDGELKLPSRYLVSPPLIDRTSGEYLAHNGVRTFACSETVKFGHVT 367

Query:   363 FFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQV 418
             FFWNGNRSGYF+  LEEYVEIPSDSGI+FNVQPKMKALEIAE+A+ AILS +F QV
Sbjct:   368 FFWNGNRSGYFNEKLEEYVEIPSDSGISFNVQPKMKALEIAEKARDAILSGKFDQV 423
GO:0003824 "catalytic activity" evidence=IEA
GO:0004619 "phosphoglycerate mutase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006007 "glucose catabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0030145 "manganese ion binding" evidence=IEA
GO:0046537 "2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity" evidence=IGI;ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009555 "pollen development" evidence=IGI
GO:0010118 "stomatal movement" evidence=IGI
TAIR|locus:2024357 iPGAM1 "2,3-biphosphoglycerate-independent phosphoglycerate mutase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4391 CPS_4391 "phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5365 BA_5365 "phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
WB|WBGene00019001 F57B10.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0049 SO_0049 "phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0283 CHY_0283 "phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KV22 gpmI "2,3-bisphosphoglycerate-independent phosphoglycerate mutase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0336 VC_0336 "phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1536 CBU_1536 "phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q72VB8GPMI_LEPIC5, ., 4, ., 2, ., 10.50490.93110.7153yesno
Q9M9K1PMG2_ARATH5, ., 4, ., 2, ., 10.83410.98810.7428yesno
Q42908PMGI_MESCR5, ., 4, ., 2, ., 10.85570.98810.7441N/Ano
P35494PMGI_TOBAC5, ., 4, ., 2, ., 10.82490.99040.7459N/Ano
P35493PMGI_RICCO5, ., 4, ., 2, ., 10.84610.98810.7482N/Ano
P59173GPMI_LEPIN5, ., 4, ., 2, ., 10.50490.93110.7153yesno
O24246PMGI_PRUDU5, ., 4, ., 2, ., 10.86890.83370.7192N/Ano
P30792PMGI_MAIZE5, ., 4, ., 2, ., 10.83410.98810.7441N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer5.4.2.10.991
3rd Layer5.4.20.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
26N20_20
SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (551 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00035677001
RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (401 aa)
•  • •• 0.992
GSVIVG00035675001
RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (405 aa)
•  • •• 0.992
GSVIVG00038473001
RecName- Full=Enolase; EC=4.2.1.11; (440 aa)
•  • •• 0.988
GSVIVG00024180001
RecName- Full=Enolase; EC=4.2.1.11; (435 aa)
•  • •• 0.978
GSVIVG00017586001
RecName- Full=Enolase; EC=4.2.1.11; (458 aa)
•  • •• 0.965
GSVIVG00024314001
RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)
•  • •• 0.929
GSVIVG00018496001
RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)
•  • •• 0.928
GSVIVG00021684001
RecName- Full=Enolase; EC=4.2.1.11; (176 aa)
•    •• 0.917
GSVIVG00032695001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (496 aa)
     •• 0.908
GSVIVG00017234001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (496 aa)
     •• 0.908

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
PLN02538 558 PLN02538, PLN02538, 2,3-bisphosphoglycerate-indepe 0.0
PRK05434 507 PRK05434, PRK05434, phosphoglyceromutase; Provisio 1e-141
pfam06415223 pfam06415, iPGM_N, BPG-independent PGAM N-terminus 4e-94
pfam01676 423 pfam01676, Metalloenzyme, Metalloenzyme superfamil 2e-93
COG0696 509 COG0696, GpmI, Phosphoglyceromutase [Carbohydrate 3e-88
TIGR01307 501 TIGR01307, pgm_bpd_ind, 2,3-bisphosphoglycerate-in 4e-88
>gnl|CDD|215295 PLN02538, PLN02538, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Back     alignment and domain information 
 Score =  863 bits (2232), Expect = 0.0
 Identities = 346/418 (82%), Positives = 380/418 (90%), Gaps = 1/418 (0%)

Query: 2   DNWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRA 61
            +WKL  HP++ +   + ++VLDGWGE  PD++N IHVA TPTMDS K  AP RWRL++A
Sbjct: 7   TDWKLAPHPKIPKGKPLLLIVLDGWGENAPDEFNAIHVAPTPTMDSLKAGAPERWRLVKA 66

Query: 62  HGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET 121
           HG+AVGLP++DDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKI++ EGF YIK +F T
Sbjct: 67  HGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIFEGEGFKYIKEAFAT 126

Query: 122 GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIE 181
           GTLHLIGLLSDGGVHSRLDQLQLLLKGA+ERGAKRIR+H+LTDGRDV DGSSVGFVET+E
Sbjct: 127 GTLHLIGLLSDGGVHSRLDQLQLLLKGAAERGAKRIRVHVLTDGRDVPDGSSVGFVETLE 186

Query: 182 KDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVK 241
           KDLAELR KG DA+IASGGGRMYVTMDRYENDW+VVKRGWDA VLGEAPHKFKSA+EAVK
Sbjct: 187 KDLAELREKGCDARIASGGGRMYVTMDRYENDWNVVKRGWDAHVLGEAPHKFKSALEAVK 246

Query: 242 KLREQPNA-NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDK 300
           KLRE+P   NDQYLPPFVIVDE+GK VGPI DGDAVVTFNFRADRMVM+AKALEYEDFDK
Sbjct: 247 KLREEPPPANDQYLPPFVIVDEDGKPVGPIEDGDAVVTFNFRADRMVMIAKALEYEDFDK 306

Query: 301 FDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGH 360
           FDRVR PKIRYAGMLQYDGELKLPSHYLVSPP I+RTSGEYLV NGVRTFACSETVKFGH
Sbjct: 307 FDRVRVPKIRYAGMLQYDGELKLPSHYLVSPPLIERTSGEYLVANGVRTFACSETVKFGH 366

Query: 361 VTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQV 418
           VTFFWNGNRSGYF+  LEEYVEIPSD+GI FNVQPKMKALEIAE+A+ A+LS +F QV
Sbjct: 367 VTFFWNGNRSGYFNEKLEEYVEIPSDNGIPFNVQPKMKALEIAEKARDALLSGKFDQV 424

Length = 558
>gnl|CDD|235463 PRK05434, PRK05434, phosphoglyceromutase; Provisional Back     alignment and domain information
>gnl|CDD|219015 pfam06415, iPGM_N, BPG-independent PGAM N-terminus (iPGM_N) Back     alignment and domain information
>gnl|CDD|216643 pfam01676, Metalloenzyme, Metalloenzyme superfamily Back     alignment and domain information
>gnl|CDD|223768 COG0696, GpmI, Phosphoglyceromutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|130374 TIGR01307, pgm_bpd_ind, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 421
PLN02538 558 2,3-bisphosphoglycerate-independent phosphoglycera 100.0
TIGR01307 501 pgm_bpd_ind 2,3-bisphosphoglycerate-independent ph 100.0
COG0696 509 GpmI Phosphoglyceromutase [Carbohydrate transport 100.0
PRK05434 507 phosphoglyceromutase; Provisional 100.0
KOG4513 531 consensus Phosphoglycerate mutase [Carbohydrate tr 100.0
PF06415223 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); 100.0
PF01676 252 Metalloenzyme: Metalloenzyme superfamily; InterPro 99.87
PRK04135395 cofactor-independent phosphoglycerate mutase; Prov 97.62
COG3635408 Predicted phosphoglycerate mutase, AP superfamily 97.28
PRK04024412 cofactor-independent phosphoglycerate mutase; Prov 97.14
TIGR02535396 hyp_Hser_kinase proposed homoserine kinase. The pr 97.1
PRK04200395 cofactor-independent phosphoglycerate mutase; Prov 96.97
TIGR00306396 apgM 2,3-bisphosphoglycerate-independent phosphogl 96.93
COG2861250 Uncharacterized protein conserved in bacteria [Fun 84.8
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 84.6
PF01261213 AP_endonuc_2: Xylose isomerase-like TIM barrel; In 84.11
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Back     alignment and domain information 
Probab=100.00  E-value=9.9e-165  Score=1285.86  Aligned_cols=416  Identities=83%  Similarity=1.331  Sum_probs=392.6

Q ss_pred             CccccCCCCCCCCcEEEEEEcccCCCCCCCCCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCC-CCCCcccccc
Q 014659            4 WKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTED-DMGNSEVGHN   82 (421)
Q Consensus         4 ~~~~~~~~~~~~~pvvLiIlDGwG~~~~~~gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~G-qMGNSEVGHl   82 (421)
                      |.++.++.+++++|||||||||||++++.++|||++|+||+||+|+++||+.+++|+|||++|||| +| ||||||||||
T Consensus         9 ~~~~~~~~~~~~~pv~LiILDGwG~~~~~~~NAi~~A~tP~~D~l~~~~p~~~~~l~AsG~~VGLP-~~~qmGNSEVGHl   87 (558)
T PLN02538          9 WKLAPHPKIPKGKPLLLIVLDGWGENAPDEFNAIHVAPTPTMDSLKAGAPERWRLVKAHGTAVGLP-SDDDMGNSEVGHN   87 (558)
T ss_pred             ccccCCCCCCCCCCEEEEEecCCCCCCCCCCCHhhhcCCCCHHHHHHhCCCCCceEEECCCcCCCC-CCCCCcchHHhhh
Confidence            788999988888899999999999999999999999999999999999994227999999999999 65 5999999999


Q ss_pred             cCCccceeccchHHHHHHHhcCCCccchhHhhhhhhcCCCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEE
Q 014659           83 ALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHIL  162 (421)
Q Consensus        83 niGAGRvv~Q~l~rI~~aI~~g~~~~n~~l~~~~~~~~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f  162 (421)
                      ||||||||+|+++|||+||++|+|++||+|+++++.+++++|||||||||||||||++||++|+++|+++|+++||||+|
T Consensus        88 niGaGRiv~Q~l~rI~~ai~~g~~~~n~~l~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f  167 (558)
T PLN02538         88 ALGAGRIFAQGAKLVDLALASGKIFEGEGFKYIKEAFATGTLHLIGLLSDGGVHSRLDQLQLLLKGAAERGAKRIRVHVL  167 (558)
T ss_pred             hhccceeecchhHHHHHHHhcCCcccCHHHHHHHHHhcCCeeEEEEeccCCCcccHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            99999999999999999999999999999999999886679999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHHHHHH
Q 014659          163 TDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKK  242 (421)
Q Consensus       163 ~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~ai~~  242 (421)
                      +|||||+|+||++||++|++.|++++++|+.|+||||+||||.||||||+|||||++||++||.|+|+..++|+.+||++
T Consensus       168 ~DGRDt~p~S~~~yl~~l~~~l~~~~~~g~~g~iAsv~GR~yyaMDR~d~rW~rv~~ay~alv~g~~~~~~~~~~~ai~~  247 (558)
T PLN02538        168 TDGRDVPDGSSVGFVETLEKDLAELREKGCDARIASGGGRMYVTMDRYENDWNVVKRGWDAHVLGEAPHKFKSALEAVKK  247 (558)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHhhcCCCcEEEEEEeCCceeecccccccHHHHHHHHHHHhcCCCccccCCHHHHHHH
Confidence            99999999999999999999999875556524999999994339999999999999999999999995478999999999


Q ss_pred             HHhCCC-CCCCCCCCEEEecCCCCccccccCCCEEEEeecCcchHHHHHHHhccCCCCCCccCCCCceeEEEeeeecCCC
Q 014659          243 LREQPN-ANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGEL  321 (421)
Q Consensus       243 ~Y~~~~-~tDEFi~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DRarqlt~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~~  321 (421)
                      +|++|. +|||||+|++|.+.+|+|.++|+|||+|||||||+|||||||+||++++|++|+|...|++.|+|||+|++++
T Consensus       248 ~y~~g~~~tDEfi~P~vi~~~~g~~~~~i~dgD~ViffNFR~DRarqit~a~~~~~f~~f~r~~~p~~~~~~mt~Yd~~~  327 (558)
T PLN02538        248 LREEPPPANDQYLPPFVIVDEDGKPVGPIEDGDAVVTFNFRADRMVMIAKALEYEDFDKFDRVRVPKIRYAGMLQYDGEL  327 (558)
T ss_pred             HHhCCCCCCCCcCCCeEEecCCCCCcccccCCCEEEEecCCChHHHHHHHHhcccCCcccCcCCCCCcEEEeCeEecccC
Confidence            999963 5999999999987567888899999999999999999999999999999999999888888999999999999


Q ss_pred             CCccccccCCCCCCcCHHHHHHhCCCcEEEEecccccceEEEeecCCccccCCCCCceEEEccCCCccCccCCCCCcHHH
Q 014659          322 KLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALE  401 (421)
Q Consensus       322 ~~~v~fl~~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~~gE~R~lvpSpkVaTYDl~PeMsA~e  401 (421)
                      ++|++|||||+.++||||||||++||+||||||||||||||||||||+|+||.+++|+|++||||+|+|||+||||||+|
T Consensus       328 ~~p~~~~f~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~e~e~~i~ipsp~v~tyd~~PeMSA~e  407 (558)
T PLN02538        328 KLPSHYLVSPPLIERTSGEYLVANGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDNGIPFNVQPKMKALE  407 (558)
T ss_pred             CCcceEeeCCCcCCCCHHHHHHhCCCceEEeecccccceeEEeecCCccccCCCCCceEEECCCCCCCCcccCCCCCHHH
Confidence            99977777999999999999999999999999999999999999999999994448999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCcEEEe
Q 014659          402 IAERAKKAILSRRFHQVID  420 (421)
Q Consensus       402 vtd~~i~ai~~~~ydfIi~  420 (421)
                      |||+++++|++++||||++
T Consensus       408 Vtd~~i~~i~~~~ydfi~v  426 (558)
T PLN02538        408 IAEKARDALLSGKFDQVRV  426 (558)
T ss_pred             HHHHHHHHHhcCCCCEEEE
Confidence            9999999999999999987

>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Back     alignment and domain information
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05434 phosphoglyceromutase; Provisional Back     alignment and domain information
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5 Back     alignment and domain information
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases Back     alignment and domain information
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional Back     alignment and domain information
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional Back     alignment and domain information
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase Back     alignment and domain information
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional Back     alignment and domain information
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form Back     alignment and domain information
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
3nvl_A 571 Crystal Structure Of Phosphoglycerate Mutase From T 1e-128
3igy_B 561 Crystal Structures Of Leishmania Mexicana Phosphogl 1e-127
1ejj_A 511 Crystal Structural Analysis Of Phosphoglycerate Mut 2e-56
1o99_A 511 Crystal Structure Of The S62a Mutant Of Phosphoglyc 4e-56
2ify_A 508 Structure Of Bacillus Anthracis Cofactor-Independen 1e-53
>pdb|3NVL|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Trypanosoma Brucei Length = 571 Back     alignment and structure 
Iteration: 1

 Score =  456 bits (1172), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/416 (56%), Positives = 299/416 (71%), Gaps = 7/416 (1%)
Query: 6   LKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSA 65
           L  H  L R  +V +VVLDG G    D+Y+ +HVA TP MD+     P  +R + AHG+A
Sbjct: 25  LAAHKTLPRRKLV-LVVLDGVGIGPRDEYDAVHVAKTPLMDALFND-PKHFRSICAHGTA 82
Query: 66  VGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--T 123
           VGLPT+ DMGNSEVGHNALGAGR+  QGA LVD AL SG+I+  EG+ Y+  +F     T
Sbjct: 83  VGLPTDADMGNSEVGHNALGAGRVVLQGASLVDDALESGEIFTSEGYRYLHGAFSQPGRT 142
Query: 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKD 183
           LHLIGLLSDGGVHSR +Q+  +LK A   GAKRIR+H L DGRDV D +S  F + +E+ 
Sbjct: 143 LHLIGLLSDGGVHSRDNQVYQILKHAGANGAKRIRVHALYDGRDVPDKTSFKFTDELEEV 202
Query: 184 LAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKL 243
           LA+LR  G DA+IASGGGRM+VTMDRYE DW +V+RGW AQVLGE    FKSA EA+ K 
Sbjct: 203 LAKLREGGCDARIASGGGRMFVTMDRYEADWSIVERGWRAQVLGEG-RAFKSAREALTKF 261
Query: 244 REQ-PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFD 302
           RE+  N +DQY PPFVI  ++G+ +G I DGDAV+ FNFR DR++ +++A E E+FDKF+
Sbjct: 262 REEDANISDQYYPPFVIAGDDGRPIGTIEDGDAVLCFNFRGDRVIEMSRAFEEEEFDKFN 321
Query: 303 RVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVT 362
           RVR PK+RYAGM++YDG+L +P+++LV PP++ RTS EYL+ +G   FA SET KFGHVT
Sbjct: 322 RVRLPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRTSEEYLIGSGCNIFALSETQKFGHVT 381
Query: 363 FFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQV 418
           +FWNGNRSG      E + EIPSD  + FN +P MK+ EI + A  AI S ++  +
Sbjct: 382 YFWNGNRSGKLSEERETFCEIPSDR-VQFNQKPLMKSKEITDAAVDAIKSGKYDMI 436
>pdb|3IGY|B Chain B, Crystal Structures Of Leishmania Mexicana Phosphoglycerate Mutase At High Cobalt Concentrations Length = 561 Back     alignment and structure
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase Cocrystallized With 3-Phosphoglycerate Length = 511 Back     alignment and structure
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate Mutase From Bacillus Stearothermophilus Complexed With 2-Phosphoglycerate Length = 511 Back     alignment and structure
>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent Phosphoglucerate Mutase Length = 508 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
3igz_B 561 Cofactor-independent phosphoglycerate mutase; glyc 0.0
1o98_A 511 2,3-bisphosphoglycerate-independent phosphoglycera 1e-140
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A Length = 561 Back     alignment and structure
 Score =  572 bits (1477), Expect = 0.0
 Identities = 231/422 (54%), Positives = 300/422 (71%), Gaps = 7/422 (1%)

Query: 1   MDNWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLR 60
           M    LK H  L R   V +VV+DG G    D Y+ +H+A TP MD+ ++     +R +R
Sbjct: 1   MSALLLKPHKDLPRRT-VLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNR-HFRCVR 58

Query: 61  AHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE 120
           AHG+AVGLPT+ DMGNSEVGHNALGAGR+  QGA LVD A+ SG+IY  EG+ Y+  +F 
Sbjct: 59  AHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFS 118

Query: 121 T--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 178
               TLHLIGLLSDGGVHSR +Q+  +++ A + GAKRIR+H L DGRDV DGSS  F +
Sbjct: 119 KEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTD 178

Query: 179 TIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVE 238
            +E  LA++R  G DA IASGGGRM+VTMDRY+ DW +V+RGW AQVLG+A H F SA E
Sbjct: 179 ELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARH-FHSAKE 237

Query: 239 AVKKLREQ-PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED 297
           A+   RE+ P   DQY PPF++VDE  K +G I DGDAV+  NFR DR++ + +A E ED
Sbjct: 238 AITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDED 297

Query: 298 FDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVK 357
           F+KFDRVR PK+RYAGM++YDG+L +P+++LV PP++ R S EYL  +G+  FACSET K
Sbjct: 298 FNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQK 357

Query: 358 FGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQ 417
           FGHVT+FWNGNRSG  D   E + E+PSD  + FN +P+M++  I E A +A+ S  ++ 
Sbjct: 358 FGHVTYFWNGNRSGKIDEKHETFKEVPSDR-VQFNEKPRMQSAAITEAAIEALKSGMYNV 416

Query: 418 VI 419
           V 
Sbjct: 417 VR 418
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
3igz_B 561 Cofactor-independent phosphoglycerate mutase; glyc 100.0
1o98_A 511 2,3-bisphosphoglycerate-independent phosphoglycera 100.0
2zkt_A 412 2,3-bisphosphoglycerate-independent phosphoglycer 98.67
3kd8_A 399 2,3-bisphosphoglycerate-independent phosphoglycera 98.44
3kd8_A399 2,3-bisphosphoglycerate-independent phosphoglycera 96.87
2zkt_A412 2,3-bisphosphoglycerate-independent phosphoglycer 96.49
3m7v_A413 Phosphopentomutase; structural genomics, nysgrc, c 89.75
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A Back     alignment and structure
Probab=100.00  E-value=5.6e-165  Score=1291.65  Aligned_cols=412  Identities=55%  Similarity=0.936  Sum_probs=387.8

Q ss_pred             CCCCccccCCCCCCCCcEEEEEEcccCCCCCCCCCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccc
Q 014659            1 MDNWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVG   80 (421)
Q Consensus         1 ~~~~~~~~~~~~~~~~pvvLiIlDGwG~~~~~~gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVG   80 (421)
                      |.-|+|++||+.+++ |||||||||||+++++++|||++|+|||||+|++ ||++|++|+|||++|||||+|||||||||
T Consensus         1 ~~~~~l~~~~~~~~~-~~~L~IlDGwG~~~~~~~NAi~~A~tP~~d~l~~-~~~p~~~l~asG~~VGLP~~gqMGNSEVG   78 (561)
T 3igz_B            1 MSALLLKPHKDLPRR-TVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRR-DNRHFRCVRAHGTAVGLPTDADMGNSEVG   78 (561)
T ss_dssp             ---CCCCBCSSCCCC-CEEEEEETTCCCCCCSTTCHHHHSCCHHHHHHTT-CTTTEEEEBCSGGGGTCSSTTSCCCHHHH
T ss_pred             CCceecccCCCCCCC-CEEEEEecCCCCCCCCCCChhhcCCCccHHHHhc-cCCCceEEEecCccCCCCCCCCccccHHh
Confidence            677999999998765 4999999999999999999999999999999999 94444999999999999999999999999


Q ss_pred             cccCCccceeccchHHHHHHHhcCCCccchhHhhhhhhc-CC-CceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEE
Q 014659           81 HNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIR  158 (421)
Q Consensus        81 HlniGAGRvv~Q~l~rI~~aI~~g~~~~n~~l~~~~~~~-~~-~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~  158 (421)
                      ||||||||||||+|+|||+||++|+|++||+|+++++++ ++ ++|||||||||||||||+|||++|+++|+++|+++||
T Consensus        79 H~niGaGRiv~Q~l~rI~~ai~~g~~~~n~~l~~~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~~l~~~a~~~g~~~v~  158 (561)
T 3igz_B           79 HNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIR  158 (561)
T ss_dssp             HHHHHHSSCCCCHHHHHHHHHHHSGGGTSHHHHHHHHHHTSTTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             hhcccCCeeeccchHHHHHHHhcCCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCccchHHHHHHHHHHHHHcCCCeEE
Confidence            999999999999999999999999999999999999999 54 6999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHH
Q 014659          159 LHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVE  238 (421)
Q Consensus       159 vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~  238 (421)
                      ||+|+|||||+|+||++||++||+.++.+.+.|+||+||||+|||||||||||+|||||++||++||.|+|+ .+++|.+
T Consensus       159 vH~f~DGRD~~p~S~~~~~~~l~~~~~~~~~~g~~g~iasv~GRyyvaMDRyd~rW~rv~~ay~a~v~g~g~-~~~~~~~  237 (561)
T 3igz_B          159 VHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDAR-HFHSAKE  237 (561)
T ss_dssp             EEEEECSSSSCTTTHHHHHHHHHHHHHHHHTTTCEEEEEEEEETTTSSCCCTTSCHHHHHHHHHHHTTCCSE-EESCHHH
T ss_pred             EEEEccCCCCCcchHHHHHHHHHHHHHHHHhcCCCceEEEEeccchhhcCccCCCHHHHHHHHHHHhcCCCC-CcCCHHH
Confidence            999999999999999999999997744444448834999999999999999999999999999999999995 5788877


Q ss_pred             HHH---HHHhCCCCCCCCCCCEEEecCCCCccccccCCCEEEEeecCcchHHHHHHHhccCCCCCCccCCCCceeEEEee
Q 014659          239 AVK---KLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGML  315 (421)
Q Consensus       239 ai~---~~Y~~~~~tDEFi~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DRarqlt~al~~~~f~~f~r~~~~~l~~~~mt  315 (421)
                      ||+   ++|++  +|||||+|++|.+.+|+|+++|+|||+|||||||+|||||||+||++++|++|+|...|++.|+|||
T Consensus       238 a~~~~~~~y~~--~tDefi~P~vi~~~~~~p~~~i~dgD~viffNfR~DRarqit~a~~~~~f~~f~r~~~p~l~~~~mt  315 (561)
T 3igz_B          238 AITTFREEDPK--VTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMM  315 (561)
T ss_dssp             HHHHHHHHCTT--CCTTTCCCEEEBCTTSCBSCCCCTTCEEEECCCCCTTTHHHHHHHHCSSCCSSCCSCCCCCEEEEEE
T ss_pred             HHHHHHHHhcc--cCCCccCCEEEecCCCCccccccCCCEEEEecCCCchHHHHHHHhcCcCcccccccCCCceEEEEeE
Confidence            666   55654  7999999999988778888899999999999999999999999999999999999998999999999


Q ss_pred             eecCCCCCccccccCCCCCCcCHHHHHHhCCCcEEEEecccccceEEEeecCCccccCCCCCceE--EEccCCCccCccC
Q 014659          316 QYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEY--VEIPSDSGITFNV  393 (421)
Q Consensus       316 ~Yd~~~~~~v~fl~~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~~gE~R--~lvpSpkVaTYDl  393 (421)
                      +|++++++|++||+||++++||||||||++|++||||||||||||||||||||+|++|  +||+|  +|||||| +|||+
T Consensus       316 ~Yd~~~~~~v~flv~p~~~~ntlge~l~~~g~~QlriAETeKyaHVTfFfnGG~e~~f--~ge~r~y~lipSpk-atyd~  392 (561)
T 3igz_B          316 RYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKI--DEKHETFKEVPSDR-VQFNE  392 (561)
T ss_dssp             CSBTTTTBSSSEEECCCCCCSCHHHHHHHTTCCEEEEEEHHHHTCCCCCTTTSCCSCS--CTTTEEEEEECCCS-SCGGG
T ss_pred             eccccCCCceeecCCCccccccHHHHHHhCCCcchHHhccCCCCceEEeeCCcccccC--CCcceeeeEeCCCC-CCccC
Confidence            9999999999999999999999999999999999999999999999999999999999  99999  9999999 99999


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCcEEEe
Q 014659          394 QPKMKALEIAERAKKAILSRRFHQVID  420 (421)
Q Consensus       394 ~PeMsA~evtd~~i~ai~~~~ydfIi~  420 (421)
                      +|||||.+|||+++++|++++||||++
T Consensus       393 ~Pemsa~ev~d~~i~al~~~~~DfI~v  419 (561)
T 3igz_B          393 KPRMQSAAITEAAIEALKSGMYNVVRI  419 (561)
T ss_dssp             STTTTHHHHHHHHHHHHHHSCCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            999999999999999999999999987
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A Back     alignment and structure
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase; phosphonopyruvate decarboxylase, isomerase, structural genom NPPSFA; 2.40A {Pyrococcus horikoshii} Back     alignment and structure
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; structural genomics, PSI-2, protein genomics, MCSG, glycolysis isomerase; 2.60A {Thermoplasma acidophilum} PDB: 3idd_A Back     alignment and structure
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; structural genomics, PSI-2, protein genomics, MCSG, glycolysis isomerase; 2.60A {Thermoplasma acidophilum} PDB: 3idd_A Back     alignment and structure
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase; phosphonopyruvate decarboxylase, isomerase, structural genom NPPSFA; 2.40A {Pyrococcus horikoshii} Back     alignment and structure
>3m7v_A Phosphopentomutase; structural genomics, nysgrc, cytoplasm, isomerase, manganese binding, PSI-2, protein structure initiative; 2.00A {Streptococcus mutans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 421
d1o98a1234 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-indep 5e-57
d1o98a2275 c.76.1.3 (A:2-76,A:311-510) 2,3-Bisphosphoglycerat 2e-08
>d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 234 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
superfamily: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
family: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
domain: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  185 bits (470), Expect = 5e-57
 Identities = 77/247 (31%), Positives = 133/247 (53%), Gaps = 19/247 (7%)

Query: 92  QGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLK 147
           Q    +++A+  G+  ++E F    N++K      +LHL GLLSDGGVHS +  L  LL+
Sbjct: 1   QSLTRINIAIREGEFDRNETFLAAMNHVKQH--GTSLHLFGLLSDGGVHSHIHHLYALLR 58

Query: 148 GASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTM 207
            A++ G KR+ +H   DGRDV   ++  +++ +++ + E        +IA+  GR Y +M
Sbjct: 59  LAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYG----VGEIATLSGRYY-SM 113

Query: 208 DRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAV 267
           DR    WD V++ + A V GE P  ++  +E ++   +     D+++ P VIV E+G+ V
Sbjct: 114 DRD-KRWDRVEKAYRAMVYGEGPT-YRDPLECIEDSYKH-GIYDEFVLPSVIVREDGRPV 170

Query: 268 GPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPK-IRYAGMLQYDGELKLPS 325
             I D DA++ +NFR DR + ++     EDF +FDR  + PK + +  +  +   +    
Sbjct: 171 ATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYV 230

Query: 326 HYLVSPP 332
            +    P
Sbjct: 231 AF---KP 234
>d1o98a2 c.76.1.3 (A:2-76,A:311-510) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 275 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
d1o98a1234 2,3-Bisphosphoglycerate-independent phosphoglycera 100.0
d1o98a2275 2,3-Bisphosphoglycerate-independent phosphoglycera 99.59
d1o98a2 275 2,3-Bisphosphoglycerate-independent phosphoglycera 92.39
d1ei6a_406 Phosphonoacetate hydrolase {Pseudomonas fluorescen 92.3
d1su1a_184 Phosphodiesterase yfcE {Escherichia coli [TaxId: 5 88.97
d1s3la_165 Putative phosphodiesterase MJ0936 {Methanococcus j 83.37
>d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
superfamily: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
family: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
domain: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.5e-90  Score=660.73  Aligned_cols=230  Identities=33%  Similarity=0.628  Sum_probs=219.6

Q ss_pred             cchHHHHHHHhcCCCccchhHhhhhhhc-C-CCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCC
Q 014659           92 QGAKLVDLALASGKIYQDEGFNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL  169 (421)
Q Consensus        92 Q~l~rI~~aI~~g~~~~n~~l~~~~~~~-~-~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~  169 (421)
                      |+|+|||+||++|+|++||+|+++++.+ + +++|||||||||||||||+|||++|+++|+++|+++|+||+|||||||+
T Consensus         1 Q~l~rIn~ai~~g~~~~n~~l~~~~~~~k~~~~~lHl~GL~SdGGVHSh~~Hl~al~~~a~~~gv~~V~iH~~~DGRDt~   80 (234)
T d1o98a1           1 QSLTRINIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVG   80 (234)
T ss_dssp             CHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCCEEEEEEECSSSSC
T ss_pred             CccHHHHHHHHCCCcccCHHHHHHHHHHHhcCCeEEEEEeecCCccccchHHHHHHHHHHHHcCCCceEEEEEecCCCCC
Confidence            8999999999999999999999999999 4 4699999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCC
Q 014659          170 DGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNA  249 (421)
Q Consensus       170 P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~ai~~~Y~~~~~  249 (421)
                      |+||++||++|++.|+++   +.| +||||+|||| |||| |+|||||++||++|+.|+|+ .++|+.+||+++|++ ++
T Consensus        81 p~s~~~~l~~l~~~~~~~---~~~-~IASv~GRyy-aMDR-D~rWeR~~~ay~~l~~g~~~-~~~~~~~aI~~~Y~~-g~  152 (234)
T d1o98a1          81 PQTAPQYIKELQEKIKEY---GVG-EIATLSGRYY-SMDR-DKRWDRVEKAYRAMVYGEGP-TYRDPLECIEDSYKH-GI  152 (234)
T ss_dssp             TTCHHHHHHHHHHHHHHH---TCC-EEEEEEEHHH-HTCC-SCCHHHHHHHHHHHHHCCSC-EESSHHHHHHHHHHT-TC
T ss_pred             chhHHHHHHHHHHHhhhc---cce-eEEEeeccce-eccc-cccHHHHHHHHHHhhcCCCC-CcCCHHHHHHHhhcc-CC
Confidence            999999999999999998   775 9999999999 9999 99999999999999999995 789999999999999 56


Q ss_pred             CCCCCCCEEEecCCCCccccccCCCEEEEeecCcchHHHHHHHhccCCCCCCccC-CC-CceeEEEeeeecCCCCCcccc
Q 014659          250 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRV-RF-PKIRYAGMLQYDGELKLPSHY  327 (421)
Q Consensus       250 tDEFi~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DRarqlt~al~~~~f~~f~r~-~~-~~l~~~~mt~Yd~~~~~~v~f  327 (421)
                      |||||+|++|.+++|.|.+.|+|||+|||||||+||||||++||++|+|++|+|. +. +++.|+|||+|+++++.||+|
T Consensus       153 tDEFi~P~~i~~~~g~p~~~I~dgD~vif~NFR~DRaRQit~al~~~~F~~F~r~~~~~~~~~~~tMt~Yd~~l~~~v~F  232 (234)
T d1o98a1         153 YDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVAF  232 (234)
T ss_dssp             CGGGCCCEEEBCTTSSBSCCCCTTCEEEECCCCSTTTHHHHHHHHCSSCCSSCCCTTCCCSCEEEESSCCCTTSCSEESS
T ss_pred             CccccceeEEecCCCCCcccccCCCEEEEEeccchHHHHHHHHhhCCCcccccccCCCCCcceEEECcccCCCCCCceec
Confidence            9999999999988888999999999999999999999999999999999999984 33 468999999999999999988


Q ss_pred             ccCC
Q 014659          328 LVSP  331 (421)
Q Consensus       328 l~~p  331 (421)
                        ||
T Consensus       233 --pP  234 (234)
T d1o98a1         233 --KP  234 (234)
T ss_dssp             --CC
T ss_pred             --CC
Confidence              87
>d1o98a2 c.76.1.3 (A:2-76,A:311-510) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1o98a2 c.76.1.3 (A:2-76,A:311-510) 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure