Citrus Sinensis ID: 014676
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 420 | ||||||
| 255554737 | 430 | conserved hypothetical protein [Ricinus | 1.0 | 0.976 | 0.795 | 0.0 | |
| 356555714 | 417 | PREDICTED: uncharacterized membrane prot | 0.961 | 0.968 | 0.748 | 1e-173 | |
| 356532329 | 420 | PREDICTED: uncharacterized membrane prot | 0.964 | 0.964 | 0.735 | 1e-171 | |
| 449434004 | 439 | PREDICTED: uncharacterized membrane prot | 0.992 | 0.949 | 0.710 | 1e-171 | |
| 449530390 | 435 | PREDICTED: uncharacterized membrane prot | 0.983 | 0.949 | 0.712 | 1e-170 | |
| 357447785 | 428 | Membrane protein, putative [Medicago tru | 0.983 | 0.964 | 0.731 | 1e-170 | |
| 224116050 | 425 | predicted protein [Populus trichocarpa] | 0.990 | 0.978 | 0.755 | 1e-170 | |
| 297799788 | 445 | ubiquitin thiolesterase [Arabidopsis lyr | 1.0 | 0.943 | 0.687 | 1e-166 | |
| 145341413 | 445 | ubiquitin-specific protease C19-related | 1.0 | 0.943 | 0.685 | 1e-166 | |
| 224118172 | 425 | predicted protein [Populus trichocarpa] | 0.990 | 0.978 | 0.752 | 1e-165 |
| >gi|255554737|ref|XP_002518406.1| conserved hypothetical protein [Ricinus communis] gi|223542251|gb|EEF43793.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/430 (79%), Positives = 381/430 (88%), Gaps = 10/430 (2%)
Query: 1 MTTRIPSHQLSSGLYVSGRPE-QLKERQPTMASRAVPYTGGDVKKSGELGKMFDIQV--- 56
M+TRI SHQL +GL VSGRP+ QLKE+ PTMASR+VPYTGGD+KKSGELGKMFDI V
Sbjct: 1 MSTRIQSHQLKNGLLVSGRPDHQLKEKPPTMASRSVPYTGGDIKKSGELGKMFDIPVLLD 60
Query: 57 --TDQANTKLPSRPSSSSQPNSGSVRSGSNSGPVKKTSGPLPLQPTGLITSGPIGSGPL- 113
+ K PSRPSSSSQ NSGSVRSG NSGP KK+SGP+PLQPTGLITSGP+GSGPL
Sbjct: 61 QPSPPPIPKQPSRPSSSSQHNSGSVRSGPNSGPFKKSSGPMPLQPTGLITSGPLGSGPLP 120
Query: 114 -SNRRSGQLDY--SGSGSGSVKAGYGSAVTSLGEDVKVGFRVSRAVAWVVMVVVAMGVMV 170
++RRSGQLD+ SG GS S KA YGSAVTS EDVKVGFRVSR V WVV+VV+AMG++V
Sbjct: 121 PAHRRSGQLDHTASGVGSASSKALYGSAVTSFTEDVKVGFRVSRPVFWVVLVVIAMGLLV 180
Query: 171 GAFLMVAVKKAVVLVAVAAVVGPLFIGMIWNCVWGRRGLLGFVKKYPDTELRGAIDGQYV 230
GAFLMVAVKKA++LVAV A++ P+ +G++WNCVWGRRGLLGFV++YPDTELRGAIDGQYV
Sbjct: 181 GAFLMVAVKKAIILVAVGAILVPVVVGLVWNCVWGRRGLLGFVRRYPDTELRGAIDGQYV 240
Query: 231 KVTGVVTCGSIPLESSYQRVPRCVYVSTELHEYKGCGGKPANPKHRCFSWGSRHLEKYVS 290
KVTGVVTCGSIPLE+SYQRV RCVYVSTEL+EY+G GGK A+ KHR FSWGSR+ EKYV+
Sbjct: 241 KVTGVVTCGSIPLETSYQRVSRCVYVSTELYEYRGWGGKSAHAKHRFFSWGSRYSEKYVA 300
Query: 291 DFYISDFQSGLRALVKAGYGAKVAPFVKPATVVNITKGNRDLSPSFLRWLADRNLSSDDR 350
DFYISDFQSGLRALVKAGYGAKVAPFVKP+TVV++ NRDLSPSFLRWLADR+LSSDDR
Sbjct: 301 DFYISDFQSGLRALVKAGYGAKVAPFVKPSTVVDVKNENRDLSPSFLRWLADRSLSSDDR 360
Query: 351 IMRLKEGYIKEGSTVSVMGVVRRHDNVLMIVPSTEPVSTGCQWSRCLLPTYVEGLILTCD 410
IMRLKEGYIKEGSTVSVMGVVRRHDNVLMIVP EPVSTGCQW +CLLPTYVEGL+LTCD
Sbjct: 361 IMRLKEGYIKEGSTVSVMGVVRRHDNVLMIVPPPEPVSTGCQWFQCLLPTYVEGLVLTCD 420
Query: 411 DNQDGDVVPV 420
D QD DVVPV
Sbjct: 421 DTQDADVVPV 430
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555714|ref|XP_003546175.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356532329|ref|XP_003534726.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449434004|ref|XP_004134786.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449530390|ref|XP_004172178.1| PREDICTED: uncharacterized membrane protein At1g16860-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357447785|ref|XP_003594168.1| Membrane protein, putative [Medicago truncatula] gi|355483216|gb|AES64419.1| Membrane protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|224116050|ref|XP_002317194.1| predicted protein [Populus trichocarpa] gi|222860259|gb|EEE97806.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297799788|ref|XP_002867778.1| ubiquitin thiolesterase [Arabidopsis lyrata subsp. lyrata] gi|297313614|gb|EFH44037.1| ubiquitin thiolesterase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|145341413|ref|NP_193960.2| ubiquitin-specific protease C19-related protein [Arabidopsis thaliana] gi|22655310|gb|AAM98245.1| unknown protein [Arabidopsis thaliana] gi|30387541|gb|AAP31936.1| At4g22290 [Arabidopsis thaliana] gi|332659188|gb|AEE84588.1| ubiquitin-specific protease C19-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|224118172|ref|XP_002331575.1| predicted protein [Populus trichocarpa] gi|222873799|gb|EEF10930.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 420 | ||||||
| TAIR|locus:2132075 | 445 | AT4G22290 "AT4G22290" [Arabido | 0.790 | 0.746 | 0.673 | 1.4e-119 | |
| TAIR|locus:2015646 | 474 | AT1G16860 [Arabidopsis thalian | 0.528 | 0.468 | 0.639 | 4.6e-101 | |
| TAIR|locus:2037533 | 468 | AT1G78880 "AT1G78880" [Arabido | 0.528 | 0.474 | 0.630 | 2e-98 |
| TAIR|locus:2132075 AT4G22290 "AT4G22290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 227/337 (67%), Positives = 258/337 (76%)
Query: 89 KKTSGPLP-LQPTGLITSGPIGS-GPL--SNRRSGQLDYSGSGSGSVKAGYGSAVTSLGE 144
KK SGPL LQPTGLITSG +GS GP+ +RRSGQLD+ S S K YGS+VTSL
Sbjct: 109 KKFSGPLSQLQPTGLITSGSLGSSGPILSGSRRSGQLDHQLSNLASSKPKYGSSVTSLNV 168
Query: 145 D-VKVGFRVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPLFIGMIWNCV 203
D V+VGF+V + P + ++WNCV
Sbjct: 169 DPVRVGFKVPKAMVWAVLIVAAMGLLVGAFLTVAVKKPVVIAAVLAAVCPAIVVLVWNCV 228
Query: 204 WGRRGLLGFVKKYPDTELRGAIDGQYVKVTGVVTCGSIPLESSYQRVPRCVYVSTELHEY 263
W R+GLL F+KKYPD ELRGAIDGQ+VKVTGVVTCGSIPLESS+QR PRCVYVSTEL+EY
Sbjct: 229 WRRKGLLSFIKKYPDAELRGAIDGQFVKVTGVVTCGSIPLESSFQRTPRCVYVSTELYEY 288
Query: 264 KGCGGKPANPKHRCFSWGSRHLEKYVSDFYISDFQSGLRALVKAGYGAKVAPFVKPATVV 323
KG GGK ANPKHRCFSWGSRH EKYVSDFYISDFQSGLRALVKAGYG+KV+PFVKPATV
Sbjct: 289 KGFGGKSANPKHRCFSWGSRHAEKYVSDFYISDFQSGLRALVKAGYGSKVSPFVKPATVA 348
Query: 324 NITKGNRDLSPSFLRWLADRNLSSDDRIMRLKEGYIKEGSTVSVMGVVRRHDNVLMIVPS 383
N+T N+DLSPSFL+WL+DRNLS+DDR+MRLKEGYIKEGSTVSVMG+VRRHDNVLMIVP
Sbjct: 349 NVTTQNKDLSPSFLKWLSDRNLSADDRVMRLKEGYIKEGSTVSVMGMVRRHDNVLMIVPP 408
Query: 384 TEPVSTGCQWSRCLLPTYVEGLILTCDDNQDGDVVPV 420
E VS+GC+W CL PTY +GLI+TCDDNQ+ DV+PV
Sbjct: 409 AEAVSSGCRWWHCLFPTYADGLIITCDDNQNADVIPV 445
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| TAIR|locus:2015646 AT1G16860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2037533 AT1G78880 "AT1G78880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00011719001 | SubName- Full=Chromosome undetermined scaffold_332, whole genome shotgun sequence; (432 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 420 | |||
| pfam06070 | 777 | pfam06070, Herpes_UL32, Herpesvirus large structur | 6e-04 |
| >gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32 | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 25/128 (19%), Positives = 37/128 (28%), Gaps = 6/128 (4%)
Query: 20 PEQLKERQPTMASRAVPYTGGDVKKSGELGKMFDIQ-VTDQANTKLPSRPSSSSQPNSGS 78
P + + S A P T G + LGK ANT + S
Sbjct: 542 PPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSS 601
Query: 79 VRSGSNSGPVKKTSGPLPLQPTGLITSGPIGSGPLSNRRSGQLDYSGSGSGSVKAGYGSA 138
V+ ++ T L+P L P S + R +G SG G
Sbjct: 602 VKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGL-----GGF 656
Query: 139 VTSLGEDV 146
+ +
Sbjct: 657 TSPISLLE 664
|
The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 420 | |||
| PF12483 | 160 | GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 Thi | 97.86 | |
| PF13567 | 176 | DUF4131: Domain of unknown function (DUF4131) | 91.73 | |
| PF13829 | 224 | DUF4191: Domain of unknown function (DUF4191) | 90.58 |
| >PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=64.76 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=68.6
Q ss_pred ccccceeeeeEeeceEEEecCCceeEEE-EecCCCeeeeeeeeceEEeecCCCCCCCHHHHHHHhhcC-CCCccceeEEe
Q 014676 278 FSWGSRHLEKYVSDFYISDFQSGLRALV-KAGYGAKVAPFVKPATVVNITKGNRDLSPSFLRWLADRN-LSSDDRIMRLK 355 (420)
Q Consensus 278 f~W~l~~~E~~~~DFYIsD~~sG~RAlV-KaG~G~kVtp~V~e~~vv~~~~~~~dlS~~f~~WL~erN-LSsd~r~mRlk 355 (420)
-.|++.+..+..+.||+.| ..-|.+| ....|+.+.--.+-+..... .......+..|+..+- +. .+-.||+
T Consensus 17 ~~~~~v~~~~~~vPF~L~D--~tg~v~V~~~p~~a~l~l~~v~~~f~p~---~~~~~~~~~~~~~~~~~~~--~~G~r~~ 89 (160)
T PF12483_consen 17 SSWRTVSSGTSEVPFYLED--GTGRVRVVDDPEGAELDLETVYDRFEPS---PSSPPDGLFGFFSGERELE--PKGYRYT 89 (160)
T ss_pred ccEEEEEcceeEcCEEEEC--CceEEEEecCcccCccceeeEEEEeEEC---CCCccceeeeeeccceecc--ccccEEE
Confidence 3499999999999999999 4455555 56667665432333332111 1133444444433322 11 3347999
Q ss_pred cceeeeCCEEEEEEEE-EeeCceeEEeCCCCc
Q 014676 356 EGYIKEGSTVSVMGVV-RRHDNVLMIVPSTEP 386 (420)
Q Consensus 356 EGyIkEGstvSVmGvv-kr~~~~~mi~pP~e~ 386 (420)
|-.|.+|++|.|+|.+ ..+|..++|-+|.+.
T Consensus 90 E~~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g 121 (160)
T PF12483_consen 90 EEILPVGTPLTVVGELVRDGDGNLVIQPPKDG 121 (160)
T ss_pred EEEcCCCCEEEEEEEEEEcCCCcEEEeCCCCC
Confidence 9999999999999999 555678999999986
|
There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity |
| >PF13567 DUF4131: Domain of unknown function (DUF4131) | Back alignment and domain information |
|---|
| >PF13829 DUF4191: Domain of unknown function (DUF4191) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00