Citrus Sinensis ID: 014705

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEDYQLHKFPDP

cccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHccccccc

cccccccccccEEEEcccccHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHcccccc

msskekptlggtrikprkrniaapldpaafSDAVVQIYLDNAGDLELIAKCIessdlnfsrygdTFFEVVFtggrtqpgttkpdegerhsysiidcepqreailpSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSqklsglppetvfqpllkdnlvgkGLVLSFITDFFKEYLVDNSLDDLIAILKRGkmednlldffpsskrsaegfsehftkegliplveyneKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVkdaklpdieVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSlydqdvlaeDTILYWFrkgtnpkgrQTFVKALEPFVKWLEEAEEedyqlhkfpdp

msskekptlggtrikprkrniaAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFtggrtqpgttkpdegerHSYSiidcepqreaILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFsehftkegliplveyNEKKIFEVKLKDMKSTLTTqiaeetemseviesvkqrvkdaklpdiEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFrkgtnpkgrQTFVKALEPFVKWLEEAeeedyqlhkfpdp

MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKnqqqnanaaLRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEDYQLHKFPDP

************************LDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGG****************YSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFF*********FSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTT**************VKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLE***************

************************LDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTT*PDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLL****************FT**GLIP****************************TEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYW***************ALEPFVKWLEEAEE***********

***********TRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQP**********HSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAE************

*******TLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEED*QLHKF***

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		420	2.2.26 [Sep-21-2011]
Q5ZL42		414	Basic leucine zipper and	yes	no	0.966	0.980	0.315	6e-63
Q2L4X1		419	Basic leucine zipper and	N/A	no	0.959	0.961	0.310	4e-61
Q91VK1		419	Basic leucine zipper and	yes	no	0.959	0.961	0.310	4e-61
Q9WTT7		419	Basic leucine zipper and	yes	no	0.959	0.961	0.310	5e-61
Q4R6R4		419	Basic leucine zipper and	N/A	no	0.959	0.961	0.310	5e-61
Q9Y6E2		419	Basic leucine zipper and	yes	no	0.959	0.961	0.310	5e-61
Q6PD83		419	Basic leucine zipper and	yes	no	0.952	0.954	0.302	2e-59
Q6P7P5		419	Basic leucine zipper and	no	no	0.947	0.949	0.304	7e-59
Q9CQC6		419	Basic leucine zipper and	no	no	0.947	0.949	0.304	7e-59
Q7L1Q6		419	Basic leucine zipper and	no	no	0.947	0.949	0.304	7e-59

>sp\|Q5ZL42\|BZW2_CHICK Basic leucine zipper and W2 domain-containing protein 2 OS=Gallus gallus GN=BZW2 PE=2 SV=1	Back alignment and function desciption

 Score =  241 bits (616), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 131/415 (31%), Positives = 234/415 (56%), Gaps = 9/415 (2%)

Query: 1   MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIES--SDLN 58
           M+  +KP L G R K RKR+     +P  F D +VQ   +   DLE IAK ++S  S L+
Sbjct: 1   MNKNQKPVLTGQRFKTRKRDEKEKFEPTVFRDTIVQGLNEAGSDLEAIAKFLDSAGSRLD 60

Query: 59  FSRYGDTFFEVVFTGGRTQPGTTKPDEGERHS---YSIIDCEPQREAILPSVIYIQKILR 115
           + RY DT F+++  G    PG T+ D+ ++     + +   E   +AI        K++R
Sbjct: 61  YRRYADTLFDILVAGSMLAPGGTRIDDNDKTKMTRHCVFFAEEDHDAIRNYAQVFNKLIR 120

Query: 116 RRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNL 175
           R  +L K  E+  ++ +  L+ F E E+ KLA+ + +  +   +G  P T+   L  DN+
Sbjct: 121 RYKYLEKAFEDEIKKLLLFLKAFSETEQTKLAMLSGILLA---NGTLPATILTSLFTDNI 177

Query: 176 VGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKE 235
           V +G+  SF    FK ++ +   + + + L++  ++  LL+ FP+++++ + F+++FT+ 
Sbjct: 178 VKEGIAASFAVKLFKAWMAEKDANSVTSALRKANLDKRLLELFPANRQNVDHFAKYFTEA 237

Query: 236 GLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRIL 295
           GL  L ++   +      K+++  L  ++++E  + E++  VK+ +K  +LP+  V+ +L
Sbjct: 238 GLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEMVLYVKEEMKRNELPEPAVIGLL 297

Query: 296 WDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKL 355
           W  +M+AV+W+ K ++  A  AL+ +K +A LL  F T  + EL L+ KVQ  CY++   
Sbjct: 298 WTCVMNAVEWN-KKEELVAEQALKHLKQYAPLLAVFSTQGQSELILLQKVQEYCYDNIHF 356

Query: 356 MKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEE 410
           MK F +IV   Y  DVL+E+ IL W+++    KG+  F+  ++ FV+WL+ AEEE
Sbjct: 357 MKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEE 411

May be involved in neuronal differentiation.
Gallus gallus (taxid: 9031)

>sp\|Q2L4X1\|BZW2_MUSMM Basic leucine zipper and W2 domain-containing protein 2 OS=Mus musculus molossinus GN=Bzw2 PE=2 SV=1	Back alignment and function description

>sp\|Q91VK1\|BZW2_MOUSE Basic leucine zipper and W2 domain-containing protein 2 OS=Mus musculus GN=Bzw2 PE=1 SV=1	Back alignment and function description

>sp\|Q9WTT7\|BZW2_RAT Basic leucine zipper and W2 domain-containing protein 2 OS=Rattus norvegicus GN=Bzw2 PE=2 SV=1	Back alignment and function description

>sp\|Q4R6R4\|BZW2_MACFA Basic leucine zipper and W2 domain-containing protein 2 OS=Macaca fascicularis GN=BZW2 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y6E2\|BZW2_HUMAN Basic leucine zipper and W2 domain-containing protein 2 OS=Homo sapiens GN=BZW2 PE=1 SV=1	Back alignment and function description

>sp\|Q6PD83\|BZW1A_DANRE Basic leucine zipper and W2 domain-containing protein 1-A OS=Danio rerio GN=bzw1a PE=2 SV=1	Back alignment and function description

>sp\|Q6P7P5\|BZW1_RAT Basic leucine zipper and W2 domain-containing protein 1 OS=Rattus norvegicus GN=Bzw1 PE=2 SV=1	Back alignment and function description

>sp\|Q9CQC6\|BZW1_MOUSE Basic leucine zipper and W2 domain-containing protein 1 OS=Mus musculus GN=Bzw1 PE=1 SV=1	Back alignment and function description

>sp\|Q7L1Q6\|BZW1_HUMAN Basic leucine zipper and W2 domain-containing protein 1 OS=Homo sapiens GN=BZW1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		420
224146166		411	predicted protein [Populus trichocarpa]	0.961	0.982	0.918	0.0
224128908		411	predicted protein [Populus trichocarpa]	0.961	0.982	0.920	0.0
255547564		411	translation initiation factor, putative	0.961	0.982	0.915	0.0
192912980		411	translation initiation factor [Elaeis gu	0.978	1.0	0.892	0.0
359476759		411	PREDICTED: basic leucine zipper and W2 d	0.961	0.982	0.905	0.0
297735255		429	unnamed protein product [Vitis vinifera]	0.961	0.941	0.905	0.0
449442269		411	PREDICTED: basic leucine zipper and W2 d	0.961	0.982	0.883	0.0
356531892		411	PREDICTED: basic leucine zipper and W2 d	0.961	0.982	0.891	0.0
358248062		411	uncharacterized protein LOC100789838 [Gl	0.961	0.982	0.888	0.0
357507787		411	Basic leucine zipper and W2 domain-conta	0.961	0.982	0.881	0.0

>gi\|224146166\|ref\|XP_002325904.1\| predicted protein [Populus trichocarpa] gi\|118482262\|gb\|ABK93058.1\| unknown [Populus trichocarpa] gi\|222862779\|gb\|EEF00286.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/404 (91%), Positives = 392/404 (97%)

Query: 1   MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFS 60
           MSSKE+PTLGGTRIK RKRNIAAPLDPAAF+DAVVQIYLDNAGDLEL+AK IES+DLNFS
Sbjct: 1   MSSKERPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLDNAGDLELVAKSIESADLNFS 60

Query: 61  RYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFL 120
           RYGDTFFEVVFTGGRTQPGTTKPDEGERH YSIIDCEP RE ILPSVIY QKILRR+PFL
Sbjct: 61  RYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIDCEPTREIILPSVIYTQKILRRKPFL 120

Query: 121 IKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGL 180
           IKNLENV RRF+QSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV KG+
Sbjct: 121 IKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGI 180

Query: 181 VLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPL 240
           VLSFITDFFKEYLVDNSLDDLI+ILKRGKME+NL+DFFPS+KRSAEGFSEHF+KEGLIPL
Sbjct: 181 VLSFITDFFKEYLVDNSLDDLISILKRGKMEENLMDFFPSAKRSAEGFSEHFSKEGLIPL 240

Query: 241 VEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILM 300
           VEYNEKKIFEVKLK+MKS LTTQIAEE +MSEVI++VKQRVKDAKLPDIE+VRILWD+LM
Sbjct: 241 VEYNEKKIFEVKLKEMKSALTTQIAEEADMSEVIDTVKQRVKDAKLPDIEIVRILWDVLM 300

Query: 301 DAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFP 360
           DAVQWSGKNQQQNAN+ALRQVKTWAQLLNTFCTN KLELEL+YKVQMQCYEDAKLMKLFP
Sbjct: 301 DAVQWSGKNQQQNANSALRQVKTWAQLLNTFCTNGKLELELLYKVQMQCYEDAKLMKLFP 360

Query: 361 EIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWL 404
           EIVRSLYDQDVLAEDTIL+WFRKGTNPKGRQTFVKALEPFV WL
Sbjct: 361 EIVRSLYDQDVLAEDTILHWFRKGTNPKGRQTFVKALEPFVNWL 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224128908\|ref\|XP_002328996.1\| predicted protein [Populus trichocarpa] gi\|118485433\|gb\|ABK94573.1\| unknown [Populus trichocarpa] gi\|222839230\|gb\|EEE77581.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255547564\|ref\|XP_002514839.1\| translation initiation factor, putative [Ricinus communis] gi\|223545890\|gb\|EEF47393.1\| translation initiation factor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|192912980\|gb\|ACF06598.1\| translation initiation factor [Elaeis guineensis]	Back alignment and taxonomy information

>gi\|359476759\|ref\|XP_002270681.2\| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297735255\|emb\|CBI17617.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449442269\|ref\|XP_004138904.1\| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Cucumis sativus] gi\|449477782\|ref\|XP_004155121.1\| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356531892\|ref\|XP_003534510.1\| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|358248062\|ref\|NP_001240059.1\| uncharacterized protein LOC100789838 [Glycine max] gi\|255641368\|gb\|ACU20961.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|357507787\|ref\|XP_003624182.1\| Basic leucine zipper and W2 domain-containing protein [Medicago truncatula] gi\|355499197\|gb\|AES80400.1\| Basic leucine zipper and W2 domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		420
TAIR\|locus:2183602		411	AT5G36230 "AT5G36230" [Arabido	0.978	1.0	0.817	9.7e-183
TAIR\|locus:2200400		411	AT1G65220 "AT1G65220" [Arabido	0.978	1.0	0.781	2.3e-174
UNIPROTKB\|F1NCN8		421	BZW2 "Basic leucine zipper and	0.964	0.961	0.317	3.9e-60
UNIPROTKB\|F1NM03		419	BZW2 "Basic leucine zipper and	0.964	0.966	0.317	3.9e-60
UNIPROTKB\|Q5ZL42		414	BZW2 "Basic leucine zipper and	0.964	0.978	0.317	3.9e-60
UNIPROTKB\|A6H7D7		419	BZW2 "BZW2 protein" [Bos tauru	0.964	0.966	0.319	6.4e-60
UNIPROTKB\|F1PUT4		419	BZW2 "Uncharacterized protein"	0.964	0.966	0.317	2.2e-59
UNIPROTKB\|Q9Y6E2		419	BZW2 "Basic leucine zipper and	0.964	0.966	0.317	2.2e-59
UNIPROTKB\|Q2L4X1		419	Bzw2 "Basic leucine zipper and	0.964	0.966	0.317	2.2e-59
MGI\|MGI:1914162		419	Bzw2 "basic leucine zipper and	0.964	0.966	0.317	2.2e-59

TAIR\|locus:2183602 AT5G36230 "AT5G36230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1773 (629.2 bits), Expect = 9.7e-183, P = 9.7e-183
 Identities = 336/411 (81%), Positives = 376/411 (91%)

Query:     1 MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCIESSDLNFS 60
             MSSKEKPTLGGTRIK RKRNIAAPLDPAAFSDAVVQIY DNAGDLEL+AK IESSDLNF+
Sbjct:     1 MSSKEKPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYHDNAGDLELVAKSIESSDLNFT 60

Query:    61 RYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFL 120
             RYGD FFEV+F GGRTQPGT K DEGERH+YS+IDCEP+REAILPSV+YIQKILRR+PFL
Sbjct:    61 RYGDIFFEVIFIGGRTQPGTVKSDEGERHTYSVIDCEPKREAILPSVVYIQKILRRKPFL 120

Query:   121 IKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGL 180
             IKNLENVTRRF+QSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV KG+
Sbjct:   121 IKNLENVTRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGI 180

Query:   181 VLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPL 240
             VLSF+TDFFKEYLV+NSL+DLI+IL+RGKMEDNL+DF P  +RSAE F+EHFT EGL  L
Sbjct:   181 VLSFVTDFFKEYLVENSLEDLISILRRGKMEDNLMDFLPPVRRSAESFAEHFTNEGLTDL 240

Query:   241 VEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILM 300
             VEY+ KK+FEVKL+++K+ LT+++ EE+ + EVIESVKQ++KDAKLPDIEVVR++WD LM
Sbjct:   241 VEYHSKKMFEVKLREIKTVLTSKVTEESNVDEVIESVKQQIKDAKLPDIEVVRVVWDGLM 300

Query:   301 DAVQWSGKXXXXXXXXXLRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFP 360
             DAVQWSGK         LRQVKTWA LLNTFCT+ KLELELMYKVQMQCYEDAKLMK+FP
Sbjct:   301 DAVQWSGKNQQQNANSVLRQVKTWAPLLNTFCTSGKLELELMYKVQMQCYEDAKLMKVFP 360

Query:   361 EIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEED 411
             E+VRSLY+ DVLAEDTIL+WFRKGTN KGRQTFVK+LEPFV WLEEAEEE+
Sbjct:   361 EVVRSLYELDVLAEDTILHWFRKGTNSKGRQTFVKSLEPFVNWLEEAEEEE 411

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR\|locus:2200400 AT1G65220 "AT1G65220" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NCN8 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NM03 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZL42 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A6H7D7 BZW2 "BZW2 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PUT4 BZW2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y6E2 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2L4X1 Bzw2 "Basic leucine zipper and W2 domain-containing protein 2" [Mus musculus molossinus (taxid:57486)]	Back alignment and assigned GO terms

MGI\|MGI:1914162 Bzw2 "basic leucine zipper and W2 domains 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZL42	BZW2_CHICK	No assigned EC number	0.3156	0.9666	0.9806	yes	no
Q9WTT7	BZW2_RAT	No assigned EC number	0.3106	0.9595	0.9618	yes	no
Q6PD83	BZW1A_DANRE	No assigned EC number	0.3029	0.9523	0.9546	yes	no
Q91VK1	BZW2_MOUSE	No assigned EC number	0.3106	0.9595	0.9618	yes	no
Q9VNE2	EXBA_DROME	No assigned EC number	0.3219	0.9547	0.9502	yes	no
Q9Y6E2	BZW2_HUMAN	No assigned EC number	0.3106	0.9595	0.9618	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_kg.C_LG_XIX0005	SubName- Full=Putative uncharacterized protein; (412 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		420
cd11560		194	cd11560, W2_eIF5C_like, C-terminal W2 domain of th	5e-94
smart00515		83	smart00515, eIF5C, Domain at the C-termini of GCD6	3e-25
pfam02020		75	pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon	4e-17
cd11558		169	cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of	1e-14
cd11561		157	cd11561, W2_eIF5, C-terminal W2 domain of eukaryot	3e-14
cd11473		135	cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/	1e-10

>gnl\|CDD\|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins	Back alignment and domain information

 Score =  280 bits (718), Expect = 5e-94
 Identities = 99/195 (50%), Positives = 139/195 (71%), Gaps = 1/195 (0%)

Query: 216 DFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIE 275
           +FFP +KR+ E F+EHF +EGL  LVE+  K+  +   K+++  L   IAEE  + E+I 
Sbjct: 1   EFFPPNKRTEEHFAEHFKEEGLDELVEFYRKQASQEIKKELQQELKEMIAEEEPVKEIIA 60

Query: 276 SVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNA 335
           +VK+++K + LP+ EVV +LW  LMDAV+WS K + Q A  ALR +K +A LL  FCT A
Sbjct: 61  AVKEQMKKSSLPEHEVVGLLWTALMDAVEWSKK-EDQIAEQALRHLKKYAPLLAAFCTTA 119

Query: 336 KLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVK 395
           + EL L+ K+Q  CYE+ K MK+F +IV+ LY  DVL+ED IL W++KG +PKG+Q F+K
Sbjct: 120 RAELALLNKIQEYCYENMKFMKVFQKIVKLLYKADVLSEDAILKWYKKGHSPKGKQVFLK 179

Query: 396 ALEPFVKWLEEAEEE 410
            +EPFV+WL+EAEEE
Sbjct: 180 QMEPFVEWLQEAEEE 194

eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 194

>gnl\|CDD\|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5	Back alignment and domain information

>gnl\|CDD\|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon	Back alignment and domain information

>gnl\|CDD\|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon	Back alignment and domain information

>gnl\|CDD\|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation initiation factor 5	Back alignment and domain information

>gnl\|CDD\|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		420
KOG2297		412	consensus Predicted translation factor, contains W	100.0
KOG1461		673	consensus Translation initiation factor 2B, epsilo	99.92
PF02020		84	W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003	99.88
smart00515		83	eIF5C Domain at the C-termini of GCD6, eIF-2B epsi	99.86
KOG2767		400	consensus Translation initiation factor 5 (eIF-5)	99.67
PF09090		253	MIF4G_like_2: MIF4G like; InterPro: IPR015174 This	97.25
KOG1104		759	consensus Nuclear cap-binding complex, subunit NCB	94.79
KOG2140		739	consensus Uncharacterized conserved protein [Gener	94.13
KOG0401		970	consensus Translation initiation factor 4F, riboso	85.5
smart00544		113	MA3 Domain in DAP-5, eIF4G, MA-3 and other protein	80.56

>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=8.4e-129  Score=934.19  Aligned_cols=408  Identities=49%  Similarity=0.832  Sum_probs=401.9

Q ss_pred             CCCCCCCCCCCcccccccccccCCCCchhhHHHHHHHhhcCCCCHHHHHHHh--hcCCccchhhhhhhHHhhhhcCCCCC
Q 014705            1 MSSKEKPTLGGTRIKPRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKCI--ESSDLNFSRYGDTFFEVVFTGGRTQP   78 (420)
Q Consensus         1 ~~~~~kp~l~g~riktrkr~~~~~~dp~~frd~~~~~~~~~~~dle~~~~~l--~g~~ldy~ry~~~lf~i~~~Gg~l~p   78 (420)
                      |++.+||+|+|+||||||||++++|||++|||++||||++++||||+|||+|  .|++||||||||+||||+|+||+++|
T Consensus         2 ~~k~~kp~lsg~riktrKr~~~e~~dp~~f~da~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~p   81 (412)
T KOG2297|consen    2 SQKTEKPVLSGQRIKTRKRDEAEKLDPTAFRDAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQP   81 (412)
T ss_pred             CccccCCCCCCccchhhhccccccCCCccHHHHHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCC
Confidence            6899999999999999999999999999999999999999999999999999  68899999999999999999999999


Q ss_pred             CCcCcCCCC-CCCceeeccCcchhhhhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHhhh
Q 014705           79 GTTKPDEGE-RHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQK  157 (420)
Q Consensus        79 gg~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f~~~~r~klA~~~a~~~~~~  157 (420)
                      ||+.+|||+ +++||||+|++++|+|++|+|||||||||||||+|+|||+|+|+|+||++|++++|+|||++||++++  
T Consensus        82 g~~~sddge~~t~~cvfda~e~~E~i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~--  159 (412)
T KOG2297|consen   82 GGVKSDDGERHTSYCVFDAEEKREAIRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLS--  159 (412)
T ss_pred             CCccccccCccCceeEeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh--
Confidence            999999997 56799999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cCCCCCccchhhhhhccccCCCchHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhhCCCCCCChhHHHHHHHhcCC
Q 014705          158 LSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGL  237 (420)
Q Consensus       158 ~~g~~~~~~l~~l~~~~Lv~~G~al~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P~~kr~~e~f~~~f~~~~L  237 (420)
                       +|++|+++|++|++||||++|++++|++.+|+.|+.|+|++.|+++||+++|++||++|||||+||.++|.+||.++||
T Consensus       160 -nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL  238 (412)
T KOG2297|consen  160 -NGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGL  238 (412)
T ss_pred             -CCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccchhhhhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHhhhcccchhhhHHHH
Q 014705          238 IPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAA  317 (420)
Q Consensus       238 ~~l~~~~~~~~~~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v~~s~k~~~~~~~~~  317 (420)
                      .++++|++.|+++..++|+++.|++.+.++.|.++|+..||..+..+|+|+++||++||+++|+.++|+++ ++++++++
T Consensus       239 ~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKk-eelva~qa  317 (412)
T KOG2297|consen  239 KELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKK-EELVAEQA  317 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchH-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999955 88999999


Q ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhhchHHHhHHHHHHHHhhhccccchhhHHHhhhcCCCcchHHHHHHhH
Q 014705          318 LRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKAL  397 (420)
Q Consensus       318 ~~~lk~~~pLL~~f~~~~~~Ql~lL~ALQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIl~W~~~~~~~~Gk~~~lk~~  397 (420)
                      ++++++|+|||.+||+++++++.+|+.+|.|||+|.++|+.|+.|+..||..||++||+|++||.+++.++||++|++++
T Consensus       318 lrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqm  397 (412)
T KOG2297|consen  318 LRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQM  397 (412)
T ss_pred             HHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcccccCcc
Q 014705          398 EPFVKWLEEAEEEDY  412 (420)
Q Consensus       398 ~~FV~WLeEAEEEsd  412 (420)
                      ++||+||++|||||+
T Consensus       398 kkFVeWL~~AEEEsE  412 (412)
T KOG2297|consen  398 KKFVEWLQNAEEESE  412 (412)
T ss_pred             HHHHHHHHhhhhccC
Confidence            999999999999985

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []

Back alignment and domain information

>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5	Back alignment and domain information

>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain	Back alignment and domain information

>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]	Back alignment and domain information

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		420
2iu1_A		208	Crystal Structure Of Eif5 C-Terminal Domain Length		2e-06

>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain Length = 208

Back alignment and structure

Iteration: 1

Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 6/94 (6%) Query: 320 QVKTWAQLLNTFC-TNAKLELELMYKVQ-MQCYEDAKLMKLFPEIVRSLYDQDVLAEDTI 377 Q+K + + FC N K + L++ ++ + A+L+ P I++ +YD D+L E+ I Sbjct: 61 QIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVI 120 Query: 378 LYWFRKGTNPKGRQTFVKAL----EPFVKWLEEA 407 + W K + + K + EPF+KWL+EA Sbjct: 121 ISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEA 154

PyMOL of 2iu1

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		420
1ug3_A		339	EIF4GI, eukaryotic protein synthesis initiation fa	8e-34
3jui_A		182	Translation initiation factor EIF-2B subunit EPSI;	3e-32
1paq_A		189	Translation initiation factor EIF-2B epsilon subun	1e-29
3d3m_A		168	Eukaryotic translation initiation factor 4 gamma 2	2e-29
3l6a_A		364	Eukaryotic translation initiation factor 4 gamma;	3e-26
2iu1_A		208	EIF5, eukaryotic translation initiation factor 5;	1e-22
2ful_A		177	EIF-5, eukaryotic translation initiation factor 5;	6e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339	Back alignment and structure

 Score =  128 bits (322), Expect = 8e-34
 Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 9/278 (3%)

Query: 110 IQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQP 169
           + ++L                 ++  E  E +          L       G  P      
Sbjct: 69  LHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFR 128

Query: 170 LLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFS 229
            +   L   G   S + +             +  + +   +  +  +F P  +      +
Sbjct: 129 EITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWREAGL--SWKEFLPEGQDIGAFVA 186

Query: 230 EHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDI 289
           E   +  L    E   +    +  +++   L   + E +    V + ++  + + ++   
Sbjct: 187 EQKVEYTLGEESEAPGQ--RALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSN 244

Query: 290 EVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQC 349
            +VR L    M AV +S    +      +  +K  A+LL  +  + + EL+ +Y +Q   
Sbjct: 245 TLVRAL----MTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCDEQKELQALYALQALV 300

Query: 350 YEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNP 387
               +   L      +LYD+DV+ ED    W     +P
Sbjct: 301 VTLEQPPNLLRMFFDALYDEDVVKEDAFYSW-ESSKDP 337

PyMOL of 1ug3

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182	Back alignment and structure

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189	Back alignment and structure

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168	Back alignment and structure

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364	Back alignment and structure

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208	Back alignment and structure

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Length = 177	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		420
3l6a_A		364	Eukaryotic translation initiation factor 4 gamma;	100.0
1ug3_A		339	EIF4GI, eukaryotic protein synthesis initiation fa	100.0
1paq_A		189	Translation initiation factor EIF-2B epsilon subun	100.0
3jui_A		182	Translation initiation factor EIF-2B subunit EPSI;	100.0
3d3m_A		168	Eukaryotic translation initiation factor 4 gamma 2	99.97
2ful_A		177	EIF-5, eukaryotic translation initiation factor 5;	99.95
2iu1_A		208	EIF5, eukaryotic translation initiation factor 5;	99.91
1h2v_C		771	80 kDa nuclear CAP binding protein; CAP-binding-co	98.3
2zu6_B		307	Programmed cell death protein 4; protein-protein c	87.9
2rg8_A		165	Programmed cell death protein 4; MA3 domain, heat	85.84

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=4.6e-45  Score=369.72  Aligned_cols=248  Identities=16%  Similarity=0.287  Sum_probs=219.0

Q ss_pred             hhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccCCCchHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhhCC
Q 014705          140 ENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFP  219 (420)
Q Consensus       140 ~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G~al~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P  219 (420)
                      |.--..||.++|++++   +|.+|++.+...     ++.|.+++|++++|+.+++++|.++++++|++||++  |++|||
T Consensus       104 P~a~~~la~f~ar~i~---~~~l~~~~l~~~-----l~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~~sgl~--l~~FlP  173 (364)
T 3l6a_A          104 PLVKSYLAQFAARAII---SELVSISELAQP-----LESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVN--MQKMLP  173 (364)
T ss_dssp             TTHHHHHHHHHHHHHH---TTSSCHHHHHHH-----HGGGTTTTHHHHHHHHHHHHSCHHHHHHHHHHHTCC--SGGGSC
T ss_pred             ccHHHHHHHHHHHHHH---cCCCCHHHHHHH-----hcccchHHHHHHHHHHHHHhcCHHHHHHHHHHcCCC--HHHhCC
Confidence            4457899999999999   999999999864     456999999999999999999999999999999998  999999


Q ss_pred             CCCCChhHHHHHHHhcCCCccccchhhhhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHH
Q 014705          220 SSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDIL  299 (420)
Q Consensus       220 ~~kr~~e~f~~~f~~~~L~~l~~~~~~~~~~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~al  299 (420)
                      +++|+.++|.++|+++||++++++.          +++++|.++++++.++++|+.||+++..++++++++||+++|+||
T Consensus       174 e~~~~~~~~~e~~~~~~L~~l~~~~----------~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v  243 (364)
T 3l6a_A          174 EIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSF  243 (364)
T ss_dssp             GGGCSHHHHHHHHHHHTCGGGCHHH----------HHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHhCCCcccCCHH----------HHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHH
Confidence            9999999999999999999998743          899999999999999999999999999999999999999999999


Q ss_pred             HHHhh--hcc-c--------chhhhHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHhhchHHHhHHHHHHHHhh
Q 014705          300 MDAVQ--WSG-K--------NQQQNANAALRQVKTWAQLLNTFCTNA-KLELELMYKVQMQCYEDAKLMKLFPEIVRSLY  367 (420)
Q Consensus       300 m~~v~--~s~-k--------~~~~~~~~~~~~lk~~~pLL~~f~~~~-~~Ql~lL~ALQ~~c~e~~~~~k~f~~IL~~LY  367 (420)
                      |+++.  ++. +        +.........+.|++|+|+|++|+++. +.|+++|++||.+|++.......++.|++.||
T Consensus       244 ~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~~il~~LY  323 (364)
T 3l6a_A          244 LQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFY  323 (364)
T ss_dssp             HHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            99984  321 0        001112244578999999999999987 56999999999999974333456799999999


Q ss_pred             hccccchhhHHHhhhcCCCc-chHHHHHHhHHHHHHHHccc
Q 014705          368 DQDVLAEDTILYWFRKGTNP-KGRQTFVKALEPFVKWLEEA  407 (420)
Q Consensus       368 d~DVlsEeaIl~W~~~~~~~-~Gk~~~lk~~~~FV~WLeEA  407 (420)
                      |.|||+||+|++||++.++. .|+++++++++|||+||+||
T Consensus       324 d~DileEe~il~W~~~~~~~~~~k~~~~~~~~~Fi~WL~eA  364 (364)
T 3l6a_A          324 DMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA  364 (364)
T ss_dssp             HTTSSCHHHHHHHHHCCCCSSTTHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhhhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhcC
Confidence            99999999999999987653 48999999999999999997

PyMOL of 3l6a

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14	Back alignment and structure

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14	Back alignment and structure

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0	Back alignment and structure

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}	Back alignment and structure

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}	Back alignment and structure

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}	Back alignment and structure

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*	Back alignment and structure

>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		420
d1paqa_		161	a.118.1.14 (A:) Translation initiation factor eIF-	9e-28
d1ug3a2		127	a.118.1.14 (A:1438-1564) Eukaryotic initiation fac	1e-23

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (264), Expect = 9e-28
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 3/158 (1%)

Query: 254 KDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQN 313
           K+  +T+   +    ++   +  +        +   EV       L+  V      Q   
Sbjct: 4   KEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLG 63

Query: 314 ANAALRQV-KTWAQLLNTFCTNAKLELELMYKVQMQCYED--AKLMKLFPEIVRSLYDQD 370
              A+ +V   W  L      + +  ++LM  +  +  E    K   +    + SLYD D
Sbjct: 64  PKDAVVKVFNQWGLLFKRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDND 123

Query: 371 VLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAE 408
           ++ ED I  W+   +         K    +V+WL+ A+
Sbjct: 124 IIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEWLQNAD 161

PyMOL of d1paqa_

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		420
d1paqa_		161	Translation initiation factor eIF-2b epsilon {Bake	100.0
d1ug3a2		127	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.91
d1ug3a1		193	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.08
d1h2vc3		310	CBP80, 80KDa nuclear cap-binding protein {Human (H	97.32

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-34  Score=255.04  Aligned_cols=157  Identities=18%  Similarity=0.241  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHhhhcccchh-hhHHHHHHHHHHHHHHHHH
Q 014705          252 KLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQ-QNANAALRQVKTWAQLLNT  330 (420)
Q Consensus       252 ~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v~~s~k~~~-~~~~~~~~~lk~~~pLL~~  330 (420)
                      |++|++.+|.|++++|++++++++|||++++++|+|+++|+++++.|+|+.+.+...++. ...+...+.|++|+|+|++
T Consensus         2 F~~Ev~~sl~r~~ee~~~~dn~iLElnslr~a~N~~~~dv~~av~~All~~i~~~~~~~~~~~~~~~~~~l~k~~~ll~~   81 (161)
T d1paqa_           2 FEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKR   81 (161)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGGG
T ss_pred             hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999999998865433222 3344677889999999999


Q ss_pred             HhcChHHHHHHHHHHHHHHhh--chHHHhHHHHHHHHhhhccccchhhHHHhhhcCCCcchHHHHHHhHHHHHHHHcccc
Q 014705          331 FCTNAKLELELMYKVQMQCYE--DAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAE  408 (420)
Q Consensus       331 f~~~~~~Ql~lL~ALQ~~c~e--~~~~~k~f~~IL~~LYd~DVlsEeaIl~W~~~~~~~~Gk~~~lk~~~~FV~WLeEAE  408 (420)
                      |+.+.+.|+++|+++|.+|++  ++.++++|+.|++.|||.|||+||+|++||+++++..|+++++++++|||+||++||
T Consensus        82 ~~~~~~~q~~~L~~lq~~c~~~~~~~~~~~~~~il~~lY~~dii~Ed~i~~W~~~~~~~~~~~~~~~~~~~fv~WL~~ae  161 (161)
T d1paqa_          82 QAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEWLQNAD  161 (161)
T ss_dssp             TCCSHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGGHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCcHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHhhchhcHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999985  578889999999999999999999999999998888888999999999999999997

PyMOL of d1paqa_

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure