Citrus Sinensis ID: 014662

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTETRSY
Secondary Structure (PSIPRED)
ccccccccccccEEEEEccccccccHHHHHccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHcccccEEEEEccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccEEEEEcccccEHHHHccHHHcccccHHHHcccEEEccccccccHHHHHHHcccccccccccccHHcccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHcccccccccccccccHHHccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEHHHHHHHHccccccccEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
mgymcdfcgdqrsivycrsdaaclclscdRNVHLANALSKRHSRTLLcercnsqpalVRCAEERVSLCqncdwighgtstsasshkrqtincysgcpsaselSSIWSFvldfpsggesacEQELGLmsitdnsiknswgpnedsisqnaagggveandvcdadksnvrvgatsvpginsttqnrdqihgsannpplpklccsatkdlafcedddlyedfnmdemdlnFENYEELFGVTLNHSeellenggieslfgtkdmsaadsnCQGAVAAegssaglvnamqpacsnaasadsimstktepilcftakqghsslsfsgltgdsnagdyqecdassmllmgeppwcppcpetsftsasRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGrfvkageaydydpltqtetrsy
Flexible Loop (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGtstsasshkrqTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVgatsvpginsttqnrDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPetsftsasrskavlrykekkktrkfdkrvryasrkaradvrrrvkgrfvkageaydydpltqtetrsy
Low Complexity Region (SEG)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLrykekkktrkfdkrvrYASrkaradvrrrvkgrFVKAGEAYDYDPLTQTETRSY
Disordered region (IsUnstruct)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGT*********QTINCYSGCPSASELSSIWSFVLDFPSGG***C***LGL***********************************************************************KLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLF************************************************PILCFTA************************************W**************************************************GRFVKA*****************
Disordered Region (DISOPRED)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTST**SSHKRQTINCYSGCPSASELSS*WSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPK********LAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDM*************************************************************************CD********************************YKEKK***KFDKRVRYASRKARADVRRRVKGRFVK******************
Disordered Region (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHG***********TINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTETRSY
Disordered Region (DISPRO)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFP**GESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATS*******************NPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKD***********************************************************************YQECDASS**LM********************KAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPL********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTETRSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q9SSE5	372	Zinc finger protein CONST	yes	no	0.854	0.965	0.572	1e-127
Q9LUA9	373	Zinc finger protein CONST	no	no	0.866	0.975	0.557	1e-118
Q9LJ44	364	Zinc finger protein CONST	no	no	0.845	0.975	0.353	2e-55
O23379	330	Putative zinc finger prot	no	no	0.259	0.330	0.504	5e-28
O22800	402	Zinc finger protein CONST	no	no	0.252	0.263	0.443	1e-26
Q9C7E8	433	Zinc finger protein CONST	no	no	0.3	0.290	0.414	1e-26
Q9C9F4	356	Putative zinc finger prot	no	no	0.259	0.306	0.455	3e-24
O82256	332	Zinc finger protein CONST	no	no	0.238	0.301	0.470	1e-22
Q940T9	362	Zinc finger protein CONST	no	no	0.214	0.248	0.422	4e-15
Q9SK53	294	Zinc finger protein CONST	no	no	0.252	0.360	0.383	3e-13

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/433 (57%), Positives = 294/433 (67%), Gaps = 74/433 (17%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query: 61  AEERVSLCQNCDWIGH---------GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
            EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct: 61  VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query: 112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
               G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct: 121 L--AGQSICEQELGMMNIDDD------GPTD--------------KKTCNEDKKDVLVGS 158

Query: 172 TSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENY 231
           +S+P  +S  Q +                 S+ KD+  CE DD Y +  MDE+D+  ENY
Sbjct: 159 SSIPETSSVPQGKS----------------SSAKDVGMCE-DDFYGNLGMDEVDMALENY 201

Query: 232 EELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNA 291
           EELFG   N SEEL  +GGI+SLF            +   A EG      N++QPA SN 
Sbjct: 202 EELFGTAFNPSEELFGHGGIDSLFH-----------KHQTAPEGG-----NSVQPAGSN- 244

Query: 292 ASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSML-LMGEPPWCPP 350
              DS MS+KTEPI+CF +K  HS++SFSG+TG+S+AGD+QEC ASS + L GEPPW PP
Sbjct: 245 ---DSFMSSKTEPIICFASKPAHSNISFSGVTGESSAGDFQECGASSSIQLSGEPPWYPP 301

Query: 351 CPETSFT---SASRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAY 407
             + +     S +R+ AV+RYKEKKK RKFDKRVRYASRKARADVRRRVKGRFVKAGEAY
Sbjct: 302 TLQDNNACSHSVTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAY 361

Query: 408 DYDPLTQTETRSY 420
           DYDPL  T TRSY
Sbjct: 362 DYDPL--TPTRSY 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/429 (55%), Positives = 282/429 (65%), Gaps = 65/429 (15%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query: 61  AEERVSLCQNCDWIGH--GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
           ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct: 61  SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query: 117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPG 176
           ESACEQ +GLM+I ++                  G G         +KS V+      P 
Sbjct: 121 ESACEQGMGLMTIDED------------------GTG---------EKSGVQKINVEQPE 153

Query: 177 INSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFG 236
            +S  Q  D      N+        S  K+L  CEDD    +   DE+DL  ENYEELFG
Sbjct: 154 TSSAAQGMDHSSVPENS--------SMAKELGVCEDD-FNGNLISDEVDLALENYEELFG 204

Query: 237 VTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADS 296
              N S  L E+GGI SLF   +            A EGS        QPA SN ASADS
Sbjct: 205 SAFNSSRYLFEHGGIGSLFEKDE------------AHEGS------MQQPALSNNASADS 246

Query: 297 IMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSM-LLMGEP-PWCPPCPET 354
            M+ +TEPI+C+++K  HS++SFSG+TG+SNAGD+Q+C ASSM  L  EP PWC P  + 
Sbjct: 247 FMTCRTEPIICYSSKPAHSNISFSGITGESNAGDFQDCGASSMKQLSREPQPWCHPTAQD 306

Query: 355 SFTSA---SRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDP 411
              S+   +R+ AV+RYKEKKK RKFDKRVRY SRK RADVRRRVKGRFVK+GEAYDYDP
Sbjct: 307 IIASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYDP 366

Query: 412 LTQTETRSY 420
           +  + TRSY
Sbjct: 367 M--SPTRSY 373

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/421 (35%), Positives = 215/421 (51%), Gaps = 66/421 (15%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC
Sbjct: 1   MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            +E+VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P       
Sbjct: 61  LDEKVSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVS----- 113

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
               GL+S                       G    ND+   + +      + VP   S 
Sbjct: 114 ----GLLS--------------------PFVGSFPLNDL---NNTMFDTAYSMVPHNISY 146

Query: 181 TQN-RDQI-HGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVT 238
           TQN  D +   S  +   P +     +      ++DL E  N+D+  LNF+  +++ G +
Sbjct: 147 TQNFSDNLSFFSTESKGYPDMVLKLEEG-----EEDLCEGLNLDDAPLNFDVGDDIIGCS 201

Query: 239 LN-HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSI 297
              H E          +  T   S   SN     A E S  G             + ++ 
Sbjct: 202 SEVHIEPDHTVPNCLLIDKTNTSSFTGSNFTVDKALEASPPG----------QQMNINTG 251

Query: 298 MSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFT 357
           +     P+L     Q H SL+   +TG++NA DYQ+C  S   +M E PW     ET+F 
Sbjct: 252 LQLPLSPVL---FGQIHPSLN---ITGENNAADYQDCGMSPGFIMSEAPW-----ETNFE 300

Query: 358 SA---SRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQ 414
            +   +R++A LRYKEKK  R F K++RYASRKARAD R+RVKGRFVKAG++YDYDP + 
Sbjct: 301 VSCPQARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDSYDYDPSSP 360

Query: 415 T 415
           T
Sbjct: 361 T 361

Arabidopsis thaliana (taxid: 3702)

>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=3 SV=2

 Score =  125 bits (315), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 2/111 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C
Sbjct: 1   MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
             E VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+
Sbjct: 61  MNENVSLCQGCQWT--ASNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE 109

Arabidopsis thaliana (taxid: 3702)

>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 77/106 (72%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct: 12  CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVL 110
           + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   L
Sbjct: 72  LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWGIDL 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 82/128 (64%), Gaps = 2/128 (1%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct: 9   CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
           + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +    Q  
Sbjct: 69  LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDEENQVP 126

Query: 125 GLMSITDN 132
            +  + DN
Sbjct: 127 MMAMMMDN 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct: 10  MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
            + ++ LC  C+   HG  +  S H+R+ + CY+GCP A + + +W F V+D
Sbjct: 70  FDHKMFLCHGCNDKFHGGGS--SEHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct: 12  LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
           R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct: 72  RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 50/90 (55%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
          +CD C    + +YCR DAA LCLSCD  VH AN L+ RH+R  +CE C   PA V C  +
Sbjct: 5  LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKAD 64

Query: 64 RVSLCQNCDWIGHGTSTSASSHKRQTINCY 93
            +LC  CD   H  +  A  H+R  +  +
Sbjct: 65 AAALCVTCDRDIHSANPLARRHERVPVTPF 94

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD C    + ++CR+DAA LC  CD  +H AN L+ RH R  LCE C   PA V C  +
Sbjct: 7   LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTIN-CYSGCPSASELSSIWSFV 109
             +LC  CD   H  +  +  H+R  I   Y     A   SS  +FV
Sbjct: 67  AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV 113

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
359485854	415	PREDICTED: zinc finger protein CONSTANS-	0.988	1.0	0.719	1e-171
356547575	409	PREDICTED: zinc finger protein CONSTANS-	0.971	0.997	0.726	1e-170
356577552	446	PREDICTED: zinc finger protein CONSTANS-	0.971	0.914	0.729	1e-169
255567234	414	transcription factor, putative [Ricinus	0.980	0.995	0.765	1e-169
449444452	415	PREDICTED: zinc finger protein CONSTANS-	0.980	0.992	0.680	1e-162
302398767	409	COL domain class transcription factor [M	0.973	1.0	0.683	1e-156
224068779	379	predicted protein [Populus trichocarpa]	0.9	0.997	0.705	1e-155
224131908	379	predicted protein [Populus trichocarpa]	0.9	0.997	0.726	1e-153
357462477	465	Zinc finger protein CONSTANS-LIKE protei	0.964	0.870	0.698	1e-152
357462481	411	Zinc finger protein CONSTANS-LIKE protei	0.971	0.992	0.697	1e-152

>gi|359485854|ref|XP_002264506.2| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Vitis vinifera] gi|296085061|emb|CBI28476.3| unnamed protein product [Vitis vinifera]

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 302/420 (71%), Positives = 345/420 (82%), Gaps = 5/420 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRSIVYCRSDAA LCLSCDR+VH ANALS+RHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGEQRSIVYCRSDAASLCLSCDRHVHSANALSRRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW GHG ST+ SSHK++TINCYSGCPS+  LS++W FVLD PS G S C
Sbjct: 61  IEEKISLCQNCDWTGHGGSTTTSSHKKETINCYSGCPSSEGLSTMWPFVLDLPSTGNSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQ L LM + + S  NSWGP  +S  Q+A+   VE ND  + DKS++ +G++SVP +NS 
Sbjct: 121 EQGLSLMCLNETSEMNSWGPPGNSSRQDAS-LTVEVNDANNVDKSSILIGSSSVPELNSP 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
           +Q  DQ  GSA +  LPKL C  T DL FCEDD LYEDFNMDE+DLN ENYEELFGV L+
Sbjct: 180 SQKLDQPSGSA-DLTLPKLLCPGTDDLGFCEDDSLYEDFNMDEVDLNLENYEELFGVALS 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSE+L ENGGI+SLFG  D S ADS+CQGAV AEG S GL NA+QP  SNAASADSIMS+
Sbjct: 239 HSEQLFENGGIDSLFGKMDTSGADSHCQGAVIAEG-SVGLANAVQPTYSNAASADSIMSS 297

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT KQ HSSLSFSGLTG+S+AGDYQ+C AS   LMGEPPWCPP PE+S  S S
Sbjct: 298 KTEPILCFTGKQAHSSLSFSGLTGESSAGDYQDCGASPTFLMGEPPWCPPGPESSLPSTS 357

Query: 361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTETRSY 420
           RS AV+RY+EKKK RKFDKRVRYASRKARADVR+RVKGRFVKAGEAYDYDP+  +ETRS+
Sbjct: 358 RSSAVMRYREKKKNRKFDKRVRYASRKARADVRQRVKGRFVKAGEAYDYDPI--SETRSF 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547575|ref|XP_003542186.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 303/417 (72%), Positives = 341/417 (81%), Gaps = 9/417 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVLD  +  ES C
Sbjct: 61  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLDIAAISESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K+   P E    QN +G   E  D    DKS   VG +S+P  +S 
Sbjct: 121 EQELGLMSINEN--KSVGVPPE---GQNVSGSD-EVTDQPALDKS--LVGTSSMPESSSK 172

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ    AN   L KL C ATK  A CE+D+LY+DFNMDE+DLN ENYEELFG+ L+
Sbjct: 173 PRILDQPARPANEC-LSKLYCPATKFPALCENDNLYDDFNMDEVDLNLENYEELFGMALS 231

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSEEL ENGGI+SLFGTKDMSA D +C+ A+AAEGSS G VN MQPACSNAASADSI+ST
Sbjct: 232 HSEELFENGGIDSLFGTKDMSAGDFSCEDAIAAEGSSVGQVNVMQPACSNAASADSILST 291

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT +Q  S+LSFSG+TGDS+AGDYQ+C ASSMLLMGEPPW  PCPE S  SA+
Sbjct: 292 KTEPILCFTGRQAQSNLSFSGVTGDSSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSAN 351

Query: 361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTET 417
           RS AV+RYKEKKKTR FDK+VRYASRKARADVRRRVKGRFVKAG+ YDYDPL+ T +
Sbjct: 352 RSNAVMRYKEKKKTRMFDKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRS 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577552|ref|XP_003556888.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 304/417 (72%), Positives = 342/417 (82%), Gaps = 9/417 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 38  MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 97

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVL+  +  ES C
Sbjct: 98  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLEIAAISESTC 157

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K    P ED   QN +G   E  D+   +KS   VGA+ +P  +S 
Sbjct: 158 EQELGLMSINEN--KCVGVPPED---QNVSGSD-EVTDLPALNKS--LVGASLMPESSSE 209

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
               DQ  G  N   LPKL C ATK  A  EDD+LY+DFNMDE+DL+ ENYEELFG+ L+
Sbjct: 210 PCILDQPAGPTNEC-LPKLYCPATKCPALSEDDNLYDDFNMDEVDLDLENYEELFGMALS 268

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSEEL ENGGI+SLFGTK MSA DSNCQ A+AAEGSS G VNAMQPACSNAASADSI+ST
Sbjct: 269 HSEELFENGGIDSLFGTKGMSAGDSNCQEAIAAEGSSVGQVNAMQPACSNAASADSILST 328

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT +Q  S+LSFSG+TG+S+AGDYQ+C ASSMLLMGEPPW  PCPE S  SA+
Sbjct: 329 KTEPILCFTGRQTQSNLSFSGVTGESSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSAN 388

Query: 361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTET 417
           RS AV+RYKEKKKTR FDK+VRYASRKARADVRRRVKGRFVKAG+ YDYDPL+ T +
Sbjct: 389 RSNAVMRYKEKKKTRMFDKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRS 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567234|ref|XP_002524598.1| transcription factor, putative [Ricinus communis] gi|223536151|gb|EEF37806.1| transcription factor, putative [Ricinus communis]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 320/418 (76%), Positives = 361/418 (86%), Gaps = 6/418 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RHSRTLLCERCNSQPAL+RC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS-GGESA 119
           A+ER+SLCQ CDW+ HG S S+S+HKRQTINCY+GCPSASELSS+WSFVLDFPS  GES 
Sbjct: 61  ADERLSLCQKCDWMVHGNSNSSSTHKRQTINCYTGCPSASELSSLWSFVLDFPSVDGEST 120

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CEQELGLMSI ++S  N+WGP + +ISQN +G     N+ C+  KS+  VG +S P +  
Sbjct: 121 CEQELGLMSIAEDSSTNTWGPPDKTISQNVSGAAA-VNNACEIPKSSGCVGNSSAPQL-- 177

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTL 239
              N D   GSA N PLPKLCC  TK  A CE DDLYEDFNMDE+DLN ENYEELFG+ L
Sbjct: 178 MPNNLDHPAGSA-NAPLPKLCCPGTKGPALCE-DDLYEDFNMDEVDLNLENYEELFGIAL 235

Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMS 299
           N SEEL ENGGI+SLFG KDMSAADSNCQGAVAAEGSSAGLVNA+QPACSNAASADS+MS
Sbjct: 236 NDSEELFENGGIDSLFGMKDMSAADSNCQGAVAAEGSSAGLVNAVQPACSNAASADSMMS 295

Query: 300 TKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSA 359
            KTEPILCFTA+ GHS+LSFSGLTG+S+AGDYQ+C ASSM LMGEPPWCPPCPE+SF+SA
Sbjct: 296 AKTEPILCFTARPGHSNLSFSGLTGESSAGDYQDCGASSMFLMGEPPWCPPCPESSFSSA 355

Query: 360 SRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTET 417
           +R+ AV+RYKEKKK RKF+K+VRYASRKARADVRRRVKGRFVKAG+AYDYDPL QT +
Sbjct: 356 NRNDAVMRYKEKKKIRKFEKKVRYASRKARADVRRRVKGRFVKAGDAYDYDPLNQTRS 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444452|ref|XP_004139988.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus] gi|449475645|ref|XP_004154511.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/419 (68%), Positives = 331/419 (78%), Gaps = 7/419 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MG+MCDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RH+RTLLCERC+ QP+ VRC
Sbjct: 1   MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASS-HKRQTINCYSGCPSASELSSIWSFVLDFPSGGESA 119
            EERVSLCQNCDW GHG+ST ASS HKRQTINCYSGCPSA+ELS IWSFVLD PS  + A
Sbjct: 61  IEERVSLCQNCDWTGHGSSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVND-A 119

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CE+ELGLMSI +  +  +W P+E++  Q   G   EA+DVC  +KSNV VG++S+ G   
Sbjct: 120 CEKELGLMSIAETDLTGAWSPSENNAGQRMPGS-TEASDVCSREKSNVLVGSSSLIGSRP 178

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFC-EDDDLYEDFNMDEMDLNFENYEELFGVT 238
            T ++       +N  LPK CC  TK   FC EDDDLY++F+MDEMDLN ENYE+LF ++
Sbjct: 179 HTSDQPV---ELDNVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEDLFSMS 235

Query: 239 LNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIM 298
           LNHSEE  ENGGI+S F  K +S  DS    AV AEGSS G+V  MQPA SN ASADS+M
Sbjct: 236 LNHSEEFFENGGIDSFFEAKGLSFEDSVSHSAVVAEGSSMGVVQQMQPAYSNGASADSVM 295

Query: 299 STKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTS 358
           STKTEPILCF ++Q  S +SFSGLTG+S+AGD+Q+C ASSMLLMGEPPWC P  E+SF S
Sbjct: 296 STKTEPILCFNSRQAQSGMSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGTESSFPS 355

Query: 359 ASRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTET 417
             R+ AV RYKEKKKTRKF+K VRYA+RKARADVRRRVKGRFVKAGEAYDYDPL Q  +
Sbjct: 356 TDRNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARS 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398767|gb|ADL36678.1| COL domain class transcription factor [Malus x domestica]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 287/420 (68%), Positives = 334/420 (79%), Gaps = 11/420 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCD+C  QRS+V+CRSDAACLCLSCDRNVH ANALS+RH RTL+CERCNSQPALVRC
Sbjct: 1   MGYMCDYCQVQRSMVHCRSDAACLCLSCDRNVHSANALSRRHLRTLICERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EERVSLCQNCDW+GH  STSAS HKRQT+NCYSGCPS++ELSSIWSFV D PS GESAC
Sbjct: 61  TEERVSLCQNCDWMGHQASTSASGHKRQTLNCYSGCPSSAELSSIWSFVSDLPSNGESAC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQE+GLMSI +NS ++ W   E +  Q+A+G   E N     +KS + VG++SVP  +  
Sbjct: 121 EQEMGLMSIAENSTRSEWSQTESNTRQSASGAD-EVNPAHSMEKSGILVGSSSVPERSHA 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
                Q+ GS  N  LPKL     K     EDDDLY+D +MDEM+LN ENY+ELFGV+LN
Sbjct: 180 RHVVGQLSGSV-NASLPKLYSHGGKGTGLPEDDDLYDDLDMDEMELNLENYDELFGVSLN 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSEEL +NGGI+SLFG K++S    +CQ AVAAEGSS GL NA QPACSNAASADS+MST
Sbjct: 239 HSEELFKNGGIDSLFGAKNVS---RDCQDAVAAEGSSFGLGNAPQPACSNAASADSVMST 295

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KT+P++CF AKQ HS+LSFSG+TG+S+AGD Q+C ASS       PW PPCPE+S  SA+
Sbjct: 296 KTDPVICFPAKQAHSNLSFSGITGESSAGDCQDCGASST------PWYPPCPESSMQSAN 349

Query: 361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTETRSY 420
           RS AV+RYKEKKK RKF+KRVRYASRKARADVR+RVKGRF+KAGEAYDYDPL Q  TRSY
Sbjct: 350 RSNAVMRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFIKAGEAYDYDPLNQARTRSY 409

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068779|ref|XP_002302823.1| predicted protein [Populus trichocarpa] gi|222844549|gb|EEE82096.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/417 (70%), Positives = 328/417 (78%), Gaps = 39/417 (9%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAACLCLSCD+ VH ANALSKRHSRTLLCERCNSQPALVR 
Sbjct: 1   MGYICDFCGEQRSMVYCRSDAACLCLSCDQIVHSANALSKRHSRTLLCERCNSQPALVRR 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EER+SLCQNCDW+G+G+STSAS+HKRQTINCY GCPS SELSS W F+LD PSGG S C
Sbjct: 61  VEERISLCQNCDWMGYGSSTSASTHKRQTINCYFGCPSVSELSSKWPFILDSPSGGGSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS KN+WGP E++I  NA+G                 VGA+SVP  +S 
Sbjct: 121 EQELGLMSIAENSTKNTWGPTENTICHNASG----------------IVGASSVPESSSV 164

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +N DQ   S N+  LPK+C           D DLYEDFNM EMDLN ENYEELFGVTLN
Sbjct: 165 PKNLDQPTRSPNS-SLPKVC-----------DADLYEDFNMAEMDLNLENYEELFGVTLN 212

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           +SEEL ENGGI+SLFGTKDM   DSN            GLVN +QP CSNA S DS++S+
Sbjct: 213 NSEELFENGGIDSLFGTKDMPIVDSN-----------FGLVNTIQPTCSNAPSTDSMISS 261

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFTAKQGHSSLSFSGLTG+SNAGDYQ+C ASSMLLMGEP WCPPC E+   SA+
Sbjct: 262 KTEPILCFTAKQGHSSLSFSGLTGESNAGDYQDCGASSMLLMGEPSWCPPCLESPLPSAN 321

Query: 361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTET 417
           RS AV RY EKKKTRKF+K+VRYASRKARADVRRRVKGRFVKAG+AYDYDPL QT +
Sbjct: 322 RSDAVKRYMEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAGDAYDYDPLGQTRS 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131908|ref|XP_002321208.1| predicted protein [Populus trichocarpa] gi|222861981|gb|EEE99523.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 303/417 (72%), Positives = 337/417 (80%), Gaps = 39/417 (9%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAA LCLSCDRNVH ANALSKRHSRTLLCERCNSQPALVRC
Sbjct: 1   MGYVCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSKRHSRTLLCERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
           AEER+SLCQNCDWIGHGTSTSAS+H+RQTIN YSGCPSASELSSIWSFVLDFPS GES C
Sbjct: 61  AEERISLCQNCDWIGHGTSTSASTHRRQTINSYSGCPSASELSSIWSFVLDFPSRGESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS  +SWGP E++I QNA+ G VE ND  +  KS V +G++S+P  +S 
Sbjct: 121 EQELGLMSIAENSTTDSWGPTENTIGQNAS-GVVEVNDRREIAKSGVWLGSSSIPESSSV 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
             N DQ   SAN   LPK                   DFNMDEMDL+ ENYEELFGVTLN
Sbjct: 180 PNNLDQTTRSANT-SLPK-------------------DFNMDEMDLSLENYEELFGVTLN 219

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           +SEELLENGGI+SLFGTKDMS                  +VNA+QPA SNAASADS+MS 
Sbjct: 220 NSEELLENGGIDSLFGTKDMS------------------VVNAVQPASSNAASADSMMSN 261

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT KQGHSSLSFSGL  +S+A DYQ+C ASSMLLMGEPPWCPPCPE+ F+SA+
Sbjct: 262 KTEPILCFTEKQGHSSLSFSGLNVESSAADYQDCGASSMLLMGEPPWCPPCPESPFSSAN 321

Query: 361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTET 417
           RS AV+RYKEKKKTR F+K+VRYASRKARADVRRRVKGRFVKAGEAYDYDPL+QT +
Sbjct: 322 RSDAVMRYKEKKKTRMFEKKVRYASRKARADVRRRVKGRFVKAGEAYDYDPLSQTRS 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462477|ref|XP_003601520.1| Zinc finger protein CONSTANS-LIKE protein [Medicago truncatula] gi|355490568|gb|AES71771.1| Zinc finger protein CONSTANS-LIKE protein [Medicago truncatula]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/418 (69%), Positives = 329/418 (78%), Gaps = 13/418 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH AN L++RHSRTLLCERC+SQPALVRC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
           +EE+VSLCQNCDW+GHG STS S+HKRQTINCYSGCPS++ELSSIWSFVLD PS  E+ C
Sbjct: 61  SEEKVSLCQNCDWLGHGNSTS-SNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELG MSI +N  +++W    D  +QN +    +A D+ D DKS    G +S+P  +  
Sbjct: 120 EQELGFMSINEN--RSAW---VDPKNQNVSDSD-KATDLPDLDKS--FAGTSSMPESSKE 171

Query: 181 TQNRDQIHGSANNPPLPKLCCSATK-DLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTL 239
            +  D+  GS N   +PKL C AT    A  +DDDLY DF+MDEMD+N ENY+ELFG+ L
Sbjct: 172 PRMLDRPDGSTNEC-VPKLYCPATNCREASDDDDDLYGDFDMDEMDINMENYDELFGMAL 230

Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMS 299
            HSEEL ENGG  SLFG K MSA DSNCQ A AAEGSS G VNA QPACS AASADSI+S
Sbjct: 231 THSEELFENGGFNSLFGAKAMSAGDSNCQDANAAEGSSIGHVNAAQPACSTAASADSILS 290

Query: 300 TKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPET--SFT 357
           TKTEP LC TAKQ  SSLSFSG+  D  AGDYQ+C ASSMLLMGEPPW   CPE      
Sbjct: 291 TKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQ 350

Query: 358 SASRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQT 415
           SA+R  AV+RYKEKKKTRKFDKRVRYASRK RADVRRRVKGRFVKAGEAYDYDPL+QT
Sbjct: 351 SANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQT 408

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462481|ref|XP_003601522.1| Zinc finger protein CONSTANS-LIKE protein [Medicago truncatula] gi|355490570|gb|AES71773.1| Zinc finger protein CONSTANS-LIKE protein [Medicago truncatula]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 295/423 (69%), Positives = 332/423 (78%), Gaps = 15/423 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH AN L++RHSRTLLCERC+SQPALVRC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
           +EE+VSLCQNCDW+GHG STS S+HKRQTINCYSGCPS++ELSSIWSFVLD PS  E+ C
Sbjct: 61  SEEKVSLCQNCDWLGHGNSTS-SNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELG MSI +N  +++W    D  +QN +    +A D+ D DKS    G +S+P  +  
Sbjct: 120 EQELGFMSINEN--RSAW---VDPKNQNVSDSD-KATDLPDLDKS--FAGTSSMPESSKE 171

Query: 181 TQNRDQIHGSANNPPLPKLCCSATK-DLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTL 239
            +  D+  GS N   +PKL C AT    A  +DDDLY DF+MDEMD+N ENY+ELFG+ L
Sbjct: 172 PRMLDRPDGSTNEC-VPKLYCPATNCREASDDDDDLYGDFDMDEMDINMENYDELFGMAL 230

Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMS 299
            HSEEL ENGG  SLFG K MSA DSNCQ A AAEGSS G VNA QPACS AASADSI+S
Sbjct: 231 THSEELFENGGFNSLFGAKAMSAGDSNCQDANAAEGSSIGHVNAAQPACSTAASADSILS 290

Query: 300 TKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPET--SFT 357
           TKTEP LC TAKQ  SSLSFSG+  D  AGDYQ+C ASSMLLMGEPPW   CPE      
Sbjct: 291 TKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQ 350

Query: 358 SASRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTET 417
           SA+R  AV+RYKEKKKTRKFDKRVRYASRK RADVRRRVKGRFVKAGEAYDYDPL+Q  T
Sbjct: 351 SANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQ--T 408

Query: 418 RSY 420
           RSY
Sbjct: 409 RSY 411

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
TAIR|locus:2164718	373	BBX8 "B-box domain protein 8"	0.376	0.423	0.660	1.3e-86
TAIR|locus:2091082	372	COL9 "CONSTANS-like 9" [Arabid	0.385	0.435	0.601	2e-56
TAIR|locus:2129860	330	BBX9 "B-box domain protein 9"	0.254	0.324	0.518	7.8e-48
TAIR|locus:2088748	364	BBX10 "B-box domain protein 10	0.261	0.302	0.482	7.6e-44
TAIR|locus:2199262	356	BBX27 "B-box domain protein 27	0.259	0.306	0.455	2.1e-32
TAIR|locus:2051104	402	BBX12 "B-box domain protein 12	0.280	0.293	0.416	7.7e-31
TAIR|locus:2010504	433	BBX13 "B-box domain protein 13	0.321	0.311	0.412	2.1e-29
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.238	0.301	0.470	9.7e-25
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.430	0.698	0.3	2.2e-16
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.266	0.380	0.373	2e-14

TAIR|locus:2164718 BBX8 "B-box domain protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
 Identities = 107/162 (66%), Positives = 125/162 (77%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query:    61 AEERVSLCQNCDWIGHG--TSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
             ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct:    61 SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query:   117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEAND 158
             ESACEQ +GLM+I ++      G  + ++ Q       +  D
Sbjct:   121 ESACEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMD 162

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2091082 COL9 "CONSTANS-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 116/193 (60%), Positives = 137/193 (70%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query:    61 AEERVSLCQNCDWIGHG---------TSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
              EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct:    61 VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query:   112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
                 G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct:   121 L--AGQSICEQELGMMNIDDD------GPTDKK--------------TCNEDKKDVLVGS 158

Query:   172 TSVPGINSTTQNR 184
             +S+P  +S  Q +
Sbjct:   159 SSIPETSSVPQGK 171

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP;RCA

TAIR|locus:2129860 BBX9 "B-box domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 7.8e-48, Sum P(3) = 7.8e-48
 Identities = 57/110 (51%), Positives = 78/110 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C  E 
Sbjct:     5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNEN 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS 114
             VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+ PS
Sbjct:    65 VSLCQGCQWTA--SNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE-PS 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2088748 BBX10 "B-box domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 54/112 (48%), Positives = 79/112 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC +E+
Sbjct:     5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGG 116
             VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P  G
Sbjct:    65 VSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVSG 114

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2199262 BBX27 "B-box domain protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
 Identities = 51/112 (45%), Positives = 75/112 (66%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct:    10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query:    61 AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
              + ++ LC  C+   HG  +S   H+R+ + CY+GCP A + + +W F V+D
Sbjct:    70 FDHKMFLCHGCNDKFHGGGSS--EHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2051104 BBX12 "B-box domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
 Identities = 50/120 (41%), Positives = 82/120 (68%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct:    12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   +D     +   E EL
Sbjct:    72 LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWG--IDLKGKKKEDDEDEL 129

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2010504 BBX13 "B-box domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 59/143 (41%), Positives = 94/143 (65%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct:     9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +   E ++
Sbjct:    69 LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDE-ENQV 125

Query:   125 GLMSIT-DN-SIK-NSW--GPNE 142
              +M++  DN  ++ +SW  G NE
Sbjct:   126 PMMAMMMDNFGMQLDSWVLGSNE 148

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 48/102 (47%), Positives = 69/102 (67%)

Query:     4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
             +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct:    12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query:    64 RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
             R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct:    72 RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 208 (78.3 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 57/190 (30%), Positives = 86/190 (45%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C    S+VYCR+DAA LC SCD  VH AN ++ RH R  +CE C   PA + C  + 
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGC--PSASELSSIWSFVLDFPSGGESACEQ 122
              +LC  CD   +  +  A  H+R  +        P+ S L+             +   + 
Sbjct:    95 AALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEEVDS 154

Query:   123 ELGLMSITDNSIKNSWG---PNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
              L L   +DN+  N+      N D+ + N++  G+   +V   D+    VG  S    N 
Sbjct:   155 WLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEV---DEYFDLVGYNSYYD-NR 210

Query:   180 TTQNRDQIHG 189
                N+D+ +G
Sbjct:   211 IENNQDRQYG 220

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 43/115 (37%), Positives = 58/115 (50%)

Query:     4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
             +CD C    + ++CR+DAA LC  CD  +H AN L+ RH R  LCE C   PA V C  +
Sbjct:     7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66

Query:    64 RVSLCQNCDWIGHGTSTSASSHKRQTIN-CYSGCPSASELSSIWSFVLDFPSGGE 117
               +LC  CD   H  +  +  H+R  I   Y     A   SS  +FV +   GG+
Sbjct:    67 AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFVDE--DGGD 119

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SSE5	COL9_ARATH	No assigned EC number	0.5727	0.8547	0.9650	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029061001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (405 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
pfam06203	45	pfam06203, CCT, CCT motif	2e-21
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	1e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	4e-04
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	0.003

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 86.5 bits (215), Expect = 2e-21
 Identities = 33/45 (73%), Positives = 38/45 (84%)

Query: 361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGE 405
           R  A+LRYKEK+KTRKFDK++RYASRKA A+ R RVKGRFVK  E
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
           CD  GD+ +  +C    A LC +CD   H      + H+  LL
Sbjct: 5  KCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
          +CD  G++   ++C +D A LC+ CD +VH        H R  L
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI 90
          LC+    +P  + C  +R  LC +CD   H      S H+R  +
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
          +C    ++   +YC      LC  C  + H      K H+   L
Sbjct: 5  LCPEHEEKPLELYCEDCQQLLCEECALSGH------KGHTVVPL 42

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.79
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.26
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.11
smart00336	42	BBOX B-Box-type zinc finger.	96.78
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.69
smart00336	42	BBOX B-Box-type zinc finger.	96.07
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	95.97
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	95.78
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	94.54
KOG4367	699	consensus Predicted Zn-finger protein [Function un	93.29

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.79  E-value=4.9e-20  Score=135.53  Aligned_cols=45  Identities=60%  Similarity=0.961  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhccCCCCccchhhhhhhhhhcCCCCceeecCCC
Q 014662          361 RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGE  405 (420)
Q Consensus       361 R~~~~~ry~eKk~~R~f~kkirY~~Rk~~Ad~R~RvkGrFvk~~~  405 (420)
                      |+++|+||+|||++|+|+|+|+|++||++||.|||||||||+..|
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            689999999999999999999999999999999999999999865

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.26  E-value=0.00019  Score=49.84  Aligned_cols=38  Identities=32%  Similarity=0.768  Sum_probs=33.5

Q ss_pred             ccCcCCCCCceeeccCCCcccCcccccCccCCCCCCCCCcceec
Q 014662           47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (420)
Q Consensus        47 LCd~C~s~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRvpv   90 (420)
                      +|+.|..+|+.+||..|.+.+|..|+..+|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6888988899999999999999999988763      7888875

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.11  E-value=0.00034  Score=48.56  Aligned_cols=39  Identities=38%  Similarity=0.809  Sum_probs=33.8

Q ss_pred             CCCCccCCCCeEEEecCCCcccCcccccccccccccccccccccc
Q 014662            3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (420)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~Rv~L   47 (420)
                      ..|+.++++++.+||..|.+.+|..|+...|.      .|.+++|
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36999999899999999999999999988775      5887764

>smart00336 BBOX B-Box-type zinc finger

Probab=96.78  E-value=0.0013  Score=46.32  Aligned_cols=41  Identities=29%  Similarity=0.545  Sum_probs=34.9

Q ss_pred             cccccCcCCCCCceeeccCCCcccCcccccCccCCCCCCCCCcceec
Q 014662           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (420)
Q Consensus        44 Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRvpv   90 (420)
                      |...|+.|...++.+||..|...+|..|....|      ..|.+.||
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            567899999999999999999999999997755      56777664

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.69  E-value=0.00082  Score=47.88  Aligned_cols=41  Identities=27%  Similarity=0.537  Sum_probs=34.6

Q ss_pred             cccccCcCCCCCceeeccCCCcccCcccccCccCCCCCCCCCcceec
Q 014662           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (420)
Q Consensus        44 Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRvpv   90 (420)
                      +...|..|...++.+||..|..+||..|....|.      +|..+||
T Consensus         2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~------~H~~~~i   42 (42)
T PF00643_consen    2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHK------GHKIVPI   42 (42)
T ss_dssp             SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTT------TSEEEEC
T ss_pred             cCccCccCCccceEEEecCCCCccCccCCCCCCC------CCEEeEC
Confidence            3468999999889999999999999999999874      3888775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=96.07  E-value=0.0052  Score=43.16  Aligned_cols=40  Identities=35%  Similarity=0.687  Sum_probs=33.4

Q ss_pred             CCCCCccCCCCeEEEecCCCcccCcccccccccccccccccccccc
Q 014662            2 GYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (420)
Q Consensus         2 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~Rv~L   47 (420)
                      ...|..++..++.+||..|.+.+|..|....|      +.|.+++|
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            36799999889999999999999999998766      35776654

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.97  E-value=0.0039  Score=44.36  Aligned_cols=40  Identities=18%  Similarity=0.337  Sum_probs=33.8

Q ss_pred             CCCCCccCCCCeEEEecCCCcccCcccccccccccccccccccccc
Q 014662            2 GYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (420)
Q Consensus         2 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~Rv~L   47 (420)
                      ...|+.|.+..+.+||..+...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4689999998899999999999999999998865      766554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=95.78  E-value=0.0032  Score=58.52  Aligned_cols=42  Identities=50%  Similarity=0.784  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHHHHHHhhccCCCCccchhhhhhhhhhcCCCCc
Q 014662          357 TSASRSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKG  398 (420)
Q Consensus       357 ~~~~R~~~~~ry~eKk~~R~f~kkirY~~Rk~~Ad~R~RvkG  398 (420)
                      ....|...+.||++|++.|.|.++|+|..||..|+.|+|+||
T Consensus       289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (340)
T KOG1601|consen  289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG  330 (340)
T ss_pred             ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence            457899999999999999999999999999999999999999

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=94.54  E-value=0.022  Score=38.21  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCccchh
Q 014662          359 ASRSKAVLRYKEKKKTRKFDKRVRYA  384 (420)
Q Consensus       359 ~~R~~~~~ry~eKk~~R~f~kkirY~  384 (420)
                      .+|.+.|+||.||||.|... +.-|.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ----HHHHHHHHHH------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            57999999999999999987 55553

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=93.29  E-value=0.023  Score=60.03  Aligned_cols=76  Identities=17%  Similarity=0.423  Sum_probs=59.9

Q ss_pred             CCCCccCCC--CeEEEecCCCcccCcccccccccccccccccccccc----------------cCcCCCCCceeeccCCC
Q 014662            3 YMCDFCGDQ--RSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL----------------CERCNSQPALVRCAEER   64 (420)
Q Consensus         3 ~~Cd~C~~~--~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~Rv~L----------------Cd~C~s~PA~v~C~~d~   64 (420)
                      -.|.+|+++  .|.|+|+.+....|.-|-.+.|-+-.-..+|.-++-                |..++...-..||..|.
T Consensus       163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck  242 (699)
T KOG4367|consen  163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCK  242 (699)
T ss_pred             hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecC
Confidence            368999987  599999999999999999999986555566655432                55555555679999999


Q ss_pred             cccCcccccCccCC
Q 014662           65 VSLCQNCDWIGHGT   78 (420)
Q Consensus        65 asLC~~CD~~~H~a   78 (420)
                      +++|-.|-..+.++
T Consensus       243 ~pvc~~clee~khs  256 (699)
T KOG4367|consen  243 MPVCYQCLEEGKHS  256 (699)
T ss_pred             ChHHHHHHHhhccc
Confidence            99999999876433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	98.37
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	93.75
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.74
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	92.04
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	91.96
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	89.57
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	89.51
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	88.23
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	87.97
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	86.12
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	83.72
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	81.2
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	80.49

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=98.37  E-value=1.9e-07  Score=76.71  Aligned_cols=84  Identities=18%  Similarity=0.445  Sum_probs=67.8

Q ss_pred             CCCCCccCC---CCeEEEecCCCcccCcccccccccccccccccccc-c---------ccCcCCCCCceeeccCCCcccC
Q 014662            2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT-L---------LCERCNSQPALVRCAEERVSLC   68 (420)
Q Consensus         2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~Rv-~---------LCd~C~s~PA~v~C~~d~asLC   68 (420)
                      +..|++|.+   .+|+++|..+.+.||..|...+|..+...++|..+ +         .|+.++..+..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            468999984   68999999999999999999999877777888865 2         3666655568899999999999


Q ss_pred             ccccc-CccCCCCCCCCCcceecc
Q 014662           69 QNCDW-IGHGTSTSASSHKRQTIN   91 (420)
Q Consensus        69 ~~CD~-~~H~an~~a~rHqRvpv~   91 (420)
                      ..|.. ..|.      .|..+||.
T Consensus        83 ~~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             HHHHHHTTTS------SSCBCCCC
T ss_pred             hhcCCCCCcC------CCCeecCC
Confidence            99986 4553      47666654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.74  E-value=0.022  Score=46.23  Aligned_cols=43  Identities=28%  Similarity=0.571  Sum_probs=36.3

Q ss_pred             cccCcCCC---CCceeeccCCCcccCcccccCccCCCCCCCCCcce
Q 014662           46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (420)
Q Consensus        46 ~LCd~C~s---~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRv   88 (420)
                      +.|++|..   .+|+.+|..|..+||..|....|..+....+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            57999984   57999999999999999998878766666788876

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.04  E-value=0.082  Score=39.49  Aligned_cols=46  Identities=15%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             cccccccccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014662           40 KRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (420)
Q Consensus        40 ~RH~Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~   91 (420)
                      .+..+..+|..+...+..+||..|...+|..|... .|      ..|..+||.
T Consensus         3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   49 (64)
T 2d8u_A            3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   49 (64)
T ss_dssp             CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred             CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHH
Confidence            34556677888877889999999999999999864 45      357766665

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=91.96  E-value=0.079  Score=37.86  Aligned_cols=44  Identities=23%  Similarity=0.547  Sum_probs=35.3

Q ss_pred             cccccccCcCCCCCceeeccCCCcccCcccccCccCCCCCCCCCcceecc
Q 014662           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (420)
Q Consensus        42 H~Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRvpv~   91 (420)
                      ..|...|..+...+-.+||..|...+|..|....|      ..|..+||.
T Consensus         3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~   46 (50)
T 2yvr_A            3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLE   46 (50)
T ss_dssp             CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETT
T ss_pred             CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHH
Confidence            45667788887788899999999999999987555      367777775

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=89.57  E-value=0.1  Score=32.56  Aligned_cols=19  Identities=37%  Similarity=0.527  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHhhccCCCC
Q 014662          361 RSKAVLRYKEKKKTRKFDK  379 (420)
Q Consensus       361 R~~~~~ry~eKk~~R~f~k  379 (420)
                      |...|+||.||||.|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            5678999999999987654

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=89.51  E-value=0.13  Score=40.78  Aligned_cols=44  Identities=27%  Similarity=0.559  Sum_probs=35.6

Q ss_pred             ccccCcCCC---CCceeeccCCCcccCcccccCccCCCCCCCCCcce
Q 014662           45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (420)
Q Consensus        45 v~LCd~C~s---~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRv   88 (420)
                      ...|+.|..   .+|+..|..|.+++|..|-...|.......+|+.+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            467999986   56899999999999999987667766556678765

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=88.23  E-value=0.24  Score=35.07  Aligned_cols=41  Identities=15%  Similarity=0.331  Sum_probs=30.9

Q ss_pred             ccccCcCCCCCceeeccCCCcccCccccc-CccCCCCCCCCCcceecc
Q 014662           45 TLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN   91 (420)
Q Consensus        45 v~LCd~C~s~PA~v~C~~d~asLC~~CD~-~~H~an~~a~rHqRvpv~   91 (420)
                      ..+|......+..+||..|...+|..|.. ..|      ..|..+||.
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence            34677776667889999999999999973 345      357767764

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=87.97  E-value=0.32  Score=35.08  Aligned_cols=40  Identities=20%  Similarity=0.472  Sum_probs=31.7

Q ss_pred             ccccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014662           45 TLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (420)
Q Consensus        45 v~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~   91 (420)
                      ..+|..+. .+-.+||..|...+|..|... .|      ..|..+||.
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   48 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLS   48 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECC
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHH
Confidence            34687776 678899999999999999874 44      467777776

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=86.12  E-value=0.55  Score=32.10  Aligned_cols=27  Identities=15%  Similarity=0.385  Sum_probs=22.6

Q ss_pred             ccCcCCCCCceeeccCCCcccCcccccC
Q 014662           47 LCERCNSQPALVRCAEERVSLCQNCDWI   74 (420)
Q Consensus        47 LCd~C~s~PA~v~C~~d~asLC~~CD~~   74 (420)
                      +|.... .+-.+||..|...+|..|...
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~   31 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDS   31 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence            566665 567899999999999999873

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=83.72  E-value=0.54  Score=36.81  Aligned_cols=43  Identities=19%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             ccccccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014662           43 SRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (420)
Q Consensus        43 ~Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~   91 (420)
                      .+..+|..+...+-.+||..|...+|..|... .|      ..|..+||.
T Consensus        16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   59 (84)
T 2dja_A           16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN   59 (84)
T ss_dssp             SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred             CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHH
Confidence            34456777766678999999999999999873 44      357666665

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.20  E-value=0.89  Score=33.77  Aligned_cols=41  Identities=22%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             cccccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014662           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (420)
Q Consensus        44 Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~   91 (420)
                      +..+|..+. .+-.+||..|...+|..|... .|      ..|..+||.
T Consensus        13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~   54 (59)
T 2yrg_A           13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTS   54 (59)
T ss_dssp             CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECC
T ss_pred             cCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHH
Confidence            334677776 568899999999999999874 34      467777775

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=80.49  E-value=0.62  Score=36.73  Aligned_cols=43  Identities=21%  Similarity=0.485  Sum_probs=35.5

Q ss_pred             CCCCCccCC---CCeEEEecCCCcccCccccccccccccccccccc
Q 014662            2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR   44 (420)
Q Consensus         2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~R   44 (420)
                      +..||+|..   .+|+-.|....+.||..|=...|......++|.-
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            368999975   6899999999999999998877876666677764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	94.74
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	94.46
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	92.06
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	89.22
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	88.08
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	81.03

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.007  Score=44.96  Aligned_cols=50  Identities=18%  Similarity=0.496  Sum_probs=39.7

Q ss_pred             ccccccccccccCcCCCCCceeeccCCCcccCcccccCccCCCCCCCCCcceecc
Q 014662           37 ALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (420)
Q Consensus        37 ~Ls~RH~Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRvpv~   91 (420)
                      ++...+.|...|..+...+..+||..|...+|..|...+++     ..|...+|.
T Consensus         3 P~~~~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H-----k~H~~~~i~   52 (71)
T d2djaa1           3 PVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH-----RDHQVASLN   52 (71)
T ss_dssp             CCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT-----TTCCBCCCC
T ss_pred             CCCccccCCCcCcccCCccceeEcCCCCceeccccccCCCC-----CCCcCcCHH
Confidence            34556788889999988999999999999999999765422     357776666

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0076  Score=41.94  Aligned_cols=44  Identities=20%  Similarity=0.550  Sum_probs=36.2

Q ss_pred             cccccccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014662           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (420)
Q Consensus        42 H~Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~   91 (420)
                      |.|..+|.....++..+||..|..++|..|... .|      ..|.-.+|.
T Consensus         2 ~l~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H------~~H~~~~l~   46 (47)
T d2dq5a1           2 HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRH------RDHQVAALS   46 (47)
T ss_dssp             CCCCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSST------TSSCCCCSC
T ss_pred             CccCccchhhCCCcceEEcCCCCccCCccCcCcCCc------CCCeEeeCC
Confidence            778899999988899999999999999999765 35      347666653

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.034  Score=39.02  Aligned_cols=40  Identities=15%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             cccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014662           46 LLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (420)
Q Consensus        46 ~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~   91 (420)
                      |+|......+..+||..|..++|..|... .|      ..|.-.+|.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~   42 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   42 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHH
Confidence            57888888889999999999999999764 44      347666665

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.099  Score=34.95  Aligned_cols=37  Identities=22%  Similarity=0.521  Sum_probs=28.7

Q ss_pred             ccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceec
Q 014662           47 LCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTI   90 (420)
Q Consensus        47 LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv   90 (420)
                      +|...+ .+-.+||..|...+|..|... .|      ..|.-+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            566664 667899999999999999865 34      45777775

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=88.08  E-value=0.17  Score=33.59  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=26.7

Q ss_pred             cCcCCCCCceeeccCCCcccCcccccCc-cCCCCCCCCCcceec
Q 014662           48 CERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTI   90 (420)
Q Consensus        48 Cd~C~s~PA~v~C~~d~asLC~~CD~~~-H~an~~a~rHqRvpv   90 (420)
                      |...+ .+-.+||..|...+|..|...+ |      +.|.-+||
T Consensus         3 C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   39 (39)
T d1frea_           3 CSEHD-ERLKLYCKDDGTLSCVICRDSLKH------ASHNFLPI   39 (39)
T ss_dssp             CCSSC-SSCCCCCCSSSSSSCCTTSSCSSC------TTCCCCCC
T ss_pred             CcccC-cceeEEcccCCcEeeccCcCCCCc------CCCcEeeC
Confidence            45553 4678999999999999997643 4      45776665

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.03  E-value=0.28  Score=35.00  Aligned_cols=39  Identities=18%  Similarity=0.453  Sum_probs=31.1

Q ss_pred             cccCcCCCCCceeeccCCCcccCcccccCccCCCCCCCCCcceecc
Q 014662           46 LLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (420)
Q Consensus        46 ~LCd~C~s~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRvpv~   91 (420)
                      .+|..++ .+-.+||..|...+|..|-...|      .+|..++|.
T Consensus        12 ~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l~   50 (59)
T d2csva1          12 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVE   50 (59)
T ss_dssp             CBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHH
T ss_pred             CchhhhC-CccceECCCCCceECcccCcccC------CCCCeeCHH
Confidence            3688885 67889999999999999976556      358777764