Citrus Sinensis ID: 014672


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
MDYFEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGECFSGDISVLGDYSADCPLDPDEIRDSERPTKLRLPQPDVDIKSGMTIRESVRDVFVGGSGYIVNDVKFTVNQAVEPVEKGITKFNEKIHKISQNIKRHDKDRRKTKDDSCIASSHTRRVIRGIDDPLLNGSISDSAPTRKKHRRKSGYTSGESGGESSSDQNYGGYEIRGRRWVTKD
ccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcEEEEccc
cccHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccccccccHHHccccccccHHHHHccccccEEEcccccccccccccccccccEEEEccccEEEHcEEEEHHHcccHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccccEEcccccccccccccccccccccccccccEEEcccccccccccccccEEEEccEEEEcc
mdyfeqfvsltnptvsidcEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEregrashkapllehnsergivthpfpmnyilkpwelGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCegefkwgcgypYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLglfkspiaqglqfksSVQDFIICIEMAIASIVHlyvfpakpyeqmgecfsgdisvlgdysadcpldpdeirdserptklrlpqpdvdiksgmtiRESVRDVfvggsgyivndVKFTVNQAVEPVEKGITKFNEKIHKISQNIKrhdkdrrktkddsciasshtrrvirgiddpllngsisdsaptrkkhrrksgytsgesggesssdqnyggyeirgrrwvtkd
mdyfeqfvsltnptvsidcEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRashkapllehnsergivthpfPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGECFSGDISVLGDYSADCPLDPdeirdserptklrlpqpdvdiksgmtireSVRDVFVGGSGYIVNDVKFTVNQAVEPVEKGITKFNEKIHKisqnikrhdkdrrktkddsciasshtrrvirgiddpllngsisdsaptrkkhrrksgytsgesggesssdqnyggyeirgrrwvtkd
MDYFEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGECFSGDISVLGDYSADCPLDPDEIRDSERPTKLRLPQPDVDIKSGMTIRESVRDVFVGGSGYIVNDVKFTVNQAVEPVEKGITKFNEKIHKISQNIkrhdkdrrktkddSCIASSHTRRVIRGIDDPLLNGSISDSAPTRKKHRRKsgytsgesggesssDQNYGGYEIRGRRWVTKD
**YFEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFM******************RGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGECFSGDISVLGDYSADC****************************MTIRESVRDVFVGGSGYIVNDVKFTVNQAVEPVEKGITKFNEKIH****************************************************************************************
MDYFEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGE**SGDISVLGDYSADCPLDPDEIRDSE*******************IRESVRDVFVGGSGYIVNDVKFTVNQAVEPVEKGITKFNEK********************************************************************************I**RRW****
MDYFEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGECFSGDISVLGDYSADCPLDPDEIRDSERPTKLRLPQPDVDIKSGMTIRESVRDVFVGGSGYIVNDVKFTVNQAVEPVEKGITKFNEKIHKISQ******************ASSHTRRVIRGIDDPLLNGSISDS**************************NYGGYEIRGRRWVTKD
MDYFEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGECFSGDISV*G**SADCPLDPDEIRDSERPTKLRLPQ*********TIRESVRDVFVGGSGYIVNDVKFTVNQAVEPVEKGITKFNEKIHKISQNI**********************RVIRGIDDPLLN*********************************YGGYEIRGRRWVTKD
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDYFEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGECFSGDISVLGDYSADCPLDPDEIRDSERPTKLRLPQPDVDIKSGMTIRESVRDVFVGGSGYIVNDVKFTVNQAVEPVEKGITKFNEKIHKISQNIKRHDKDRRKTKDDSCIASSHTRRVIRGIDDPLLNGSISDSAPTRKKHRRKSGYTSGESGGESSSDQNYGGYEIRGRRWVTKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query420 2.2.26 [Sep-21-2011]
Q3TPR7525 Transmembrane protein 184 no no 0.55 0.44 0.346 4e-35
Q17QL9438 Transmembrane protein 184 yes no 0.569 0.545 0.315 6e-35
Q5RET6438 Transmembrane protein 184 yes no 0.569 0.545 0.311 3e-34
Q9NVA4438 Transmembrane protein 184 yes no 0.569 0.545 0.311 3e-34
Q810F5503 Transmembrane protein 184 yes no 0.538 0.449 0.329 5e-34
Q5ZMP3445 Transmembrane protein 184 yes no 0.566 0.534 0.313 1e-32
Q6GQE1444 Transmembrane protein 184 N/A no 0.554 0.524 0.308 3e-32
Q28CV2443 Transmembrane protein 184 yes no 0.554 0.525 0.304 8e-32
Q54WM0351 Transmembrane protein 184 yes no 0.502 0.601 0.354 3e-29
Q4QQS1425 Transmembrane protein 184 no no 0.478 0.472 0.339 5e-27
>sp|Q3TPR7|T184C_MOUSE Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1 Back     alignment and function desciption
 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 136/254 (53%), Gaps = 23/254 (9%)

Query: 5   EQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPL 64
           + +V+L  P ++I  +  R+CYE++ +Y F  +L   L     TI F            L
Sbjct: 96  DSWVALVYPKIAIYVDTWRECYEAYVIYNFMIFLTNYL-----TIRFPN----------L 140

Query: 65  LEHNSERGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVY 124
           + H   +    H  P+     PW +G       K+G++QY +++ +T + A+V E  +VY
Sbjct: 141 ILHLEAKDQQNHILPLC-CCPPWAMGEMLLFRCKLGVLQYTVVRPITTVTALVCEILDVY 199

Query: 125 CEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTW 184
            EG F +   + Y+ ++ N SQ +A+YCL+ FY V K+EL+ I+P+ KFL  K +VF+++
Sbjct: 200 DEGNFGFSNAWTYLVILNNLSQLFAMYCLLLFYKVLKEELSPIQPVGKFLCVKLVVFVSF 259

Query: 185 WQGVAIALLYSLGLFKSPIAQGLQFKSSV----QDFIICIEMAIASIVHLYVFPAKPY-- 238
           WQ V IALL  LG+         Q   +V    QDFIICIEM  A+I H Y F  KPY  
Sbjct: 260 WQAVLIALLVKLGVISEKRTWEWQSAEAVATGLQDFIICIEMFFAAIAHHYTFSYKPYVH 319

Query: 239 -EQMGECFSGDISV 251
             + G CF   +++
Sbjct: 320 EAEEGSCFDSFLAM 333




Possible tumor suppressor which may play a role in cell growth.
Mus musculus (taxid: 10090)
>sp|Q17QL9|T184C_BOVIN Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q5RET6|T184C_PONAB Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q9NVA4|T184C_HUMAN Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=2 SV=2 Back     alignment and function description
>sp|Q810F5|T184C_RAT Transmembrane protein 184C OS=Rattus norvegicus GN=Tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q5ZMP3|T184C_CHICK Transmembrane protein 184C OS=Gallus gallus GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q6GQE1|T184C_XENLA Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q28CV2|T184C_XENTR Transmembrane protein 184C OS=Xenopus tropicalis GN=tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q54WM0|T1843_DICDI Transmembrane protein 184 homolog DDB_G0279555 OS=Dictyostelium discoideum GN=tmem184C PE=3 SV=1 Back     alignment and function description
>sp|Q4QQS1|T184A_RAT Transmembrane protein 184A OS=Rattus norvegicus GN=Tmem184a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
356510628486 PREDICTED: transmembrane protein 184C-li 0.992 0.858 0.817 0.0
225428267482 PREDICTED: transmembrane protein 184C [V 0.985 0.858 0.836 0.0
356516229492 PREDICTED: transmembrane protein 184C-li 0.992 0.847 0.823 0.0
357467625480 Transmembrane protein 184C [Medicago tru 0.990 0.866 0.819 0.0
224102803488 predicted protein [Populus trichocarpa] 0.990 0.852 0.826 0.0
42573219485 uncharacterized protein [Arabidopsis tha 0.990 0.857 0.801 0.0
4539344466 putative protein [Arabidopsis thaliana] 0.988 0.890 0.800 0.0
297797818483 hypothetical protein ARALYDRAFT_352843 [ 0.988 0.859 0.803 0.0
449454279476 PREDICTED: transmembrane protein 184C-li 0.988 0.871 0.762 0.0
413935029482 hypothetical protein ZEAMMB73_706097 [Ze 0.971 0.846 0.680 1e-171
>gi|356510628|ref|XP_003524039.1| PREDICTED: transmembrane protein 184C-like [Glycine max] Back     alignment and taxonomy information
 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/421 (81%), Positives = 383/421 (90%), Gaps = 4/421 (0%)

Query: 4   FEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAP 63
           FE FVSL NP++S+DCEILRDCYESFAMYCFGRYLVACLGG+ERT++FMER+ R S K P
Sbjct: 66  FESFVSLVNPSISVDCEILRDCYESFAMYCFGRYLVACLGGDERTVQFMERQSRLSVKTP 125

Query: 64  LLEHNS--ERGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAF 121
           LL+H+S  ++  V HPFP+NY LKPW+LGR FYQ++K GIVQYM+ K+ TA+LAV+LEAF
Sbjct: 126 LLQHSSSSDKATVNHPFPLNYFLKPWKLGRAFYQVIKFGIVQYMLTKAFTAILAVILEAF 185

Query: 122 NVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVF 181
            VYCEGEFK GCGYPYMAVVLNFSQSWALYCL+QFYTVTKDELAHIKPLAKFLTFKSIVF
Sbjct: 186 GVYCEGEFKVGCGYPYMAVVLNFSQSWALYCLVQFYTVTKDELAHIKPLAKFLTFKSIVF 245

Query: 182 LTWWQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQM 241
           LTWWQGVAIALL + GLFKSPIAQGLQFKSSVQDFIICIEM IASIVHLYVFPAKPYE+M
Sbjct: 246 LTWWQGVAIALLSTFGLFKSPIAQGLQFKSSVQDFIICIEMGIASIVHLYVFPAKPYERM 305

Query: 242 GECFSGDISVLGDYSADCPLDPDEIRDSERPTKLRLPQPDVDIKSGMTIRESVRDVFVGG 301
           G+ FSG +SVLGDYSADCPLDPDEIRDSERPTKLRLP PDVD KSGMTIRESV DV +GG
Sbjct: 306 GDRFSGSVSVLGDYSADCPLDPDEIRDSERPTKLRLPTPDVDTKSGMTIRESVCDVVIGG 365

Query: 302 SGYIVNDVKFTVNQAVEPVEKGITKFNEKIHKISQNIKRHDKDRRKTKDDSCIA-SSHTR 360
            GYIV DVKFTV+QAVEPVEKGIT+FNEK+H+IS+NIK+HDKD R+TKDDSCIA SS  R
Sbjct: 366 GGYIVKDVKFTVHQAVEPVEKGITRFNEKLHRISENIKKHDKDGRRTKDDSCIATSSPAR 425

Query: 361 RVIRGIDDPLLNGSISDSAPTR-KKHRRKSGYTSGESGGESSSDQNYGGYEIRGRRWVTK 419
           RVIRGIDDPLLNGS+SDS  +R KKHRRKSGYTS E GGESSS+Q++GGY+IRGRRWVTK
Sbjct: 426 RVIRGIDDPLLNGSVSDSGMSRGKKHRRKSGYTSAEGGGESSSEQSFGGYQIRGRRWVTK 485

Query: 420 D 420
           +
Sbjct: 486 E 486




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428267|ref|XP_002282426.1| PREDICTED: transmembrane protein 184C [Vitis vinifera] gi|297744492|emb|CBI37754.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516229|ref|XP_003526798.1| PREDICTED: transmembrane protein 184C-like [Glycine max] Back     alignment and taxonomy information
>gi|357467625|ref|XP_003604097.1| Transmembrane protein 184C [Medicago truncatula] gi|355493145|gb|AES74348.1| Transmembrane protein 184C [Medicago truncatula] Back     alignment and taxonomy information
>gi|224102803|ref|XP_002312807.1| predicted protein [Populus trichocarpa] gi|222849215|gb|EEE86762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42573219|ref|NP_974706.1| uncharacterized protein [Arabidopsis thaliana] gi|332661519|gb|AEE86919.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4539344|emb|CAB37492.1| putative protein [Arabidopsis thaliana] gi|7270820|emb|CAB80501.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297797818|ref|XP_002866793.1| hypothetical protein ARALYDRAFT_352843 [Arabidopsis lyrata subsp. lyrata] gi|297312629|gb|EFH43052.1| hypothetical protein ARALYDRAFT_352843 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449454279|ref|XP_004144883.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] gi|449473224|ref|XP_004153822.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] gi|449500168|ref|XP_004161023.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|413935029|gb|AFW69580.1| hypothetical protein ZEAMMB73_706097 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
TAIR|locus:2121763485 LAZ1 "AT4G38360" [Arabidopsis 0.990 0.857 0.751 1.6e-173
TAIR|locus:2196005484 AT1G77220 "AT1G77220" [Arabido 0.904 0.785 0.526 1.2e-106
TAIR|locus:2201235403 AT1G23070 "AT1G23070" [Arabido 0.738 0.769 0.466 1.3e-75
MGI|MGI:2384562525 Tmem184c "transmembrane protei 0.669 0.535 0.325 1.5e-35
UNIPROTKB|A5D9H3470 TMEM34 "Transmembrane protein 0.55 0.491 0.330 1.1e-34
UNIPROTKB|Q17QL9438 TMEM184C "Transmembrane protei 0.55 0.527 0.330 1.1e-34
UNIPROTKB|Q9NVA4438 TMEM184C "Transmembrane protei 0.55 0.527 0.330 2.8e-34
RGD|727852503 Tmem184c "transmembrane protei 0.55 0.459 0.338 9.5e-34
UNIPROTKB|Q5ZMP3445 TMEM184C "Transmembrane protei 0.607 0.573 0.306 3.7e-32
UNIPROTKB|F1P1L2422 TMEM184A "Uncharacterized prot 0.545 0.542 0.332 8.2e-28
TAIR|locus:2121763 LAZ1 "AT4G38360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1686 (598.6 bits), Expect = 1.6e-173, P = 1.6e-173
 Identities = 314/418 (75%), Positives = 347/418 (83%)

Query:     5 EQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPL 64
             E F SL  P++S+DC ILRDCYESFAMYCFGRYLVAC+GGEERTIEFMER+GR S K PL
Sbjct:    68 ESFASLVKPSISVDCGILRDCYESFAMYCFGRYLVACIGGEERTIEFMERQGRKSFKTPL 127

Query:    65 LEHNSERGIVTHPFPMNYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVY 124
             L+H  E+GI+ HPFPMN  LKPW L  WFYQ+VK GIVQYMIIKSLTAL A++LEAF VY
Sbjct:   128 LDHKDEKGIIKHPFPMNLFLKPWRLSPWFYQVVKFGIVQYMIIKSLTALTALILEAFGVY 187

Query:   125 CEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTW 184
             CEGEFKWGCGYPY+AVVLNFSQSWALYCL+QFY  TKDELAHI+PLAKFLTFKSIVFLTW
Sbjct:   188 CEGEFKWGCGYPYLAVVLNFSQSWALYCLVQFYGATKDELAHIQPLAKFLTFKSIVFLTW 247

Query:   185 WQGVAIALLYSLGLFKSPIAQGLQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGEC 244
             WQGVAIALL SLGLFKS IAQ LQ K+SVQDFIICIEM IAS+VHLYVFPAKPY  MG+ 
Sbjct:   248 WQGVAIALLSSLGLFKSSIAQSLQLKTSVQDFIICIEMGIASVVHLYVFPAKPYGLMGDR 307

Query:   245 FSGDISVLGDY-SADCPLDPDEIRDSERPTKLRLPQPDVDIKSGMTIRESVRDVFVGGSG 303
             F+G +SVLGDY S DCP+DPDEIRDSERPTK+RLP PDVDI+SGMTI+ES+RDVFVGG  
Sbjct:   308 FTGSVSVLGDYASVDCPIDPDEIRDSERPTKVRLPHPDVDIRSGMTIKESMRDVFVGGGE 367

Query:   304 YIVNDVKFTVNQAVEPVEKGITKFNEKIHKISQNIXXXXXXXXXXXXXSCIASSHTRRVI 363
             YIV DV+FTV QAVEP+EK ITKFNEK+HKISQNI             SC++SS +RRVI
Sbjct:   368 YIVKDVRFTVTQAVEPMEKSITKFNEKLHKISQNIKKHDKEKRRVKDDSCMSSSPSRRVI 427

Query:   364 RGIDDPLLNGSISDSAPTR-KKHRRKXXXXXXXXXXXXXXDQNYGGYEIRGRRWVTKD 420
             RGIDDPLLNGS SDS  TR KKHRRK              DQ YGG+E+RGRRW+TKD
Sbjct:   428 RGIDDPLLNGSFSDSGVTRTKKHRRKSGYTSAESGGESSSDQAYGGFEVRGRRWITKD 485




GO:0008150 "biological_process" evidence=ND
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
TAIR|locus:2196005 AT1G77220 "AT1G77220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201235 AT1G23070 "AT1G23070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2384562 Tmem184c "transmembrane protein 184C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A5D9H3 TMEM34 "Transmembrane protein 34" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QL9 TMEM184C "Transmembrane protein 184C" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVA4 TMEM184C "Transmembrane protein 184C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|727852 Tmem184c "transmembrane protein 184C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMP3 TMEM184C "Transmembrane protein 184C" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1L2 TMEM184A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
AT4G38360
unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF300 (InterPro-IPR005178); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G77220.1); Has 605 Blast hits to 598 proteins in 140 species- Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 128; Plants - 129; Viruses - 0; Other Eukaryotes - 90 (source- NCBI BLink). (485 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G42000
ORMDL family protein; ORMDL family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (154 aa)
       0.675
LAG13
LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3); LAG1 LONGEVITY ASSURANCE HOMOLOG 3 (LAG13); FUNCTIO [...] (308 aa)
       0.675
LAG1
LAG1; LAG1 homolog 1 ; Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring [...] (310 aa)
       0.659
AT2G29525
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (289 aa)
       0.567
SBH2
SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase; Encodes one of the two [...] (259 aa)
       0.563
AT1G01230
ORMDL family protein; ORMDL family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (157 aa)
       0.563
AT2G37940
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (305 aa)
       0.537
ACD11
ACD11 (ACCELERATED CELL DEATH 11); sphingosine transmembrane transporter; Gene product transpor [...] (206 aa)
       0.536
AT3G54020
phosphatidic acid phosphatase-related / PAP2-related; phosphatidic acid phosphatase-related / P [...] (305 aa)
       0.486
LOH2
LOH2 (LAG ONE HOMOLOGUE 2); LAG1 homolog . Loss of function mutant is sensitive to AAL-toxin. L [...] (296 aa)
       0.467

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
pfam03619272 pfam03619, Solute_trans_a, Organic solute transpor 1e-103
>gnl|CDD|217643 pfam03619, Solute_trans_a, Organic solute transporter Ostalpha Back     alignment and domain information
 Score =  307 bits (790), Expect = e-103
 Identities = 100/235 (42%), Positives = 138/235 (58%), Gaps = 19/235 (8%)

Query: 7   FVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLE 66
           F+SL  P  +I  +++RDCYE+F +Y F   L+A LGGE   I  +E             
Sbjct: 54  FLSLLFPKAAIYFDLIRDCYEAFVIYTFFSLLIAYLGGERNIIRLLE------------- 100

Query: 67  HNSERGIVTHPFPMN--YILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVY 124
               +  + HPFP+    +L+       F+   K G++QY+++K L A+LA++L+AF VY
Sbjct: 101 ---GKPPIRHPFPLLTKCLLRTDRSDPTFFLRCKRGVLQYVVVKPLCAILAIILQAFGVY 157

Query: 125 CEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTW 184
            EG F    GY Y+ ++ N S S ALYCL+ FY   KDELA  KPL KFL  K I+F ++
Sbjct: 158 GEGSFSPDSGYLYLTIIYNISVSLALYCLVLFYKALKDELAPFKPLLKFLCIKLIIFFSF 217

Query: 185 WQGVAIALLYSLGLFKSPIAQGLQ-FKSSVQDFIICIEMAIASIVHLYVFPAKPY 238
           WQGV I++L SLGL K   A       + +Q+F+ICIEM I +I HLY FP KPY
Sbjct: 218 WQGVLISILVSLGLIKPTEAWEEPELSAGIQNFLICIEMFIFAIAHLYAFPYKPY 272


This family is a transmembrane organic solute transport protein. In vertebrates these proteins form a complex with Ostbeta, and function as bile transporters. In plants they may transport brassinosteroid-like compounds and act as regulators of cell death. Length = 272

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 420
KOG2641386 consensus Predicted seven transmembrane receptor - 100.0
PF03619274 Solute_trans_a: Organic solute transporter Ostalph 100.0
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms] Back     alignment and domain information
Probab=100.00  E-value=3.6e-63  Score=502.07  Aligned_cols=272  Identities=38%  Similarity=0.608  Sum_probs=242.1

Q ss_pred             eeeeeccccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhcccCCCCccccccccCCccccCcccccc
Q 014672            4 FEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPMNYI   83 (420)
Q Consensus         4 I~S~LSL~~P~~aiy~d~iRdcYEAfvIYsFf~LLi~yLGGe~~~i~~L~~~~~~~~~~pll~~~~~~~~~~h~~P~~cc   83 (420)
                      +.||+||++|++++|++++||||||||||+|++||++|+|||++++..++++.               ...+|++|+|||
T Consensus        83 ~~S~vsl~~p~~~~~~~~vr~~Yeaf~ly~F~sLl~~ylGGe~~~v~~l~~~~---------------~~~~~~~P~cc~  147 (386)
T KOG2641|consen   83 VASFVSLLVPRVAFYLDTVRECYEAFVLYVFLSLLFHYLGGEQNIVTELEGRL---------------IRVNHTPPFCCF  147 (386)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHhccC---------------CcccCCCCceec
Confidence            46899999999999999999999999999999999999999999999987532               125799999988


Q ss_pred             ccccc-cChHHHHHHHhhheehhhHHHHHHHHHHHHHHhhccccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q 014672           84 LKPWE-LGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKD  162 (420)
Q Consensus        84 lpp~~-lg~~fl~~~K~gVLQYvivKPl~ailaiIle~~GvY~eg~fs~~~~ylyl~iI~niSv~lALY~Lv~FY~atk~  162 (420)
                      +||+. +++.++++||+||+||+|+||++++++++++++|+|++|++++   |+|+++++|+|++||||||.+||+++|+
T Consensus       148 ~~p~~~~~~~~lr~~K~~vlQ~~ivkp~~~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~  224 (386)
T KOG2641|consen  148 FPPTVRLTPKFLRRCKQGVLQYPIVKPFLALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKD  224 (386)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88775 8999999999999999999999999999999999999999998   9999999999999999999999999999


Q ss_pred             hhcccCCchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcch-hhHHHHHhhHHHHHHHHHHHHHHhhcccccccccc
Q 014672          163 ELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQG-LQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQM  241 (420)
Q Consensus       163 ~L~p~kPl~KFl~IK~VVFltfwQ~viIsiL~~~GvI~~~~~~~-~~~~~~iqd~LICiEM~i~AIlh~~AFp~~pY~~~  241 (420)
                      +|.|++|++||+|+|+|||++||||++|++|...|.+++...+. ...++++||++||+||+++|++|+||||++||...
T Consensus       225 ~L~py~p~~KF~~vk~ivf~~~wQg~vi~~l~~~g~~~~~~~~~~~~~~~~iQnfiiciEM~i~ai~~~~af~~~~ya~~  304 (386)
T KOG2641|consen  225 ELSPYQPVVKFLCVKLIVFLSFWQGIVLAILVKLGKIGPSYFDEVGTVAYGIQNFLICIEMLIAAIAHFYAFPAAPYALF  304 (386)
T ss_pred             HhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHhCCcchhccc
Confidence            99999999999999999999999999999999999998755442 47899999999999999999999999999999986


Q ss_pred             cccccCcccccccc-ccCCCCCcccccCcCCcccccCCC-CCCCCccccccccccceeEec
Q 014672          242 GECFSGDISVLGDY-SADCPLDPDEIRDSERPTKLRLPQ-PDVDIKSGMTIRESVRDVFVG  300 (420)
Q Consensus       242 ~~~~~~~~~~~~d~-~~~~~~d~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~es~~d~~~~  300 (420)
                      .++..       |+ +.+.....+.++|+.+|+...... ++.+.+-....++|.||+..+
T Consensus       305 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  358 (386)
T KOG2641|consen  305 DERSC-------DYRSVDMFSISSSLWDSLMPNDLCSDAIRNFSPTYQDYTPQSDQDALSA  358 (386)
T ss_pred             ccccc-------ccccccccccchHHHHhhcccCcccccccCCCcccccccccccCccccC
Confidence            55533       45 556666667888888888877653 344445468899999998777



>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00