Citrus Sinensis ID: 014711

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccEEEccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHcccccccEEEEEcccEEHHHHcccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHccccccEEEEEEccccccccccccccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccHHHHHHHHcccccEEEHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccHHHHHHHHHHHHHHHcEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccEEEEcccEEEEccccHccccEccccccccccccccccHHHHHHHHHHHHHccEEEEccccccEcHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHccccccEEEEcccccHHHHHHcccccccEHEcccccccEEEccHccccccccEEEEEccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHEEccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEHcHHHHHHHHHHHHHHHHccccEEEEccccccccccccHHccccccccccHHHHHHccccccEEEEEccccccc
Coil and Loop (DISEMBL)
makldekpyaaiiggGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHalglpvppelvekgaNDAASDLIQFARDKhitilypkdfwctkihhpnqveifpshgipdgwepvdigprsVEEITSTITKCKKviwvgpvkfrfssqysngasKLTGMLCkvsqgtcnVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKgrmlpgvsaldrafpfdidwsaayhdpaqplvvdigsgngLFLLGMARKRKDLNFLGLEVNGKLVTHCRdslqlsgitngyfiATNATSTFRSIVASYPGKLILVSiqcpnpdfnrpehRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEcdtktnqggwlgensfgvrsdweqhvidrgapmyrlmlskpscvk
Flexible Loop (DISEMBL)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKtnqggwlgensfgvrsdWEQHVIDRGAPmyrlmlskpscvk
Low Complexity Region (SEG)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Disordered region (IsUnstruct)
********YAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLM********
Disordered Region (DISOPRED)
**KLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP****
Disordered Region (DISEMBL)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Disordered Region (DISPRO)
***LDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q9LD57	481	Phosphoglycerate kinase 1	no	no	0.511	0.446	0.310	2e-26
P50318	478	Phosphoglycerate kinase 2	no	no	0.511	0.449	0.310	5e-26
B0JUK5	211	tRNA (guanine-N(7)-)-meth	yes	no	0.428	0.853	0.356	7e-26
P29409	433	Phosphoglycerate kinase,	N/A	no	0.511	0.496	0.310	8e-26
Q8YVX4	219	tRNA (guanine-N(7)-)-meth	yes	no	0.447	0.858	0.346	1e-25
Q42961	481	Phosphoglycerate kinase,	N/A	no	0.5	0.436	0.322	4e-25
Q5N4Z6	402	Phosphoglycerate kinase O	yes	no	0.5	0.522	0.317	6e-25
Q31P73	402	Phosphoglycerate kinase O	yes	no	0.5	0.522	0.317	6e-25
Q3M3Q5	215	tRNA (guanine-N(7)-)-meth	yes	no	0.442	0.865	0.335	2e-24
A2C025	401	Phosphoglycerate kinase O	yes	no	0.485	0.508	0.352	4e-24

>sp|Q9LD57|PGKH1_ARATH Phosphoglycerate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=PGK1 PE=1 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 1/216 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct: 266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A++L+  A+ K +++L P D        P+   +I P+ GI DGW  +DIGP S++    
Sbjct: 326 ATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSIKTFNE 385

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +   + VIW GP+      +++ G   +   L ++S+      + G  +  A+ KV  +
Sbjct: 386 ALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVEKVGVA 445

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
               ++   G A  E L+G++LPGV ALD A P  +
Sbjct: 446 GVMSHISTGGGASLELLEGKVLPGVIALDEAIPVTV 481

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 3

>sp|P50318|PGKH2_ARATH Phosphoglycerate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=3

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 1/216 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct: 263 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 322

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ L+  A+ + +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct: 323 ATTLLAKAKARGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 382

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +   + VIW GP+      +++ G   +   L ++S+      + G  +  A+ KV  +
Sbjct: 383 ALDTTQTVIWNGPMGVFEFEKFAKGTEAVANKLAELSKKGVTTIIGGGDSVAAVEKVGVA 442

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
               ++   G A  E L+G++LPGV ALD A P  +
Sbjct: 443 GVMSHISTGGGASLELLEGKVLPGVVALDEATPVTV 478

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|B0JUK5|TRMB_MICAN tRNA (guanine-N(7)-)-methyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=trmB PE=3 SV=1

 Score =  118 bits (296), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 101/191 (52%), Gaps = 11/191 (5%)

Query: 221 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 280
           DW+  Y D  QPL +DIG   G FLL MA+   ++NFLG+E+   LV       +  G++
Sbjct: 25  DWNQVYQDMTQPLHLDIGCARGKFLLQMAQVEPEINFLGIEIRQPLVIEANQERERLGLS 84

Query: 281 NGYFIATNATSTFRSIVASYPG-KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 339
           N  F+  N       ++ S P  KL  VSIQ P+P F +   + R+VQ  LV A++  +V
Sbjct: 85  NLAFVFGNMNVAPEILLQSLPADKLFWVSIQFPDPWFKQRHSKRRVVQPELVIALAKYMV 144

Query: 340 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 399
             G VFLQSD+E + L M ++F  +              + +Q  WL EN F V ++ E+
Sbjct: 145 AGGWVFLQSDVESIALEMTERFQAHPHF----------VRQHQTPWLEENIFPVPTEREK 194

Query: 400 HVIDRGAPMYR 410
              ++G P+YR
Sbjct: 195 STYNKGQPVYR 205

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|P29409|PGKH_SPIOL Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2

 Score =  118 bits (296), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 1/216 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A G+ V   LVE+   D 
Sbjct: 218 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGMSVGSSLVEEDKLDL 277

Query: 66  ASDLIQFARDKHITILYPKDF-WCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ L+  A++K +++L P D     K       +I P+ GIPDGW  +DIGP S++  + 
Sbjct: 278 ATSLLAKAKEKGVSLLLPTDVVIADKFAADADSKIVPASGIPDGWMGLDIGPDSIKTFSE 337

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +   + VIW GP+      +++ G   +   L ++S+      + G  +  A+ KV  +
Sbjct: 338 ALDTTQTVIWNGPMGVFEFEKFAAGTEAIAKKLEEISKKGATTIIGGGDSVAAVEKVGVA 397

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
               ++   G A  E L+G+ LPGV AL+ A P  +
Sbjct: 398 EAMSHISTGGGASLELLEGKQLPGVLALNEADPVPV 433

Spinacia oleracea (taxid: 3562)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q8YVX4|TRMB_NOSS1 tRNA (guanine-N(7)-)-methyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trmB PE=3 SV=1

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 11/199 (5%)

Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 279
           ++W  AY  P QPL +DIG   G F+L MA+   + NFLGLE+   LV          G+
Sbjct: 31  LEWEKAYSTPHQPLHLDIGCARGRFVLQMAQVEPNWNFLGLEIRESLVIEANQFRSQLGL 90

Query: 280 TNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 338
           TN +++  NA ++ + +++S P G L  V+IQ P+P F     + R+VQ  LV+ +++ L
Sbjct: 91  TNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDPWFKTRHAKRRVVQPELVQDIANYL 150

Query: 339 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 398
              G VFLQSD+E V + M  +F            +    K   G WL EN   V ++ E
Sbjct: 151 AVGGVVFLQSDMEFVAVEMCDRF----------AANPAFKKVGTGEWLTENPLPVATERE 200

Query: 399 QHVIDRGAPMYRLMLSKPS 417
               +RG P+YR +  + S
Sbjct: 201 TTTQNRGEPVYRALFERSS 219

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1

 Score =  116 bits (290), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 1/211 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct: 265 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 324

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ L++ A+ K +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct: 325 ATSLLEKAKAKGVSLLLPSDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFND 384

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +   K VIW GP+      +++ G   +   L  +S       + G  +  A+ KV  +
Sbjct: 385 ALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVA 444

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
               ++   G A  E L+G++LPGV ALD A
Sbjct: 445 SVMSHISTGGGASLELLEGKVLPGVIALDEA 475

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q5N4Z6|PGK_SYNP6 Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 1/211 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   D 
Sbjct: 191 QRPLAAIVGGSKVSSKIGVIETLLDKCDKLLIGGGMIFTFYKAQGLSVGGSLVEEDKLDL 250

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L+  A++K + +L P D        P+   +      IPDGW  +DIGP SV++   
Sbjct: 251 ARSLMAKAQEKGVQLLLPVDVVVADKFAPDANAKTVAIDAIPDGWMGLDIGPESVKQFEG 310

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +  C+ VIW GP+      Q++ G   +   L  +++      + G  +  A+ KV  +
Sbjct: 311 ALADCRSVIWNGPMGVFEFDQFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVA 370

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
               ++   G A  E L+G++LPGV+ALD A
Sbjct: 371 SEMSHISTGGGASLELLEGKVLPGVAALDDA 401

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q31P73|PGK_SYNE7 Phosphoglycerate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=pgk PE=3 SV=1

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 1/211 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   D 
Sbjct: 191 QRPLAAIVGGSKVSSKIGVIETLLDKCDKLLIGGGMIFTFYKAQGLSVGGSLVEEDKLDL 250

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L+  A++K + +L P D        P+   +      IPDGW  +DIGP SV++   
Sbjct: 251 ARSLMAKAQEKGVQLLLPVDVVVADKFAPDANAKTVAIDAIPDGWMGLDIGPESVKQFEE 310

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +  C+ VIW GP+      Q++ G   +   L  +++      + G  +  A+ KV  +
Sbjct: 311 ALADCRSVIWNGPMGVFEFDQFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVA 370

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
               ++   G A  E L+G++LPGV+ALD A
Sbjct: 371 SEMSHISTGGGASLELLEGKVLPGVAALDDA 401

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q3M3Q5|TRMB_ANAVT tRNA (guanine-N(7)-)-methyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trmB PE=3 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 101/197 (51%), Gaps = 11/197 (5%)

Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 279
           ++W   Y  P QPL +DIG   G F+L MA+     NFLGLE+   LV          G+
Sbjct: 27  LEWEKVYSSPHQPLHLDIGCARGRFVLQMAQVEPRWNFLGLEIREPLVIEANQFRSQLGL 86

Query: 280 TNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 338
           +N +++  NA ++ + +++S P G L  V+IQ P+P F     + R+VQ  LV+ +++ L
Sbjct: 87  SNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDPWFKTRHAKRRVVQPELVQDIANYL 146

Query: 339 VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWE 398
              G VFLQSD+E V + M  +F            +    K   G WL EN   V ++ E
Sbjct: 147 AVGGVVFLQSDMEFVAVEMCDRF----------AANPAFKKVGSGEWLSENPLPVATERE 196

Query: 399 QHVIDRGAPMYRLMLSK 415
               +RG P+YR +  +
Sbjct: 197 TTTQNRGEPVYRALFER 213

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|A2C025|PGK_PROM1 Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 108/213 (50%), Gaps = 9/213 (4%)

Query: 8   PYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAAS 67
           P AAI+GG  + +K   L  L  +CD +I  G M F    A GL V   LVE+   + AS
Sbjct: 193 PLAAIVGGSKVSSKIGVLESLIDKCDKIIVGGGMIFTFYKARGLSVGNSLVEEDKLELAS 252

Query: 68  DLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITSTI 126
            L + A++K +  L P D        P+   ++     I +GW  +DIG  SVE   + +
Sbjct: 253 ALEKKAKEKGVEFLLPTDVVLADNFSPDANSKLSKVDAISEGWMGLDIGSESVELFQNAL 312

Query: 127 TKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVS-QGTCNVTVIGSMACKAIAKVSSSI 185
             CK VIW GP+      +++NG + +   L ++S QG C  T+IG     ++A V  + 
Sbjct: 313 KDCKTVIWNGPMGVFEFEKFANGTNAIANTLAELSAQGCC--TIIG--GGDSVAAVEKAG 368

Query: 186 FGLNMVE---SGSAVWEFLKGRMLPGVSALDRA 215
              NM      G A  E L+G++LPGVSALD A
Sbjct: 369 LAKNMSHISTGGGASLELLEGKVLPGVSALDDA 401

Prochlorococcus marinus (strain NATL1A) (taxid: 167555)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
359481547	618	PREDICTED: phosphoglycerate kinase-like	0.990	0.673	0.673	1e-169
297741637	581	unnamed protein product [Vitis vinifera]	0.990	0.716	0.673	1e-169
224140203	606	predicted protein [Populus trichocarpa]	1.0	0.693	0.659	1e-167
255556946	678	phosphoglycerate kinase, putative [Ricin	0.978	0.606	0.663	1e-167
356551092	710	PREDICTED: phosphoglycerate kinase-like	0.983	0.581	0.626	1e-161
449518274	675	PREDICTED: phosphoglycerate kinase, chlo	0.985	0.613	0.606	1e-151
449440121	674	PREDICTED: phosphoglycerate kinase, chlo	0.978	0.609	0.605	1e-150
357140541	769	PREDICTED: phosphoglycerate kinase-like	0.961	0.525	0.515	1e-121
242034345	649	hypothetical protein SORBIDRAFT_01g02093	0.957	0.619	0.507	1e-119
78708732	673	methyltransferase family protein, expres	0.961	0.600	0.519	1e-119

>gi|359481547|ref|XP_002276911.2| PREDICTED: phosphoglycerate kinase-like [Vitis vinifera]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 280/416 (67%), Positives = 341/416 (81%)

Query: 2   AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG 61
           A++++KP  AIIGGGNL +KA+A+ +LASRCDGL+FVG+M+FQIMHALGL VP  L+E G
Sbjct: 200 AQINKKPCIAIIGGGNLFDKASAVRYLASRCDGLVFVGMMAFQIMHALGLHVPLNLLEGG 259

Query: 62  ANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEE 121
               AS+++Q A+++ I ILYPKDFWC     P Q+EIFP++GI DGW PVD GP++++E
Sbjct: 260 PLKEASNIVQLAQNRKIPILYPKDFWCMTNDFPKQMEIFPAYGILDGWIPVDPGPKALDE 319

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
           I S +T CKK+IW+GPVKFR  SQ   GASKL  ML +++Q  C +TVIG+MACKA+ K 
Sbjct: 320 INSLLTGCKKIIWIGPVKFRLPSQDIYGASKLVSMLDRLTQSNCEITVIGNMACKAVMKE 379

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGN 241
           SS +   NMVE+ S VWEFLKGR LPG+ ALDRA+P +IDW+AAY  P+QPLVVDIGSGN
Sbjct: 380 SSFVSVYNMVENASVVWEFLKGRKLPGLMALDRAYPVEIDWNAAYSHPSQPLVVDIGSGN 439

Query: 242 GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP 301
           GLFLL MA++R+DLNFLGLE+N KLV  C D +   GI NGYFIATNATSTFRSIV+SYP
Sbjct: 440 GLFLLAMAKRREDLNFLGLEINEKLVRRCLDCVHQYGIMNGYFIATNATSTFRSIVSSYP 499

Query: 302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 361
           G L+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL  DGKVFLQSDIE V +RMK+ F
Sbjct: 500 GDLVLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASDGKVFLQSDIEAVAVRMKEHF 559

Query: 362 LEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 417
           L+YGKGKL +V +E  T+T++ GWL EN FGVRSDWEQHV+DRGAPMYRLMLSK +
Sbjct: 560 LKYGKGKLSVVHNEDCTETDRKGWLKENPFGVRSDWEQHVVDRGAPMYRLMLSKST 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741637|emb|CBI32769.3| unnamed protein product [Vitis vinifera]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 280/416 (67%), Positives = 341/416 (81%)

Query: 2   AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG 61
           A++++KP  AIIGGGNL +KA+A+ +LASRCDGL+FVG+M+FQIMHALGL VP  L+E G
Sbjct: 163 AQINKKPCIAIIGGGNLFDKASAVRYLASRCDGLVFVGMMAFQIMHALGLHVPLNLLEGG 222

Query: 62  ANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEE 121
               AS+++Q A+++ I ILYPKDFWC     P Q+EIFP++GI DGW PVD GP++++E
Sbjct: 223 PLKEASNIVQLAQNRKIPILYPKDFWCMTNDFPKQMEIFPAYGILDGWIPVDPGPKALDE 282

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
           I S +T CKK+IW+GPVKFR  SQ   GASKL  ML +++Q  C +TVIG+MACKA+ K 
Sbjct: 283 INSLLTGCKKIIWIGPVKFRLPSQDIYGASKLVSMLDRLTQSNCEITVIGNMACKAVMKE 342

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGN 241
           SS +   NMVE+ S VWEFLKGR LPG+ ALDRA+P +IDW+AAY  P+QPLVVDIGSGN
Sbjct: 343 SSFVSVYNMVENASVVWEFLKGRKLPGLMALDRAYPVEIDWNAAYSHPSQPLVVDIGSGN 402

Query: 242 GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP 301
           GLFLL MA++R+DLNFLGLE+N KLV  C D +   GI NGYFIATNATSTFRSIV+SYP
Sbjct: 403 GLFLLAMAKRREDLNFLGLEINEKLVRRCLDCVHQYGIMNGYFIATNATSTFRSIVSSYP 462

Query: 302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 361
           G L+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL  DGKVFLQSDIE V +RMK+ F
Sbjct: 463 GDLVLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASDGKVFLQSDIEAVAVRMKEHF 522

Query: 362 LEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 417
           L+YGKGKL +V +E  T+T++ GWL EN FGVRSDWEQHV+DRGAPMYRLMLSK +
Sbjct: 523 LKYGKGKLSVVHNEDCTETDRKGWLKENPFGVRSDWEQHVVDRGAPMYRLMLSKST 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140203|ref|XP_002323474.1| predicted protein [Populus trichocarpa] gi|222868104|gb|EEF05235.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 277/420 (65%), Positives = 337/420 (80%)

Query: 1   MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
           +A+ +++PY AIIGGGNL +KA+ALHFL SRCDGL+FVG+MSFQIMHALGL VP  LVE 
Sbjct: 187 VARTNKRPYVAIIGGGNLYDKASALHFLVSRCDGLVFVGMMSFQIMHALGLSVPSYLVEP 246

Query: 61  GANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVE 120
           GA  AA D+IQ A D++I IL+P DFWC   H P +++IFPSH I DGW PVD+GPRS++
Sbjct: 247 GAYKAALDIIQIAHDRNIPILHPMDFWCMNEHLPEKMDIFPSHHILDGWLPVDLGPRSLD 306

Query: 121 EITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK 180
           E+ S + KCKK++W+GPVKF+FS Q ++GASKL   L  + Q  C++TV G+MAC+A+  
Sbjct: 307 ELNSLLVKCKKILWIGPVKFKFSGQCADGASKLAQALNDLRQRNCDITVAGNMACQAMVM 366

Query: 181 VSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 240
            S S+   +M+E+ S +WEF KGR LPGV ALDRA+PF+IDW +AY +PAQPLVVDIGSG
Sbjct: 367 ESKSVLVNDMIENASVLWEFFKGRKLPGVMALDRAYPFEIDWKSAYCNPAQPLVVDIGSG 426

Query: 241 NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY 300
           +GLFLLGMAR+RKDLNFLGLE+N KLV  C DS+   GI NGYFI TNAT+TFRSIV+SY
Sbjct: 427 SGLFLLGMARRRKDLNFLGLEINSKLVRRCMDSVHQYGIQNGYFIVTNATTTFRSIVSSY 486

Query: 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 360
           PG+L+LVSIQCPNPDFN PEHRWRM+QRSL++AV DLL  DGKVFLQSD+E V LRMK+ 
Sbjct: 487 PGELVLVSIQCPNPDFNNPEHRWRMLQRSLIKAVVDLLALDGKVFLQSDLEAVALRMKEL 546

Query: 361 FLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK 420
           FL+ GKGKL L  D+   + N G WL EN FGV SDWEQHVIDRG PMYRLMLSK S ++
Sbjct: 547 FLKIGKGKLNLWNDQYHARMNLGEWLEENPFGVMSDWEQHVIDRGDPMYRLMLSKSSGIE 606

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556946|ref|XP_002519506.1| phosphoglycerate kinase, putative [Ricinus communis] gi|223541369|gb|EEF42920.1| phosphoglycerate kinase, putative [Ricinus communis]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 274/413 (66%), Positives = 339/413 (82%), Gaps = 2/413 (0%)

Query: 5   DEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGAND 64
           ++KPY AIIGGGNL +KAAAL FLAS+CDGL+FVG+MSFQIMHALG  VP  L+E  A+ 
Sbjct: 265 NKKPYIAIIGGGNLYDKAAALQFLASKCDGLVFVGMMSFQIMHALGYSVPSSLIEPKAHK 324

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           AA D+I FA  ++I+ILYPKDFWCT  H  N++E+ P+H + DGW PVD+GP S++EI +
Sbjct: 325 AALDIIHFAHKRNISILYPKDFWCTNAHVMNEMEVVPAHHLLDGWLPVDLGPMSLDEINT 384

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            + K KK+IW+GP KF+FS+   NGASKL  +L ++SQ TC+VTV+G++ACKA+   SSS
Sbjct: 385 LLVKSKKIIWIGPPKFKFSNPCINGASKLAQVLDELSQPTCDVTVVGNLACKAVMVESSS 444

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 244
           +   +++E+ S VW+F K R LPGV ALDRA+PF IDWSA YHDPAQPLVVDIG GNG+F
Sbjct: 445 LLAYDLIENASVVWDFFKRRNLPGVMALDRAYPFKIDWSAVYHDPAQPLVVDIGCGNGMF 504

Query: 245 LLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 304
           LLGMAR++KDLNFLGLE+N KLV  C DS+  SGI+NG+FIATNAT+TFRSIV+SYPG+L
Sbjct: 505 LLGMARRKKDLNFLGLEINKKLVRRCLDSVHQSGISNGHFIATNATTTFRSIVSSYPGEL 564

Query: 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 364
           +LVSIQCPNPDFN PEHRWRM+QRSLVEAV+DLL HDGKVFLQSDI+ V +RMK+ FL+Y
Sbjct: 565 VLVSIQCPNPDFNDPEHRWRMLQRSLVEAVADLLAHDGKVFLQSDIKTVAVRMKELFLKY 624

Query: 365 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 417
           G+G+L+LV D+ +       WL EN FGVRSDWEQHVID+G PMYRLMLSK +
Sbjct: 625 GRGRLMLVNDQFEATIRV--WLEENPFGVRSDWEQHVIDQGRPMYRLMLSKST 675

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551092|ref|XP_003543912.1| PREDICTED: phosphoglycerate kinase-like [Glycine max]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 263/420 (62%), Positives = 333/420 (79%), Gaps = 7/420 (1%)

Query: 1   MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
           +A+   KPY AI+GGGNL +KAA+  FLASRC G +FVG+MSFQ+MHALG+ VP  LV+ 
Sbjct: 296 LAEESRKPYVAILGGGNLYDKAASFQFLASRCQGFVFVGMMSFQVMHALGVSVPRNLVDH 355

Query: 61  GANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVE 120
            A + A D+++ ARD+++ ILYPKDFWC K   P Q+++FPSH I DGW PVD+GP S+E
Sbjct: 356 KAFNEALDIVRLARDRNVQILYPKDFWCRKKCDPTQLQVFPSHEISDGWVPVDLGPASLE 415

Query: 121 EITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK 180
           EI S +T CKK+IW+GPVKF  SS+Y+ GASKLT +L ++SQ +C +TV+G+MA K + +
Sbjct: 416 EICSMLTNCKKIIWIGPVKFTDSSKYTYGASKLTRILEQLSQNSCEITVVGTMASKLVRQ 475

Query: 181 VSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 240
             SS+  +NMVE+ S +WEFLKGR LPGV A+DR +PF+I+W++ Y DPAQ LVVDIGSG
Sbjct: 476 EKSSLSLINMVENASVLWEFLKGRKLPGVMAVDRGYPFEINWNSIYSDPAQSLVVDIGSG 535

Query: 241 NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY 300
           NGLFLL MAR+++DLNFLGLE+N KLV  C DS+   GI NGYFIATNATSTF SIV+SY
Sbjct: 536 NGLFLLEMARRKQDLNFLGLEINEKLVLRCLDSIHQFGIKNGYFIATNATSTFHSIVSSY 595

Query: 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 360
           PG+L+LVSIQCPNPDFN+PEHRWRM+QRSL+EAV DLL  +GK+FLQSD+E V +RMK+Q
Sbjct: 596 PGELVLVSIQCPNPDFNKPEHRWRMLQRSLIEAVVDLLAPNGKIFLQSDVEAVAIRMKEQ 655

Query: 361 FLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK 420
           F  YGKGKL       D +  Q  WL EN FGVRSDWE+HV++RGAPMYR+M +K S ++
Sbjct: 656 FFRYGKGKL-------DLEHGQSEWLEENPFGVRSDWERHVLERGAPMYRMMFTKSSDIR 708

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518274|ref|XP_004166167.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/419 (60%), Positives = 318/419 (75%), Gaps = 5/419 (1%)

Query: 2   AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG 61
           A+   +PY AIIGGGNL NK AALH LAS C  L+FVG+MSFQIM ALGL V   L+  G
Sbjct: 259 AQTKRQPYVAIIGGGNLLNKLAALHVLASTCSVLVFVGMMSFQIMQALGLSVSYRLMNHG 318

Query: 62  ANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEE 121
               A++LIQF+ DK + I+YPKDFWC  +    ++EIF SH IPDGW PVD+GP S++E
Sbjct: 319 VCKEAAELIQFSLDKRVRIVYPKDFWCANVDTSKKMEIFASHDIPDGWLPVDLGPTSLDE 378

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
           I + +   KK+IW+GPVKF  SSQ + GAS+L   L  +SQ  C++TV+G+ ACKAI + 
Sbjct: 379 INALLMNSKKIIWIGPVKFSDSSQSARGASRLARKLYDLSQRDCDITVVGTTACKAIMQE 438

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGN 241
           SS++   N+ E+ S VW+F KG+ LPGV ALDRA+P++I+W A + D A PLVVDIGSGN
Sbjct: 439 SSTLCAYNVFENASVVWDFFKGKQLPGVLALDRAYPYEINWDAVFCDTALPLVVDIGSGN 498

Query: 242 GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP 301
           G+FLL MAR+RKD NFLGLE+N KLV  C  S+    + NG+FIATNATSTFRSIV +YP
Sbjct: 499 GMFLLEMARRRKDHNFLGLEINEKLVKRCLHSVHQLEMKNGHFIATNATSTFRSIVCNYP 558

Query: 302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 361
           G+L+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL  +GKVFLQSD+E V LRM++ F
Sbjct: 559 GELVLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASNGKVFLQSDVEAVALRMREAF 618

Query: 362 LEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK 420
           L YGKGKL ++Q++   +     WL EN FGVRSDWE+HV+DRG PM+RLMLSK +  K
Sbjct: 619 LLYGKGKLGVLQEQVGEE-----WLSENPFGVRSDWERHVLDRGDPMFRLMLSKSTTTK 672

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440121|ref|XP_004137833.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/416 (60%), Positives = 316/416 (75%), Gaps = 5/416 (1%)

Query: 2   AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG 61
           A+   +PY AIIGGGNL NK AALH LAS C  L+FVG+MSFQIM ALGL V   L+  G
Sbjct: 259 AQTKRQPYVAIIGGGNLLNKLAALHVLASTCSVLVFVGMMSFQIMQALGLSVSYRLMNHG 318

Query: 62  ANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEE 121
               A++LIQF+ DK + I+YPKDFWC  +    ++EIF SH IPDGW PVD+GP S++E
Sbjct: 319 VCKEAAELIQFSLDKRVRIVYPKDFWCANVDTSKKMEIFASHDIPDGWLPVDLGPTSLDE 378

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
           I + +   KK+IW+GPVKF  SSQ + GAS+L   L  +SQ  C++TV+G+ ACKAI + 
Sbjct: 379 INALLMNSKKIIWIGPVKFSDSSQSARGASRLARKLYDLSQRDCDITVVGTTACKAIMQE 438

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGN 241
           SS++   N+ E+ S VW+F KG+ LPGV ALDRA+P++I+W A + D   PLVVDIGSGN
Sbjct: 439 SSTLCAYNVFENASVVWDFFKGKQLPGVLALDRAYPYEINWDAVFCDTTLPLVVDIGSGN 498

Query: 242 GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP 301
           G+FLL MAR+RKD NFLGLE+N KLV  C  S+    + NG+FIATNATSTFRSIV +YP
Sbjct: 499 GMFLLEMARRRKDHNFLGLEINEKLVKRCLHSVHQLEMKNGHFIATNATSTFRSIVCNYP 558

Query: 302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 361
           G+L+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL  +GKVFLQSD+E V LRM++ F
Sbjct: 559 GELVLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASNGKVFLQSDVEAVALRMREAF 618

Query: 362 LEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 417
           L YGKGKL ++Q++   +     WL EN FGVRSDWE+HV+DRG PM+RLMLSK +
Sbjct: 619 LLYGKGKLGVLQEQVGEE-----WLSENPFGVRSDWERHVLDRGDPMFRLMLSKST 669

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357140541|ref|XP_003571824.1| PREDICTED: phosphoglycerate kinase-like [Brachypodium distachyon]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/415 (51%), Positives = 288/415 (69%), Gaps = 11/415 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +PY AIIGG N   K  ALH LAS+CDGL FVG ++FQIM+ LG+PVP  L+E+ A   
Sbjct: 360 RRPYIAIIGGSNFLRKTPALHLLASQCDGLFFVGKLAFQIMNGLGIPVPSCLIERNATKE 419

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHG-----IPDGWEPVDIGPRSVE 120
           A  LIQ A +++I I YP D  C    +  ++EIF S       I  GW PVDIGP ++E
Sbjct: 420 ALQLIQIAHNRNIPIYYPTDLQCLNNRNHEKLEIFNSDALLSGLISLGWRPVDIGPSTLE 479

Query: 121 EITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK 180
           +I+S +   KK++W+GP  +  + + S G ++L  +L K SQ +C+V ++GS ACKA+  
Sbjct: 480 KISSLMPSYKKILWIGPTSYDLTKEISVGEAQLGQILDKASQNSCDVILVGSAACKAVKG 539

Query: 181 VSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 240
           +S      +  E+GS VWEFLKGR+LPG++ALD+++P+ I W+  + DP  PL VDIGSG
Sbjct: 540 ISDFSSQYSAFENGSIVWEFLKGRILPGIAALDKSYPYQIPWTDVFSDPEHPLFVDIGSG 599

Query: 241 NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY 300
           NGLFL  M+R  +  NFLGLE+N KLVT C   L  +   N +F++TNATSTFRSI++SY
Sbjct: 600 NGLFLFQMSRNWEGSNFLGLEMNEKLVTRCLQDLASAEKRNLHFVSTNATSTFRSIISSY 659

Query: 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 360
           PG+L +V+IQCPNPDFN+ ++RWRMV+R LVEAV+DLL  +GK+FLQSD+E V+L MK+Q
Sbjct: 660 PGELTMVTIQCPNPDFNKEQNRWRMVRRMLVEAVADLLQINGKIFLQSDVESVLLGMKEQ 719

Query: 361 FLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 415
           F+ +GKG+LV+ +D+       G    EN FGV SDWE HV+ RG PMYR ML K
Sbjct: 720 FISHGKGRLVVDRDD------GGHGRMENPFGVASDWEGHVLARGDPMYRTMLRK 768

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034345|ref|XP_002464567.1| hypothetical protein SORBIDRAFT_01g020930 [Sorghum bicolor] gi|241918421|gb|EER91565.1| hypothetical protein SORBIDRAFT_01g020930 [Sorghum bicolor]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/410 (50%), Positives = 275/410 (67%), Gaps = 8/410 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +PY AIIGG N   KA AL  L S CDGL FVG +SFQIM+ LG+ VP   +E+ A   
Sbjct: 247 RRPYIAIIGGSNFLRKAPALQMLTSLCDGLFFVGKLSFQIMNGLGMTVPSRFIERSAVKE 306

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
              +IQ ARD++I I YP D WC K      + +  S G   GW PVDIGP ++E+I+S 
Sbjct: 307 VLQIIQVARDRNIPIYYPTDLWCLKNDGSETLGVISSTGQLAGWTPVDIGPSTLEKISSI 366

Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
           I   +K++W+GP  +  +  +S G ++L  ++ K S  +C+V ++GS ACKAI + + S 
Sbjct: 367 IPSYEKILWIGPTNYNLTETFSVGGTQLGEIMEKASSDSCDVVLVGSAACKAIERKTDSS 426

Query: 186 FGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFL 245
                 ++ + VWEFLKGR+LPG++ALD+ +P+ I WS  + +P  PLVVDIGSGNGLFL
Sbjct: 427 SQYAEFQNATVVWEFLKGRILPGIAALDKCYPYRIPWSTVFFEPTLPLVVDIGSGNGLFL 486

Query: 246 LGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI 305
             MA+  +  NFLGLE+N KLV  C   +      N YF++TNATSTFRSIV+SYPG+L 
Sbjct: 487 FQMAKSCESSNFLGLEMNEKLVIRCLQGMTSDEKRNLYFVSTNATSTFRSIVSSYPGRLT 546

Query: 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 365
           LV+IQCPNPDFN+ ++RWRMV+R LVEAV DLL  +G+V+LQSD+E V+L MK+QFL Y 
Sbjct: 547 LVTIQCPNPDFNKEQNRWRMVRRMLVEAVVDLLHTNGQVYLQSDVESVLLVMKEQFLSYS 606

Query: 366 KGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 415
           KG+LV+            G   +N FGV SDWE+HV+ RGAPMYR ML K
Sbjct: 607 KGQLVI--------DGVSGHQIDNPFGVVSDWERHVLARGAPMYRTMLKK 648

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78708732|gb|ABB47707.1| methyltransferase family protein, expressed [Oryza sativa Japonica Group]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/412 (51%), Positives = 285/412 (69%), Gaps = 8/412 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P+ AIIGG N   KA AL+ LAS CDGL FVG +S QIM+  G+PVP   VEK +   
Sbjct: 267 RRPFIAIIGGSNFLGKAPALNLLASLCDGLFFVGKLSLQIMNGFGIPVPSCFVEKNSTKE 326

Query: 66  ASDLIQFARDKHITILYPKDFWC--TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
              LIQ A +++I I YP D WC   K ++  ++EI  S  +  GW P DIGP ++E+I+
Sbjct: 327 VLQLIQTAHNRNIPIYYPTDTWCLNNKNNNHEKLEILDSAELLPGWTPADIGPSTLEKIS 386

Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
           S +   KKV+W+GP  F  + ++S GA++L  +L K S  +C+V ++GS ACKA+  +S 
Sbjct: 387 SLMPLYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDVILVGSAACKAVKGISG 446

Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGL 243
           S       ++ S V EFLKG++LPGV+ALD+++P+ I W+A + D +QPLVVDIGSGNGL
Sbjct: 447 SSSKYTTFKNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQPLVVDIGSGNGL 506

Query: 244 FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGK 303
           FL  MAR  +  NFLGLE+N KLV  C   +      N YF++TNATSTFRSIV+SYPG+
Sbjct: 507 FLFQMARDWEGSNFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRSIVSSYPGQ 566

Query: 304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 363
           L LV+IQCPNPDFNR ++RWRMV+R LVEA++DLL  +GKV+LQSD+E V+LRMK+QF+ 
Sbjct: 567 LALVTIQCPNPDFNREQNRWRMVRRMLVEAIADLLQPNGKVYLQSDVESVLLRMKEQFMT 626

Query: 364 YGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 415
           +GKG+LV+  D        G    +N FG  SDWE+HV+ RGAPMYR ML K
Sbjct: 627 HGKGQLVVDDD------GGGDHQMDNPFGAASDWERHVLARGAPMYRTMLRK 672

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
TAIR|locus:2175971	312	AT5G17660 [Arabidopsis thalian	0.483	0.650	0.385	4.1e-33
TAIR|locus:2087750	481	PGK1 "phosphoglycerate kinase	0.511	0.446	0.310	5.2e-24
TAIR|locus:2205215	478	AT1G56190 [Arabidopsis thalian	0.509	0.447	0.317	1.3e-23
TAIR|locus:2206410	401	PGK "phosphoglycerate kinase"	0.495	0.518	0.338	1.5e-22
CGD|CAL0000415	417	PGK1 [Candida albicans (taxid:	0.488	0.491	0.297	5.4e-18
UNIPROTKB|P46273	417	PGK1 "Phosphoglycerate kinase"	0.488	0.491	0.297	5.4e-18
TIGR_CMR|BA_5367	394	BA_5367 "phosphoglycerate kina	0.490	0.522	0.291	7e-18
UNIPROTKB|E7ERH5	281	PGK1 "Phosphoglycerate kinase"	0.5	0.747	0.262	2.8e-17
POMBASE|SPBC14F5.04c	414	pgk1 "phosphoglycerate kinase	0.485	0.492	0.279	1.3e-16
UNIPROTKB|F1NU17	417	PGK1 "Uncharacterized protein"	0.490	0.494	0.279	4.1e-16

TAIR|locus:2175971 AT5G17660 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 81/210 (38%), Positives = 117/210 (55%)

Query:   207 PGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGK 265
             P  S+  +  P  + W   Y DP+ PL+VDIGSG+G FLL  A K  +  N+LGLE+  K
Sbjct:   102 PLSSSFSKPAPVPV-WDEVYKDPSLPLMVDIGSGSGRFLLWQANKNVESRNYLGLEIRQK 160

Query:   266 LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRM 325
             LV      +   G++N +FI  NA  +F  +++SYPG L +VSI CP+P F +   + R+
Sbjct:   161 LVKRANFWVNELGLSNVHFIFANAMVSFEHLISSYPGPLEIVSILCPDPHFKKRHQKRRV 220

Query:   326 VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 385
             VQ+ LV ++   L   GK+F+QSD+ +V   M+ Q  E        V    DT   + GW
Sbjct:   221 VQKPLVNSILQNLKPGGKIFVQSDVLDVAQDMRDQLDEESN-----VLQHMDTVDTEDGW 275

Query:   386 LGENSFGVRSDWEQHVIDRGAPMYRLMLSK 415
             L EN  G+R++ E H    GA +YR +  K
Sbjct:   276 LTENPMGIRTEREIHAEFEGARIYRRLYQK 305

GO:0005634 "nucleus" evidence=ISM

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

TAIR|locus:2087750 PGK1 "phosphoglycerate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 5.2e-24, P = 5.2e-24
 Identities = 67/216 (31%), Positives = 111/216 (51%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct:   266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325

Query:    66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A++L+  A+ K +++L P D        P+   +I P+ GI DGW  +DIGP S++    
Sbjct:   326 ATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSIKTFNE 385

Query:   125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
              +   + VIW GP+      +++ G   +   L ++S+      + G  +  A+ KV  +
Sbjct:   386 ALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVEKVGVA 445

Query:   185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
                 ++   G A  E L+G++LPGV ALD A P  +
Sbjct:   446 GVMSHISTGGGASLELLEGKVLPGVIALDEAIPVTV 481

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009579 "thylakoid" evidence=IDA

GO:0010319 "stromule" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2205215 AT1G56190 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 69/217 (31%), Positives = 112/217 (51%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct:   263 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 322

Query:    66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A+ L+  A+ + +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct:   323 ATTLLAKAKARGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 382

Query:   125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
              +   + VIW GP+  F F  +++ G   +   L ++S+      + G  +  A+ KV  
Sbjct:   383 ALDTTQTVIWNGPMGVFEFE-KFAKGTEAVANKLAELSKKGVTTIIGGGDSVAAVEKVGV 441

Query:   184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
             +    ++   G A  E L+G++LPGV ALD A P  +
Sbjct:   442 AGVMSHISTGGGASLELLEGKVLPGVVALDEATPVTV 478

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009579 "thylakoid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2206410 PGK "phosphoglycerate kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 72/213 (33%), Positives = 110/213 (51%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             +KP+AAI+GG  +  K   +  L +  D L+  G M F    A GL V   LVE+   D 
Sbjct:   191 KKPFAAIVGGSKVSTKIGVIESLLNTVDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDL 250

Query:    66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A  L++ A+ K +++L P D        P+   +I P+  IPDGW  +DIGP S++  + 
Sbjct:   251 AKSLMEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPATAIPDGWMGLDIGPDSIKTFSE 310

Query:   125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSM-ACKAIAKVS 182
              +   K +IW GP+  F F  +++ G   +   L ++S G    T+IG   +  A+ KV 
Sbjct:   311 ALDTTKTIIWNGPMGVFEFD-KFAAGTEAVAKQLAELS-GKGVTTIIGGGDSVAAVEKVG 368

Query:   183 SSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
              +    ++   G A  E L+G+ LPGV ALD A
Sbjct:   369 LADKMSHISTGGGASLELLEGKPLPGVLALDEA 401

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA;NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

CGD|CAL0000415 PGK1 [Candida albicans (taxid:5476)]

 Score = 241 (89.9 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 63/212 (29%), Positives = 102/212 (48%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
             E+P+ AI+GG  + +K   +  L  + D LI  G M+F     L  +P+   L ++    
Sbjct:   204 ERPFLAILGGAKVSDKIQLIDNLLDKVDMLIVGGGMAFTFKKILNKMPIGDSLFDEAGAK 263

Query:    65 AASDLIQFARDKHITILYPKDF-WCTKIHHPNQVE-IFPSHGIPDGWEPVDIGPRSVEEI 122
                 L++ A+  ++ ++ P DF    K     +      + GIPD W  +D GP+SVE  
Sbjct:   264 NVEHLVEKAKKNNVELILPVDFVTADKFDKDAKTSSATDAEGIPDNWMGLDCGPKSVELF 323

Query:   123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
                + K K ++W GP   F F  +++NG   L     K ++   N+ +IG      +AK 
Sbjct:   324 QQAVAKAKTIVWNGPPGVFEFE-KFANGTKSLLDAAVKSAENG-NIVIIGGGDTATVAKK 381

Query:   182 SSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 212
                +  L+ V +G  A  E L+G+ LPGV AL
Sbjct:   382 YGVVEKLSHVSTGGGASLELLEGKDLPGVVAL 413

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0006096 "glycolysis" evidence=NAS

GO:0004618 "phosphoglycerate kinase activity" evidence=ISS;NAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051701 "interaction with host" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=IEA

UNIPROTKB|P46273 PGK1 "Phosphoglycerate kinase" [Candida albicans SC5314 (taxid:237561)]

 Score = 241 (89.9 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 63/212 (29%), Positives = 102/212 (48%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
             E+P+ AI+GG  + +K   +  L  + D LI  G M+F     L  +P+   L ++    
Sbjct:   204 ERPFLAILGGAKVSDKIQLIDNLLDKVDMLIVGGGMAFTFKKILNKMPIGDSLFDEAGAK 263

Query:    65 AASDLIQFARDKHITILYPKDF-WCTKIHHPNQVE-IFPSHGIPDGWEPVDIGPRSVEEI 122
                 L++ A+  ++ ++ P DF    K     +      + GIPD W  +D GP+SVE  
Sbjct:   264 NVEHLVEKAKKNNVELILPVDFVTADKFDKDAKTSSATDAEGIPDNWMGLDCGPKSVELF 323

Query:   123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
                + K K ++W GP   F F  +++NG   L     K ++   N+ +IG      +AK 
Sbjct:   324 QQAVAKAKTIVWNGPPGVFEFE-KFANGTKSLLDAAVKSAENG-NIVIIGGGDTATVAKK 381

Query:   182 SSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 212
                +  L+ V +G  A  E L+G+ LPGV AL
Sbjct:   382 YGVVEKLSHVSTGGGASLELLEGKDLPGVVAL 413

GO:0004618 "phosphoglycerate kinase activity" evidence=ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006096 "glycolysis" evidence=NAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0051701 "interaction with host" evidence=IPI

TIGR_CMR|BA_5367 BA_5367 "phosphoglycerate kinase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 239 (89.2 bits), Expect = 7.0e-18, P = 7.0e-18
 Identities = 61/209 (29%), Positives = 101/209 (48%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             E+P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  +   L E    + 
Sbjct:   186 ERPFTAIIGGAKVKDKIGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSLCEDDKIEL 245

Query:    66 ASDLIQFARDKHITILYPKDFWCTK-IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A + +Q A++K +    P D   T+        +I     IP  WE VDIGP++ E    
Sbjct:   246 AKEFMQLAKEKGVNFYMPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYAD 305

Query:   125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
              I   K V+W GP+     + ++ G +K  G     ++GT +V + G  +  A+ K   +
Sbjct:   306 VIKNSKLVVWNGPMGVFEMTPFAEG-TKAVGQALADAEGTYSV-IGGGDSAAAVEKFGMA 363

Query:   185 IFGLNMVESGSAVWEFLKGRMLPGVSALD 213
                 ++   G A  EF++G+ LPGV  L+
Sbjct:   364 DKMSHISTGGGASLEFMEGKELPGVVCLN 392

GO:0004618 "phosphoglycerate kinase activity" evidence=ISS

GO:0006096 "glycolysis" evidence=ISS

UNIPROTKB|E7ERH5 PGK1 "Phosphoglycerate kinase" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 57/217 (26%), Positives = 103/217 (47%)

Query:     1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVE 59
             + + D +P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L +
Sbjct:    64 LGRPDGRPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFD 123

Query:    60 KGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPR 117
             +       DL+  A    + I  P DF        N    +   + GIP GW  +D GP 
Sbjct:   124 EEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPE 183

Query:   118 SVEEITSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSM-AC 175
             S ++    +T+ K+++W GPV  F + + ++ G   L   + K +   C +T+IG     
Sbjct:   184 SSKKYAEAVTRAKQIVWNGPVGVFEWEA-FARGTKALMDEVVKATSRGC-ITIIGGGDTA 241

Query:   176 KAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
                AK ++     ++   G A  E L+G++LPGV AL
Sbjct:   242 TCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDAL 278

GO:0006096 "glycolysis" evidence=IEA

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA

POMBASE|SPBC14F5.04c pgk1 "phosphoglycerate kinase Pgk1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 229 (85.7 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 59/211 (27%), Positives = 98/211 (46%)

Query:     7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
             +P+ AI+GG  + +K   +  L  + + LI  G M+F  +  L G+ +   L ++  +  
Sbjct:   203 RPFLAILGGAKVADKIQLIDNLLDKVNRLIICGGMAFTFLKVLNGMKIGDSLFDEAGSKN 262

Query:    66 ASDLIQFARDKHITILYPKDF-WCTKIHHPNQV-EIFPSHGIPDGWEPVDIGPRSVEEIT 123
                ++  A+  ++ +  P DF    K     +V       GIPDGW  +D GP+S  +  
Sbjct:   263 VESMMAKAKKNNVEVFLPVDFVTADKFDKDAKVGSATAEEGIPDGWMGLDCGPKSSAKFA 322

Query:   124 STITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
               IT  K ++W GP   F F + ++ G   +     K  +   NV ++G      +AK  
Sbjct:   323 EVITTSKTIVWNGPAGVFEFDN-FAKGTKSMLDACVKTCEAG-NVVIVGGGDTATVAKKY 380

Query:   183 SSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 212
                  L+ V +G  A  E L+G+ LPGV AL
Sbjct:   381 GKEDALSHVSTGGGASLELLEGKALPGVVAL 411

GO:0004618 "phosphoglycerate kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IC

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006094 "gluconeogenesis" evidence=ISO

GO:0006096 "glycolysis" evidence=ISO

UNIPROTKB|F1NU17 PGK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 225 (84.3 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 59/211 (27%), Positives = 101/211 (47%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
             E+P+ AI+GG  + +K   +  +  + + +I  G M+F  +  L  + +   L ++  + 
Sbjct:   205 ERPFLAILGGAKVQDKIQLISNMLDKVNEMIIGGGMAFTFLKVLNNMQIGNSLFDEEGSK 264

Query:    65 AASDLIQFARDKHITILYPKDF-WCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
                DL+  A    + I  P DF    K   H    E   + GIP GW  +D GP SV++ 
Sbjct:   265 IVKDLMAKAEKNGVKITLPVDFITADKFDEHAQTGEATVASGIPAGWMGLDCGPESVKKF 324

Query:   123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSM-ACKAIAKV 181
                + + K+++W GPV      ++S G   L   + +V+   C +T+IG        AK 
Sbjct:   325 VEVVGRAKQIVWNGPVGVFEWDKFSKGTKALMDKVVEVTGKGC-ITIIGGGDTATCCAKW 383

Query:   182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
             ++     ++   G A  E L+G++LPGV AL
Sbjct:   384 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 414

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.2.3	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.691
3rd Layer	2.7.2	LOW CONFIDENCE prediction!
3rd Layer	2.1.1.33	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023235001	RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (581 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018496001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)		•	•				•		0.564
	GSVIVG00036055001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (321 aa)		•					•		0.483
	GSVIVG00024314001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)		•					•		0.483
	GSVIVG00038611001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (573 aa)							•		0.455
	26N20_30	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (493 aa)							•		0.455
	GSVIVG00025495001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (475 aa)							•		0.455
	GSVIVG00024850001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (491 aa)							•		0.455
	GSVIVG00023818001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (569 aa)							•		0.455
	GSVIVG00021710001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (264 aa)							•		0.455
	GSVIVG00021709001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (267 aa)							•		0.455

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
PLN03034	481	PLN03034, PLN03034, phosphoglycerate kinase; Provi	1e-29
cd00318	397	cd00318, Phosphoglycerate_kinase, Phosphoglycerate	8e-27
PLN02282	401	PLN02282, PLN02282, phosphoglycerate kinase	4e-26
PRK00073	389	PRK00073, pgk, phosphoglycerate kinase; Provisiona	3e-24
pfam00162	383	pfam00162, PGK, Phosphoglycerate kinase	1e-22
COG0126	395	COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydr	5e-22
pfam02390	198	pfam02390, Methyltransf_4, Putative methyltransfer	1e-21
PRK00121	202	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe	2e-21
PRK13962	645	PRK13962, PRK13962, bifunctional phosphoglycerate	3e-21
PTZ00005	417	PTZ00005, PTZ00005, phosphoglycerate kinase; Provi	4e-21
COG0220	227	COG0220, COG0220, Predicted S-adenosylmethionine-d	1e-19
TIGR00091	194	TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt	2e-16
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	3e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.002

>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional

 Score =  119 bits (300), Expect = 1e-29
 Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct: 266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ L+  A+ K +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct: 326 ATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 385

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
            +   + VIW GP+  F F  +++ G   +   L ++S       + G  +  A+ KV  
Sbjct: 386 ALDTTQTVIWNGPMGVFEF-EKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGV 444

Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFP 217
           +    ++   G A  E L+G+ LPGV ALD A P
Sbjct: 445 ADVMSHISTGGGASLELLEGKELPGVVALDEATP 478

Length = 481

>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate

 Score =  110 bits (277), Expect = 8e-27
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 11/215 (5%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   +  L  + D LI  G M+F  + A G+ +   L E+   + 
Sbjct: 188 ERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIEL 247

Query: 66  ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L++ A+ K + I+ P D     K       ++    GIPDGW  +DIGP+++E    
Sbjct: 248 AKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAE 307

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
            I K K ++W GP+  F F   ++ G   +   +   ++     ++IG   + A      
Sbjct: 308 VIRKAKTIVWNGPMGVFEF-PAFAKGTKAIADAIAAATKAGA-FSIIGGGDTAAAAEKFG 365

Query: 181 VSSSIFGLNMVES-GSAVWEFLKGRMLPGVSALDR 214
           ++  I   + V + G A  E L+G+ LPGV+AL+ 
Sbjct: 366 LADKI---SHVSTGGGASLELLEGKELPGVAALEE 397

This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients. . Length = 397

>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase

 Score =  108 bits (271), Expect = 4e-26
 Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 3/212 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP+AAI+GG  +  K   +  L  + D L+  G M F    A G  V   LVE+   D 
Sbjct: 191 KKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDL 250

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ LI+ A+ K +++L P D        P+   ++ P+  IPDGW  +DIGP S++  + 
Sbjct: 251 ATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSE 310

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
            +   K +IW GP+  F F  +++ G   +   L ++S       + G  +  A+ KV  
Sbjct: 311 ALDTTKTIIWNGPMGVFEF-EKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL 369

Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
           +    ++   G A  E L+G+ LPGV ALD A
Sbjct: 370 ADKMSHISTGGGASLELLEGKPLPGVLALDDA 401

Length = 401

>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional

 Score =  103 bits (259), Expect = 3e-24
 Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 21/217 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   L  L  + D LI  G M+   + A G  V   LVE+   D 
Sbjct: 184 ERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDT 243

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
           A +L++ A++K + I  P D    K     +  +     IPD W  +DIGP+++E     
Sbjct: 244 AKELLEKAKEKGVKIPLPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEI 303

Query: 126 ITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIAK 180
           I   K ++W GP+  F F   ++ G    T  + K +++ T   ++IG   + A      
Sbjct: 304 IKDAKTIVWNGPMGVFEF-ENFAKG----TKAVAKAIAESTA-FSIIGGGDTAAAVEKLG 357

Query: 181 VSSSIF----GLNMVESGSAVWEFLKGRMLPGVSALD 213
           ++        G      G A  EFL+G+ LPGV+AL+
Sbjct: 358 LADKFSHISTG------GGASLEFLEGKELPGVAALE 388

Length = 389

>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase

 Score = 97.9 bits (245), Expect = 1e-22
 Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   +  L  + D L+  G M+   + A G  +   LVE+   + 
Sbjct: 187 ERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGGGMANTFLKAQGYNIGKSLVEEDLIET 246

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A +L++ A++K + I+ P D         + + ++     IPDGW  +DIGP+++E    
Sbjct: 247 AKELLEKAKEKGVKIVLPVDVVVADEFSADAETKVVDVDEIPDGWMGLDIGPKTIELFAE 306

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNG 149
            I   K V+W GP+  F F   ++ G
Sbjct: 307 VIKDAKTVVWNGPMGVFEF-ENFAKG 331

Length = 383

>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

 Score = 96.8 bits (242), Expect = 5e-22
 Identities = 68/222 (30%), Positives = 103/222 (46%), Gaps = 26/222 (11%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   +  L  + D LI  G M+   + A G  V   LVE    D 
Sbjct: 190 ERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDG 249

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
           A +L++ A+DK   I+ P D    K              IPD    +DIGP+++E     
Sbjct: 250 AKELLEKAKDK---IVLPVDVVVAK-EFSRDAPATVKLEIPDDLMILDIGPKTIELFAEI 305

Query: 126 ITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIAK 180
           I   K ++W GP+  F F   ++ G    T  + K +++ +   ++IG   + A  AI K
Sbjct: 306 IKGAKTIVWNGPMGVFEF-ENFAKG----TEEVAKAIAKSSGAFSIIGGGDTAA--AIDK 358

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALDRAFP 217
                 GL    S     G A  EFL+G+ LPGV AL+ +  
Sbjct: 359 -----LGLADKISHISTGGGASLEFLEGKELPGVEALEESAK 395

Length = 395

>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase

 Score = 91.6 bits (228), Expect = 1e-21
 Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 17/202 (8%)

Query: 218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL-QL 276
           F +DW A + +  QPL ++IG G G FL+ MA+K  D  F+G+E+    V      +  L
Sbjct: 9   FTLDWQALFGNE-QPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIAL 67

Query: 277 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 336
            G+ N   +  +A     ++     G L  + I  P+P   +  H+ R++Q   ++  + 
Sbjct: 68  RGLQNLRILCGDAMKLLPNLFP--DGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYAR 125

Query: 337 LLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN---SFGV 393
           +L   G + L +D+EE    M +   E+   + +L          +   L E+      +
Sbjct: 126 VLKPGGVLHLATDVEEYFEWMLEHLSEHPLFERIL----------ESTDLNEDPITDLRI 175

Query: 394 RSDWEQHVIDRGAPMYRLMLSK 415
            +++EQ V   G P++ L+  K
Sbjct: 176 STEYEQKVQRLGGPIFELIFIK 197

This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Length = 198

>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed

 Score = 91.4 bits (228), Expect = 2e-21
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 271
             R  P  +DW+  + + A P+ ++IG G G FL+ MA+   D+NF+G+EV+   V    
Sbjct: 23  WPRLSPAPLDWAELFGNDA-PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL 81

Query: 272 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 331
             ++  G+TN   +  +A      +     G L  + +  P+P   +  H+ R+VQ   +
Sbjct: 82  KKIEEEGLTNLRLLCGDAVEVLLDMFP--DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFL 139

Query: 332 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 365
              +  L   G++   +D E     M +     G
Sbjct: 140 ALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEG 173

Length = 202

>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

 Score = 95.9 bits (239), Expect = 3e-21
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 24/218 (11%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AI+GG  + +K   +  L  + D L+  G M++  + A G  V   LVE+   D 
Sbjct: 187 QRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDL 246

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI--FPSHGIPDGWEPVDIGPRSVEEIT 123
           A +L+  A +K + +L P D    K    N  E    PS  IP+ W  +DIGP ++E   
Sbjct: 247 AKELLAKAEEKGVKLLLPVDSVVAK-EFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFA 305

Query: 124 STITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
             I   K ++W GP+  F F + ++ G      +   V++    +T+IG   S A  A+ 
Sbjct: 306 KKIADAKTIVWNGPMGVFEFDN-FAEGTRA---VAEAVAESGA-ITIIGGGDSAA--AVE 358

Query: 180 KVSSSIFGL-----NMVESGSAVWEFLKGRMLPGVSAL 212
           K      G      ++   G A  EFL+G++LPG++ L
Sbjct: 359 K-----LGFADKMSHISTGGGASLEFLEGKVLPGIACL 391

Length = 645

>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional

 Score = 94.4 bits (235), Expect = 4e-21
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 19/218 (8%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           ++P+ AI+GG  + +K   +  L  + D +I  G M+F     L  +P+   L ++    
Sbjct: 205 QRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAK 264

Query: 65  AASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
              ++++ A++K++ I  P DF C  K  +    ++     GIPDGW  +D GP+S+EE 
Sbjct: 265 IVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEF 324

Query: 123 TSTITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG-----SMA-- 174
              I + K ++W GP   F     ++ G+  +   + K ++    +T++G     S+   
Sbjct: 325 AEAILRAKTIVWNGPQGVFEM-PNFAKGSIAMLDAVVKATEKGA-ITIVGGGDTASLVEK 382

Query: 175 CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
             A  KVS    G      G A  E L+G+ LPGV AL
Sbjct: 383 TGAANKVSHVSTG------GGASLELLEGKELPGVVAL 414

Length = 417

>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 15/202 (7%)

Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 279
            DWSA + +   P+V++IG G G FL+ MA+K  + NFLG+E+    V      ++  G+
Sbjct: 38  GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97

Query: 280 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 339
            N   +  +A      ++    G L  + I  P+P   +  H+ R+ Q   ++  +  L 
Sbjct: 98  KNLRLLCGDAVEVLDYLIP--DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK 155

Query: 340 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE---CDTKTNQGGWLGENSFGVRSD 396
             G +   +D EE    M  + LE+        +D         N      E  F     
Sbjct: 156 PGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKF----- 210

Query: 397 WEQHVIDRGAPMYRLMLSKPSC 418
                   G P+Y L   K   
Sbjct: 211 -----RRLGHPVYDLEFIKKKG 227

Length = 227

>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 16/198 (8%)

Query: 221 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 280
           D++  +     PL ++IG G G FL+ MA++  D NFLG+E++  +V    +     G+ 
Sbjct: 8   DFATVF-GNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK 66

Query: 281 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 340
           N + +  +A            G L  V +  P+P   +  ++ R+ Q   ++  +++L  
Sbjct: 67  NLHVLCGDANELLDKFFPD--GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK 124

Query: 341 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR---SDW 397
            G +  ++D E +   M +   E                T++   L  +        +++
Sbjct: 125 GGVIHFKTDNEPLFEDMLKVLSEND----------LFENTSKSTDLNNSPLSRPRNMTEY 174

Query: 398 EQHVIDRGAPMYRLMLSK 415
           EQ     G P++ L   +
Sbjct: 175 EQRFERLGHPVFDLCFER 192

This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 291
             V+D G+G+G FLL  AR   D   +G+E++ +     R  L L+G+     +      
Sbjct: 2   DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRV---VVG 58

Query: 292 TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRS---LVEAVSDLLVHDGKVFL 346
             R ++    G   LV     NP +       +  +      + A   LL   G + +
Sbjct: 59  DARELLELPDGSFDLV---LGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113

This family contains methyltransferase domains. Length = 117

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN 281
           V+DIG G G   + +AR        G++++ +++   R++ +L+    
Sbjct: 5   VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR 52

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
PLN03034	481	phosphoglycerate kinase; Provisional	100.0
COG0126	395	Pgk 3-phosphoglycerate kinase [Carbohydrate transp	100.0
cd00318	397	Phosphoglycerate_kinase Phosphoglycerate kinase (P	100.0
PLN02282	401	phosphoglycerate kinase	100.0
PRK00073	389	pgk phosphoglycerate kinase; Provisional	100.0
PTZ00005	417	phosphoglycerate kinase; Provisional	100.0
KOG1367	416	consensus 3-phosphoglycerate kinase [Carbohydrate	100.0
PRK13962	645	bifunctional phosphoglycerate kinase/triosephospha	100.0
PF00162	384	PGK: Phosphoglycerate kinase; InterPro: IPR001576	100.0
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	100.0
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	100.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	100.0
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	100.0
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.96
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.93
KOG3115	249	consensus Methyltransferase-like protein [General	99.8
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.69
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.62
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.62
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.6
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.58
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.57
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.57
PRK07402	196	precorrin-6B methylase; Provisional	99.55
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.55
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.54
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.54
COG2890	280	HemK Methylase of polypeptide chain release factor	99.53
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.53
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.53
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.53
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.52
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.52
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.52
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.52
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.51
COG4123	248	Predicted O-methyltransferase [General function pr	99.51
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.51
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.5
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.49
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.49
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.48
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.48
PLN02244	340	tocopherol O-methyltransferase	99.47
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.47
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.46
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.46
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.46
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.45
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.45
PRK04266	226	fibrillarin; Provisional	99.45
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.44
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.44
PRK11207	197	tellurite resistance protein TehB; Provisional	99.44
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.43
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.43
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.43
PRK14968	188	putative methyltransferase; Provisional	99.41
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.41
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.4
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.39
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.39
PRK14967	223	putative methyltransferase; Provisional	99.38
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.38
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.37
KOG1271	227	consensus Methyltransferases [General function pre	99.37
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.37
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.36
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.35
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.35
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.35
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.35
PLN02490	340	MPBQ/MSBQ methyltransferase	99.34
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.34
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.33
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.33
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.31
PLN02336	475	phosphoethanolamine N-methyltransferase	99.31
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.31
PRK06922	677	hypothetical protein; Provisional	99.3
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.3
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.29
PRK00811	283	spermidine synthase; Provisional	99.28
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.28
PRK04457	262	spermidine synthase; Provisional	99.28
PLN02672	1082	methionine S-methyltransferase	99.28
PLN03075	296	nicotianamine synthase; Provisional	99.28
PRK12335	287	tellurite resistance protein TehB; Provisional	99.26
PRK01581	374	speE spermidine synthase; Validated	99.26
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.25
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.23
PRK08317	241	hypothetical protein; Provisional	99.23
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.23
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.22
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.22
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.22
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.21
TIGR00438	188	rrmJ cell division protein FtsJ.	99.21
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.21
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.19
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.19
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.19
PLN02366	308	spermidine synthase	99.19
PRK03612	521	spermidine synthase; Provisional	99.19
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.19
PTZ00146	293	fibrillarin; Provisional	99.18
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.18
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.18
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.18
PHA03411	279	putative methyltransferase; Provisional	99.17
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.17
TIGR03438	301	probable methyltransferase. This model represents	99.17
PRK05785	226	hypothetical protein; Provisional	99.17
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.16
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.15
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.14
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.14
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.14
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.13
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.13
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.13
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.12
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.11
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.11
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.11
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.1
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.1
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.09
KOG2904	328	consensus Predicted methyltransferase [General fun	99.09
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.08
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.08
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.08
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.08
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.08
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.08
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.06
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.06
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.06
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.06
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.05
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.04
COG4122	219	Predicted O-methyltransferase [General function pr	99.04
PLN02336	475	phosphoethanolamine N-methyltransferase	99.04
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.03
PLN02476	278	O-methyltransferase	99.03
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.01
KOG4300	252	consensus Predicted methyltransferase [General fun	98.99
PRK06202	232	hypothetical protein; Provisional	98.98
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.95
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.93
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.93
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.93
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.92
PLN02823	336	spermine synthase	98.92
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.91
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.89
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.88
PHA03412	241	putative methyltransferase; Provisional	98.88
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.87
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.83
KOG2899	288	consensus Predicted methyltransferase [General fun	98.83
KOG2361	264	consensus Predicted methyltransferase [General fun	98.81
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.79
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.76
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.75
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.72
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.72
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.72
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.71
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.71
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.69
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.66
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.65
KOG3010	261	consensus Methyltransferase [General function pred	98.63
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.6
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.58
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.58
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.58
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.57
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.57
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.55
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.55
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.55
COG2521	287	Predicted archaeal methyltransferase [General func	98.52
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.52
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.52
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.51
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.51
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.5
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.49
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.48
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.46
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.42
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.42
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.4
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.38
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.29
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.28
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.28
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.27
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.26
COG2520	341	Predicted methyltransferase [General function pred	98.25
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.25
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.22
PRK04148	134	hypothetical protein; Provisional	98.22
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.21
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.2
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.18
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.18
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.16
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.15
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.13
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.12
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.09
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.09
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.08
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.96
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.95
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.92
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.91
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.9
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.87
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.8
PRK00536	262	speE spermidine synthase; Provisional	97.8
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.76
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.71
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.7
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.67
PF13679	141	Methyltransf_32: Methyltransferase domain	97.65
KOG2730	263	consensus Methylase [General function prediction o	97.64
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.63
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.62
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.61
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.61
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.56
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.53
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.53
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.44
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.42
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.42
KOG1331	293	consensus Predicted methyltransferase [General fun	97.4
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.4
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.37
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.33
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.28
KOG2940	325	consensus Predicted methyltransferase [General fun	97.26
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.23
COG4076	252	Predicted RNA methylase [General function predicti	97.22
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.18
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	97.13
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.1
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.1
PRK10742	250	putative methyltransferase; Provisional	97.1
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.07
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.05
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.0
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.99
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.81
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.79
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.52
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.38
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.36
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.24
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.03
COG3897	218	Predicted methyltransferase [General function pred	95.94
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	95.8
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.7
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.67
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.66
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	95.62
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	95.51
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.45
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	95.12
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.1
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.04
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.88
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.87
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.75
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.74
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	94.42
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.42
COG0286	489	HsdM Type I restriction-modification system methyl	94.34
PRK13699	227	putative methylase; Provisional	94.29
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.03
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	93.96
PRK11524	284	putative methyltransferase; Provisional	93.94
COG4798	238	Predicted methyltransferase [General function pred	93.91
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	93.58
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.42
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.36
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	93.24
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	93.06
COG4301	321	Uncharacterized conserved protein [Function unknow	92.9
PRK11524	284	putative methyltransferase; Provisional	92.85
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	92.65
KOG1501	636	consensus Arginine N-methyltransferase [General fu	92.38
COG3129	292	Predicted SAM-dependent methyltransferase [General	92.12
PLN02668	386	indole-3-acetate carboxyl methyltransferase	91.72
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.22
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	91.07
PRK13699	227	putative methylase; Provisional	90.96
KOG4058	199	consensus Uncharacterized conserved protein [Funct	90.36
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	89.6
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	89.45
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	88.85
COG4121	252	Uncharacterized conserved protein [Function unknow	88.81
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	88.32
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	88.1
PRK03659	601	glutathione-regulated potassium-efflux system prot	87.74
COG1568	354	Predicted methyltransferases [General function pre	87.7
KOG2078	495	consensus tRNA modification enzyme [RNA processing	86.82
PHA01634	156	hypothetical protein	86.67
KOG2912	419	consensus Predicted DNA methylase [Function unknow	85.71
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	85.09
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	85.03
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	83.67
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	83.19
PRK10669	558	putative cation:proton antiport protein; Provision	83.11
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	83.08
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	82.25
COG1565	370	Uncharacterized conserved protein [Function unknow	81.06
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	80.7

>PLN03034 phosphoglycerate kinase; Provisional

Probab=100.00  E-value=4.7e-62  Score=490.48  Aligned_cols=214  Identities=31%  Similarity=0.540  Sum_probs=198.1

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+||+||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       262 ~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~  341 (481)
T PLN03034        262 VSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLL  341 (481)
T ss_pred             HcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+||+|++++ .+.+..+++.++||++||++||||+|++.|+++|.+|+||+||||||+||+++|+.||++|+++++++
T Consensus       342 lPvD~v~a~~~~~~~~~~~~~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~akTI~WNGPmGvFE~~~Fa~GT~~l~~aia~~  421 (481)
T PLN03034        342 LPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAEL  421 (481)
T ss_pred             CCceEEEecccCCCCCeEEeehhcCCCCCEEEecCHHHHHHHHHHHhhCCEEEEECCcccccCCcchHHHHHHHHHHHHh
Confidence            99999999876 33444566889999999999999999999999999999999999999999999999999999999997


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccCCcc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPF  218 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~~p~  218 (420)
                      ++.++ +||+||++   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+.+|+
T Consensus       422 ~~~~a-~sIvGGGDt~aAi~~~g~~~~~shiST--GGGA~Le~LeGk~LPgv~aL~~~~~~  479 (481)
T PLN03034        422 SGKGV-TTIIGGGDSVAAVEKVGVADVMSHIST--GGGASLELLEGKELPGVVALDEATPV  479 (481)
T ss_pred             hcCCC-eEEEcCcHHHHHHHHcCCccceeEEeC--cHHHHHHHHcCCCCcHHHHHhhcCCc
Confidence            64444 78888765   4457888888999999  89999999999999999999988764

>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.6e-62  Score=476.51  Aligned_cols=205  Identities=29%  Similarity=0.478  Sum_probs=187.3

Q ss_pred             CCCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         1 ~~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      ++++|+||+++|+|||||||||+||+||+++||+|||||+||||||+|+|++||+|++|.+.++.|++||+++++   +|
T Consensus       185 ~l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tFl~A~G~~vG~sl~E~~~~~~Ak~ll~k~~~---~I  261 (395)
T COG0126         185 ALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDGAKELLEKAKD---KI  261 (395)
T ss_pred             HhcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhCC---cE
Confidence            368999999999999999999999999999999999999999999999999999999999999999999998655   89


Q ss_pred             ecceeEEEecCCCCCc-eeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHh
Q 014711           81 LYPKDFWCTKIHHPNQ-VEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK  159 (420)
Q Consensus        81 ~lP~D~~~~~~~~~~~-~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~  159 (420)
                      +||+|++|++++.... ...+ . +||++||++||||+|++.|++.|..|+||+|||||||||+++|+.||.++++++++
T Consensus       262 ~lPvD~~v~~~f~~~~~~~~~-~-~i~~~~~~lDIGp~Ti~~~~~~i~~AktivwNGP~GVfE~~~Fa~GT~~v~~aia~  339 (395)
T COG0126         262 VLPVDVVVAKEFSRDAPATVK-L-EIPDDLMILDIGPKTIELFAEIIKGAKTIVWNGPMGVFEFENFAKGTEEVAKAIAK  339 (395)
T ss_pred             ECcceeEEccccccccccccc-c-CCCCCccccccCHHHHHHHHHHHhhCCEEEEeCCccceecchhhhhHHHHHHHHHh
Confidence            9999999999974433 3333 3 99999999999999999999999999999999999999999999999999999988


Q ss_pred             hhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccC
Q 014711          160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (420)
Q Consensus       160 ~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~  215 (420)
                      ++   ..+||+||++   ++..+|+.++++|+||  ||||+++||+|+.+|++++|.+.
T Consensus       340 ~~---~a~SiiGGGdt~aAi~~~G~~d~~shIST--GGGAsLe~leGk~LPgv~aL~~~  393 (395)
T COG0126         340 SS---GAFSIIGGGDTAAAIDKLGLADKISHIST--GGGASLEFLEGKELPGVEALEES  393 (395)
T ss_pred             cC---CCeEEECCcHHHHHHHHcCccccCceEec--CchHHHHHhcCCCcchHHHHhhc
Confidence            62   2588888875   4457889889999999  99999999999999999998764

>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate

Probab=100.00  E-value=7.2e-62  Score=484.25  Aligned_cols=209  Identities=27%  Similarity=0.533  Sum_probs=193.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|++++++++++|+
T Consensus       184 l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~sl~e~~~i~~a~~il~~a~~~~~~I~  263 (397)
T cd00318         184 LENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIV  263 (397)
T ss_pred             HcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHhHhcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCCC-CCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~~-~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+|++|++++. +.+..+++.++||++||++||||+|++.|+++|..|+||+||||||+||.++|+.||++|++++++.
T Consensus       264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~  343 (397)
T cd00318         264 LPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAEVIRKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAA  343 (397)
T ss_pred             CCceEEEeeccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCCcCccCCcccHHHHHHHHHHHHh
Confidence            999999998753 3444566889999999999999999999999999999999999999999999999999999999987


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~  213 (420)
                      +++++ +|++||++   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.
T Consensus       344 ~~~~a-~sivGGGdt~aa~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgi~aL~  396 (397)
T cd00318         344 TKAGA-FSIIGGGDTAAAAEKFGLADKISHVST--GGGASLELLEGKELPGVAALE  396 (397)
T ss_pred             ccCCC-EEEEeCcHHHHHHHHcCCCCCceEEcC--chHHHHHHHcCCCCchHHhhc
Confidence            64444 88888875   4456888888999999  999999999999999999886

This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.

>PLN02282 phosphoglycerate kinase

Probab=100.00  E-value=1.5e-61  Score=481.75  Aligned_cols=210  Identities=30%  Similarity=0.523  Sum_probs=194.0

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       187 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~  266 (401)
T PLN02282        187 VANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLL  266 (401)
T ss_pred             hcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEe
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCCC-CCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~~-~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+||+|++++. +.+..++++++||++||++||||+|++.|+++|..|+||+||||||+||+++|+.||++|++++++.
T Consensus       267 lPvD~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~  346 (401)
T PLN02282        267 LPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAEL  346 (401)
T ss_pred             CCceEEEecccCCCCCeEEeehhcCCCCCeeeccCHHHHHHHHHHHhhCCEEEEECCcCCccCcchhHHHHHHHHHHHHh
Confidence            999999998753 3344566889999999999999999999999999999999999999999999999999999999997


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      ++.++ +|++||++   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       347 t~~~a-~sivGGGdt~aA~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgi~aL~~  400 (401)
T PLN02282        347 SGKGV-TTIIGGGDSVAAVEKVGLADKMSHIST--GGGASLELLEGKPLPGVLALDD  400 (401)
T ss_pred             hcCCC-EEEEeCcHHHHHHHHcCCcCCceEEeC--chHHHHHHHcCCCcchHHHhhc
Confidence            64444 78888765   4457888888999999  8999999999999999999864

>PRK00073 pgk phosphoglycerate kinase; Provisional

Probab=100.00  E-value=1.2e-60  Score=474.28  Aligned_cols=206  Identities=28%  Similarity=0.509  Sum_probs=192.0

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+||+||||||.+|+||+++||+|++||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       180 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~  259 (389)
T PRK00073        180 LENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIP  259 (389)
T ss_pred             hcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCCCCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhhh
Q 014711           82 YPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVS  161 (420)
Q Consensus        82 lP~D~~~~~~~~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~~  161 (420)
                      ||+|++|++++.+.+..+++.++||++||++||||+|++.|+++|..|+||+||||||+||.++|+.||++|++++++.+
T Consensus       260 lPvD~vv~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~~  339 (389)
T PRK00073        260 LPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEST  339 (389)
T ss_pred             CCCeeEEeeccCCCceEEeEcccCCCCCeeeecCHHHHHHHHHHHhhCCEEEEECCCCccccccchHHHHHHHHHHHhcC
Confidence            99999999875444445678899999999999999999999999999999999999999999999999999999998853


Q ss_pred             cCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccc
Q 014711          162 QGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (420)
Q Consensus       162 ~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~  213 (420)
                          .+|++||++   ++..+|+.++++|+||  ||||+++||+|+.+|++++|.
T Consensus       340 ----a~sivGGGdt~aa~~~~g~~~~~shiST--GGGA~Le~LeGk~LPgv~aL~  388 (389)
T PRK00073        340 ----AFSIIGGGDTAAAVEKLGLADKFSHIST--GGGASLEFLEGKELPGVAALE  388 (389)
T ss_pred             ----CeEEEcCCHHHHHHHHcCCCCCccEEcC--CcHHHHHHHcCCCcchHHHhc
Confidence                378888774   4457888899999999  999999999999999999885

>PTZ00005 phosphoglycerate kinase; Provisional

Probab=100.00  E-value=3.6e-60  Score=474.03  Aligned_cols=210  Identities=25%  Similarity=0.532  Sum_probs=191.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHh-cCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a-~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      +++|+||+++|+||+||||||.+|+||+++||+|++||+||||||+| +|++||+|++|++.++.|++++++++++|++|
T Consensus       201 ~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I  280 (417)
T PTZ00005        201 LENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKI  280 (417)
T ss_pred             hcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEE
Confidence            57999999999999999999999999999999999999999999999 68999999999999999999999999999999


Q ss_pred             ecceeEEEecCCC-CCceeEe-cCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014711           81 LYPKDFWCTKIHH-PNQVEIF-PSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (420)
Q Consensus        81 ~lP~D~~~~~~~~-~~~~~~~-~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (420)
                      +||+|++|++++. +.+..++ +.++||++||++||||+|++.|+++|..|+||+||||||+||.++|+.||++|+++++
T Consensus       281 ~lPvD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akTV~wNGP~GvFE~~~F~~GT~~i~~aia  360 (417)
T PTZ00005        281 HLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVV  360 (417)
T ss_pred             eCCceEEEecccCCCCCeEEecCccCCCCCCEEeccCHHHHHHHHHHHhhCCEEEEECCCccccCCcchHHHHHHHHHHH
Confidence            9999999998753 3333344 5678999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      +.++.+ .+||+||++   ++..+|+.++++|+||  ||||+++||+|+.+|++++|.+
T Consensus       361 ~~t~~~-a~sivGGGdt~aAi~~~g~~~~~shvST--GGGA~Le~LeGk~LPgv~aL~~  416 (417)
T PTZ00005        361 KATEKG-AITIVGGGDTASLVEKTGAANKVSHVST--GGGASLELLEGKELPGVVALSN  416 (417)
T ss_pred             HhccCC-CEEEEeCcHHHHHHHHcCCCCCCceEcC--chHHHHHHHcCCCcchHHHhhc
Confidence            866443 488888764   4457888888999999  9999999999999999999864

>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.4e-60  Score=443.87  Aligned_cols=210  Identities=27%  Similarity=0.514  Sum_probs=193.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhc-CCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~-g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      +++|.|||++|+||+||+|||++|+||+++||.+||||+||||||+++ |++||+|++|+++.+.+++|+++|+++|++|
T Consensus       199 lenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMaftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i  278 (416)
T KOG1367|consen  199 LENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMAFTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRI  278 (416)
T ss_pred             HcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCceeehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEE
Confidence            689999999999999999999999999999999999999999999997 6999999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceeEecC-CCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014711           81 LYPKDFWCTKIH-HPNQVEIFPS-HGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (420)
Q Consensus        81 ~lP~D~~~~~~~-~~~~~~~~~~-~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (420)
                      +||+||++++.+ +++....++. +.||+|||+|||||+|++.|++.+.+++||+||||+|+||.+.|++||.+|.+++.
T Consensus       279 ~lPvDfv~adkf~~da~s~~~ta~~gIp~g~mgLD~GPes~k~fa~~v~~aKtIvWNGP~GvfE~~~Fa~GTeal~d~~v  358 (416)
T KOG1367|consen  279 LLPVDFVIADKFAEDANSKQVTAEEGIPDGWMGLDIGPESIKMFAEAVATAKTIVWNGPPGVFEFEKFAAGTEALMDALV  358 (416)
T ss_pred             EeeeeeeeeccccCccccceeccccCCCCCccccccChHHHHHHHHHHhhhhEEEecCCCcccchhhhhhhHHHHHHHHH
Confidence            999999999886 4444444444 47999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      +++.++. .+++||++   ++.++|.++++||+||  ||||++|.|+|+.+||+.+|..
T Consensus       359 ~~t~~G~-~tiiGGGDTata~~k~g~~dk~ShVST--GGGasLeLLeGK~LPGv~aLs~  414 (416)
T KOG1367|consen  359 KLTGKGV-TTIIGGGDTATACKKFGTEDKVSHVST--GGGASLELLEGKVLPGVDALSE  414 (416)
T ss_pred             HHhcCCc-EEEEcCCcHHHHHHHhCcccceeeeec--CCceehhhhcCCcCcchhhhcc
Confidence            9887765 67777653   5578999999999999  9999999999999999998865

>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

Probab=100.00  E-value=5.8e-58  Score=480.92  Aligned_cols=208  Identities=26%  Similarity=0.510  Sum_probs=192.6

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       183 l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~  262 (645)
T PRK13962        183 LANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLL  262 (645)
T ss_pred             HcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+|++|++++ .+.+..+++.++||++||++||||+|++.|++.+..|+||+||||||+||.++|+.||++|+++++..
T Consensus       263 lPvD~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~  342 (645)
T PRK13962        263 LPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFAKKIADAKTIVWNGPMGVFEFDNFAEGTRAVAEAVAES  342 (645)
T ss_pred             CCcEEEeecccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCCccccCCCchHHHHHHHHHHHhc
Confidence            99999999876 33444566889999999999999999999999999999999999999999999999999999999863


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccC
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~  215 (420)
                         + .+|++||++   ++..+|+.++++|+||  ||||+++||+|+.+|++++|.+.
T Consensus       343 ---~-~~svvGGGdt~aa~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgv~aL~~s  394 (645)
T PRK13962        343 ---G-AITIIGGGDSAAAVEKLGFADKMSHIST--GGGASLEFLEGKVLPGIACLLDK  394 (645)
T ss_pred             ---C-CeEEECchHHHHHHHHcCCccCceEEcC--ChHHHHHHHcCCccHHHHHHhhc
Confidence               2 488888875   4446788889999999  99999999999999999999654

>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2

Probab=100.00  E-value=3.9e-57  Score=450.42  Aligned_cols=197  Identities=28%  Similarity=0.533  Sum_probs=174.9

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+||+||||||++|+||+++||+|++||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       184 ~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~~e~~~i~~a~~ll~~~~~~g~~i~  263 (384)
T PF00162_consen  184 LENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSLVEEDLIEEAKELLEKAKDRGVKIV  263 (384)
T ss_dssp             HHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSSCHGGGHHHHHHHHHHHHHTT-EEE
T ss_pred             hcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccchhhhhHHHHHHHHHHHHhcCceEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+||+|++++ .+++.++++.++||++|+++||||+|++.|++.+..|+||+||||||+||.++|+.||++|++++++.
T Consensus       264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktv~wNGP~GvfE~~~F~~GT~~l~~aia~~  343 (384)
T PF00162_consen  264 LPVDFVVADEFSDGARVEVVPADEIPDGWMILDIGPKTIELFSEIIKKAKTVFWNGPMGVFEIENFAEGTRALAKAIAKS  343 (384)
T ss_dssp             --SEEEEESSSSTTSCEEEEETTGBCTTSEEEEE-HHHHHHHHHHHHT-SEEEEES-SS-TTSGGGCHHHHHHHHHHHHH
T ss_pred             EEEEEeehhcccCCCCcEeccccccCCCCeeeccCHHHHHHHHHHHhCCCeEEEECCcccCchhhhhHHHHHHHHHHHhc
Confidence            99999999986 44556677899999999999999999999999999999999999999999999999999999999987


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGR  204 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~  204 (420)
                      .    .++++||++   ++..+|+.++++|+||  ||||+++||+|+
T Consensus       344 ~----a~sivGGGdt~~a~~~~g~~~~~shvST--GGGA~L~~LeGk  384 (384)
T PF00162_consen  344 G----AFSIVGGGDTAAAIKKFGLADKFSHVST--GGGAFLEFLEGK  384 (384)
T ss_dssp             T----SEEEEESHHHHHHHHHTTGGGGSSEEES--SSHHHHHHHTTS
T ss_pred             C----CeEEEcccHHHHHHHhcCcccceeEEec--CcHHHHHHhcCC
Confidence            2    478888775   3446788889999999  999999999986

7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=100.00  E-value=5.6e-38  Score=289.33  Aligned_cols=188  Identities=26%  Similarity=0.508  Sum_probs=155.5

Q ss_pred             cccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhh
Q 014711          218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       218 ~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~  297 (420)
                      ..++|.+.|++ +.+++||||||+|.+++.+|+++|+.+|+|+|++...+..|.+++.+.+++|+.++++|+..++..++
T Consensus         6 ~~~~~~~~f~~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~   84 (195)
T PF02390_consen    6 EPLDWQEIFGN-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF   84 (195)
T ss_dssp             CTTCHHHHHTS-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred             CccCHHHHcCC-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence            35689999987 57899999999999999999999999999999999999999999999999999999999999877776


Q ss_pred             ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHc-CCceeEe-eccc
Q 014711          298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY-GKGKLVL-VQDE  375 (420)
Q Consensus       298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~-g~~~~~~-~~D~  375 (420)
                        +++++|.|+++|||||||++|+|||+++++|++.++++|+|||.|++.||++.|+++|++.+.+. +.+.... ..+ 
T Consensus        85 --~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~~-  161 (195)
T PF02390_consen   85 --PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESDD-  161 (195)
T ss_dssp             --TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TESS-
T ss_pred             --cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCcc-
Confidence              57999999999999999999999999999999999999999999999999999999999999994 5443211 112 


Q ss_pred             cccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014711          376 CDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  416 (420)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~  416 (420)
                          .++.   +.++..+.|+||++|+++|++||++.|+|+
T Consensus       162 ----~~~~---~~~~~~~~T~yE~k~~~~G~~i~~~~f~k~  195 (195)
T PF02390_consen  162 ----LHES---PFDDDYIPTKYERKWLAEGKPIYRLIFKKV  195 (195)
T ss_dssp             ----GGCS---CCCTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred             ----cccC---CCCCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence                1111   112368999999999999999999999985

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=100.00  E-value=5.7e-38  Score=293.98  Aligned_cols=190  Identities=26%  Similarity=0.362  Sum_probs=166.3

Q ss_pred             ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc
Q 014711          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~  298 (420)
                      ..+|.+.|+++..+++||||||+|.+++.+|+++|+.+|+|||++...+..|.+++.+.+++|+++++.||..+++.++ 
T Consensus        37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~-  115 (227)
T COG0220          37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI-  115 (227)
T ss_pred             cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC-
Confidence            3568889988656899999999999999999999999999999999999999999999999999999999999977665 


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecccccc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  378 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~  378 (420)
                       +++++|.|+++|||||||++|+|||++++.|+..+.+.|+|||.|+|+||++.|++++.....++.........|.   
T Consensus       116 -~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~---  191 (227)
T COG0220         116 -PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDL---  191 (227)
T ss_pred             -CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhcccccc---
Confidence             4679999999999999999999999999999999999999999999999999999996665655544444444442   


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          379 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       379 ~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                        +.  |....+.++.|+||+++.+.|++|+++.+++..
T Consensus       192 --~~--~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~  226 (227)
T COG0220         192 --HY--NLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK  226 (227)
T ss_pred             --cc--ccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence              21  233455689999999999999999999999864

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=100.00  E-value=4.4e-33  Score=257.06  Aligned_cols=185  Identities=22%  Similarity=0.388  Sum_probs=160.6

Q ss_pred             ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc
Q 014711          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~  298 (420)
                      +.+|.+.|++ +.+++||||||+|.++..+|+++|+.+|+|+|+++++++.|++++.+.+++|++++++|+.++++..+ 
T Consensus         6 ~~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-   83 (194)
T TIGR00091         6 KPDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-   83 (194)
T ss_pred             CCCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-
Confidence            4578888885 57899999999999999999999999999999999999999999999999999999999998754444 


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcC-CceeEeeccccc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKLVLVQDECD  377 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g-~~~~~~~~D~~~  377 (420)
                       +++++|.|+++|||||++++|+++|++++++++.++++|||||.|++.||+..|++++++.+.+++ |.......|   
T Consensus        84 -~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~---  159 (194)
T TIGR00091        84 -PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTD---  159 (194)
T ss_pred             -CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccc---
Confidence             356899999999999999999999999999999999999999999999999999999999999987 332222222   


Q ss_pred             cccCCCCCCCCCC---CCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          378 TKTNQGGWLGENS---FGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       378 ~~~~~~~~~~~~~---~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                             + ...+   ..+.|+||++|+++|++||+++++|+.
T Consensus       160 -------~-~~~~~~~~~~~T~~E~~~~~~g~~i~~~~~~~~~  194 (194)
T TIGR00091       160 -------L-NNSPLSRPRNMTEYEQRFERLGHPVFDLCFERLP  194 (194)
T ss_pred             -------c-CCCcccccCcCCHHHHHHHHCCCCeEEEEEEECC
Confidence                   1 1122   234799999999999999999999863

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=100.00  E-value=1.7e-31  Score=266.83  Aligned_cols=175  Identities=18%  Similarity=0.299  Sum_probs=154.8

Q ss_pred             cccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCe
Q 014711          224 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       224 ~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      +.|...+++++||||||+|.+++.+|+++|+.+|+|+|+++.+++.|.+++.+.+++|++++++|+..++ +.+  ++++
T Consensus       116 ~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll-~~~--~~~s  192 (390)
T PRK14121        116 DFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL-ELL--PSNS  192 (390)
T ss_pred             HHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh-hhC--CCCc
Confidence            3444446789999999999999999999999999999999999999999999999999999999998874 334  5889


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCC
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQG  383 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~  383 (420)
                      +|.|+++|||||+|++|  ||++++.++++++++|+|||.+++.||+..|++++++.+.+++......            
T Consensus       193 ~D~I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~------------  258 (390)
T PRK14121        193 VEKIFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI------------  258 (390)
T ss_pred             eeEEEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec------------
Confidence            99999999999999988  7999999999999999999999999999999999999998886543211            


Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          384 GWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       384 ~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                        ...++..+.|+||++|+++|++||++.+++.+
T Consensus       259 --~~~~~~~i~TkyE~r~~~~G~~Iy~l~~~~~~  290 (390)
T PRK14121        259 --KKNAQLEVSSKYEDRWKKQNKDIYDLRIYNLE  290 (390)
T ss_pred             --ccCCCCCCCCHHHHHHHHCCCCEEEEEEEeCC
Confidence              11244578899999999999999999999965

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.96  E-value=1e-29  Score=265.63  Aligned_cols=264  Identities=15%  Similarity=0.200  Sum_probs=186.6

Q ss_pred             cccCCcccHHHHHHHhcCCCeEEEeccce--EEEcCCCCchHHHHHHHHHhhhcCCCCeeEechhHHHHHhhcCCCccee
Q 014711          111 PVDIGPRSVEEITSTITKCKKVIWVGPVK--FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGL  188 (420)
Q Consensus       111 ~~DiGp~T~~~~~~~~~~~~~i~wnGp~G--~~e~~~f~~GT~~l~~~~a~~~~~~~~~~i~gg~~~~~~~~~~~~~~~~  188 (420)
                      .++-|+...+.|...+..+.++.  -|-|  ++|.. +++ ..++.+.+..   . + +..+.-  ...+.|. +.+-.+
T Consensus       237 AL~gg~dGl~~~~~il~~a~~~L--~~gG~l~lEig-~~q-~~~v~~~~~~---~-g-~~~~~~--~~D~~g~-~R~v~~  304 (506)
T PRK01544        237 ALFAEEDGLQAYFIIAENAKQFL--KPNGKIILEIG-FKQ-EEAVTQIFLD---H-G-YNIESV--YKDLQGH-SRVILI  304 (506)
T ss_pred             HhcCCccHHHHHHHHHHHHHHhc--cCCCEEEEEEC-Cch-HHHHHHHHHh---c-C-CCceEE--EecCCCC-ceEEEe
Confidence            57778888888888888777654  3434  55653 332 2233333222   1 1 111100  0001111 111111


Q ss_pred             eeecCCCeeeeeeccc-cCCCcccc-ccCCc-cccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChH
Q 014711          189 NMVESGSAVWEFLKGR-MLPGVSAL-DRAFP-FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGK  265 (420)
Q Consensus       189 st~~GGGa~le~l~g~-~lPgv~aL-~~~~p-~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~  265 (420)
                      +.. +=+-+.....|+ ..++++++ ...+| +.+++...|+. +++++||||||+|.+++.+|+.+|+.+|+|+|++..
T Consensus       305 ~~~-~~~rs~~rr~g~~~~~~q~~~~e~~~p~~~i~~eklf~~-~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~  382 (506)
T PRK01544        305 SPI-NLNRSYARRIGKSLSGVQQNLLDNELPKYLFSKEKLVNE-KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLN  382 (506)
T ss_pred             ccc-cCCcceeccCCCCCCHHHHHHHHhhhhhhCCCHHHhCCC-CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHH
Confidence            110 111233334443 33444444 44455 45566666765 689999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          266 LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       266 ~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      .+..|.+++.+.+++|+++++.|+..+ ...+  +++++|.|+++|||||||++|+|||+++++|++.+++.|||||.|+
T Consensus       383 ~~~~~~~~~~~~~l~N~~~~~~~~~~~-~~~~--~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~  459 (506)
T PRK01544        383 GVANVLKLAGEQNITNFLLFPNNLDLI-LNDL--PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV  459 (506)
T ss_pred             HHHHHHHHHHHcCCCeEEEEcCCHHHH-HHhc--CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence            999999999999999999999998765 4455  5889999999999999999999999999999999999999999999


Q ss_pred             EEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 014711          346 LQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHV  401 (420)
Q Consensus       346 ~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~~~~~~~T~~E~~~  401 (420)
                      +.||+++|++++++.+.+++.+.. ...+         .|+...+..+.|+||+|.
T Consensus       460 ~~TD~~~y~~~~~~~~~~~~~f~~-~~~~---------~~~~~~~~~~~T~yE~k~  505 (506)
T PRK01544        460 FASDIENYFYEAIELIQQNGNFEI-INKN---------DYLKPHDNYVITKYHQKA  505 (506)
T ss_pred             EEcCCHHHHHHHHHHHHhCCCeEe-cccc---------cccCCCCCCCCchhccCc
Confidence            999999999999999999874432 1222         233345678999999974

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.93  E-value=3.5e-25  Score=205.66  Aligned_cols=172  Identities=22%  Similarity=0.371  Sum_probs=151.1

Q ss_pred             cccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcCh-hhhhhhh
Q 014711          218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA-TSTFRSI  296 (420)
Q Consensus       218 ~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da-~~~~~~~  296 (420)
                      ....|...|.. ++..|||+|||+|.++..+++.+|..+|+|+|+|+++++.|++++...++.|+.++++|+ ..+ +..
T Consensus        29 ~~~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l-~~~  106 (202)
T PRK00121         29 APLDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL-LDM  106 (202)
T ss_pred             CCCCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH-HHH
Confidence            56788888887 688999999999999999999999999999999999999999999888888999999999 544 333


Q ss_pred             hccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecccc
Q 014711          297 VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEC  376 (420)
Q Consensus       297 ~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~  376 (420)
                      +  +++++|.|+++||+||.+..|++++...+.+++++.++|||||.|++.+++..+..++++.++++|+... +. |  
T Consensus       107 ~--~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~-~~-~--  180 (202)
T PRK00121        107 F--PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV-SE-A--  180 (202)
T ss_pred             c--CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc-cc-c--
Confidence            3  4778999999999999888888888778899999999999999999999999999999999999997642 21 2  


Q ss_pred             ccccCCCCCCCCCCCCCCCHHHHHHHH
Q 014711          377 DTKTNQGGWLGENSFGVRSDWEQHVID  403 (420)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~T~~E~~~~~  403 (420)
                            .+|...++..+.|+||++|+.
T Consensus       181 ------~~~~~~~~~~~~~~~~~~~~~  201 (202)
T PRK00121        181 ------GDYVPRPEGRPMTEYERKGLR  201 (202)
T ss_pred             ------hhhcccCccCCCcHHHHHhhc
Confidence                  356677899999999999975

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=99.80  E-value=1.3e-19  Score=162.77  Aligned_cols=192  Identities=21%  Similarity=0.342  Sum_probs=155.3

Q ss_pred             cccccccccCC---C--CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-------CCcEEEE
Q 014711          218 FDIDWSAAYHD---P--AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-------ITNGYFI  285 (420)
Q Consensus       218 ~~~~~~~~f~~---~--~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-------l~nv~~~  285 (420)
                      ...+|+..|+.   +  ...-+.|||||.|.+++.|+..||+..++|+||.-+..+..+++++...       +.|+.++
T Consensus        43 ~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vl  122 (249)
T KOG3115|consen   43 QEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVL  122 (249)
T ss_pred             HhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceee
Confidence            45678876643   1  2367999999999999999999999999999999999999988887654       7899999


Q ss_pred             EcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcC
Q 014711          286 ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG  365 (420)
Q Consensus       286 ~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g  365 (420)
                      +.++..+++++|  ..++++.+++.||||++|.+.++.|++...++.++.-+|++||.++..||+....+||...+++++
T Consensus       123 r~namk~lpn~f--~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp  200 (249)
T KOG3115|consen  123 RTNAMKFLPNFF--EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP  200 (249)
T ss_pred             eccchhhccchh--hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence            999999988887  578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEeeccccccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014711          366 KGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  418 (420)
Q Consensus       366 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~~  418 (420)
                      .+.....++     +.+.+  ...-..-.|+.-.+..++|...|...|+++..
T Consensus       201 lfe~lt~ee-----~~~d~--~v~~~~~~teeg~kv~r~~g~~f~a~f~r~~~  246 (249)
T KOG3115|consen  201 LFERLTEEE-----EENDP--CVELLSNATEEGKKVARNGGKKFVAVFRRIPN  246 (249)
T ss_pred             Hhhhcchhh-----hcCCc--chhhhhhhhhhcccccccCCceeeeeeeeccC
Confidence            775321111     00000  00001223555566677777888888888765

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.69  E-value=1.6e-16  Score=149.85  Aligned_cols=105  Identities=17%  Similarity=0.276  Sum_probs=91.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||||||||.++..+++..+..+++|+|+|+.|++.|++++.+.+..|++|+++||+++     |+++++||.+++
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-----Pf~D~sFD~vt~  125 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL-----PFPDNSFDAVTI  125 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-----CCCCCccCEEEe
Confidence            478999999999999999999999999999999999999999999998888899999999987     447999999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|.--+..+        .+..|++++|+|||||++.+.
T Consensus       126 ~fglrnv~d--------~~~aL~E~~RVlKpgG~~~vl  155 (238)
T COG2226         126 SFGLRNVTD--------IDKALKEMYRVLKPGGRLLVL  155 (238)
T ss_pred             eehhhcCCC--------HHHHHHHHHHhhcCCeEEEEE
Confidence            763322111        148999999999999987763

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.62  E-value=4.5e-15  Score=123.80  Aligned_cols=108  Identities=18%  Similarity=0.260  Sum_probs=85.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +.+|||||||+|.++..+++++|..+++|+|+|+.+++.|++++.+.+. .|++++++|+ .....    ....||.|++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~----~~~~~D~v~~   76 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD----FLEPFDLVIC   76 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT----TSSCEEEEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc----cCCCCCEEEE
Confidence            5789999999999999999999999999999999999999999965554 6899999999 32111    3557999998


Q ss_pred             eC-CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .. .-.+  -.+.   -...++++.+.+.|+|||+|++.+
T Consensus        77 ~~~~~~~--~~~~---~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   77 SGFTLHF--LLPL---DERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             CSGSGGG--CCHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcccc--ccch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence            75 1111  0111   112478999999999999999865

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.62  E-value=1.7e-15  Score=143.49  Aligned_cols=105  Identities=16%  Similarity=0.269  Sum_probs=77.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||+|||+|..+..++++ .|+..++|+|+|+.|++.|++++...+..|+.++++|+.++     |+++++||.|+
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-----p~~d~sfD~v~  121 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-----PFPDNSFDAVT  121 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-----cCCCCceeEEE
Confidence            4679999999999999999988 47789999999999999999999998888999999999987     33689999999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +.|--....+        ..+.+++++|+|||||++.+.
T Consensus       122 ~~fglrn~~d--------~~~~l~E~~RVLkPGG~l~il  152 (233)
T PF01209_consen  122 CSFGLRNFPD--------RERALREMYRVLKPGGRLVIL  152 (233)
T ss_dssp             EES-GGG-SS--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHhhHHhhCC--------HHHHHHHHHHHcCCCeEEEEe
Confidence            8762111100        137899999999999998764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.60  E-value=2e-14  Score=131.75  Aligned_cols=120  Identities=20%  Similarity=0.189  Sum_probs=101.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||||||+|..++.+++..|+.+|+|+|+|+.+++.|++++++.+++|++++++|+.++     + .+++||.|+++
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~-----~-~~~~fDlV~~~  119 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF-----G-QEEKFDVVTSR  119 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC-----C-CCCCccEEEEc
Confidence            67899999999999999999999999999999999999999999999998999999999875     1 25689999986


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      .-.+            -+.+++.+++.|||||+|++.. ...+...+.+..+.+|+...
T Consensus       120 ~~~~------------~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~~~~~~  165 (187)
T PRK00107        120 AVAS------------LSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKALGGKVE  165 (187)
T ss_pred             cccC------------HHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhcCceEe
Confidence            3111            1479999999999999999874 44566667777777888754

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.58  E-value=2.3e-14  Score=129.43  Aligned_cols=110  Identities=19%  Similarity=0.335  Sum_probs=90.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ....+||+|||+|.+++.+++..|+.+++++|+++.+++.|++++..+++.++++++.|..+..      .+.+||.|++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~------~~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL------PDGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC------CTTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc------cccceeEEEE
Confidence            3678999999999999999999999999999999999999999999999988999999997652      3689999999


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      |  .|+....+.. ..+..+++++..+.|||||.|++..
T Consensus       105 N--PP~~~~~~~~-~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen  105 N--PPFHAGGDDG-LDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             -----SBTTSHCH-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--cchhcccccc-hhhHHHHHHHHHHhccCCCEEEEEe
Confidence            8  4443333211 2234689999999999999997765

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.57  E-value=3.7e-14  Score=125.46  Aligned_cols=109  Identities=15%  Similarity=0.297  Sum_probs=88.6

Q ss_pred             CCCEEEEEcCCccHHHHHHH-HhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA-~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.++..++ +.+|..+++|+|+|+.+++.|++++.+.+++|++|.++|+.++ +..+   +..||.|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~---~~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQEL---EEKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCS---STTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-cccc---CCCeeEEE
Confidence            46889999999999999999 5588999999999999999999999999999999999999985 3212   27899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      +..+-.+...        ...+++.+.+.|+++|.+++..-.
T Consensus        79 ~~~~l~~~~~--------~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHFPD--------PEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGTSH--------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhccC--------HHHHHHHHHHHcCCCcEEEEEECC
Confidence            8733221110        137899999999999999986533

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.57  E-value=9.8e-14  Score=127.11  Aligned_cols=123  Identities=19%  Similarity=0.201  Sum_probs=100.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.+++.+++++|+.+++|+|+|+.+++.|++++.+.++.+++++++|+...       .+.++|.|++
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-------~~~~~D~v~~  103 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-------LPGKADAIFI  103 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-------cCcCCCEEEE
Confidence            467899999999999999999999999999999999999999999888888899999998432       2457999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ......           -+++++.+.+.|+|||++++..-......++.+.++++|+...+
T Consensus       104 ~~~~~~-----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~  153 (187)
T PRK08287        104 GGSGGN-----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELD  153 (187)
T ss_pred             CCCccC-----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcce
Confidence            643211           13688999999999999988642344456788889999986544

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.55  E-value=2.2e-13  Score=125.78  Aligned_cols=121  Identities=17%  Similarity=0.218  Sum_probs=95.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.++..+++..|+..++|+|+|+.+++.+++++.+.++.|++++++|+.+.++..    ...+|.+++
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~----~~~~d~v~~  115 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL----APAPDRVCI  115 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC----CCCCCEEEE
Confidence            4678999999999999999988899999999999999999999999989889999999997643221    223466666


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  366 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~  366 (420)
                      ....++            ..+++.+.+.|+|||+|++.+..........+.+++.+.
T Consensus       116 ~~~~~~------------~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~  160 (196)
T PRK07402        116 EGGRPI------------KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA  160 (196)
T ss_pred             ECCcCH------------HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence            432221            478999999999999999987655555556667766543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.55  E-value=8.2e-14  Score=127.20  Aligned_cols=120  Identities=22%  Similarity=0.217  Sum_probs=95.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.++||+|||+|.+++.+|...|+.+++|+|+|+.+++.+++++++.++.|++++++|+.++.      .+++||.|+++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~------~~~~fD~I~s~  116 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ------HEEQFDVITSR  116 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc------ccCCccEEEeh
Confidence            678999999999999999999999999999999999999999999899889999999998751      35689999875


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHH---cCCcee
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE---YGKGKL  369 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~---~g~~~~  369 (420)
                      .   +    +.     -+.+++.+.+.|+|||.+++.... ....++....++   .|+..+
T Consensus       117 ~---~----~~-----~~~~~~~~~~~LkpgG~lvi~~~~-~~~~~~~~~~e~~~~~~~~~~  165 (181)
T TIGR00138       117 A---L----AS-----LNVLLELTLNLLKVGGYFLAYKGK-KYLDEIEEAKRKCQVLGVEPL  165 (181)
T ss_pred             h---h----hC-----HHHHHHHHHHhcCCCCEEEEEcCC-CcHHHHHHHHHhhhhcCceEe
Confidence            2   1    10     136888899999999999987543 333444444444   565543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.54  E-value=1.6e-13  Score=130.81  Aligned_cols=135  Identities=19%  Similarity=0.309  Sum_probs=107.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +..|||+|||+|.++..+++.+|+.+++|+|+++.+++.|++++...+++|+.++++|+.+.+      .++++|.|+++
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD~Vi~n  161 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL------PGGKFDLIVSN  161 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC------cCCceeEEEEC
Confidence            468999999999999999999999999999999999999999999889889999999987632      36789999987


Q ss_pred             CCCCCCCCcc------------hhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          311 CPNPDFNRPE------------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       311 fpdp~~k~~~------------~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      .  |+.....            +...+        ....+++.+.+.|+|||.+++.+.+. ..+.+.+.+.++|+..+.
T Consensus       162 p--Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-~~~~~~~~l~~~gf~~v~  238 (251)
T TIGR03534       162 P--PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-QGEAVRALFEAAGFADVE  238 (251)
T ss_pred             C--CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-HHHHHHHHHHhCCCCceE
Confidence            3  3322110            01111        12478899999999999999987553 456788889999988766


Q ss_pred             eecc
Q 014711          371 LVQD  374 (420)
Q Consensus       371 ~~~D  374 (420)
                      +..|
T Consensus       239 ~~~d  242 (251)
T TIGR03534       239 TRKD  242 (251)
T ss_pred             EEeC
Confidence            6666

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.54  E-value=1.5e-13  Score=125.10  Aligned_cols=130  Identities=19%  Similarity=0.238  Sum_probs=100.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++..+  +++|+|+|+.+++.+++++...+. +++++++|+.+.       ...+||.|++
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------~~~~fD~Vi~   88 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG-------VRGKFDVILF   88 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-------cCCcccEEEE
Confidence            356799999999999999999876  899999999999999999987775 689999998664       2458999988


Q ss_pred             eCCCCCCCCcchh---------------hhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHR---------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k---------------~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +  .|++......               .+....++++++.++|||||.+++.+.......++.+.+++.||....+
T Consensus        89 n--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~  163 (179)
T TIGR00537        89 N--PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV  163 (179)
T ss_pred             C--CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence            7  3443221100               1122468999999999999999987654443567888999999876543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.3e-13  Score=134.07  Aligned_cols=132  Identities=17%  Similarity=0.333  Sum_probs=106.3

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  312 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp  312 (420)
                      .|||+|||||++++.+|++.|+++|+|+|+|+.+++.|++|+..+++.|+.++++|...-       ..+.||.|.+|  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-------~~~~fDlIVsN--  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-------LRGKFDLIVSN--  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------cCCceeEEEeC--
Confidence            799999999999999999999999999999999999999999999987888888877553       24589999998  


Q ss_pred             CCCCCCc-----------chhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCC-ceeEee
Q 014711          313 NPDFNRP-----------EHRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK-GKLVLV  372 (420)
Q Consensus       313 dp~~k~~-----------~~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~-~~~~~~  372 (420)
                      .|+....           .+...+        +..+++..+.+.|+|||.+.++++. .+.+.+.+.+.+.++ ..+...
T Consensus       184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~q~~~v~~~~~~~~~~~~v~~~  262 (280)
T COG2890         184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-TQGEAVKALFEDTGFFEIVETL  262 (280)
T ss_pred             CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-CcHHHHHHHHHhcCCceEEEEE
Confidence            5654333           122122        3478999999999999999999864 346779999999994 434444


Q ss_pred             cc
Q 014711          373 QD  374 (420)
Q Consensus       373 ~D  374 (420)
                      +|
T Consensus       263 ~d  264 (280)
T COG2890         263 KD  264 (280)
T ss_pred             ec
Confidence            44

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.53  E-value=1.5e-13  Score=129.71  Aligned_cols=106  Identities=15%  Similarity=0.210  Sum_probs=88.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|++++...++.|+.++++|+.++ +  +  +++++|.|+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~--~--~~~~fD~V~  119 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-P--F--DDNSFDYVT  119 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-C--C--CCCCccEEE
Confidence            46799999999999999999885 6789999999999999999999888888999999999775 1  2  467899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +.+.-.+..+        ..++++++.++|+|||++++..
T Consensus       120 ~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       120 IGFGLRNVPD--------YMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             EecccccCCC--------HHHHHHHHHHHcCcCeEEEEEE
Confidence            8754333221        1378999999999999998764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.53  E-value=3.3e-13  Score=121.52  Aligned_cols=121  Identities=15%  Similarity=0.170  Sum_probs=105.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+++|||||||..++++|...|..++++||.++++++..++|+++.+.+|+.++.+||.+.+++    .+ ++|.+|+
T Consensus        34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~----~~-~~daiFI  108 (187)
T COG2242          34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD----LP-SPDAIFI  108 (187)
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC----CC-CCCEEEE
Confidence            478999999999999999998899999999999999999999999999999999999999877531    22 7999999


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                      .-.-.            .+.+|+.+...|||||++++..-..+....+.+.++++|++
T Consensus       109 GGg~~------------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242         109 GGGGN------------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             CCCCC------------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence            74322            14899999999999999999766666666788999999984

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.53  E-value=1.9e-13  Score=133.52  Aligned_cols=127  Identities=10%  Similarity=0.178  Sum_probs=101.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ..+|||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++|+..+++. ++.++++|+.+.+      ++.+||.|++
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~------~~~~fD~Iv~  195 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL------PGRKYDLIVS  195 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc------CCCCccEEEE
Confidence            46899999999999999999999999999999999999999999998885 6999999986532      3457999998


Q ss_pred             eCCCCCCCCcc-----------hhhh--------hhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          310 QCPNPDFNRPE-----------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       310 ~fpdp~~k~~~-----------~k~R--------l~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                      +  .|+.....           +...        -....+++.+.+.|+|||+++++++. .. +.+.+.+.+++|.
T Consensus       196 N--PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~-~~v~~~~~~~~~~  268 (284)
T TIGR03533       196 N--PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM-EALEEAYPDVPFT  268 (284)
T ss_pred             C--CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH-HHHHHHHHhCCCc
Confidence            7  44432111           1111        12357899999999999999999976 33 5788888888765

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.52  E-value=2.3e-13  Score=132.99  Aligned_cols=134  Identities=13%  Similarity=0.225  Sum_probs=105.0

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      .+|||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++++..+++.+ +.|+++|+.+.+      ++..||.|+++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~------~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL------AGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC------cCCCccEEEEC
Confidence            58999999999999999999999999999999999999999999888865 999999986532      23479999887


Q ss_pred             CCCCCCCCcc-----------hhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHH-HcCCceeE
Q 014711          311 CPNPDFNRPE-----------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL-EYGKGKLV  370 (420)
Q Consensus       311 fpdp~~k~~~-----------~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~-~~g~~~~~  370 (420)
                        .|+....+           +...+        ....++..+.+.|+|||++++++.+ .+.+.+.+.+. +.+|....
T Consensus       190 --PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~~~~~~~~~~~~~~~  266 (284)
T TIGR00536       190 --PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSLKELLRIKFTWYDVE  266 (284)
T ss_pred             --CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHHhcCCCceeE
Confidence              44432221           11111        3467899999999999999999865 44566777777 46776666


Q ss_pred             eecc
Q 014711          371 LVQD  374 (420)
Q Consensus       371 ~~~D  374 (420)
                      +.+|
T Consensus       267 ~~~D  270 (284)
T TIGR00536       267 NGRD  270 (284)
T ss_pred             EecC
Confidence            6667

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.52  E-value=3e-13  Score=136.72  Aligned_cols=136  Identities=18%  Similarity=0.218  Sum_probs=108.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.++||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++|+...+. |++++++|+.+..   ++ ...+||.|++|
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~---l~-~~~~FDLIVSN  326 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTD---MP-SEGKWDIIVSN  326 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccc---cc-cCCCccEEEEC
Confidence            4689999999999999999999999999999999999999999988775 8999999986531   11 24579999987


Q ss_pred             CCCCCCCCcc-----------hhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          311 CPNPDFNRPE-----------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       311 fpdp~~k~~~-----------~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                        .|+.....           +...+        +..++++.+.+.|+|||.++++++. ++.+.+.+.+++.||..+.+
T Consensus       327 --PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~Gf~~v~v  403 (423)
T PRK14966        327 --PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENGFSGVET  403 (423)
T ss_pred             --CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCCCcEEEE
Confidence              34432211           11112        2357888899999999999999865 56788999999999887777


Q ss_pred             ecc
Q 014711          372 VQD  374 (420)
Q Consensus       372 ~~D  374 (420)
                      .+|
T Consensus       404 ~kD  406 (423)
T PRK14966        404 LPD  406 (423)
T ss_pred             EEc
Confidence            777

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=3.1e-13  Score=126.86  Aligned_cols=123  Identities=20%  Similarity=0.233  Sum_probs=112.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|+|.|.|||.++..||.. .|..+++.+|+.++.++.|++|+.+.++.| +.+..+|+.+..      .+..||.|
T Consensus        94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~------~~~~vDav  167 (256)
T COG2519          94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI------DEEDVDAV  167 (256)
T ss_pred             CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc------cccccCEE
Confidence            4789999999999999999975 788999999999999999999999999987 999999998763      24489999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ++..||||             ++++.+.+.|||||.+.+-+..-++.+...+.++++||...++
T Consensus       168 ~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~  218 (256)
T COG2519         168 FLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA  218 (256)
T ss_pred             EEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence            99999999             9999999999999999999988889999999999999876544

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.52  E-value=1.5e-13  Score=132.57  Aligned_cols=105  Identities=15%  Similarity=0.152  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHH---hCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQL---SGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~---~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||+|||+|.++..++++. |+.+++|+|+|++|++.|+++...   ....|++++++|+.++     ++++++||
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-----p~~~~sfD  147 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-----PFDDCYFD  147 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-----CCCCCCEe
Confidence            36789999999999999999884 678999999999999999887542   2356899999999876     23578999


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|++.+.-.+..+  +      ..++++++++|||||+|++.
T Consensus       148 ~V~~~~~l~~~~d--~------~~~l~ei~rvLkpGG~l~i~  181 (261)
T PLN02233        148 AITMGYGLRNVVD--R------LKAMQEMYRVLKPGSRVSIL  181 (261)
T ss_pred             EEEEecccccCCC--H------HHHHHHHHHHcCcCcEEEEE
Confidence            9988654332211  1      37999999999999999885

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.51  E-value=2.2e-13  Score=130.94  Aligned_cols=98  Identities=17%  Similarity=0.099  Sum_probs=82.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++.+|+.+++|+|+|+.|++.|+++       ++.++++|+.++.      ++++||.|++
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~------~~~~fD~v~~   95 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK------PKPDTDVVVS   95 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC------CCCCceEEEE
Confidence            46889999999999999999999999999999999999998652       5789999997651      3578999999


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++.-.|..+  +      ..+++++++.|||||++.+..
T Consensus        96 ~~~l~~~~d--~------~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         96 NAALQWVPE--H------ADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             ehhhhhCCC--H------HHHHHHHHHhCCCCcEEEEEc
Confidence            865555322  1      378999999999999999874

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.51  E-value=3.6e-13  Score=127.23  Aligned_cols=135  Identities=16%  Similarity=0.287  Sum_probs=109.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ..+|||+|||+|..++.+|++.++..++|+|+++.+.+.|+++.+.+++. +++++++|+.++... .  ...+||.|++
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~-~--~~~~fD~Ii~  121 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA-L--VFASFDLIIC  121 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-c--cccccCEEEe
Confidence            68899999999999999999988899999999999999999999988875 699999999998532 2  2447999999


Q ss_pred             eCCCCCCCCcch----hh--------hhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEH----RW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~----k~--------Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      |  .|+++....    ..        .+.-.++++...++|||||++.+..-.+. ..++.+.+.+++|....+
T Consensus       122 N--PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er-l~ei~~~l~~~~~~~k~i  192 (248)
T COG4123         122 N--PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER-LAEIIELLKSYNLEPKRI  192 (248)
T ss_pred             C--CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH-HHHHHHHHHhcCCCceEE
Confidence            8  666554322    11        12237999999999999999999885444 556888999988876544

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=5.9e-14  Score=112.61  Aligned_cols=95  Identities=16%  Similarity=0.288  Sum_probs=75.3

Q ss_pred             EEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCC
Q 014711          235 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  314 (420)
Q Consensus       235 LDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp  314 (420)
                      ||+|||+|..+..++++ +..+++|+|+|+++++.++++....   ++.+.++|+.++     ++++++||.|++...-.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l-----~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDL-----PFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSS-----SS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhC-----cccccccccccccccee
Confidence            89999999999999998 8999999999999999999987543   466999999887     33689999998874333


Q ss_pred             CCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          315 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       315 ~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      |.  .      -...+++++.|+|||||+++|
T Consensus        72 ~~--~------~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   72 HL--E------DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GS--S------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ec--c------CHHHHHHHHHHHcCcCeEEeC
Confidence            22  1      114899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.50  E-value=3.3e-13  Score=114.10  Aligned_cols=103  Identities=18%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.++||+|||+|.++..+++++|+.+|+|+|+|+.+++.+++++...++.++.++..|+...++.    ...++|.|++.
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~v~~~   95 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED----SLPEPDRVFIG   95 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh----hcCCCCEEEEC
Confidence            56899999999999999999999999999999999999999999888888999999998754221    24589999886


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .+...           ..++++.+.+.|+|||+|++..
T Consensus        96 ~~~~~-----------~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        96 GSGGL-----------LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             Ccchh-----------HHHHHHHHHHHcCCCCEEEEEe
Confidence            42211           1389999999999999999853

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.49  E-value=6.5e-13  Score=127.43  Aligned_cols=131  Identities=18%  Similarity=0.256  Sum_probs=101.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ..++||+|||+|.+++.+++..|..+++|+|+|+.+++.|++|+..++   ++++++|+.+.++...   .+.||.|+++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~---~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTAL---RGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhc---CCCEeEEEEC
Confidence            358999999999999999999999999999999999999999997765   4789999876532211   3579999887


Q ss_pred             CCCCCCCCc------------chhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          311 CPNPDFNRP------------EHRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       311 fpdp~~k~~------------~~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                        .|+....            .++..+        +...+++.+.+.|+|||.+++.+... +...+.+.++++++....
T Consensus       161 --PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-~~~~v~~~l~~~g~~~~~  237 (251)
T TIGR03704       161 --APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-QAPLAVEAFARAGLIARV  237 (251)
T ss_pred             --CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc-hHHHHHHHHHHCCCCcee
Confidence              4443211            011111        23588899999999999999998764 467799999999987643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.49  E-value=4.9e-13  Score=112.42  Aligned_cols=111  Identities=24%  Similarity=0.330  Sum_probs=88.8

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      .+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|++++...++ .+++++++|+.+.. ..+  .+.++|.|+.+
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~--~~~~~D~Iv~n   77 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP-EPL--PDGKFDLIVTN   77 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH-HTC--TTT-EEEEEE-
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch-hhc--cCceeEEEEEC
Confidence            579999999999999999997 79999999999999999999999887 57999999998874 223  47899999998


Q ss_pred             CCCCCCCCcc--hhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          311 CPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       311 fpdp~~k~~~--~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                        .||....+  ...+-....+++++.+.|+|||.+.+.+
T Consensus        78 --pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   78 --PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             ---STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence              55543211  1112244699999999999999999876

...

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.48  E-value=5.5e-13  Score=134.35  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=92.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC---CcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI---TNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l---~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ..+|||+|||+|.+++.+++++|+.+++++|+|+.+++.|+++++.++.   .+++++..|+...+      .+.+||.|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~------~~~~fDlI  302 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV------EPFRFNAV  302 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC------CCCCEEEE
Confidence            3589999999999999999999999999999999999999999987764   37899999986531      35689999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HHHHHHHHHH
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ  360 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~~~~~~~~~  360 (420)
                      ++|  .|++...... .-+..++++.+.++|+|||.|++..+. ..|...+.+.
T Consensus       303 lsN--PPfh~~~~~~-~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~  353 (378)
T PRK15001        303 LCN--PPFHQQHALT-DNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI  353 (378)
T ss_pred             EEC--cCcccCccCC-HHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence            997  4443221111 112347899999999999999998642 4454444443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.48  E-value=1.4e-12  Score=120.58  Aligned_cols=123  Identities=14%  Similarity=0.209  Sum_probs=100.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+..+||+|||+|.+++.+|+. .|..+++++|+++.+++.|++++...+ ..|+.++++|+.+.++.    .++.+|.|
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D~V  115 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFDRI  115 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCCEE
Confidence            4679999999999999999987 467899999999999999999999888 46899999999875432    24679999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                      ++......           ...+++.+.+.|+|||++++.+-.......+.+.++++|+.
T Consensus       116 ~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~  164 (198)
T PRK00377        116 FIGGGSEK-----------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN  164 (198)
T ss_pred             EECCCccc-----------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence            88532211           13789999999999999998655555667788889999974

>PLN02244 tocopherol O-methyltransferase

Probab=99.47  E-value=3.9e-13  Score=134.60  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=87.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||||||+|.++..|++.+ +.+++|+|+|+.+++.|++++...++. +++|+++|+.++     ++++++||.|+
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~FD~V~  191 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-----PFEDGQFDLVW  191 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-----CCCCCCccEEE
Confidence            46789999999999999999987 789999999999999999999888874 799999999875     22578999998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+..+        ...+++++.++|||||.|++.+
T Consensus       192 s~~~~~h~~d--------~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        192 SMESGEHMPD--------KRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             ECCchhccCC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence            8644333221        1379999999999999999864

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=1.2e-12  Score=129.22  Aligned_cols=126  Identities=11%  Similarity=0.217  Sum_probs=99.0

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ..|||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++++..+++. ++.++++|+.+.+      ++.+||.|+++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l------~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL------PGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC------CCCCccEEEEC
Confidence            5899999999999999999999999999999999999999999998875 5999999986542      24579999887


Q ss_pred             CCCCCCCCcc-----------hhhh--------hhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          311 CPNPDFNRPE-----------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       311 fpdp~~k~~~-----------~k~R--------l~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                        .|+.....           +...        -+...+++.+.+.|+|||.+++.+++..  +.+.+.+.++++.
T Consensus       209 --PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~--~~~~~~~~~~~~~  280 (307)
T PRK11805        209 --PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR--VHLEEAYPDVPFT  280 (307)
T ss_pred             --CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHhhCCCE
Confidence              34422111           1100        1235789999999999999999987642  3477777776643

>TIGR00740 methyltransferase, putative

Probab=99.46  E-value=1e-12  Score=125.04  Aligned_cols=105  Identities=14%  Similarity=0.237  Sum_probs=84.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~  306 (420)
                      ++.+|||||||+|.++..++++  +|+++++|+|+|+.|++.|++++...+. .+++++++|+.++.       ...+|.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~d~  125 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-------IKNASM  125 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-------CCCCCE
Confidence            4678999999999999999987  4899999999999999999999877654 47999999998761       234788


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |++.+.-.|.....      ...+++++++.|||||.|++.
T Consensus       126 v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       126 VILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             EeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEEe
Confidence            87776544422111      137999999999999999986

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.46  E-value=5.8e-13  Score=127.47  Aligned_cols=134  Identities=14%  Similarity=0.220  Sum_probs=96.4

Q ss_pred             eeeeeccccCCCccccccCCccccccccccCCCCCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHh
Q 014711          197 VWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSL  274 (420)
Q Consensus       197 ~le~l~g~~lPgv~aL~~~~p~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~  274 (420)
                      .+..+..+..|+++.+.....   .+...+.. ++.+|||||||+|..+..+++.  +|+.+++|+|+|+.|++.|++++
T Consensus        27 ~yd~~~~~~~p~y~~~~~~~~---~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~  102 (247)
T PRK15451         27 VFPDMIQRSVPGYSNIISMIG---MLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI  102 (247)
T ss_pred             hhhhHHHhcCCChHHHHHHHH---HHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHH
Confidence            344555667888765443321   11122222 4678999999999999999884  68999999999999999999999


Q ss_pred             HHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          275 QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       275 ~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ...+.. +++++++|+.++       +...+|.|++++.-.+....      -...+++++++.|||||.|++.
T Consensus       103 ~~~~~~~~v~~~~~d~~~~-------~~~~~D~vv~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        103 DAYKAPTPVDVIEGDIRDI-------AIENASMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             HhcCCCCCeEEEeCChhhC-------CCCCCCEEehhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence            887765 799999999775       12347887765432221110      1247899999999999999885

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.46  E-value=1.3e-12  Score=137.12  Aligned_cols=136  Identities=15%  Similarity=0.201  Sum_probs=107.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...|||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++|+..+++. ++.++++|+.+.+      .+.+||.|++
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~------~~~~fDlIvs  212 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI------EKQKFDFIVS  212 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC------cCCCccEEEE
Confidence            46899999999999999999999999999999999999999999888875 6999999986532      3567999998


Q ss_pred             eCCCCCCCCc------------chhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          310 QCPNPDFNRP------------EHRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       310 ~fpdp~~k~~------------~~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      +  .|+....            ++...+        ....+++.+.+.|+|||.+++.+.. .+.+.+.+.+.+.+|...
T Consensus       213 N--PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v~~~~~~~g~~~~  289 (506)
T PRK01544        213 N--PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAVTQIFLDHGYNIE  289 (506)
T ss_pred             C--CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHHHHHHHhcCCCce
Confidence            7  3332211            111111        2357888999999999999999854 457778889999998776


Q ss_pred             Eeeccc
Q 014711          370 VLVQDE  375 (420)
Q Consensus       370 ~~~~D~  375 (420)
                      .+.+|.
T Consensus       290 ~~~~D~  295 (506)
T PRK01544        290 SVYKDL  295 (506)
T ss_pred             EEEecC
Confidence            667773

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.45  E-value=1e-12  Score=130.12  Aligned_cols=155  Identities=16%  Similarity=0.139  Sum_probs=103.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +.+|||||||+|.++..|++.  +.+|+|||+|+++++.|++++...+. .++.++++|+.++ +    ..+++||.|++
T Consensus       132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~----~~~~~FD~Vi~  204 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-A----DEGRKFDAVLS  204 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-h----hccCCCCEEEE
Confidence            568999999999999999874  78999999999999999988765543 4899999999876 1    14678999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCCC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN  389 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~~  389 (420)
                      ...-.+..+  +      ..+++++.++|||||.+++.+-+.....+....... .+...++...     .|  .|   .
T Consensus       205 ~~vLeHv~d--~------~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~-eyi~~~lp~g-----th--~~---~  265 (322)
T PLN02396        205 LEVIEHVAN--P------AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGA-EYILRWLPKG-----TH--QW---S  265 (322)
T ss_pred             hhHHHhcCC--H------HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhH-HHHHhcCCCC-----Cc--Cc---c
Confidence            532111111  1      389999999999999999987654432222211110 0000001000     11  12   1


Q ss_pred             CCCCCCHHHHHHHHCCCCeEEE
Q 014711          390 SFGVRSDWEQHVIDRGAPMYRL  411 (420)
Q Consensus       390 ~~~~~T~~E~~~~~~G~~i~~~  411 (420)
                      .+..+.++++.+.+.|..+...
T Consensus       266 ~f~tp~eL~~lL~~aGf~i~~~  287 (322)
T PLN02396        266 SFVTPEELSMILQRASVDVKEM  287 (322)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEE
Confidence            2344567788888899877553

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.45  E-value=2.6e-12  Score=124.44  Aligned_cols=136  Identities=15%  Similarity=0.242  Sum_probs=104.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||+|||+|.+++.+++..|+.+++|+|+|+.+++.|++++......|+.++++|+...+      .+++||.|++
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~------~~~~fD~Iv~  181 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL------PGGRFDLIVS  181 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC------CCCceeEEEE
Confidence            3578999999999999999999999999999999999999999987334468999999985431      2468999988


Q ss_pred             eCCCCCCCCcc------------hhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          310 QCPNPDFNRPE------------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       310 ~fpdp~~k~~~------------~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      +  .|+.....            +...+        ....+++.+.+.|+|||++++.+++ .+.+.+.+.+.+.|+..+
T Consensus       182 n--pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-~~~~~~~~~l~~~gf~~v  258 (275)
T PRK09328        182 N--PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-DQGEAVRALLAAAGFADV  258 (275)
T ss_pred             C--CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-hHHHHHHHHHHhCCCcee
Confidence            7  33322111            11111        2257889999999999999999865 446678888988888755


Q ss_pred             Eeecc
Q 014711          370 VLVQD  374 (420)
Q Consensus       370 ~~~~D  374 (420)
                      .+..|
T Consensus       259 ~~~~d  263 (275)
T PRK09328        259 ETRKD  263 (275)
T ss_pred             EEecC
Confidence            55445

>PRK04266 fibrillarin; Provisional

Probab=99.45  E-value=1.8e-12  Score=122.37  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=98.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++..+...|+|+|+++.|++.+.+++.+.  .|+.++.+|+.... ...+ .+.++|.|+.
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~-~~~~-l~~~~D~i~~  147 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPE-RYAH-VVEKVDVIYQ  147 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcc-hhhh-ccccCCEEEE
Confidence            467999999999999999999987779999999999999888877543  68999999987521 1111 1356999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-----eCc----HHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-----td~----~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ..++||.          ...+++.+.+.|||||.|++.     .|+    ...++...+.+++.||.....
T Consensus       148 d~~~p~~----------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~  208 (226)
T PRK04266        148 DVAQPNQ----------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV  208 (226)
T ss_pred             CCCChhH----------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            7777761          125689999999999999994     333    233345668888999886543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.44  E-value=1.4e-12  Score=125.31  Aligned_cols=105  Identities=15%  Similarity=0.206  Sum_probs=85.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.++..+++.  ..+|+|+|+|+++++.|++++...++ .|++++++|+.++. ..   .+++||.|+
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~---~~~~fD~V~  117 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QH---LETPVDLIL  117 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh-hh---cCCCCCEEE
Confidence            3578999999999999999987  57899999999999999999988886 47999999998862 21   367899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++..-.|..+  +      ..+++++.++|||||++.+..
T Consensus       118 ~~~vl~~~~~--~------~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        118 FHAVLEWVAD--P------KSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             ehhHHHhhCC--H------HHHHHHHHHHcCCCeEEEEEE
Confidence            7643222111  1      378999999999999998754

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.44  E-value=1.2e-12  Score=122.24  Aligned_cols=157  Identities=13%  Similarity=0.132  Sum_probs=109.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC------CeEEEEeCChHHHHHHHHHhHHhCCC---cEEEEEcChhhhhhhhhccC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD------LNFLGLEVNGKLVTHCRDSLQLSGIT---NGYFIATNATSTFRSIVASY  300 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~------~~viGiDis~~~i~~A~~~~~~~~l~---nv~~~~~Da~~~~~~~~~~~  300 (420)
                      ++..+||++||||.++..+.++.+.      .+|+.+|+|++|+..+.+++.+.++.   .+.++++||+++     |++
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-----pFd  174 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-----PFD  174 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----CCC
Confidence            5689999999999999999998776      89999999999999999999887763   399999999987     347


Q ss_pred             CCeEeEEEEeC-----CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce-eE----
Q 014711          301 PGKLILVSIQC-----PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK-LV----  370 (420)
Q Consensus       301 ~~~~d~i~~~f-----pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~-~~----  370 (420)
                      +.++|..++.|     +||             ++.|++++|+|||||+|.+- +....-.+.+..|....++. +.    
T Consensus       175 d~s~D~yTiafGIRN~th~-------------~k~l~EAYRVLKpGGrf~cL-eFskv~~~~l~~fy~~ysf~VlpvlG~  240 (296)
T KOG1540|consen  175 DDSFDAYTIAFGIRNVTHI-------------QKALREAYRVLKPGGRFSCL-EFSKVENEPLKWFYDQYSFDVLPVLGE  240 (296)
T ss_pred             CCcceeEEEecceecCCCH-------------HHHHHHHHHhcCCCcEEEEE-EccccccHHHHHHHHhhhhhhhchhhH
Confidence            89999998765     444             37899999999999998753 11111101222222222221 11    


Q ss_pred             -eeccccccccCCCCCCC--CCCCCCCCHHHHHHHHCCCCeEE
Q 014711          371 -LVQDECDTKTNQGGWLG--ENSFGVRSDWEQHVIDRGAPMYR  410 (420)
Q Consensus       371 -~~~D~~~~~~~~~~~~~--~~~~~~~T~~E~~~~~~G~~i~~  410 (420)
                       +..| +    .+.-++.  .+.+....+|+.+-...|++.-.
T Consensus       241 ~iagd-~----~sYqYLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  241 IIAGD-R----KSYQYLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hhhhh-H----hhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence             1111 0    0111221  24456677999999999987653

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.44  E-value=8.7e-13  Score=122.02  Aligned_cols=104  Identities=12%  Similarity=0.095  Sum_probs=83.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..||++  ..+|+|+|+|+.+++.+++++...+++|+++.+.|+.++.      .+.+||.|++
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~fD~I~~  101 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT------FDGEYDFILS  101 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC------cCCCcCEEEE
Confidence            3578999999999999999987  5799999999999999999998888889999999987641      2457999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++.-.+...      -..+.+++.+.++|+|||++++.
T Consensus       102 ~~~~~~~~~------~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        102 TVVLMFLEA------KTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             ecchhhCCH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence            743222110      01248999999999999996553

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.43  E-value=1.3e-12  Score=125.44  Aligned_cols=100  Identities=19%  Similarity=0.232  Sum_probs=84.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.+|+.+++|+|+|+.+++.|+++.     +|+.|+.+|+..+.      ++.++|.|++
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~------~~~~fD~v~~   99 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ------PPQALDLIFA   99 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC------CCCCccEEEE
Confidence            467899999999999999999999999999999999999998763     57899999997652      3568999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++.-.|.++.        ..+++++.++|||||.|.+.+
T Consensus       100 ~~~l~~~~d~--------~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        100 NASLQWLPDH--------LELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ccChhhCCCH--------HHHHHHHHHhcCCCcEEEEEC
Confidence            8665554321        378999999999999999975

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.43  E-value=2.8e-13  Score=111.43  Aligned_cols=98  Identities=19%  Similarity=0.312  Sum_probs=74.6

Q ss_pred             EEEEcCCccHHHHHHHHhC---CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          234 VVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       234 vLDIGcG~G~~~~~lA~~~---P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      |||+|||+|..+..+++.+   |..+++|+|+|+.|++.++++....+. +++|+++|+.++ +.    .++++|.|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l-~~----~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDL-PF----SDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCH-HH----HSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHC-cc----cCCCeeEEEEc
Confidence            7999999999999999986   668999999999999999999987666 899999999886 21    36799999985


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG  342 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG  342 (420)
                      +....     +-.+-....+++++.++|+|||
T Consensus        75 ~~~~~-----~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSLH-----HLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TTGGG-----GSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCccC-----CCCHHHHHHHHHHHHHHhCCCC
Confidence            33111     1111122589999999999998

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.43  E-value=3e-12  Score=121.87  Aligned_cols=126  Identities=16%  Similarity=0.197  Sum_probs=106.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhh-hhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-TFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~-~~~~~~~~~~~~~d~  306 (420)
                      ++.+|||.|+|+|.++..||+. .|..+|+.+|++++.++.|+++++.+++. |+++.+.|+.. .+..-   .+..+|.
T Consensus        40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~---~~~~~Da  116 (247)
T PF08704_consen   40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE---LESDFDA  116 (247)
T ss_dssp             TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TTSEEE
T ss_pred             CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---ccCcccE
Confidence            4899999999999999999987 79999999999999999999999999986 89999999964 22111   2467999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhc-cCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL-VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~L-kpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      |++..|+||             ..+..+.+.| ||||++++-+.+-.+.....+.|+++||..+.+
T Consensus       117 vfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~  169 (247)
T PF08704_consen  117 VFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET  169 (247)
T ss_dssp             EEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence            999999999             8899999999 999999999999999999999999999866543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK14968 putative methyltransferase; Provisional

Probab=99.41  E-value=5.9e-12  Score=114.58  Aligned_cols=132  Identities=17%  Similarity=0.241  Sum_probs=99.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc--EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n--v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++..+||+|||+|.++..+++.  ..+++|+|+|+.+++.+++++...++++  +.++++|+.+.+      .+.++|.|
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~d~v   94 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF------RGDKFDVI   94 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc------cccCceEE
Confidence            4678999999999999999988  6899999999999999999998888766  899999986532      24589999


Q ss_pred             EEeCCCCCCCCc-------------c--hhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          308 SIQCPNPDFNRP-------------E--HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       308 ~~~fpdp~~k~~-------------~--~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +.+.|  +....             +  ...+.....+++++.++|||||.+++........+.+.+.+.+.|+.....
T Consensus        95 i~n~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  171 (188)
T PRK14968         95 LFNPP--YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV  171 (188)
T ss_pred             EECCC--cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence            87633  21100             0  000112357899999999999998886543333456888899999876543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.41  E-value=1.2e-12  Score=121.91  Aligned_cols=112  Identities=19%  Similarity=0.281  Sum_probs=93.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||-|.++..||+.  +.+|+|+|+|+++|+.|+..+.+.++. +.+.+..++++..     ..++||.|.+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~-----~~~~FDvV~c  130 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLAS-----AGGQFDVVTC  130 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHh-----cCCCccEEEE
Confidence            4788999999999999999999  599999999999999999999888874 7788888888742     2479999976


Q ss_pred             -----eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHH
Q 014711          310 -----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL  362 (420)
Q Consensus       310 -----~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~  362 (420)
                           +.|||-             .|++.+.+.+||||.+++.|-+.....++...+.
T Consensus       131 mEVlEHv~dp~-------------~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~  175 (243)
T COG2227         131 MEVLEHVPDPE-------------SFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG  175 (243)
T ss_pred             hhHHHccCCHH-------------HHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH
Confidence                 357773             7999999999999999999977665555554443

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.40  E-value=1.6e-11  Score=118.98  Aligned_cols=105  Identities=16%  Similarity=0.240  Sum_probs=85.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|..+..+++. .+..+++|+|+++.+++.|+++....++.|++|+++|+.++     +.++++||.|+
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-----~~~~~~fD~Vi  151 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-----PVADNSVDVII  151 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-----CCCCCceeEEE
Confidence            4789999999999998887776 46678999999999999999999888888999999998765     22467899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .+..-.+...        .+.+++++.++|||||+|++.
T Consensus       152 ~~~v~~~~~d--------~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        152 SNCVINLSPD--------KERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             EcCcccCCCC--------HHHHHHHHHHHcCCCcEEEEE
Confidence            7642222111        137899999999999999984

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=3.1e-12  Score=123.34  Aligned_cols=127  Identities=20%  Similarity=0.280  Sum_probs=98.4

Q ss_pred             cCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       226 f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++......|||+|||.|-+++.+|+.+|+..++.+|++..+++.|++|+..++++|..++..|..+-       -.++||
T Consensus       154 l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-------v~~kfd  226 (300)
T COG2813         154 LPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-------VEGKFD  226 (300)
T ss_pred             CCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------cccccc
Confidence            3333345899999999999999999999999999999999999999999999999876777777553       234899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-cHHHHHHHHHHHH
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFL  362 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-~~~~~~~~~~~l~  362 (420)
                      .|++|  .|.+....--.+ +..++++...+.|++||.|++... ..+|...|.+.|.
T Consensus       227 ~IisN--PPfh~G~~v~~~-~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg  281 (300)
T COG2813         227 LIISN--PPFHAGKAVVHS-LAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG  281 (300)
T ss_pred             EEEeC--CCccCCcchhHH-HHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence            99997  565433322222 234899999999999999999875 3555555555544

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.39  E-value=9e-14  Score=113.73  Aligned_cols=99  Identities=19%  Similarity=0.285  Sum_probs=65.6

Q ss_pred             EEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCC
Q 014711          235 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  314 (420)
Q Consensus       235 LDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp  314 (420)
                      ||||||+|.++..+++++|..+++|+|+|+.|++.|+++.......+...+..+..+.....   ..++||.|++...-.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD---PPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC---C----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc---cccccceehhhhhHh
Confidence            79999999999999999999999999999999999999988877666666666555542111   235999999886555


Q ss_pred             CCCCcchhhhhhHHHHHHHHHhhccCCeEE
Q 014711          315 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKV  344 (420)
Q Consensus       315 ~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l  344 (420)
                      |.  .+.      ..+++.+++.|||||.|
T Consensus        78 ~l--~~~------~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HL--EDI------EAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ----S-H------HHHHHHHTTT-TSS-EE
T ss_pred             hh--hhH------HHHHHHHHHHcCCCCCC
Confidence            54  111      38999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK14967 putative methyltransferase; Provisional

Probab=99.38  E-value=1.1e-11  Score=116.86  Aligned_cols=129  Identities=19%  Similarity=0.184  Sum_probs=95.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++...+. ++.++++|+.+.    +  .+.+||.|++
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~--~~~~fD~Vi~  107 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V--EFRPFDVVVS  107 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c--cCCCeeEEEE
Confidence            3578999999999999999986 345899999999999999999988776 689999998654    2  3578999998


Q ss_pred             eCCCCCCCCcc-------h--------hhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          310 QCPNPDFNRPE-------H--------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       310 ~fpdp~~k~~~-------~--------k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      +-  |+.....       +        ........+++++.+.|||||++++.+..........+.+++.++..
T Consensus       108 np--Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~  179 (223)
T PRK14967        108 NP--PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA  179 (223)
T ss_pred             CC--CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence            72  3322111       0        01112357889999999999999986433323456777888888764

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.38  E-value=3.3e-12  Score=119.68  Aligned_cols=100  Identities=20%  Similarity=0.239  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..||+..+ +.+|+|+|+++.+++.|++++.+.+++|++++++|+.+.+.     ....||.|+
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Ii  151 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-----PLAPYDRIY  151 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-----ccCCCCEEE
Confidence            468999999999999999999854 57899999999999999999999999999999999976521     245899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +..+.+              .+...+.+.|+|||++++..
T Consensus       152 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       152 VTAAGP--------------KIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             EcCCcc--------------cccHHHHHhcCcCcEEEEEE
Confidence            874432              34456788999999999865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.37  E-value=2.1e-12  Score=117.85  Aligned_cols=140  Identities=19%  Similarity=0.172  Sum_probs=103.4

Q ss_pred             eeeeeccccCCCccccccCCccccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH
Q 014711          197 VWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL  276 (420)
Q Consensus       197 ~le~l~g~~lPgv~aL~~~~p~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~  276 (420)
                      +++|-..++.|..+-|.. .|.          .....|+|+|||+|+.+..|++++|+..++|+|-|++|++.|+++   
T Consensus         8 Yl~F~~eRtRPa~dLla~-Vp~----------~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r---   73 (257)
T COG4106           8 YLQFEDERTRPARDLLAR-VPL----------ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR---   73 (257)
T ss_pred             HHHHHHhccCcHHHHHhh-CCc----------cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh---
Confidence            344445566666544432 221          135679999999999999999999999999999999999999665   


Q ss_pred             hCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-Cc--HHH
Q 014711          277 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DI--EEV  353 (420)
Q Consensus       277 ~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~--~~~  353 (420)
                        +.|++|.++|+.++-      ++.+.|.++.|-.-.|..+ |       +++|.++...|.|||.+.++. ||  +..
T Consensus        74 --lp~~~f~~aDl~~w~------p~~~~dllfaNAvlqWlpd-H-------~~ll~rL~~~L~Pgg~LAVQmPdN~deps  137 (257)
T COG4106          74 --LPDATFEEADLRTWK------PEQPTDLLFANAVLQWLPD-H-------PELLPRLVSQLAPGGVLAVQMPDNLDEPS  137 (257)
T ss_pred             --CCCCceecccHhhcC------CCCccchhhhhhhhhhccc-c-------HHHHHHHHHhhCCCceEEEECCCccCchh
Confidence              578999999998872      5778899987754444221 2       488999999999999999986 22  233


Q ss_pred             HHHHHHHHHHcCC
Q 014711          354 MLRMKQQFLEYGK  366 (420)
Q Consensus       354 ~~~~~~~l~~~g~  366 (420)
                      ...|.+..++.+|
T Consensus       138 H~~mr~~A~~~p~  150 (257)
T COG4106         138 HRLMRETADEAPF  150 (257)
T ss_pred             HHHHHHHHhcCch
Confidence            4456666665544

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.37  E-value=4.4e-12  Score=112.80  Aligned_cols=127  Identities=20%  Similarity=0.296  Sum_probs=95.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhc------cCCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVA------SYPG  302 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~------~~~~  302 (420)
                      +.++|||+|||+|.++..|++.--....+|+|.|+++++.|+..+++.+.+| ++|.+.|+.+-  .+++      ...+
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~~~qfdlvlDKG  144 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFLSGQFDLVLDKG  144 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cccccceeEEeecC
Confidence            4569999999999999999998434569999999999999999999999998 99999999873  2210      0124


Q ss_pred             eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      .+|.|.+ .||-.      ..|+  .-++..+.+.|+|||.|++.+.+ ...+++.+.+++.++..
T Consensus       145 T~DAisL-s~d~~------~~r~--~~Y~d~v~~ll~~~gifvItSCN-~T~dELv~~f~~~~f~~  200 (227)
T KOG1271|consen  145 TLDAISL-SPDGP------VGRL--VVYLDSVEKLLSPGGIFVITSCN-FTKDELVEEFENFNFEY  200 (227)
T ss_pred             ceeeeec-CCCCc------ccce--eeehhhHhhccCCCcEEEEEecC-ccHHHHHHHHhcCCeEE
Confidence            4455544 34432      1121  25778889999999999997644 44678899999888653

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.37  E-value=3.8e-12  Score=123.52  Aligned_cols=107  Identities=14%  Similarity=0.233  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC---CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD---LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~---~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~  306 (420)
                      ...+|||+|||+|.++..+++..|.   ..++|+|+|+.+++.|+++     .+|+.+.++|+.++     ++.+++||.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~l-----p~~~~sfD~  154 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRL-----PFADQSLDA  154 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccC-----CCcCCceeE
Confidence            3567999999999999999988774   3799999999999999765     35789999998775     235789999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHH
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF  361 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l  361 (420)
                      |+..+. |              ..++++.++|||||+|++.+....+..++.+.+
T Consensus       155 I~~~~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~  194 (272)
T PRK11088        155 IIRIYA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLI  194 (272)
T ss_pred             EEEecC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence            987653 2              345788999999999999886665555555444

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.36  E-value=1.2e-11  Score=119.46  Aligned_cols=104  Identities=16%  Similarity=0.126  Sum_probs=81.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|..+..+++.+ ..+|+|+|+|+.+++.|++++..  ..++.|.++|+...     +.++++||.|++
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~-----~~~~~~FD~V~s  123 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK-----DFPENTFDMIYS  123 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC-----CCCCCCeEEEEE
Confidence            46789999999999999998875 67999999999999999988653  35799999999754     224789999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ...-.+....      -...++++++++|||||+|++.
T Consensus       124 ~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lvi~  155 (263)
T PTZ00098        124 RDAILHLSYA------DKKKLFEKCYKWLKPNGILLIT  155 (263)
T ss_pred             hhhHHhCCHH------HHHHHHHHHHHHcCCCcEEEEE
Confidence            5211111000      1147999999999999999984

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.35  E-value=6.5e-12  Score=116.03  Aligned_cols=102  Identities=9%  Similarity=-0.003  Sum_probs=79.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|.++..+|++  ..+|+|+|+|+.+++.+++++...+++ +++.+.|+... +     .+.++|.|+++
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~fD~I~~~  101 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAA-A-----LNEDYDFIFST  101 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhc-c-----ccCCCCEEEEe
Confidence            468999999999999999986  579999999999999999998887774 78888887543 1     24579999876


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++-.+...      -..+.+++.+++.|||||++++.
T Consensus       102 ~~~~~~~~------~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       102 VVFMFLQA------GRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cccccCCH------HHHHHHHHHHHHHhCCCcEEEEE
Confidence            43222111      01247999999999999996654

Part of a tellurite-reducing operon tehA and tehB

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.35  E-value=5.4e-12  Score=122.35  Aligned_cols=104  Identities=19%  Similarity=0.253  Sum_probs=79.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||.|.++..+|+++ +++|+|+.+|++..+.+++++.+.|+.+ +++.+.|..++        +.+||.|+
T Consensus        62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--------~~~fD~Iv  132 (273)
T PF02353_consen   62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--------PGKFDRIV  132 (273)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--------CCCCCEEE
Confidence            58899999999999999999998 8999999999999999999999999874 99999998775        34899987


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ..-.-.+...      --.+.|++.+.++|||||.+++.+
T Consensus       133 Si~~~Ehvg~------~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  133 SIEMFEHVGR------KNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EESEGGGTCG------GGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             EEechhhcCh------hHHHHHHHHHHHhcCCCcEEEEEe
Confidence            7632222111      112589999999999999999864

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.35  E-value=8.1e-12  Score=124.89  Aligned_cols=119  Identities=17%  Similarity=0.264  Sum_probs=90.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ..+|||+|||+|.++..+++++|+..++++|+|+.+++.|++++..+++. .+++..|+...       .++.||.|+++
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-------~~~~fDlIvsN  268 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-------IKGRFDMIISN  268 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-------cCCCccEEEEC
Confidence            45799999999999999999999999999999999999999999988874 57778887542       25689999997


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HHHHHHHHHH
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ  360 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~~~~~~~~~  360 (420)
                      .  |.+........ ...++++.+.+.|||||.|++.... .+|...+.+.
T Consensus       269 P--PFH~g~~~~~~-~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~  316 (342)
T PRK09489        269 P--PFHDGIQTSLD-AAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDET  316 (342)
T ss_pred             C--CccCCccccHH-HHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHH
Confidence            3  44322111111 2258999999999999999987643 4454444333

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.35  E-value=7e-12  Score=120.05  Aligned_cols=99  Identities=12%  Similarity=0.121  Sum_probs=80.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +...|||+|||+|.++..+++.  ..+++|+|+|+.+++.|+++..     +..++++|+..+     +.++++||.|+.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~-----~~~~~~fD~V~s  109 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL-----PLATATFDLAWS  109 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC-----cCCCCcEEEEEE
Confidence            3578999999999999998875  5799999999999999988642     346889999775     225778999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +++-.|..+.        ..++.++.++|+|||.+++.+
T Consensus       110 ~~~l~~~~d~--------~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        110 NLAVQWCGNL--------STALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             CchhhhcCCH--------HHHHHHHHHHcCCCeEEEEEe
Confidence            7655553321        378999999999999999986

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.34  E-value=1.5e-11  Score=122.32  Aligned_cols=125  Identities=15%  Similarity=0.128  Sum_probs=94.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||||||+|.++..+++..|..+++|+|+|+.+++.|+++..   ..|++++++|+.++     +.++++||.|+++
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l-----p~~~~sFDvVIs~  185 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL-----PFPTDYADRYVSA  185 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC-----CCCCCceeEEEEc
Confidence            578999999999999999998888999999999999999998754   35789999999875     2246789999875


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HH---------------HHHHHHHHHHHcCCceeEe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EE---------------VMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~---------------~~~~~~~~l~~~g~~~~~~  371 (420)
                      ..-.+..+  .      ...++++.++|||||++++.... +.               ..+++.+.+++.||..+.+
T Consensus       186 ~~L~~~~d--~------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        186 GSIEYWPD--P------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             ChhhhCCC--H------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence            32222111  1      26899999999999999875321 10               1255667778888876543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.34  E-value=7.6e-12  Score=120.35  Aligned_cols=105  Identities=14%  Similarity=0.169  Sum_probs=87.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .++.++||||||.|..++.+|+++ +.+|+|+++|+++.+.+++++.+.|++ |+++.-.|..++        .+.||.|
T Consensus        71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--------~e~fDrI  141 (283)
T COG2230          71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--------EEPFDRI  141 (283)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------cccccee
Confidence            368999999999999999999999 999999999999999999999999998 899999999876        3349998


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-.=-++...      -.+.|++.+.+.|+|||.+.+.+
T Consensus       142 vSvgmfEhvg~~------~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         142 VSVGMFEHVGKE------NYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             eehhhHHHhCcc------cHHHHHHHHHhhcCCCceEEEEE
Confidence            654211111111      12589999999999999999875

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.33  E-value=1.1e-11  Score=116.65  Aligned_cols=101  Identities=16%  Similarity=0.278  Sum_probs=84.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|.++..+++..|..+++|+|+++.++..++++..    +|+.++++|+.+.     +.+++++|.|+++
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~-----~~~~~~fD~vi~~  105 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKL-----PLEDSSFDLIVSN  105 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhC-----CCCCCceeEEEEh
Confidence            468999999999999999999999999999999999999988754    4789999999875     1246789999987


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +.-.|..+.        ..+++.+.+.|+|||.+++.+
T Consensus       106 ~~l~~~~~~--------~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       106 LALQWCDDL--------SQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhhhccCH--------HHHHHHHHHHcCCCcEEEEEe
Confidence            654443221        378999999999999999875

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.33  E-value=1.5e-11  Score=115.56  Aligned_cols=124  Identities=16%  Similarity=0.198  Sum_probs=94.7

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQC  311 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f  311 (420)
                      +|||||||+|.++..+++.+|+.+++|+|+|+.+++.|++++...++. +++++..|+... +     .+++||.|+...
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-----~~~~fD~I~~~~   75 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-----FPDTYDLVFGFE   75 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-----CCCCCCEeehHH
Confidence            599999999999999999999999999999999999999999887775 699999998654 1     245799997642


Q ss_pred             CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH------------H---HHHHHHHHHHHcCCceeE
Q 014711          312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE------------E---VMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~------------~---~~~~~~~~l~~~g~~~~~  370 (420)
                      .-.+..+        .+.+++.+.++|||||++++..-..            .   ...+..+.+.+.|+....
T Consensus        76 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~  141 (224)
T smart00828       76 VIHHIKD--------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE  141 (224)
T ss_pred             HHHhCCC--------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence            2111111        1489999999999999999853100            0   123466778888887654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.31  E-value=1.7e-11  Score=114.17  Aligned_cols=100  Identities=10%  Similarity=0.116  Sum_probs=82.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||||||+|..+..+++..+ ..+++|+|+++++++.|++++.+.++. |++++++|+.+.++     ...+||.|
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~I  146 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-----KHAPFDAI  146 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-----cCCCccEE
Confidence            357899999999999999998853 679999999999999999999888876 59999999976531     24689999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++...-+              .+.+++.+.|+|||+|++..
T Consensus       147 i~~~~~~--------------~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        147 IVTAAAS--------------TIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             EEccCcc--------------hhhHHHHHhcCcCcEEEEEE
Confidence            9875433              23356788999999998854

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.31  E-value=2.9e-11  Score=126.42  Aligned_cols=104  Identities=15%  Similarity=0.177  Sum_probs=82.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++.+ +.+++|+|+|+.+++.|++++...+ .++.|.++|+....   +  ++++||.|++
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~---~--~~~~fD~I~s  338 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT---Y--PDNSFDVIYS  338 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC---C--CCCCEEEEEE
Confidence            46789999999999999999876 7799999999999999998875322 37999999987651   2  4678999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-.|..+        ...++++++++|||||.|++..
T Consensus       339 ~~~l~h~~d--------~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        339 RDTILHIQD--------KPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             CCcccccCC--------HHHHHHHHHHHcCCCeEEEEEE
Confidence            533222211        1379999999999999999863

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.31  E-value=1.5e-11  Score=115.16  Aligned_cols=100  Identities=17%  Similarity=0.223  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||||||+|.++..+++.. ++.+++|+|+++++++.|++++.+.+..|++++++|+...+   .  ....||.|+
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~---~--~~~~fD~I~  150 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY---E--ENAPYDRIY  150 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC---C--cCCCcCEEE
Confidence            46789999999999999999884 56799999999999999999999999999999999997652   1  357899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-+              .+...+.+.|||||++++..
T Consensus       151 ~~~~~~--------------~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        151 VTAAGP--------------DIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             ECCCcc--------------cchHHHHHhhCCCcEEEEEE
Confidence            864322              23345677899999998864

>PRK06922 hypothetical protein; Provisional

Probab=99.30  E-value=1.5e-11  Score=129.74  Aligned_cols=113  Identities=14%  Similarity=0.232  Sum_probs=86.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||||||+|.++..+++.+|+.+++|+|+|+.|++.|++++...+ .++.++++|+.++ +..+  +++++|.|+++
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dL-p~~f--edeSFDvVVsn  494 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINL-SSSF--EKESVDTIVYS  494 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhC-cccc--CCCCEEEEEEc
Confidence            578999999999999999999999999999999999999998876554 4789999999875 3334  57899999876


Q ss_pred             CCCCCCC-----CcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          311 CPNPDFN-----RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       311 fpdp~~k-----~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++-.|..     ....-..-....++++++++|||||.+++.
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~  536 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR  536 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            4322110     000000011248999999999999999986

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.30  E-value=4.6e-11  Score=114.57  Aligned_cols=117  Identities=20%  Similarity=0.285  Sum_probs=88.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|..++.+++..+ ..++|+|+|+.+++.|++++..+++. ++.+..+             +.+||.|+
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------~~~fD~Vv  184 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------DLKADVIV  184 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-------------CCCcCEEE
Confidence            468899999999999988776543 46999999999999999999887763 3332222             22689998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ++....           ....++.++.++|||||++++..-.....+.+.+.+.++|+.....
T Consensus       185 ani~~~-----------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~  236 (250)
T PRK00517        185 ANILAN-----------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV  236 (250)
T ss_pred             EcCcHH-----------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence            763211           1247889999999999999997544555677888899999876544

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.29  E-value=7.6e-11  Score=115.45  Aligned_cols=122  Identities=15%  Similarity=0.215  Sum_probs=93.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++++..+++.+ +.+...|....       .+++||.|+
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-------~~~~fDlVv  230 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-------IEGKADVIV  230 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-------cCCCceEEE
Confidence            4689999999999999888865 45689999999999999999999888764 66776663222       356899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ++..-.           ....++..+.+.|||||+|++..-......++.+.++++ |....+
T Consensus       231 an~~~~-----------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~  281 (288)
T TIGR00406       231 ANILAE-----------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI  281 (288)
T ss_pred             EecCHH-----------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence            874211           113788999999999999998654555667778888776 665443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00811 spermidine synthase; Provisional

Probab=99.28  E-value=6.3e-11  Score=115.70  Aligned_cols=127  Identities=16%  Similarity=0.181  Sum_probs=99.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-----CCcEEEEEcChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-----l~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++..||+||||+|..+..+++..+..+++++|+++.+++.|++.....+     -++++++.+|+..++..    .+++|
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~~y  151 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE----TENSF  151 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----CCCcc
Confidence            4678999999999999999976556799999999999999999876432     35799999999987532    36789


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      |.|++..+||+..    ...+...+|++.+.+.|+|||.+++.+..    ......+.+.+++.
T Consensus       152 DvIi~D~~dp~~~----~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~  211 (283)
T PRK00811        152 DVIIVDSTDPVGP----AEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV  211 (283)
T ss_pred             cEEEECCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            9999988888722    22456679999999999999999997643    23344455555554

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.28  E-value=2.9e-11  Score=120.54  Aligned_cols=127  Identities=15%  Similarity=0.156  Sum_probs=97.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..+||.|||+|.+++.++..  ..+++|+|+++.|+..|++|+...++.++.++++|+.++     +..++++|.|++
T Consensus       182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l-----~~~~~~~D~Iv~  254 (329)
T TIGR01177       182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL-----PLSSESVDAIAT  254 (329)
T ss_pred             CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC-----CcccCCCCEEEE
Confidence            4678999999999999987764  679999999999999999999999998899999999875     213678999988


Q ss_pred             eCCCCCCCCc---chhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          310 QCPNPDFNRP---EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       310 ~fpdp~~k~~---~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      +  .|+-...   .+...-+..++++.+.+.|||||++++.+....   .+.+.++++|| ..
T Consensus       255 d--PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~-i~  311 (329)
T TIGR01177       255 D--PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR-VV  311 (329)
T ss_pred             C--CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc-ch
Confidence            7  3332211   111112346899999999999999988764432   24456778887 54

This family is found exclusively in the Archaea.

>PRK04457 spermidine synthase; Provisional

Probab=99.28  E-value=7.1e-11  Score=114.07  Aligned_cols=126  Identities=11%  Similarity=0.113  Sum_probs=94.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||||||+|.++..+++.+|+.+++++|+++.+++.|+++....+ .++++++++|+.+++..    .+.++|.|+
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I~  141 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVIL  141 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEEE
Confidence            4578999999999999999999999999999999999999999876544 36899999999887542    246799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHHHH
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLE  363 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l~~  363 (420)
                      +...++.   . ....+...+|++.+.+.|+|||.+.+.. ..........+.+++
T Consensus       142 ~D~~~~~---~-~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~  193 (262)
T PRK04457        142 VDGFDGE---G-IIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLES  193 (262)
T ss_pred             EeCCCCC---C-CccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHH
Confidence            7532211   1 1112345699999999999999999842 222233344455544

>PLN02672 methionine S-methyltransferase

Probab=99.28  E-value=7e-11  Score=131.77  Aligned_cols=134  Identities=18%  Similarity=0.168  Sum_probs=102.7

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC----------------CcEEEEEcChhhhhh
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI----------------TNGYFIATNATSTFR  294 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l----------------~nv~~~~~Da~~~~~  294 (420)
                      +.+|||+|||+|.+++.+++.+|..+++|+|+|+.+++.|++|+..+++                .+++|+++|+.+.+.
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            3589999999999999999999999999999999999999999987543                369999999976531


Q ss_pred             hhhccCCCeEeEEEEeCCCCCCCCcc------------h---------hhhh-----------hHHHHHHHHHhhccCCe
Q 014711          295 SIVASYPGKLILVSIQCPNPDFNRPE------------H---------RWRM-----------VQRSLVEAVSDLLVHDG  342 (420)
Q Consensus       295 ~~~~~~~~~~d~i~~~fpdp~~k~~~------------~---------k~Rl-----------~~~~~l~~i~~~LkpgG  342 (420)
                      .    ....||.|..|  .|+.....            +         .-.+           +.++++.++.++|+|||
T Consensus       199 ~----~~~~fDlIVSN--PPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG  272 (1082)
T PLN02672        199 D----NNIELDRIVGC--IPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG  272 (1082)
T ss_pred             c----cCCceEEEEEC--CCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence            0    12369999887  33322110            0         0111           22688899999999999


Q ss_pred             EEEEEeCcHHHHHHHH-HHHHHcCCceeEe
Q 014711          343 KVFLQSDIEEVMLRMK-QQFLEYGKGKLVL  371 (420)
Q Consensus       343 ~l~~~td~~~~~~~~~-~~l~~~g~~~~~~  371 (420)
                      .++++++. .+.+.+. +.+++.||....+
T Consensus       273 ~l~lEiG~-~q~~~v~~~l~~~~gf~~~~~  301 (1082)
T PLN02672        273 IMIFNMGG-RPGQAVCERLFERRGFRITKL  301 (1082)
T ss_pred             EEEEEECc-cHHHHHHHHHHHHCCCCeeEE
Confidence            99999964 5577788 6999999876443

>PLN03075 nicotianamine synthase; Provisional

Probab=99.28  E-value=3.7e-11  Score=116.85  Aligned_cols=107  Identities=11%  Similarity=0.114  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCCccHHH--HHHHHhCCCCeEEEEeCChHHHHHHHHHhHH-hCCCc-EEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFL--LGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-SGITN-GYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~--~~lA~~~P~~~viGiDis~~~i~~A~~~~~~-~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      .+.+|+|||||.|.++  +.+++.+|+..|+|+|+++++++.|++.+.+ .++.+ ++|.++|+.+...     ....||
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-----~l~~FD  197 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-----SLKEYD  197 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----ccCCcC
Confidence            4688999999988553  3345568999999999999999999999965 67764 9999999987521     136799


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .|++..--.|-+. .      ..++++.+++.|+|||.+++.+
T Consensus       198 lVF~~ALi~~dk~-~------k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        198 VVFLAALVGMDKE-E------KVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEEecccccccc-c------HHHHHHHHHHhcCCCcEEEEec
Confidence            9988632222111 1      1489999999999999999987

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.26  E-value=3.3e-11  Score=117.93  Aligned_cols=102  Identities=12%  Similarity=0.096  Sum_probs=81.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|..+..+|+.  ..+|+|+|+|+.+++.+++++...++ ++++.+.|+....      .+++||.|++.
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~------~~~~fD~I~~~  191 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS------IQEEYDFILST  191 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc------ccCCccEEEEc
Confidence            458999999999999999986  68999999999999999999988888 8999999986541      26789999876


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +.-.+...      -..+.+++.+.+.|+|||++++.
T Consensus       192 ~vl~~l~~------~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        192 VVLMFLNR------ERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             chhhhCCH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence            42221110      01248999999999999996654

>PRK01581 speE spermidine synthase; Validated

Probab=99.26  E-value=1.3e-10  Score=115.60  Aligned_cols=132  Identities=17%  Similarity=0.197  Sum_probs=101.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHH-----hHHh--CCCcEEEEEcChhhhhhhhhccCCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS-----LQLS--GITNGYFIATNATSTFRSIVASYPG  302 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~-----~~~~--~l~nv~~~~~Da~~~~~~~~~~~~~  302 (420)
                      ++.+||+||||.|..+..+.+..+..+++++|+++.+++.|++.     ..+.  .-++++++.+|+.+++..    .++
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~~~  225 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----PSS  225 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----cCC
Confidence            56799999999999988888765668999999999999999962     1111  235799999999987542    356


Q ss_pred             eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHH----HHHHHHHHHcCCce
Q 014711          303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM----LRMKQQFLEYGKGK  368 (420)
Q Consensus       303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~----~~~~~~l~~~g~~~  368 (420)
                      .||.|++.+|||...   ...++...+|++.+.+.|+|||.|+..+..+.+.    ..+.+.+++.++..
T Consensus       226 ~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v  292 (374)
T PRK01581        226 LYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV  292 (374)
T ss_pred             CccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence            899999999888622   2346777899999999999999999987654433    33566677766543

>TIGR00452 methyltransferase, putative

Probab=99.25  E-value=2.1e-10  Score=113.30  Aligned_cols=104  Identities=12%  Similarity=0.115  Sum_probs=77.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..++...+. .|+|+|.|+.|+..++......+ ..++.+...++.++ +     ...+||.|+
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p-----~~~~FD~V~  193 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-H-----ELYAFDTVF  193 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-C-----CCCCcCEEE
Confidence            4689999999999999999988653 79999999999977544322222 34688888988776 1     235799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.|..  .+      ..+|++++++|||||.|++.+
T Consensus       194 s~gvL~H~~--dp------~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       194 SMGVLYHRK--SP------LEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EcchhhccC--CH------HHHHHHHHHhcCCCCEEEEEE
Confidence            763222111  11      279999999999999999864

Known examples to date are restricted to the proteobacteria.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.23  E-value=2.4e-10  Score=112.72  Aligned_cols=103  Identities=14%  Similarity=0.141  Sum_probs=81.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..++||||||+|.+++.+++++|+.+++++|. +.+++.+++++.+.++. +++++.+|+.+. +  +   + ..|.++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~--~---~-~~D~v~  220 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--Y---P-EADAVL  220 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-C--C---C-CCCEEE
Confidence            357999999999999999999999999999997 78999999999988875 699999998753 1  2   2 248776


Q ss_pred             EeCCC-CCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpd-p~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +...- -|..       -....+++++++.|+|||++++.
T Consensus       221 ~~~~lh~~~~-------~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       221 FCRILYSANE-------QLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             eEhhhhcCCh-------HHHHHHHHHHHHhcCCCCEEEEE
Confidence            54211 1110       01137899999999999999875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK08317 hypothetical protein; Provisional

Probab=99.23  E-value=1.1e-10  Score=109.73  Aligned_cols=104  Identities=15%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||+|||+|.++..+++.+ |..+++|+|+|+.+++.|+++.. ....|+.+.+.|+...     +..++.||.|+
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~-----~~~~~~~D~v~   92 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGL-----PFPDGSFDAVR   92 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccC-----CCCCCCceEEE
Confidence            46789999999999999999987 78999999999999999988732 3346899999998764     12467899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +...-.+..+  +      ..+++++.++|||||.+++.
T Consensus        93 ~~~~~~~~~~--~------~~~l~~~~~~L~~gG~l~~~  123 (241)
T PRK08317         93 SDRVLQHLED--P------ARALAEIARVLRPGGRVVVL  123 (241)
T ss_pred             EechhhccCC--H------HHHHHHHHHHhcCCcEEEEE
Confidence            7632222111  1      37899999999999999875

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.23  E-value=6.2e-10  Score=113.41  Aligned_cols=135  Identities=12%  Similarity=0.141  Sum_probs=97.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||+|||+|.+++.++.. ....++++|+|+.+++.|++|+..+++.  +++++++|+.+.+..+.. ...+||.|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCCEE
Confidence            3678999999999999876653 4569999999999999999999999884  799999999987644321 24579999


Q ss_pred             EEeCCCCCCCCcchh-hhh--hHHHHHHHHHhhccCCeEEEEEeCc-----HHHHHHHHHHHHHcCCce
Q 014711          308 SIQCPNPDFNRPEHR-WRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k-~Rl--~~~~~l~~i~~~LkpgG~l~~~td~-----~~~~~~~~~~l~~~g~~~  368 (420)
                      +++  .|.+...... ...  -..+++..+.++|+|||.|+..|..     +.+.+.+.+.....+...
T Consensus       298 ilD--PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~  364 (396)
T PRK15128        298 VMD--PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV  364 (396)
T ss_pred             EEC--CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence            886  3333222111 011  1356778899999999999986642     444444555555655444

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.22  E-value=2.2e-10  Score=118.42  Aligned_cols=135  Identities=15%  Similarity=0.259  Sum_probs=97.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|..+..+++.. +...++++|+++.+++.+++++.+.|+.|+.++++|+..+. ...+..+++||.|+
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~-~~~~~~~~~fD~Vl  330 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL-ELKPQWRGYFDRIL  330 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc-cccccccccCCEEE
Confidence            46899999999999999999884 45799999999999999999999999999999999998762 11101256899998


Q ss_pred             EeCC----CCCCCCcchhhh--------h--hHHHHHHHHHhhccCCeEEEEEeCc---HHHHHHHHHHHHHcC
Q 014711          309 IQCP----NPDFNRPEHRWR--------M--VQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  365 (420)
Q Consensus       309 ~~fp----dp~~k~~~~k~R--------l--~~~~~l~~i~~~LkpgG~l~~~td~---~~~~~~~~~~l~~~g  365 (420)
                      +.-|    .-+.+....+.+        +  ++.++|+.+.+.|||||+++..|-.   ++-.+.+...+++++
T Consensus       331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~  404 (434)
T PRK14901        331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP  404 (434)
T ss_pred             EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence            8632    011111111111        1  2578999999999999999887632   122223445556664

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.1e-10  Score=113.16  Aligned_cols=133  Identities=14%  Similarity=0.217  Sum_probs=100.9

Q ss_pred             ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhh
Q 014711          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIV  297 (420)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~  297 (420)
                      .+.|.+.+.. ++..+||+|||||-+++..++.. ...++|+|++|-+++.|++|+..+++.. ++.-..+....    .
T Consensus       152 cL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~----~  225 (300)
T COG2264         152 CLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV----P  225 (300)
T ss_pred             HHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh----c
Confidence            4456555554 57899999999999999999874 4579999999999999999999998875 22323333222    1


Q ss_pred             ccCCCeEeEEEEeC-CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          298 ASYPGKLILVSIQC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       298 ~~~~~~~d~i~~~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                        ....+|.|..|- .+|.            ..+..++.+.|||||++++.==-.++.+.+.+.+.+.||....+
T Consensus       226 --~~~~~DvIVANILA~vl------------~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~  286 (300)
T COG2264         226 --ENGPFDVIVANILAEVL------------VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV  286 (300)
T ss_pred             --ccCcccEEEehhhHHHH------------HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence              235899998872 2221            37889999999999999997545677888888999999987654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.22  E-value=2.1e-10  Score=119.03  Aligned_cols=130  Identities=15%  Similarity=0.102  Sum_probs=95.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||+|||+|..+..+++.. |+..++++|+++.+++.+++++++.|+.|+.++++|+..+. ..+   .++||.|+
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~---~~~fD~Vl  325 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-EKF---AEKFDKIL  325 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-chh---cccCCEEE
Confidence            46789999999999999999885 77899999999999999999999999999999999998752 112   36799998


Q ss_pred             EeCCCCCCCC----cchh-------h---hh--hHHHHHHHHHhhccCCeEEEEEeCc--H-HHHHHHHHHHHHcC
Q 014711          309 IQCPNPDFNR----PEHR-------W---RM--VQRSLVEAVSDLLVHDGKVFLQSDI--E-EVMLRMKQQFLEYG  365 (420)
Q Consensus       309 ~~fpdp~~k~----~~~k-------~---Rl--~~~~~l~~i~~~LkpgG~l~~~td~--~-~~~~~~~~~l~~~g  365 (420)
                      +.-|  +.-.    +++.       .   ++  ++.++|+.+.+.|||||+++..|-.  . .....+...+++++
T Consensus       326 ~D~P--csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~  399 (444)
T PRK14902        326 VDAP--CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP  399 (444)
T ss_pred             EcCC--CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence            8633  1100    0110       1   11  3467899999999999999977632  1 21222344556664

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.21  E-value=1e-10  Score=116.21  Aligned_cols=104  Identities=16%  Similarity=0.192  Sum_probs=78.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..+++..+. .|+|+|.|+.++..++......+ -.|+.|+.+|+.++     + .+++||.|+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-----p-~~~~FD~V~  194 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-----P-ALKAFDTVF  194 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-----C-CcCCcCEEE
Confidence            4689999999999999999998765 59999999999876554433222 24799999999876     2 267899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+  ...+      ..+++++++.|+|||.|++.+
T Consensus       195 s~~vl~H--~~dp------~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        195 SMGVLYH--RRSP------LDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ECChhhc--cCCH------HHHHHHHHHhcCCCcEEEEEE
Confidence            7521111  1111      378999999999999999864

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.21  E-value=2e-10  Score=105.24  Aligned_cols=131  Identities=13%  Similarity=0.082  Sum_probs=87.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh--h---hhhccCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF--R---SIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~--~---~~~~~~~~~  303 (420)
                      .+..|||+|||+|.++..+++.+ +..+++|+|+|+.+           ...|+.++++|+.+..  .   ..+  +++.
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~--~~~~   98 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERV--GDDK   98 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHh--CCCC
Confidence            46889999999999999999886 67799999999864           2357889999986531  1   112  3567


Q ss_pred             EeEEEEeCCCCC---CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecc
Q 014711          304 LILVSIQCPNPD---FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD  374 (420)
Q Consensus       304 ~d~i~~~fpdp~---~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D  374 (420)
                      +|.|+++.+.+.   +...|+........+++.+.++|+|||++++......-...+.+.+++. +....+.+|
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~~~~~~~~  171 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FEKVKVTKP  171 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hceEEEeCC
Confidence            999998653221   1111221111235789999999999999999754433334455555554 433444444

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.21  E-value=2.4e-10  Score=110.56  Aligned_cols=114  Identities=12%  Similarity=0.077  Sum_probs=89.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|..+..+|+... ...++++|+++.+++.+++++++.++.|+.+++.|+..+. .    ...+||.|+
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~----~~~~fD~Vl  145 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-A----AVPKFDAIL  145 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-h----hccCCCEEE
Confidence            467899999999999999998854 4699999999999999999999999999999999997752 1    234699998


Q ss_pred             EeCCCCCCCC----cch-------hhh-----hhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          309 IQCPNPDFNR----PEH-------RWR-----MVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       309 ~~fpdp~~k~----~~~-------k~R-----l~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      +.-  |+.-.    +++       ...     ..+.++|+.+.+.|||||+++..|-.
T Consensus       146 ~D~--Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       146 LDA--PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             EcC--CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            862  22111    111       111     13567999999999999999988743

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=3.3e-10  Score=116.87  Aligned_cols=116  Identities=16%  Similarity=0.197  Sum_probs=89.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||+|||+|..+..+++..++..++|+|+|+.+++.+++++.+.|+. ++++++|+.+. ..++  .+.+||.|++
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~-~~~~--~~~~fD~Vl~  319 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDP-AQWW--DGQPFDRILL  319 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccc-hhhc--ccCCCCEEEE
Confidence            467899999999999999999987789999999999999999999988875 78999999865 2222  3567999987


Q ss_pred             eCCC---------CCCCCcchhh-----hhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPN---------PDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpd---------p~~k~~~~k~-----Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +-|-         |..+......     .-.+.++|+.+.+.|||||++++.|.
T Consensus       320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            6331         1000000000     12346899999999999999998873

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=3.8e-10  Score=116.45  Aligned_cols=116  Identities=13%  Similarity=0.133  Sum_probs=90.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||+|||+|..+..+|+.. +..+++++|+|+.+++.+++++.+.|++|+.++++|+..+ +..   .+++||.|+
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~~~---~~~~fD~Vl  312 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-TEY---VQDTFDRIL  312 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-hhh---hhccCCEEE
Confidence            46789999999999999999885 5789999999999999999999999999999999999876 222   256799998


Q ss_pred             EeCCCC----CCCCcchhh--------hh--hHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCPNP----DFNRPEHRW--------RM--VQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp----~~k~~~~k~--------Rl--~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +.-|--    +.++.+.+.        ++  .+.++|..+.+.|||||.++..|-
T Consensus       313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  367 (431)
T PRK14903        313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC  367 (431)
T ss_pred             ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            853210    011111111        11  457889999999999999999874

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.19  E-value=7.7e-11  Score=110.34  Aligned_cols=102  Identities=18%  Similarity=0.075  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH------------hCCCcEEEEEcChhhhhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~------------~~l~nv~~~~~Da~~~~~~~~  297 (420)
                      ++.++||+|||.|..++.||++  ..+|+|+|+|+.+++.+.+....            ....+++++++|+.++.... 
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-  110 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD-  110 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence            4679999999999999999987  78999999999999987543211            01236999999998762111 


Q ss_pred             ccCCCeEeEEEE-----eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          298 ASYPGKLILVSI-----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       298 ~~~~~~~d~i~~-----~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                         .+.||.|+-     ++| |          -.++++++.+.++|||||++++.+
T Consensus       111 ---~~~fD~i~D~~~~~~l~-~----------~~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       111 ---LGPVDAVYDRAALIALP-E----------EMRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             ---CCCcCEEEechhhccCC-H----------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence               234555542     221 1          123579999999999999866653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02366 spermidine synthase

Probab=99.19  E-value=4.6e-10  Score=110.60  Aligned_cols=129  Identities=15%  Similarity=0.176  Sum_probs=99.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--CC--CcEEEEEcChhhhhhhhhccCCCeE
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--~l--~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++..+||+||||.|..+..+++..+..+++.+|+++.+++.|++.....  ++  ++++++++|+..++.+.   +++.|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---~~~~y  166 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---PEGTY  166 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---cCCCC
Confidence            3568899999999999999987633468999999999999999987543  22  46999999998875431   25689


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      |.|++..++|+.    +...+..++|++.+.++|+|||.+..++..    ......+.+.+.+.
T Consensus       167 DvIi~D~~dp~~----~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~  226 (308)
T PLN02366        167 DAIIVDSSDPVG----PAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET  226 (308)
T ss_pred             CEEEEcCCCCCC----chhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH
Confidence            999998888863    234567789999999999999999886553    33334455555554

>PRK03612 spermidine synthase; Provisional

Probab=99.19  E-value=3.3e-10  Score=119.60  Aligned_cols=130  Identities=15%  Similarity=0.200  Sum_probs=101.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHh--HHh-----CCCcEEEEEcChhhhhhhhhccC
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSL--QLS-----GITNGYFIATNATSTFRSIVASY  300 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~--~~~-----~l~nv~~~~~Da~~~~~~~~~~~  300 (420)
                      +++.+|||||||+|..+..+++ +|. .+++++|+++++++.|+++.  ...     .-++++++++|+.+++..    .
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----L  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----C
Confidence            3567899999999999999887 455 79999999999999999842  211     125799999999987532    3


Q ss_pred             CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHcCC
Q 014711          301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGK  366 (420)
Q Consensus       301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~g~  366 (420)
                      +++||.|++.+|+|+...   ..++...+|++.+.+.|+|||.+++++..    ...+..+.+.+++.|+
T Consensus       371 ~~~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        371 AEKFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CCCCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            568999999998886221   13466779999999999999999997642    3445567788888877

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.19  E-value=2.6e-10  Score=108.33  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc-CCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~-~~~~~d~  306 (420)
                      ...+|||||||+|..++.+|+..| +.+++++|+++++++.|++++.+.++. +++++++|+.+.++...+. +.++||.
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~  147 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF  147 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence            357899999999999999998854 789999999999999999999999986 5999999999886554321 2468999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      |++.   .. | .      .+..+++.+.+.|+|||.+++
T Consensus       148 VfiD---a~-k-~------~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        148 AFVD---AD-K-P------NYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             EEEC---CC-H-H------HHHHHHHHHHHhcCCCeEEEE
Confidence            9884   22 1 0      124788999999999999886

>PTZ00146 fibrillarin; Provisional

Probab=99.18  E-value=7.8e-10  Score=107.28  Aligned_cols=127  Identities=13%  Similarity=0.094  Sum_probs=90.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||+|||+|.++..+|+.. |...|+++|+|+.+.+...+.+...  +|+.++..|+..-.. + .....++|.|+
T Consensus       132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~-y-~~~~~~vDvV~  207 (293)
T PTZ00146        132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQK-Y-RMLVPMVDVIF  207 (293)
T ss_pred             CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhh-h-hcccCCCCEEE
Confidence            46799999999999999999985 5679999999998765555544322  689999999865311 1 11235799999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-----Cc----HHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----DI----EEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-----d~----~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +...+|+     +     ...++..+.+.|||||.|++..     |.    +..+.+-++.|++.+|...+
T Consensus       208 ~Dva~pd-----q-----~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e  268 (293)
T PTZ00146        208 ADVAQPD-----Q-----ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKE  268 (293)
T ss_pred             EeCCCcc-----h-----HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEE
Confidence            8876655     1     1245667899999999999852     22    22222334788888888654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.18  E-value=2.4e-10  Score=106.77  Aligned_cols=99  Identities=15%  Similarity=0.160  Sum_probs=81.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.++..+++..  .+++++|+++.+++.|++++.+.++.|+.+.++|+.+.++     ..++||.|++
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~I~~  150 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-----AYAPFDRILV  150 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-----cCCCcCEEEE
Confidence            46789999999999999888875  4799999999999999999999999999999999865421     2468999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ..+-+              .+.+.+.+.|+|||.+++...
T Consensus       151 ~~~~~--------------~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        151 TAAAP--------------EIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             ccCch--------------hhhHHHHHhcCCCcEEEEEEc
Confidence            64322              334567889999999998764

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.18  E-value=3.4e-10  Score=103.73  Aligned_cols=104  Identities=11%  Similarity=0.126  Sum_probs=78.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.++||+|||.|..++.||++  +..|+++|+|+.+++.+++.+++.+++ ++..+.|+.+..      .+..+|.|+.
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~------~~~~yD~I~s  100 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD------FPEEYDFIVS  100 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-------TTTEEEEEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc------ccCCcCEEEE
Confidence            3678999999999999999999  889999999999999999999888886 999999987651      2567999875


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-.+      -.|-..+++++.+.+.++|||++++.+
T Consensus       101 t~v~~f------L~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen  101 TVVFMF------LQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             ESSGGG------S-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEecc------CCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            311111      111123689999999999999988854

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.18  E-value=3.2e-10  Score=105.91  Aligned_cols=133  Identities=11%  Similarity=0.088  Sum_probs=85.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh--hhhh-ccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF--RSIV-ASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~--~~~~-~~~~~~~d  305 (420)
                      ++..|||||||+|.++..+++.. +...|+|+|+++ +          ....|+.++++|+.+..  +... +..+.++|
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ  119 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence            46789999999999999999985 567999999998 1          23467999999998741  1110 11467899


Q ss_pred             EEEEeCCCCCCCCc--chhh-hhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecc
Q 014711          306 LVSIQCPNPDFNRP--EHRW-RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD  374 (420)
Q Consensus       306 ~i~~~fpdp~~k~~--~~k~-Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D  374 (420)
                      .|+.+....|.-..  +..+ -.....+|+.+.++|||||.|++.+-....+.+....++. .|....+.+|
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~~v~~~Kp  190 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKP  190 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-CceEEEEECC
Confidence            99886522221111  1100 0012478999999999999999965222222233344433 3555555555

>PHA03411 putative methyltransferase; Provisional

Probab=99.17  E-value=3.6e-10  Score=108.53  Aligned_cols=124  Identities=14%  Similarity=0.055  Sum_probs=93.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ..+|||+|||+|.+++.++++.+..+++|+|+++.+++.|+++.     +++.++++|+.++.      .+..||.|+++
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~------~~~kFDlIIsN  133 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFE------SNEKFDVVISN  133 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhc------ccCCCcEEEEc
Confidence            46799999999999999998887789999999999999998763     47899999998762      25679999997


Q ss_pred             CCCCCCCCcchhh----hh----------hHHHHHHHHHhhccCCeEEEEEeCcHHHH------HHHHHHHHHcCCc
Q 014711          311 CPNPDFNRPEHRW----RM----------VQRSLVEAVSDLLVHDGKVFLQSDIEEVM------LRMKQQFLEYGKG  367 (420)
Q Consensus       311 fpdp~~k~~~~k~----Rl----------~~~~~l~~i~~~LkpgG~l~~~td~~~~~------~~~~~~l~~~g~~  367 (420)
                        .|+......++    +.          .-.+++......|+|+|.+.+.-+..+++      ++-...++++|+.
T Consensus       134 --PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~  208 (279)
T PHA03411        134 --PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV  208 (279)
T ss_pred             --CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence              45533221111    11          12478899999999999988875554442      3455678888864

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.17  E-value=4.1e-10  Score=116.84  Aligned_cols=115  Identities=17%  Similarity=0.063  Sum_probs=88.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||+|||+|..+..+++.. +..+++|+|+|+.+++.+++++.+.|+.|+.++++|+..+.      ++.+||.|+
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~------~~~~fD~Vl  323 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS------PEEQPDAIL  323 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc------cCCCCCEEE
Confidence            46789999999999999999874 45699999999999999999999999999999999998752      356799998


Q ss_pred             EeCCC---------C---CCCCcchhhh--hhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          309 IQCPN---------P---DFNRPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       309 ~~fpd---------p---~~k~~~~k~R--l~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      +.-|-         |   |......-.+  -.+..+|..+.+.|||||++++.|..
T Consensus       324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs  379 (445)
T PRK14904        324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS  379 (445)
T ss_pred             EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            75221         1   1100000000  13467999999999999999998843

>TIGR03438 probable methyltransferase

Probab=99.17  E-value=2.8e-10  Score=112.09  Aligned_cols=114  Identities=12%  Similarity=0.147  Sum_probs=79.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCC-CeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYP-GKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~-~~~d~  306 (420)
                      ++..|||+|||+|..+..|+++.+ ..+|+|+|+|++|++.|++++..... -++.++++|+.+.++ +..... .....
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~  141 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLG  141 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEE
Confidence            357899999999999999999976 58999999999999999998765431 257889999987522 111000 11222


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      +++..+-.++.   +.   -..++|+++++.|+|||.|++..|.
T Consensus       142 ~~~gs~~~~~~---~~---e~~~~L~~i~~~L~pgG~~lig~d~  179 (301)
T TIGR03438       142 FFPGSTIGNFT---PE---EAVAFLRRIRQLLGPGGGLLIGVDL  179 (301)
T ss_pred             EEecccccCCC---HH---HHHHHHHHHHHhcCCCCEEEEeccC
Confidence            22222222211   11   1247999999999999999987654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK05785 hypothetical protein; Provisional

Probab=99.17  E-value=3.1e-10  Score=107.29  Aligned_cols=90  Identities=7%  Similarity=0.021  Sum_probs=71.7

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +..|||||||+|.++..+++.+ +.+++|+|+|++|++.|+++.        .++++|+.++     |+++++||.|++.
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l-----p~~d~sfD~v~~~  117 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL-----PFRDKSFDVVMSS  117 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC-----CCCCCCEEEEEec
Confidence            5789999999999999999887 579999999999999997641        3578888775     3368999999987


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG  342 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG  342 (420)
                      |.-.+..+        .++.+++++|+|||..
T Consensus       118 ~~l~~~~d--------~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        118 FALHASDN--------IEKVIAEFTRVSRKQV  141 (226)
T ss_pred             ChhhccCC--------HHHHHHHHHHHhcCce
Confidence            64322111        1479999999999953

>TIGR00417 speE spermidine synthase

Probab=99.16  E-value=6e-10  Score=108.13  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=91.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC----CCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~----l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+||+||||+|.++..+++..+..+++++|+++.+++.|++.....+    -.+++++.+|+..++..    .+++||
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~yD  147 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENTFD  147 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCCcc
Confidence            4569999999999999999887667899999999999999999875432    24689999999887542    357899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      .|++..++|+..    ...+...++++.+.+.|+|||.+++.+..
T Consensus       148 vIi~D~~~~~~~----~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       148 VIIVDSTDPVGP----AETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             EEEEeCCCCCCc----ccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            999987777522    22355679999999999999999997654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.15  E-value=2.8e-10  Score=104.32  Aligned_cols=124  Identities=17%  Similarity=0.198  Sum_probs=92.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ....|||||||+|..+..|...  ...++|+|||+.|++.|.++--+     -.++.+|+-.-+    |+.+++||.++.
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-----gdlil~DMG~Gl----pfrpGtFDg~IS  118 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-----GDLILCDMGEGL----PFRPGTFDGVIS  118 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-----cCeeeeecCCCC----CCCCCccceEEE
Confidence            4678999999999999998876  68999999999999999874222     256777876553    557899998754


Q ss_pred             eCCCCC-----CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe--CcHHHHHHHHHHHHHcCC
Q 014711          310 QCPNPD-----FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGK  366 (420)
Q Consensus       310 ~fpdp~-----~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t--d~~~~~~~~~~~l~~~g~  366 (420)
                      .-.-.|     ....++++|+.  .|+..++.+|++|++.+++.  .++.+.+.+.+.-...||
T Consensus       119 ISAvQWLcnA~~s~~~P~~Rl~--~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF  180 (270)
T KOG1541|consen  119 ISAVQWLCNADKSLHVPKKRLL--RFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF  180 (270)
T ss_pred             eeeeeeecccCccccChHHHHH--HHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence            332233     23345777885  79999999999999988875  455566656665555564

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.14  E-value=5.1e-10  Score=104.35  Aligned_cols=104  Identities=14%  Similarity=0.206  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.++..+++..|. .+++|+|+++.++..++++..  ...+++++++|+.+..   +  .++.+|.|+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~---~--~~~~~D~i~  111 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP---F--EDNSFDAVT  111 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC---C--CCCcEEEEE
Confidence            4679999999999999999999887 799999999999999998865  3457999999998752   2  456899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +++.-.+...        ...+++.+.+.|+|||++++..
T Consensus       112 ~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       112 IAFGLRNVTD--------IQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EeeeeCCccc--------HHHHHHHHHHHcCCCcEEEEEE
Confidence            7643221111        1378999999999999998753

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.14  E-value=7.4e-10  Score=102.51  Aligned_cols=107  Identities=16%  Similarity=0.170  Sum_probs=82.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.++||+|||+|.+++.++.+. ..+++++|+++.+++.+++|++..++.|++++++|+.+.+..    ...++|.|++
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~~  127 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVFV  127 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEEE
Confidence            35789999999999999755554 368999999999999999999999988999999999876421    2456999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHh--hccCCeEEEEEeCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~--~LkpgG~l~~~td~  350 (420)
                      +  .|+.+.       +.+..++.+..  +|+|++.+++++..
T Consensus       128 D--PPy~~g-------~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        128 D--PPFRKG-------LLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             C--CCCCCC-------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            6  343222       12355565555  48999999998743

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.14  E-value=5.3e-10  Score=105.40  Aligned_cols=104  Identities=16%  Similarity=0.236  Sum_probs=83.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +.+|||+|||+|.++..+++..| +.+++|+|+++.+++.+++++...+. .++.++++|+.+..   +  .++++|.|+
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~--~~~~~D~I~  126 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP---F--PDNSFDAVT  126 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC---C--CCCCccEEE
Confidence            57899999999999999999987 78999999999999999999876554 46999999997751   1  356899997


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +.+.-.+...        ...+++.+.+.|+|||.+++.
T Consensus       127 ~~~~l~~~~~--------~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        127 IAFGLRNVPD--------IDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             EecccccCCC--------HHHHHHHHHHhccCCcEEEEE
Confidence            7532211111        137899999999999998774

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.13  E-value=4.9e-10  Score=111.02  Aligned_cols=101  Identities=17%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+|+..+. ..++|+|+++++++.|++++.+.+..|+.++++|+.....     ...++|.|+
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii  154 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIF  154 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEE
Confidence            3678999999999999999998753 5799999999999999999999999999999999876531     235799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +.+.-+              .....+.+.|+|||.+++..+
T Consensus       155 ~~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        155 VTVGVD--------------EVPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             ECCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence            863221              233456789999999988654

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.13  E-value=8.7e-11  Score=110.45  Aligned_cols=100  Identities=19%  Similarity=0.372  Sum_probs=79.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC------cEEEEEcChhhhhhhhhccCCCeE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT------NGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~------nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      +..|||+|||.|.++..||+.  ..+|+|||+++++++.|++.....-..      .+.+.+.|++..        .+.|
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--------~~~f  159 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--------TGKF  159 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------cccc
Confidence            466999999999999999998  689999999999999999984432221      266777888765        3459


Q ss_pred             eEEEEe-----CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          305 ILVSIQ-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       305 d~i~~~-----fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      |.|.+.     .-||             ++|++.+.+.|||||.+++.|-+...
T Consensus       160 DaVvcsevleHV~dp-------------~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  160 DAVVCSEVLEHVKDP-------------QEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             ceeeeHHHHHHHhCH-------------HHHHHHHHHHhCCCCceEeeehhhhH
Confidence            999775     1233             48999999999999999998855443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.13  E-value=8.4e-10  Score=103.55  Aligned_cols=151  Identities=15%  Similarity=0.114  Sum_probs=100.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.++||+|||+|.++..+++.  ...++|+|+|++++..|++++...+. .|+.|.++|+...        +.+||.|+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~ii  124 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------CGEFDIVV  124 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--------CCCcCEEE
Confidence            3678999999999999999986  56899999999999999999877765 4799999999765        36799987


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE  388 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~  388 (420)
                      +...-.++...      ....+++++.+.+++++.+.+.. ...+. .....+... +...   ..       .    ..
T Consensus       125 ~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~~~~-~~~~~-~~~~~~~~~-~~~~---~~-------~----~~  181 (219)
T TIGR02021       125 CMDVLIHYPAS------DMAKALGHLASLTKERVIFTFAP-KTAWL-AFLKMIGEL-FPGS---SR-------A----TS  181 (219)
T ss_pred             EhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEEECC-CchHH-HHHHHHHhh-CcCc---cc-------c----cc
Confidence            64221111000      11367888999999887777643 22221 122222221 1100   00       0    00


Q ss_pred             CCCCCCCHHHHHHHHCCCCeEEEEE
Q 014711          389 NSFGVRSDWEQHVIDRGAPMYRLML  413 (420)
Q Consensus       389 ~~~~~~T~~E~~~~~~G~~i~~~~~  413 (420)
                      .-....++++..+...|..+.....
T Consensus       182 ~~~~~~~~~~~~l~~~Gf~v~~~~~  206 (219)
T TIGR02021       182 AYLHPMTDLERALGELGWKIVREGL  206 (219)
T ss_pred             eEEecHHHHHHHHHHcCceeeeeec
Confidence            1123567899999999998877653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.12  E-value=8.8e-10  Score=120.28  Aligned_cols=134  Identities=10%  Similarity=0.168  Sum_probs=101.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||+|||+|.+++.+|+. ....|+++|+|+.+++.|++|+..++++  +++|+++|+.+++..    ...+||.|
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~----~~~~fDlI  612 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE----AREQFDLI  612 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH----cCCCcCEE
Confidence            3678999999999999999986 3457999999999999999999999885  799999999887532    24689999


Q ss_pred             EEeCCCCCCCCcch-----hhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          308 SIQCPNPDFNRPEH-----RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       308 ~~~fpdp~~k~~~~-----k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +++  .|.+.....     ...-...+++..+.+.|+|||.+++.++... +....+.+.+.|+....+
T Consensus       613 ilD--PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~~~~i  678 (702)
T PRK11783        613 FID--PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLKAEEI  678 (702)
T ss_pred             EEC--CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCeEEEE
Confidence            886  332221110     0011235788999999999999999886544 334577788888776544

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.11  E-value=4.3e-10  Score=102.33  Aligned_cols=121  Identities=12%  Similarity=0.211  Sum_probs=85.1

Q ss_pred             cCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       226 f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++++.-..++|+|||.|.++..||.+.  -.++++|+|+.+++.|++++.  +.+||+|++.|+....      +++.||
T Consensus        39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~------P~~~FD  108 (201)
T PF05401_consen   39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW------PEGRFD  108 (201)
T ss_dssp             HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---------SS-EE
T ss_pred             cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC------CCCCee
Confidence            343334679999999999999999994  689999999999999999985  4579999999997753      588999


Q ss_pred             EEEEe----CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc---------HHHHHHHHHHHHHcC
Q 014711          306 LVSIQ----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---------EEVMLRMKQQFLEYG  365 (420)
Q Consensus       306 ~i~~~----fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~---------~~~~~~~~~~l~~~g  365 (420)
                      .|++.    |-++.    .     .-..+++.+...|+|||.+++.+=.         ..=.+.+.++|.++-
T Consensus       109 LIV~SEVlYYL~~~----~-----~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~  172 (201)
T PF05401_consen  109 LIVLSEVLYYLDDA----E-----DLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL  172 (201)
T ss_dssp             EEEEES-GGGSSSH----H-----HHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred             EEEEehHhHcCCCH----H-----HHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence            99875    22221    0     1136889999999999999998621         112455777777763

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.11  E-value=1.1e-09  Score=113.63  Aligned_cols=126  Identities=20%  Similarity=0.239  Sum_probs=95.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||+|||+|.+++.+|+..  ..++|+|+|+.|++.|++++..++++|++|+++|+.+.+... +..+.++|.|++
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~fD~Vi~  373 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ-PWALGGFDKVLL  373 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh-hhhcCCCCEEEE
Confidence            35789999999999999999884  689999999999999999999999999999999998764221 113467999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +  .|+.  .      . .+.++.+.+ |+|++.+++.+|...+...+. .|.+.||....+
T Consensus       374 d--PPr~--g------~-~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~-~L~~~gY~l~~i  422 (443)
T PRK13168        374 D--PPRA--G------A-AEVMQALAK-LGPKRIVYVSCNPATLARDAG-VLVEAGYRLKRA  422 (443)
T ss_pred             C--cCCc--C------h-HHHHHHHHh-cCCCeEEEEEeChHHhhccHH-HHhhCCcEEEEE
Confidence            5  2321  1      1 245555555 799999999987777666555 455667776544

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.11  E-value=5.2e-10  Score=113.71  Aligned_cols=101  Identities=17%  Similarity=0.172  Sum_probs=78.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+|+.+ +.+|+|+|+|+++++.|++++.  ++ ++++...|..++        +++||.|+.
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--------~~~fD~Ivs  234 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--------NGQFDRIVS  234 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--------CCCCCEEEE
Confidence            46799999999999999999875 6799999999999999999874  33 488888887653        467999876


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-.+....      -.+.+++++.++|||||++++.+
T Consensus       235 ~~~~ehvg~~------~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        235 VGMFEHVGPK------NYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             eCchhhCChH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence            5211111000      11478999999999999999864

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.10  E-value=3.5e-10  Score=105.46  Aligned_cols=101  Identities=18%  Similarity=0.236  Sum_probs=79.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..||+. .+...|+++|+.+..++.|++++...+..|+.++++|....++     ....||.|+
T Consensus        72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-----~~apfD~I~  146 (209)
T PF01135_consen   72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-----EEAPFDRII  146 (209)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-----GG-SEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-----cCCCcCEEE
Confidence            4789999999999999999998 4556799999999999999999999999999999999987643     246799999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +...-+              +.-..+.+.|++||++++-..
T Consensus       147 v~~a~~--------------~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  147 VTAAVP--------------EIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             ESSBBS--------------S--HHHHHTEEEEEEEEEEES
T ss_pred             Eeeccc--------------hHHHHHHHhcCCCcEEEEEEc
Confidence            975333              122345668999999998543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.10  E-value=7.3e-10  Score=108.30  Aligned_cols=121  Identities=18%  Similarity=0.295  Sum_probs=87.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||||-+++..++.. ..+++|+|+++.+++.|++|+..+++.+ ++......+.       ....||.|..
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~-------~~~~~dlvvA  231 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL-------VEGKFDLVVA  231 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT-------CCS-EEEEEE
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc-------ccccCCEEEE
Confidence            46799999999999999988873 4589999999999999999999999876 3322222222       3588999999


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      |--.          ..+ ..++..+.+.|+|||+|++.==-....+.+.+.+++ |+.....
T Consensus       232 NI~~----------~vL-~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~  281 (295)
T PF06325_consen  232 NILA----------DVL-LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE  281 (295)
T ss_dssp             ES-H----------HHH-HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred             CCCH----------HHH-HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence            8211          111 367788899999999999963234455678888876 8776543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.09  E-value=1.6e-09  Score=86.59  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=81.4

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  312 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp  312 (420)
                      +++|+|||+|.++..+++ .+..+++++|+++.++..+++.....+..++++++.|..+...  .  ....+|.++++.+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--E--ADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--c--cCCceEEEEEccc
Confidence            379999999999999998 6788999999999999999865545556789999999987632  1  3567999988754


Q ss_pred             CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          313 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       313 dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      -.++       .-....+++.+.+.|+|||.+++.
T Consensus        76 ~~~~-------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHL-------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeeh-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            4331       012248899999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.09  E-value=1.1e-09  Score=103.31  Aligned_cols=118  Identities=14%  Similarity=0.144  Sum_probs=86.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+||+|||+|++++.++..-|.+.++++|.|+.++..|.+|+++.++.+ +..++.++..-...-.+...+.+|.+..
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs  228 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS  228 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence            458999999999999999999999999999999999999999999999876 5555444432211001124678899988


Q ss_pred             eCCCCCCCCcc------------hhhhhh--------HHHHHHHHHhhccCCeEEEEEeCc
Q 014711          310 QCPNPDFNRPE------------HRWRMV--------QRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~fpdp~~k~~~------------~k~Rl~--------~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      |  .|+.++.+            ++..|.        ...++.-+.|.|+|||.+.|+++.
T Consensus       229 N--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~  287 (328)
T KOG2904|consen  229 N--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE  287 (328)
T ss_pred             C--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence            7  45533321            111111        145667788999999999999873

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.08  E-value=2.7e-09  Score=110.31  Aligned_cols=126  Identities=20%  Similarity=0.261  Sum_probs=94.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.+++.+|+..  ..++|+|+++.+++.|++|+..++++|++|+++|+.+.++... ..+.++|.|++
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~-~~~~~~D~vi~  368 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP-WAGQIPDVLLL  368 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-hcCCCCCEEEE
Confidence            35789999999999999999873  5899999999999999999999999999999999988654321 12457899977


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      .   |-.. .      +...+++.+.+ |+|++.+++.++... +..-...|.+.||....
T Consensus       369 d---PPr~-G------~~~~~l~~l~~-l~~~~ivyvsc~p~t-lard~~~l~~~gy~~~~  417 (431)
T TIGR00479       369 D---PPRK-G------CAAEVLRTIIE-LKPERIVYVSCNPAT-LARDLEFLCKEGYGITW  417 (431)
T ss_pred             C---cCCC-C------CCHHHHHHHHh-cCCCEEEEEcCCHHH-HHHHHHHHHHCCeeEEE
Confidence            4   3211 1      12467776654 899999998776444 43345556677776543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.08  E-value=2.3e-09  Score=100.59  Aligned_cols=106  Identities=17%  Similarity=0.222  Sum_probs=82.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +..|||+|||+|.++..+++..  ..++|+|+++.++..+++++...+..++++.+.|+.++...    .++++|.|++.
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~i~~~  119 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK----GAKSFDVVTCM  119 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC----CCCCccEEEeh
Confidence            5789999999999999998874  46999999999999999998877766799999999876311    24689999875


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      ..-.+.  ..+      ..+++.+.+.|+|||.+++.+..
T Consensus       120 ~~l~~~--~~~------~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       120 EVLEHV--PDP------QAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             hHHHhC--CCH------HHHHHHHHHhcCCCcEEEEEecC
Confidence            321111  111      37899999999999999987643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.08  E-value=3.1e-10  Score=109.78  Aligned_cols=107  Identities=18%  Similarity=0.219  Sum_probs=76.8

Q ss_pred             CCEEEEEcCCccH----HHHHHHHhCC-----CCeEEEEeCChHHHHHHHHHhHH----hC-------------------
Q 014711          231 QPLVVDIGSGNGL----FLLGMARKRK-----DLNFLGLEVNGKLVTHCRDSLQL----SG-------------------  278 (420)
Q Consensus       231 ~~~vLDIGcG~G~----~~~~lA~~~P-----~~~viGiDis~~~i~~A~~~~~~----~~-------------------  278 (420)
                      +.+|+|+|||+|.    +++.+++..|     +..++|+|+|+.|++.|++.+-.    .+                   
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            4689999999997    4555666554     57899999999999999985310    01                   


Q ss_pred             ---C-CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          279 ---I-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       279 ---l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                         + .+|+|.+.|+.+..   +  ++++||.|++...-.++..      -...++++.+++.|+|||+|++..
T Consensus       180 ~~~ir~~V~F~~~dl~~~~---~--~~~~fD~I~crnvl~yf~~------~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      180 KPELKERVRFAKHNLLAES---P--PLGDFDLIFCRNVLIYFDE------PTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             ChHHhCcCEEeeccCCCCC---C--ccCCCCEEEechhHHhCCH------HHHHHHHHHHHHHhCCCeEEEEEC
Confidence               1 36899999998751   1  3678999987422111111      012479999999999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.9e-09  Score=95.02  Aligned_cols=134  Identities=16%  Similarity=0.188  Sum_probs=104.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +...++|||||+|..+..|++. -|+..+++.|+++.+++...+.+..++. ++..++.|....+      ..+++|.+.
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l------~~~~VDvLv  115 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGL------RNESVDVLV  115 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhh------ccCCccEEE
Confidence            3678999999999999999887 6899999999999999999998877665 4889999998775      358999998


Q ss_pred             EeCC---CCC-CCC---------cchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCP---NPD-FNR---------PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fp---dp~-~k~---------~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +|=|   .+. +..         ....-|-+..+++.++...|.|.|.|++.+-..+-.+++...++..+|....
T Consensus       116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~  190 (209)
T KOG3191|consen  116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRI  190 (209)
T ss_pred             ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeE
Confidence            8721   111 110         0011233446899999999999999999876666677888889998887643

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.08  E-value=1.9e-09  Score=100.18  Aligned_cols=106  Identities=19%  Similarity=0.227  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccC-CCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASY-PGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~-~~~~d~  306 (420)
                      ....||||||++|..++.+|+..| +.+++.+|++++..+.|++++.+.|+. +++++.+|+.+.++...+.. .+.||.
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~  124 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF  124 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence            367899999999999999999876 589999999999999999999999985 69999999999876654311 358999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      ||+.   .+  +.      -+..+++.+.+.|+|||.+++
T Consensus       125 VFiD---a~--K~------~y~~y~~~~~~ll~~ggvii~  153 (205)
T PF01596_consen  125 VFID---AD--KR------NYLEYFEKALPLLRPGGVIIA  153 (205)
T ss_dssp             EEEE---ST--GG------GHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEc---cc--cc------chhhHHHHHhhhccCCeEEEE
Confidence            9885   22  11      234788999999999999988

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.08  E-value=1.6e-09  Score=107.38  Aligned_cols=121  Identities=17%  Similarity=0.202  Sum_probs=90.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|.+++.+|+.  ..+++|+|+|+.+++.|++++..++++|++|+++|+.++...    ....+|.|+++
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~d  247 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLVN  247 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEEC
Confidence            578999999999999999985  579999999999999999999999998999999999886421    23468999886


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                        .|.  ..      ..+.+++.+ ..++|++.+++.++...+...... +  .||....+
T Consensus       248 --PPr--~G------~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~-l--~~y~~~~~  294 (315)
T PRK03522        248 --PPR--RG------IGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAH-L--PGYRIERV  294 (315)
T ss_pred             --CCC--CC------ccHHHHHHH-HHcCCCeEEEEECCcccchhHHhh-c--cCcEEEEE
Confidence              221  11      112343333 447899999998877776665544 3  46665443

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.06  E-value=4.3e-10  Score=105.68  Aligned_cols=100  Identities=18%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH------------hCCCcEEEEEcChhhhhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~------------~~l~nv~~~~~Da~~~~~~~~  297 (420)
                      ++.+|||+|||.|..++.||++  +.+|+|+|+|+.+++.+.+....            ....++++.++|+.++...  
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~--  112 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA--  112 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence            4579999999999999999987  78999999999999987542110            0124689999999887321  


Q ss_pred             ccCCCeEeEEE-----EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          298 ASYPGKLILVS-----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       298 ~~~~~~~d~i~-----~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                        ....||.|+     +.+| |       .   .+++++..+.++|+|||++++
T Consensus       113 --~~~~fd~v~D~~~~~~l~-~-------~---~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        113 --DLADVDAVYDRAALIALP-E-------E---MRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             --cCCCeeEEEehHhHhhCC-H-------H---HHHHHHHHHHHHcCCCCeEEE
Confidence              124677775     2221 1       1   235899999999999997555

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.06  E-value=4e-09  Score=107.02  Aligned_cols=121  Identities=17%  Similarity=0.207  Sum_probs=94.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.++||+|||+|.+++.+|..  ...++|+|+++.+++.|++|+..++++|++|+++|+.+++..    ...++|.|+++
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~vi~D  307 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA----QMSAPELVLVN  307 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----cCCCCCEEEEC
Confidence            468999999999999999965  578999999999999999999999999999999999876432    12458998775


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                        .|. ..       ..+.+++.+. .++|++.+++.++...+...+...   .||....+
T Consensus       308 --PPr-~G-------~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~  354 (374)
T TIGR02085       308 --PPR-RG-------IGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERV  354 (374)
T ss_pred             --CCC-CC-------CcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence              232 11       2236666665 479999999999877777766654   57766544

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.06  E-value=5.4e-10  Score=98.61  Aligned_cols=96  Identities=20%  Similarity=0.316  Sum_probs=71.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.++..+++..  .+++|+|+|+.+++.          .++.+...+.....   .  ++++||.|++
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~---~--~~~~fD~i~~   84 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK----------RNVVFDNFDAQDPP---F--PDGSFDLIIC   84 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH----------TTSEEEEEECHTHH---C--HSSSEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh----------hhhhhhhhhhhhhh---c--cccchhhHhh
Confidence            57899999999999999997763  399999999999987          23344444443321   1  4789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      +..-.|..+  +      ..+|+.+.+.|||||++++.+..
T Consensus        85 ~~~l~~~~d--~------~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   85 NDVLEHLPD--P------EEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             ESSGGGSSH--H------HHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             HHHHhhccc--H------HHHHHHHHHhcCCCCEEEEEEcC
Confidence            843333221  1      38999999999999999998744

...

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=8.5e-10  Score=101.60  Aligned_cols=99  Identities=19%  Similarity=0.259  Sum_probs=82.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||||||+|..+.-||+..  .+|+.+|+.++..+.|++++...|+.||.+.++|...-++     ....||.|++
T Consensus        72 ~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-----~~aPyD~I~V  144 (209)
T COG2518          72 PGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-----EEAPYDRIIV  144 (209)
T ss_pred             CCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-----CCCCcCEEEE
Confidence            47899999999999999999984  3999999999999999999999999999999999988743     3578999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      .-.-|.              .=+.+.+.||+||++++-..
T Consensus       145 taaa~~--------------vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         145 TAAAPE--------------VPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             eeccCC--------------CCHHHHHhcccCCEEEEEEc
Confidence            743221              11234568999999998654

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.05  E-value=8.9e-09  Score=101.78  Aligned_cols=136  Identities=13%  Similarity=0.158  Sum_probs=95.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-CCC-cEEEEE-cChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GIT-NGYFIA-TNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-~l~-nv~~~~-~Da~~~~~~~~~~~~~~~d~  306 (420)
                      ....+||||||+|++...|+.+.++++++|+|+++.+++.|+++++.+ ++. ++.+.+ .|..+++.... ...+.||.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceEE
Confidence            357899999999999999999989999999999999999999999998 676 477754 55555432221 13568999


Q ss_pred             EEEeCCCCCCCCcch-------hhhhhH--------HHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          307 VSIQCPNPDFNRPEH-------RWRMVQ--------RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       307 i~~~fpdp~~k~~~~-------k~Rl~~--------~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      |++|  .|++.....       +.|-+.        -.|=....+.+.+||.+.|..   .+.++..+...+.+|+..-+
T Consensus       193 ivcN--PPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~---~mi~eS~~~~~~~gwftsmv  267 (321)
T PRK11727        193 TLCN--PPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIK---RMIEESKAFAKQVLWFTSLV  267 (321)
T ss_pred             EEeC--CCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeeh---HhhHHHHHHHhhCcEEEEEe
Confidence            9998  666544322       111000        011123456678999988754   35556677777888776544

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.04  E-value=1.8e-09  Score=100.49  Aligned_cols=98  Identities=14%  Similarity=0.107  Sum_probs=72.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||||||+|.++..|++..|..+++|+|+|+.+++.|+++.     .++.+.++|+.+.    +  ++++||.|++
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~----~--~~~sfD~V~~  111 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP----F--KDNFFDLVLT  111 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC----C--CCCCEEEEEE
Confidence            356799999999999999999888999999999999999998764     3577888888652    2  5789999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      +..-.+..   +   -...++++++.+++  ++++++
T Consensus       112 ~~vL~hl~---p---~~~~~~l~el~r~~--~~~v~i  140 (204)
T TIGR03587       112 KGVLIHIN---P---DNLPTAYRELYRCS--NRYILI  140 (204)
T ss_pred             CChhhhCC---H---HHHHHHHHHHHhhc--CcEEEE
Confidence            63221110   0   01137888888887  345544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.04  E-value=2.5e-09  Score=99.76  Aligned_cols=103  Identities=20%  Similarity=0.251  Sum_probs=89.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEE-cChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIA-TNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~-~Da~~~~~~~~~~~~~~~d~  306 (420)
                      ...++||||++.|.+++.||..-| +.+++.+|+++++.+.|+++.++.|+.+ +.++. +|+.+.+.. .  ..++||.
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~--~~~~fDl  135 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-L--LDGSFDL  135 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-c--cCCCccE
Confidence            468899999999999999999988 8899999999999999999999999987 88888 599988654 2  4789999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      ||+.   .+  +.      .++++++.+.+.|+|||.+++
T Consensus       136 iFID---ad--K~------~yp~~le~~~~lLr~GGliv~  164 (219)
T COG4122         136 VFID---AD--KA------DYPEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             EEEe---CC--hh------hCHHHHHHHHHHhCCCcEEEE
Confidence            9884   32  11      246999999999999999987

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.04  E-value=1.2e-09  Score=114.25  Aligned_cols=105  Identities=19%  Similarity=0.229  Sum_probs=79.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..+||||||+|.++..+++..  .+++|+|+|+.+++.+++..  ...+|+.++++|+....   ++.++++||.|++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~---~~~~~~~fD~I~~  109 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPD---LNISDGSVDLIFS  109 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccc---cCCCCCCEEEEeh
Confidence            35789999999999999999884  58999999999998876532  23468999999996431   1225678999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-.+.....      -.++++++.++|||||++++.
T Consensus       110 ~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        110 NWLLMYLSDKE------VENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             hhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEEE
Confidence            75433321110      147999999999999999884

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.03  E-value=3.8e-09  Score=109.03  Aligned_cols=117  Identities=13%  Similarity=0.212  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||+|||+|..+..+++..++.+++|+|+++.+++.+++++++.|+. ++.+.++|+... ..+.  .+.+||.|+
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~--~~~~fD~Vl  314 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWA--ENEQFDRIL  314 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccc--cccccCEEE
Confidence            468999999999999999999888889999999999999999999998886 244477777543 1111  356799998


Q ss_pred             EeCC---------CCCC---CCcchhhh--hhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCP---------NPDF---NRPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fp---------dp~~---k~~~~k~R--l~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +.-|         .|..   ...+.-.+  -++.++|+.+.+.|||||+++..|-
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            7521         1110   00000001  1357899999999999999998863

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN02476 O-methyltransferase

Probab=99.03  E-value=4e-09  Score=102.06  Aligned_cols=106  Identities=12%  Similarity=0.183  Sum_probs=88.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc-CCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~-~~~~~d~  306 (420)
                      ...+||||||++|.+++.+|+..| +..++.+|.+++.++.|++++++.|+. +++++.+|+.+.++..... .+++||.
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~  197 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF  197 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence            367899999999999999998864 678999999999999999999999987 6999999999987654311 1368999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      |++   |++ | .      -++.+++.+.+.|+|||.+++
T Consensus       198 VFI---Da~-K-~------~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        198 AFV---DAD-K-R------MYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             EEE---CCC-H-H------HHHHHHHHHHHhcCCCcEEEE
Confidence            987   454 1 1      235889999999999999887

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.01  E-value=6.7e-09  Score=97.72  Aligned_cols=151  Identities=11%  Similarity=0.089  Sum_probs=93.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||||||+|.++..+++..  ..++|+|+|+.+++.|+++....+. .++.+..+|...        .+++||.|+
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~v~  132 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDTVV  132 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCEEE
Confidence            46789999999999999999874  4699999999999999999887776 579999999432        256899997


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE  388 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~  388 (420)
                      +...-.++....      ....++.+.+.+++++.+.+ ........ ....+..  +...   .+      +.    ..
T Consensus       133 ~~~~l~~~~~~~------~~~~l~~l~~~~~~~~~i~~-~~~~~~~~-~~~~l~~--~~~~---~~------~~----~~  189 (230)
T PRK07580        133 CLDVLIHYPQED------AARMLAHLASLTRGSLIFTF-APYTPLLA-LLHWIGG--LFPG---PS------RT----TR  189 (230)
T ss_pred             EcchhhcCCHHH------HHHHHHHHHhhcCCeEEEEE-CCccHHHH-HHHHhcc--ccCC---cc------CC----CC
Confidence            752211111100      13677777777655554443 22222111 1111111  1100   00      00    01


Q ss_pred             CCCCCCCHHHHHHHHCCCCeEEEEE
Q 014711          389 NSFGVRSDWEQHVIDRGAPMYRLML  413 (420)
Q Consensus       389 ~~~~~~T~~E~~~~~~G~~i~~~~~  413 (420)
                      .......+++..+.+.|..+.+..-
T Consensus       190 ~~~~~~~~~~~~l~~~Gf~~~~~~~  214 (230)
T PRK07580        190 IYPHREKGIRRALAAAGFKVVRTER  214 (230)
T ss_pred             ccccCHHHHHHHHHHCCCceEeeee
Confidence            1234567788888888888877554

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.99  E-value=1e-09  Score=99.76  Aligned_cols=104  Identities=15%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEE-EEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~-~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+||||||+|..-.-+-- -|...++++|.++.|-+.|.+++.+....++. |+.++++++ ++ +  +++++|.|..
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~-l--~d~s~DtVV~  151 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQ-L--ADGSYDTVVC  151 (252)
T ss_pred             ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cc-c--ccCCeeeEEE
Confidence            35589999999987654432 36789999999999999999999888777866 999999988 32 2  6899999854


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|.-.-..+.        .+.|+++.++|+|||+++|.
T Consensus       152 TlvLCSve~~--------~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  152 TLVLCSVEDP--------VKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             EEEEeccCCH--------HHHHHHHHHhcCCCcEEEEE
Confidence            4321111110        27899999999999998874

>PRK06202 hypothetical protein; Provisional

Probab=98.98  E-value=3.9e-09  Score=99.96  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      .+.+|||||||+|.++..|++.    .|+.+++|+|+|+.|++.|+++...   .|+.+.+.++..+ +    ..++++|
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~l-~----~~~~~fD  131 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDEL-V----AEGERFD  131 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---CCCeEEEEecccc-c----ccCCCcc
Confidence            4578999999999999888864    4667999999999999999887543   3466666666544 1    1467899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      .|++++.--+..+.      ...++++++.++++  |.+++
T Consensus       132 ~V~~~~~lhh~~d~------~~~~~l~~~~r~~~--~~~~i  164 (232)
T PRK06202        132 VVTSNHFLHHLDDA------EVVRLLADSAALAR--RLVLH  164 (232)
T ss_pred             EEEECCeeecCChH------HHHHHHHHHHHhcC--eeEEE
Confidence            99887532221111      01379999999998  44444

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.95  E-value=2.2e-08  Score=99.03  Aligned_cols=71  Identities=20%  Similarity=0.181  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-----CCcEEEEEcChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-----l~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      .+.+|||+|||+|.++..+++.  ..+++|+|+|+.|++.|++++...+     ..++.|.+.|+.++        +++|
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--------~~~f  213 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--------SGKY  213 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--------CCCc
Confidence            3579999999999999999987  6799999999999999999987642     34688999997543        4678


Q ss_pred             eEEEEe
Q 014711          305 ILVSIQ  310 (420)
Q Consensus       305 d~i~~~  310 (420)
                      |.|++.
T Consensus       214 D~Vv~~  219 (315)
T PLN02585        214 DTVTCL  219 (315)
T ss_pred             CEEEEc
Confidence            988654

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.93  E-value=2e-08  Score=101.48  Aligned_cols=123  Identities=15%  Similarity=0.189  Sum_probs=91.1

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccC-----------
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY-----------  300 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~-----------  300 (420)
                      ..+||++||+|.+++.+++..  ..++|+|+++.+++.|++|+..++++|++|+++|+.++++......           
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            469999999999999999885  4899999999999999999999999999999999998764321100           


Q ss_pred             CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ...+|.|++   ||-.. .      +.+.+++.+.+   |++.+|+.+|...+...+.... + ||....+
T Consensus       286 ~~~~D~v~l---DPPR~-G------~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v  341 (362)
T PRK05031        286 SYNFSTIFV---DPPRA-G------LDDETLKLVQA---YERILYISCNPETLCENLETLS-Q-THKVERF  341 (362)
T ss_pred             CCCCCEEEE---CCCCC-C------CcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEE
Confidence            124788877   55322 1      22356666654   7899999988767666555443 3 6765443

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.9e-08  Score=90.71  Aligned_cols=119  Identities=15%  Similarity=0.200  Sum_probs=86.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|+|+|||||.+++..+...| ..|+|+|+++++++.+++|+.+ ...++.|+++|+.++        ...+|.+..
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~--------~~~~dtvim  114 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF--------RGKFDTVIM  114 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc--------CCccceEEE
Confidence            578899999999999999887654 6899999999999999999988 556899999999886        567887777


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      |  .||=.++.|..    ..||....+.-   -.++-.. ...+.+.+......+|...
T Consensus       115 N--PPFG~~~rhaD----r~Fl~~Ale~s---~vVYsiH-~a~~~~f~~~~~~~~G~~v  163 (198)
T COG2263         115 N--PPFGSQRRHAD----RPFLLKALEIS---DVVYSIH-KAGSRDFVEKFAADLGGTV  163 (198)
T ss_pred             C--CCCccccccCC----HHHHHHHHHhh---heEEEee-ccccHHHHHHHHHhcCCeE
Confidence            6  56533322222    36666555543   2333222 2335566777888888664

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.93  E-value=2.7e-08  Score=90.41  Aligned_cols=152  Identities=14%  Similarity=0.182  Sum_probs=99.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||.|.++..|.+. .+....|+|++++.+..+.++    |   +.++++|+.+-+.. |  ++++||.|++
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL~~-f--~d~sFD~VIl   81 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGLAD-F--PDQSFDYVIL   81 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhHhh-C--CCCCccEEeh
Confidence            4799999999999999888875 589999999999998777553    3   56899999987653 3  6999999987


Q ss_pred             eCCCCCCCCcchhhhhhH-HHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecc-ccccccCCCCCCC
Q 014711          310 QCPNPDFNRPEHRWRMVQ-RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD-ECDTKTNQGGWLG  387 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~-~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D-~~~~~~~~~~~~~  387 (420)
                      +-  -.-       .+.+ ..+|+++   |+-|...++...+-.|...-.+.+ -.|-..+  ++. +|       .|..
T Consensus        82 sq--tLQ-------~~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~-~~GrmPv--t~~lPy-------~WYd  139 (193)
T PF07021_consen   82 SQ--TLQ-------AVRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLL-LRGRMPV--TKALPY-------EWYD  139 (193)
T ss_pred             Hh--HHH-------hHhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHH-hcCCCCC--CCCCCC-------cccC
Confidence            61  110       0111 2455555   455777777666655555444433 2232221  111 12       1332


Q ss_pred             CCC--CCCCCHHHHHHHHCCCCeEEEEEE
Q 014711          388 ENS--FGVRSDWEQHVIDRGAPMYRLMLS  414 (420)
Q Consensus       388 ~~~--~~~~T~~E~~~~~~G~~i~~~~~~  414 (420)
                      .+.  .-....||....+.|..|-+-.+-
T Consensus       140 TPNih~~Ti~DFe~lc~~~~i~I~~~~~~  168 (193)
T PF07021_consen  140 TPNIHLCTIKDFEDLCRELGIRIEERVFL  168 (193)
T ss_pred             CCCcccccHHHHHHHHHHCCCEEEEEEEE
Confidence            222  234467899999999999775553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.92  E-value=1.1e-08  Score=96.72  Aligned_cols=105  Identities=23%  Similarity=0.289  Sum_probs=81.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||||||+|.++..+++.  ..+++|+|+++.++..|++++...+. ++.+...|+......    .++.||.|++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~fD~Ii~  120 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE----HPGQFDVVTC  120 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh----cCCCccEEEE
Confidence            3578999999999999999886  56899999999999999998876665 688888988776311    3568999977


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ...-.+..  .+      ..+++.+.+.|+|||.+++.+-
T Consensus       121 ~~~l~~~~--~~------~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        121 MEMLEHVP--DP------ASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hhHhhccC--CH------HHHHHHHHHHcCCCcEEEEEec
Confidence            53212111  11      3789999999999999998753

>PLN02823 spermine synthase

Probab=98.92  E-value=2.6e-08  Score=99.25  Aligned_cols=129  Identities=16%  Similarity=0.201  Sum_probs=98.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh----CCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~----~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      +...||.||+|.|..+..+.+..+..+++.+|+++++++.|++.....    .-++++++.+|+..++..    .+++||
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----~~~~yD  178 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----RDEKFD  178 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----CCCCcc
Confidence            457899999999999999988767789999999999999999987532    135799999999998642    367899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHH-HHHhhccCCeEEEEEeCc------HHHHHHHHHHHHHc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEY  364 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~-~i~~~LkpgG~l~~~td~------~~~~~~~~~~l~~~  364 (420)
                      .|++..+||+...  +..++...+|++ .+.+.|+|||.++++.-.      ......+.+.+.+.
T Consensus       179 vIi~D~~dp~~~~--~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v  242 (336)
T PLN02823        179 VIIGDLADPVEGG--PCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV  242 (336)
T ss_pred             EEEecCCCccccC--cchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh
Confidence            9999888876221  123467789998 899999999999887422      33344455555553

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.91  E-value=2.6e-08  Score=91.54  Aligned_cols=109  Identities=14%  Similarity=0.116  Sum_probs=80.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCC-eEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPG-KLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~-~~d~i  307 (420)
                      .+.++||++||+|.++++++.+.. ..++++|+++.+++.+++|++..++. +++++++|+...+....  ... .+|.|
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~--~~~~~~dvv  125 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA--KKPTFDNVI  125 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh--ccCCCceEE
Confidence            367899999999999999999854 48999999999999999999998886 69999999977654322  122 35555


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHH--hhccCCeEEEEEeCc
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI  350 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~--~~LkpgG~l~~~td~  350 (420)
                      +.   ||.+....      ....+..+.  .+|+++|.+++++..
T Consensus       126 ~~---DPPy~~~~------~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       126 YL---DPPFFNGA------LQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             EE---CcCCCCCc------HHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            44   55433211      124444443  479999999998753

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.89  E-value=1.7e-08  Score=90.96  Aligned_cols=100  Identities=15%  Similarity=0.160  Sum_probs=74.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..+||||||+|.++..++++  ..+++++|+++.+++.+++++..  .+|++++++|+.++.   +  ++..+|.|+.
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~---~--~~~~~d~vi~   83 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFD---L--PKLQPYKVVG   83 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCC---c--cccCCCEEEE
Confidence            3568999999999999999988  57899999999999999998753  468999999998762   1  3446898887


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhh--ccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDL--LVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~--LkpgG~l~~~td  349 (420)
                      +  .|+..         ..+++..+.+.  +.++|.|+++.+
T Consensus        84 n--~Py~~---------~~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       84 N--LPYNI---------STPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             C--CCccc---------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence            6  33311         12333333332  458899988753

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.88  E-value=3.9e-08  Score=99.05  Aligned_cols=123  Identities=15%  Similarity=0.161  Sum_probs=90.5

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc---c---C-----
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA---S---Y-----  300 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~---~---~-----  300 (420)
                      ..+||++||+|.+++.|++..  ..++|+|+++++++.|++|+..++++|++|+++|+.+++.....   .   .     
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            469999999999999999885  48999999999999999999999999999999999987643210   0   0     


Q ss_pred             CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ...+|.|++   ||- ...      +.+.+++.+.+   |++.+|+++|...++..+.... + +|....+
T Consensus       277 ~~~~d~v~l---DPP-R~G------~~~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~-~-~Y~l~~v  332 (353)
T TIGR02143       277 SYNCSTIFV---DPP-RAG------LDPDTCKLVQA---YERILYISCNPETLKANLEQLS-E-THRVERF  332 (353)
T ss_pred             cCCCCEEEE---CCC-CCC------CcHHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHh-c-CcEEEEE
Confidence            113688776   553 122      12356665544   8999999998878777766544 2 2554443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PHA03412 putative methyltransferase; Provisional

Probab=98.88  E-value=1.5e-08  Score=95.40  Aligned_cols=100  Identities=15%  Similarity=0.138  Sum_probs=76.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC---CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~---P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      +.+|||+|||+|.+++.++++.   +..+++|+|+++.+++.|+++.     .++.++++|+....      .+.+||.|
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~------~~~~FDlI  118 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTE------FDTLFDMA  118 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhccc------ccCCccEE
Confidence            5789999999999999999874   4679999999999999999774     35889999997541      25689999


Q ss_pred             EEeCCCCCCCCc--chhh----hhhHHHHHHHHHhhccCCeE
Q 014711          308 SIQCPNPDFNRP--EHRW----RMVQRSLVEAVSDLLVHDGK  343 (420)
Q Consensus       308 ~~~fpdp~~k~~--~~k~----Rl~~~~~l~~i~~~LkpgG~  343 (420)
                      +.|  .|+.+..  +...    -++...+++.+.+++++|+.
T Consensus       119 IsN--PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        119 ISN--PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             EEC--CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            998  5554322  1111    23456799999997777665

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.87  E-value=2.9e-08  Score=94.78  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc--CCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~--~~~~~d  305 (420)
                      ...+|||||+++|..++.+|+.. |+.+++.+|++++..+.|++++.+.|+. +++++.+|+.+.++.....  ..++||
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD  158 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD  158 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence            35789999999999999999885 5789999999999999999999999975 6999999999987654321  136899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      .||+   |.+ |.       .+..+++.+.+.|+|||.+++
T Consensus       159 ~iFi---Dad-K~-------~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        159 FIFV---DAD-KD-------NYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             EEEe---cCC-HH-------HhHHHHHHHHHhcCCCeEEEE
Confidence            9987   443 11       235888999999999999887

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.83  E-value=4.5e-08  Score=89.25  Aligned_cols=116  Identities=21%  Similarity=0.303  Sum_probs=85.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCe---------EEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhcc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLN---------FLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVAS  299 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~---------viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~  299 (420)
                      ++..+||--||+|.++++.|...++..         ++|.|+++++++.|++|+...++.+ +.+.+.|+.++ +  +  
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-~--~--  102 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-P--L--  102 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-G--G--
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-c--c--
Confidence            367899999999999999988877776         9999999999999999999999864 89999999987 2  2  


Q ss_pred             CCCeEeEEEEeCCCCCCCCcc--hhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          300 YPGKLILVSIQCPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       300 ~~~~~d~i~~~fpdp~~k~~~--~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      .++++|.|..+  .||=..-.  ...+-+++++++++.++|++ ..+++.+....+
T Consensus       103 ~~~~~d~Ivtn--PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~  155 (179)
T PF01170_consen  103 PDGSVDAIVTN--PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL  155 (179)
T ss_dssp             TTSBSCEEEEE----STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH
T ss_pred             ccCCCCEEEEC--cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH
Confidence            47799999998  56633211  12244568999999999999 555555555443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.83  E-value=2.2e-08  Score=93.18  Aligned_cols=124  Identities=15%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-----CC-------------------------
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----IT-------------------------  280 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-----l~-------------------------  280 (420)
                      ...+|||||-+|..++.+|+.+-...++|+||++..|+.|+++++..-     ..                         
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t  138 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT  138 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence            567999999999999999999988999999999999999999864210     11                         


Q ss_pred             -----cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHH
Q 014711          281 -----NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVM  354 (420)
Q Consensus       281 -----nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~  354 (420)
                           |+.|...+..---.+++......||.|.+.--.-|..-.|+..=+  .+|++.+++.|.|||+|+++- .|..|.
T Consensus       139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvEPQpWksY~  216 (288)
T KOG2899|consen  139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVEPQPWKSYK  216 (288)
T ss_pred             ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence                 222222221110001111134678888766545553222222212  389999999999999999984 567775


Q ss_pred             HH
Q 014711          355 LR  356 (420)
Q Consensus       355 ~~  356 (420)
                      ..
T Consensus       217 ka  218 (288)
T KOG2899|consen  217 KA  218 (288)
T ss_pred             HH
Confidence            53

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.81  E-value=5.6e-09  Score=97.20  Aligned_cols=105  Identities=11%  Similarity=0.211  Sum_probs=76.3

Q ss_pred             EEEEEcCCccHHHHHHHHhCCC--CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh-hhhhhccCCCeEeEEEE
Q 014711          233 LVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-FRSIVASYPGKLILVSI  309 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~--~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~-~~~~~~~~~~~~d~i~~  309 (420)
                      .|||||||.|+....+.+.+|+  ..++++|.|+.+++..+++..... +++.-.+.|+..- +...+  ..+++|.+++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~--~~~svD~it~  150 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPP--EEGSVDIITL  150 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCC--CcCccceEEE
Confidence            7999999999999999999887  999999999999999988764332 4444445555432 11112  4688998866


Q ss_pred             eCCC-CCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpd-p~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|-- ..+..++       ...+..++++|||||.++++
T Consensus       151 IFvLSAi~pek~-------~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  151 IFVLSAIHPEKM-------QSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             EEEEeccChHHH-------HHHHHHHHHHhCCCcEEEEe
Confidence            5521 1111111       37889999999999999996

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.79  E-value=3.2e-08  Score=91.55  Aligned_cols=99  Identities=22%  Similarity=0.326  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|+|+-||-|.|++.+|+..+...|+++|++|.+++..+++++.+++++ +..+++|+.++.      ....+|.|.
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------~~~~~drvi  174 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------PEGKFDRVI  174 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEEE
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------CccccCEEE
Confidence            4789999999999999999997778899999999999999999999999876 899999998874      267899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      ++.|.--            ..||..+.+++++||.+++
T Consensus       175 m~lp~~~------------~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  175 MNLPESS------------LEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             E--TSSG------------GGGHHHHHHHEEEEEEEEE
T ss_pred             ECChHHH------------HHHHHHHHHHhcCCcEEEC
Confidence            9854321            2799999999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.76  E-value=2e-07  Score=85.90  Aligned_cols=154  Identities=12%  Similarity=0.105  Sum_probs=93.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||||||+|.++..+++. ....++|+|+|+++++.+++       .++.++++|+.+.++. +  +++++|.|++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~-~--~~~sfD~Vi~   81 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEA-F--PDKSFDYVIL   81 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccc-c--CCCCcCEEEE
Confidence            3578999999999999998876 45688999999999988854       2578899998753211 2  4678999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCC-
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE-  388 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~-  388 (420)
                      +.+-.|..+  +      ..+++++.+.++   ..++...+..+.......+ ..+... ....-.|       .|... 
T Consensus        82 ~~~l~~~~d--~------~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~-~~~~~~-~~~~~~~-------~~~~~~  141 (194)
T TIGR02081        82 SQTLQATRN--P------EEILDEMLRVGR---HAIVSFPNFGYWRVRWSIL-TKGRMP-VTGELPY-------DWYNTP  141 (194)
T ss_pred             hhHhHcCcC--H------HHHHHHHHHhCC---eEEEEcCChhHHHHHHHHH-hCCccc-cCCCCCc-------cccCCC
Confidence            743222111  1      267777777655   4444444444433222222 222111 0100000       12211 


Q ss_pred             -CCCCCCCHHHHHHHHCCCCeEEEEEE
Q 014711          389 -NSFGVRSDWEQHVIDRGAPMYRLMLS  414 (420)
Q Consensus       389 -~~~~~~T~~E~~~~~~G~~i~~~~~~  414 (420)
                       ..+....++.+.+.+.|.++....+.
T Consensus       142 ~~~~~s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       142 NIHFCTIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             CcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence             12345567788999999999876654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.75  E-value=5.8e-08  Score=96.67  Aligned_cols=116  Identities=20%  Similarity=0.219  Sum_probs=79.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-------CC---CcEEEEEcChhhh-hhhhhc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-------GI---TNGYFIATNATST-FRSIVA  298 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-------~l---~nv~~~~~Da~~~-~~~~~~  298 (420)
                      .+..|||+|||.|.-+....+.. -..++|+|++...|+.|+++..+.       ..   -...|+.+|.... +...++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            46899999999999999988764 468999999999999999998321       11   2477888888643 123332


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      .....||.|.+.|.-.+.-....+-    +.+|+.+.+.|+|||+|+..|-+
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~a----r~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKA----RQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHH----HHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHH----HHHHHHHHHhcCCCCEEEEEecC
Confidence            1235999999987544322222221    47999999999999999998744

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.72  E-value=9.1e-08  Score=92.66  Aligned_cols=99  Identities=16%  Similarity=0.228  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..|+.+.| ..|+|+|-+.....+.+--.+-.|.++ +.++-.-++++     + ..+.||.|+
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L-----p-~~~~FDtVF  187 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL-----P-NLGAFDTVF  187 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc-----c-ccCCcCEEE
Confidence            578999999999999999999864 479999999887766443323334333 33332344433     2 256899997


Q ss_pred             EeC-----CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQC-----PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~f-----pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +..     .+|.             ..|.++.+.|+|||.++++|
T Consensus       188 ~MGVLYHrr~Pl-------------~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  188 SMGVLYHRRSPL-------------DHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             EeeehhccCCHH-------------HHHHHHHHhhCCCCEEEEEE
Confidence            642     3332             78999999999999999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.72  E-value=4.3e-08  Score=92.26  Aligned_cols=109  Identities=9%  Similarity=0.026  Sum_probs=76.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhH------------HhCCCcEEEEEcChhhhhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ------------LSGITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~------------~~~l~nv~~~~~Da~~~~~~~~  297 (420)
                      .+.+||..|||.|.-+..||.+  +..|+|+|+|+.+++.+.+...            ...-.+++++++|..++-..  
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~--  118 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI--  118 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--
Confidence            3579999999999999999998  7889999999999999866321            01124799999999887210  


Q ss_pred             ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...+.||.|+-...-.   .-++.   ++.++.+.+.++|+|||.+++.+
T Consensus       119 ~~~~~~fD~VyDra~~~---Alpp~---~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        119 ANNLPVFDIWYDRGAYI---ALPND---LRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             ccccCCcCeeeeehhHh---cCCHH---HHHHHHHHHHHHhCCCcEEEEEE
Confidence            00124688875321000   00011   23589999999999999988764

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.72  E-value=2.7e-07  Score=95.89  Aligned_cols=132  Identities=15%  Similarity=0.129  Sum_probs=97.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||.|.=+.++|... ....+++.|+++..++..++++++.|+.|+.+.+.|+..+ ...+   +..||.|.
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~~~---~~~fD~IL  188 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GAAL---PETFDAIL  188 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hhhc---hhhcCeEE
Confidence            46899999999999999999985 4569999999999999999999999999999999999876 2222   45799998


Q ss_pred             EeCCCC----CCCCcchhh----------hhhHHHHHHHHHhhccCCeEEEEEeCc--HHHHHHHHH-HHHHcC
Q 014711          309 IQCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQSDI--EEVMLRMKQ-QFLEYG  365 (420)
Q Consensus       309 ~~fpdp----~~k~~~~k~----------Rl~~~~~l~~i~~~LkpgG~l~~~td~--~~~~~~~~~-~l~~~g  365 (420)
                      +.-|=.    +.++...+.          .-+|.++|+.+.+.|||||+++-.|..  +.--+.+.+ .+++++
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~  262 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP  262 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence            763311    111111111          124589999999999999999888743  222334444 345554

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=2.5e-07  Score=87.65  Aligned_cols=131  Identities=16%  Similarity=0.157  Sum_probs=109.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||-|+|+|.+.-.+|+. -|..+++-.|+.+...+.|++..+++++. |+++.+-|+...   -|.-.+..+|.|
T Consensus       105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~---GF~~ks~~aDaV  181 (314)
T KOG2915|consen  105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS---GFLIKSLKADAV  181 (314)
T ss_pred             CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC---CccccccccceE
Confidence            4799999999999999999999 69999999999999999999999999975 899999999764   122136779999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCe-EEEEEeCcHHHHHHHHHHHHHcCCceeEeecccc
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEC  376 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG-~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~  376 (420)
                      ++..|.||             ..+..++..||.+| +|+--|..-.+.+...+.+.++||..++.-++.+
T Consensus       182 FLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~~  238 (314)
T KOG2915|consen  182 FLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEVLL  238 (314)
T ss_pred             EEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEeeh
Confidence            99999999             66777788999877 7766677777788889999999998766555533

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.71  E-value=1.3e-07  Score=96.13  Aligned_cols=104  Identities=17%  Similarity=0.218  Sum_probs=86.0

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  311 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f  311 (420)
                      .+|||++||+|.+++.+|+..+...|+++|+++.+++.+++|++.++++++.+.++|+..++..     ...||.|.+  
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~l--  131 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDI--  131 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEE--
Confidence            5899999999999999999877668999999999999999999999999999999999877421     356999987  


Q ss_pred             CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHH
Q 014711          312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEE  352 (420)
Q Consensus       312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~  352 (420)
                       ||. -.  +      ..++....+.+++||.+++. ||...
T Consensus       132 -DP~-Gs--~------~~~l~~al~~~~~~gilyvSAtD~~~  163 (382)
T PRK04338        132 -DPF-GS--P------APFLDSAIRSVKRGGLLCVTATDTAP  163 (382)
T ss_pred             -CCC-CC--c------HHHHHHHHHHhcCCCEEEEEecCchh
Confidence             453 11  1      27888878889999999996 45433

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.69  E-value=2e-07  Score=89.28  Aligned_cols=128  Identities=16%  Similarity=0.207  Sum_probs=97.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC----CCcEEEEEcChhhhhhhhhccCCC-e
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPG-K  303 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~----l~nv~~~~~Da~~~~~~~~~~~~~-~  303 (420)
                      ++...||=||-|.|..+..+.+..+-.+++.+|+++..++.|++......    -++++++.+|+..++..    ... .
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----~~~~~  150 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----TQEEK  150 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----SSST-
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----ccCCc
Confidence            35789999999999999999877667899999999999999999765432    25799999999998754    244 8


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC----cHHHHHHHHHHHHHc
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IEEVMLRMKQQFLEY  364 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td----~~~~~~~~~~~l~~~  364 (420)
                      +|.|++..+||......    +...+|++.+.+.|+|||.+++...    .+.....+.+.+++.
T Consensus       151 yDvIi~D~~dp~~~~~~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~  211 (246)
T PF01564_consen  151 YDVIIVDLTDPDGPAPN----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV  211 (246)
T ss_dssp             EEEEEEESSSTTSCGGG----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred             ccEEEEeCCCCCCCccc----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence            99999988887532222    7778999999999999999999753    234445555666654

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.66  E-value=5.8e-07  Score=82.17  Aligned_cols=118  Identities=26%  Similarity=0.335  Sum_probs=90.7

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  312 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp  312 (420)
                      .++|||+|.|.-++.||-.+|+.+|+.+|.+.+-+...+.-+.+.+++|+++++..+++.      ....+||.|+.---
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------EYRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT------TTTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc------ccCCCccEEEeehh
Confidence            799999999999999999999999999999999999999999999999999999999882      14778999988643


Q ss_pred             CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC--cHHHHHHHHHHHHHcCCce
Q 014711          313 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       313 dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td--~~~~~~~~~~~l~~~g~~~  368 (420)
                      .|.            ..+++.+...|++||.+++.-.  +.+-.++....+...+...
T Consensus       125 ~~l------------~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~  170 (184)
T PF02527_consen  125 APL------------DKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV  170 (184)
T ss_dssp             SSH------------HHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred             cCH------------HHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence            332            3788999999999999888653  2222333444555554443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.65  E-value=1.2e-06  Score=88.65  Aligned_cols=118  Identities=17%  Similarity=0.192  Sum_probs=91.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+||++-|=||.++++.|... ...++++|+|..+++.|++|++.+|+.  .+.|+++|+.+++...-. ....||.|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g~~fDlI  294 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RGEKFDLI  294 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cCCcccEE
Confidence            37889999999999999999872 339999999999999999999999974  489999999999765431 23589999


Q ss_pred             EEeCCCCCCCCcchhhhh--hHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          308 SIQCPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl--~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      ++. |+-.-+.+....+.  .+..++..+.++|+|||.+++.|..
T Consensus       295 ilD-PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         295 ILD-PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             EEC-CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            884 22222222211111  2368899999999999999998854

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.63  E-value=4.2e-08  Score=91.42  Aligned_cols=100  Identities=15%  Similarity=0.196  Sum_probs=66.6

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ...+|+|||+|..+..+|..+  .+|+|+|+|+.|++.|++.-...- ....++...+..+++     ..++|+|.|.+-
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-----g~e~SVDlI~~A  107 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-----GGEESVDLITAA  107 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-----CCCcceeeehhh
Confidence            389999999997777777774  479999999999998876422110 011223333333331     148899999764


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCe-EEEEE
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQ  347 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG-~l~~~  347 (420)
                      =.-.|+.         .++|.+.++|+||+.| .+.+-
T Consensus       108 qa~HWFd---------le~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen  108 QAVHWFD---------LERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             hhHHhhc---------hHHHHHHHHHHcCCCCCEEEEE
Confidence            2233322         2589999999999877 55543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=6.6e-07  Score=92.08  Aligned_cols=123  Identities=20%  Similarity=0.218  Sum_probs=94.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+++|+=||.|.|++.||++  ..+|+|+|+++++++.|++|++.+++.|++|..+|+.++...+-  ....+|.|++ 
T Consensus       294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~Vvv-  368 (432)
T COG2265         294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVVV-  368 (432)
T ss_pred             CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEEE-
Confidence            578999999999999999976  67899999999999999999999999999999999999864332  2346799977 


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                        ||--+-       ..+++++.+. .++|-..+|+.++-..+...+ ..|.+.++...
T Consensus       369 --DPPR~G-------~~~~~lk~l~-~~~p~~IvYVSCNP~TlaRDl-~~L~~~gy~i~  416 (432)
T COG2265         369 --DPPRAG-------ADREVLKQLA-KLKPKRIVYVSCNPATLARDL-AILASTGYEIE  416 (432)
T ss_pred             --CCCCCC-------CCHHHHHHHH-hcCCCcEEEEeCCHHHHHHHH-HHHHhCCeEEE
Confidence              553222       1236666665 468888999987666655544 45666666443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.58  E-value=7.5e-07  Score=86.63  Aligned_cols=119  Identities=16%  Similarity=0.171  Sum_probs=98.7

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC----CCcEEEEEcChhhhhhhhhccCCCe
Q 014711          228 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       228 ~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~----l~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      +++..+||-||-|.|..+..+.+..+-.+++.+||++..++.|++......    -+++.++..|+.+++.+.    +..
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~----~~~  149 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC----EEK  149 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC----CCc
Confidence            334469999999999999999999888999999999999999999875543    367999999999987542    448


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHH
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM  354 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~  354 (420)
                      ||.|++...||-    .+...|++.+|.+.+.+.|+++|.+..++..+.+.
T Consensus       150 fDvIi~D~tdp~----gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~  196 (282)
T COG0421         150 FDVIIVDSTDPV----GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ  196 (282)
T ss_pred             CCEEEEcCCCCC----CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence            999999877772    24446788999999999999999999997654443

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=2.2e-07  Score=95.02  Aligned_cols=121  Identities=21%  Similarity=0.305  Sum_probs=88.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..++|+.||||.+.+++|+.  -..|+|||++++++.-|++|+..+|++|++|+++-++++++..+...-.+=+.+.+
T Consensus       383 ~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~i  460 (534)
T KOG2187|consen  383 ADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAI  460 (534)
T ss_pred             CCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEE
Confidence            4689999999999999999987  57899999999999999999999999999999999988876554311122344444


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHH
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF  361 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l  361 (420)
                      .  ||--+.-|.       .++..+.+.-.+-=.+++....+..+..+.+.+
T Consensus       461 i--DPpR~Glh~-------~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc  503 (534)
T KOG2187|consen  461 I--DPPRKGLHM-------KVIKALRAYKNPRRLVYVSCNPHTAARNVIDLC  503 (534)
T ss_pred             E--CCCcccccH-------HHHHHHHhccCccceEEEEcCHHHhhhhHHHhh
Confidence            4  664344343       677777776667767777654433333444443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.58  E-value=5.5e-07  Score=82.38  Aligned_cols=112  Identities=18%  Similarity=0.236  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.++||+-||||.++++.+.+. ...++.+|.++.++...++|++..+..+ +++++.|+...+..... ....||.|+
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-~~~~fDiIf  119 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-KGEKFDIIF  119 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH-CTS-EEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc-cCCCceEEE
Confidence            47899999999999999977763 4689999999999999999999999876 99999999887654321 367899997


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHH--hhccCCeEEEEEeCcH
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDIE  351 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~--~~LkpgG~l~~~td~~  351 (420)
                      +.  .|+ ....     ....+++.+.  .+|+++|.++++++..
T Consensus       120 lD--PPY-~~~~-----~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  120 LD--PPY-AKGL-----YYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             E----ST-TSCH-----HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             EC--CCc-ccch-----HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            74  333 2221     1246777776  8999999999998543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.57  E-value=3.7e-07  Score=88.35  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-CC-----CcEEEEEcChhhh-hhhhhccCCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GI-----TNGYFIATNATST-FRSIVASYPG  302 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-~l-----~nv~~~~~Da~~~-~~~~~~~~~~  302 (420)
                      ....++|+|||.|.-++..-+.- =..++|+||++-.|+.|+++...- +.     -.+.|+++|...- +.+.+++.+.
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             cccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            35678999999999999887663 347999999999999999987542 11     1378999998754 2334443455


Q ss_pred             eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      +||.|.+.|.-.+.-....+.    +.+|+.+.++|+|||+|+-.+.+.+.
T Consensus       196 ~fDivScQF~~HYaFetee~a----r~~l~Nva~~LkpGG~FIgTiPdsd~  242 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESA----RIALRNVAKCLKPGGVFIGTIPDSDV  242 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHH----HHHHHHHHhhcCCCcEEEEecCcHHH
Confidence            599998776544322222222    25789999999999999887655443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.57  E-value=1.7e-07  Score=83.81  Aligned_cols=77  Identities=10%  Similarity=0.074  Sum_probs=59.6

Q ss_pred             EEEeCChHHHHHHHHHhHHhC---CCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHH
Q 014711          258 LGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV  334 (420)
Q Consensus       258 iGiDis~~~i~~A~~~~~~~~---l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i  334 (420)
                      +|+|+|++|++.|+++....+   ..|++|+++|+.++     +.++++||.|++.+.-.+..++        .++++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~v~~~~~l~~~~d~--------~~~l~ei   67 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-----PFDDCEFDAVTMGYGLRNVVDR--------LRAMKEM   67 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-----CCCCCCeeEEEecchhhcCCCH--------HHHHHHH
Confidence            489999999999988765322   35799999999886     2357799999887644332211        3799999


Q ss_pred             HhhccCCeEEEEE
Q 014711          335 SDLLVHDGKVFLQ  347 (420)
Q Consensus       335 ~~~LkpgG~l~~~  347 (420)
                      +++|||||.|++.
T Consensus        68 ~rvLkpGG~l~i~   80 (160)
T PLN02232         68 YRVLKPGSRVSIL   80 (160)
T ss_pred             HHHcCcCeEEEEE
Confidence            9999999999874

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.55  E-value=4.4e-08  Score=92.02  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=75.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH------------hCCCcEEEEEcChhhhhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~------------~~l~nv~~~~~Da~~~~~~~~  297 (420)
                      .+.+||..|||.|.-+..||++  +.+|+|+|+|+.+++.+.+....            ....+++++++|..++.+.  
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~--  112 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE--  112 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS--
T ss_pred             CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh--
Confidence            4568999999999999999998  68999999999999998554221            1234689999999987321  


Q ss_pred             ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                        ..+.||.|+=.-.-.   .-++.   .++++.+.+.++|+|||.+++.|
T Consensus       113 --~~g~fD~iyDr~~l~---Alpp~---~R~~Ya~~l~~ll~p~g~~lLi~  155 (218)
T PF05724_consen  113 --DVGKFDLIYDRTFLC---ALPPE---MRERYAQQLASLLKPGGRGLLIT  155 (218)
T ss_dssp             --CHHSEEEEEECSSTT---TS-GG---GHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             --hcCCceEEEEecccc---cCCHH---HHHHHHHHHHHHhCCCCcEEEEE
Confidence              124799997331000   00122   23589999999999999955543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.55  E-value=1.1e-06  Score=84.38  Aligned_cols=123  Identities=16%  Similarity=0.173  Sum_probs=95.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC--CeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~--~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~  306 (420)
                      ...+||||.||.|...+.....+|.  ..+.-.|.|+..++..++.+++.|++++ +|.++||.+.. .+-. .+...+.
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~-l~p~P~l  212 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAA-LDPAPTL  212 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhhc-cCCCCCE
Confidence            4578999999999999999999997  7999999999999999999999999996 99999998862 2211 1222344


Q ss_pred             EE-----EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHHHHc
Q 014711          307 VS-----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEY  364 (420)
Q Consensus       307 i~-----~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l~~~  364 (420)
                      ++     =+|||-         .++ .+.+..++++|.|||+++... .|+++.+.+...|.+|
T Consensus       213 ~iVsGL~ElF~Dn---------~lv-~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH  266 (311)
T PF12147_consen  213 AIVSGLYELFPDN---------DLV-RRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH  266 (311)
T ss_pred             EEEecchhhCCcH---------HHH-HHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc
Confidence            33     345553         123 367889999999999997742 4788888888888776

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.55  E-value=9.4e-07  Score=86.07  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||+-|=+|.|++..+.. ....++.+|.|..+++.|++|+..++++  +++|++.|+.+++...-  ..+.||.|
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~--~~~~fD~I  199 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK--KGGRFDLI  199 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH--HTT-EEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh--cCCCCCEE
Confidence            4789999999999999987764 3457999999999999999999999864  79999999998865432  25689999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      ++. |..+-|.+....| -+.+++..+.++|+|||.+++.|..
T Consensus       200 IlD-PPsF~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  200 ILD-PPSFAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             EE---SSEESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             EEC-CCCCCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            885 3333222221112 2357899999999999999988754

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.52  E-value=4.2e-07  Score=84.37  Aligned_cols=131  Identities=10%  Similarity=0.102  Sum_probs=100.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC--CcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l--~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||.|.|-|.+++..+++- ..+|+-+|.++..++.|.-|--..++  .++.++.+|+.+..++ |  .+.+||.|
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~--~D~sfDaI  209 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-F--DDESFDAI  209 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-C--CccccceE
Confidence            47899999999999999988872 33999999999999998766443443  2589999999998654 3  58899998


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH-------HHHHHHHHHHHcCCcee
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-------VMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~-------~~~~~~~~l~~~g~~~~  369 (420)
                      .-   ||-  ...+.-+|.+.+|-++++|+|||||.++-.+.++.       ....+.+.|++.||..+
T Consensus       210 iH---DPP--RfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v  273 (287)
T COG2521         210 IH---DPP--RFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV  273 (287)
T ss_pred             ee---CCC--ccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence            44   442  11122367889999999999999999988775433       45568888889888743

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.52  E-value=6.1e-07  Score=85.37  Aligned_cols=96  Identities=15%  Similarity=0.254  Sum_probs=73.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ....+||||+|+|.++..+++++|+.+++..|. |..++.+++      ..+++++.+|..+-    +   +. .|.+++
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~----~---P~-~D~~~l  164 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP----L---PV-ADVYLL  164 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC----C---SS-ESEEEE
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhh----h---cc-ccceee
Confidence            357899999999999999999999999999998 888888877      56899999999732    2   33 898876


Q ss_pred             eC-CCCCCCCcchhhhhhHHHHHHHHHhhccCC--eEEEEE
Q 014711          310 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHD--GKVFLQ  347 (420)
Q Consensus       310 ~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg--G~l~~~  347 (420)
                      .. -.-|+.   .    ....+|+.+++.|+||  |+|++.
T Consensus       165 ~~vLh~~~d---~----~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  165 RHVLHDWSD---E----DCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             ESSGGGS-H---H----HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             ehhhhhcch---H----HHHHHHHHHHHHhCCCCCCeEEEE
Confidence            52 122211   1    1247999999999999  999885

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.52  E-value=1e-06  Score=85.70  Aligned_cols=71  Identities=15%  Similarity=0.163  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.++..++++.+  +++|+|+++.+++.++++...   .|+.++++|+.++.   +  ++...+.|+.
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~---~--~~~~~~~vv~  111 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVD---L--SELQPLKVVA  111 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCC---H--HHcCcceEEE
Confidence            457899999999999999999964  899999999999999887642   68999999998762   1  1111477777


Q ss_pred             e
Q 014711          310 Q  310 (420)
Q Consensus       310 ~  310 (420)
                      |
T Consensus       112 N  112 (272)
T PRK00274        112 N  112 (272)
T ss_pred             e
Confidence            7

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.51  E-value=4.2e-07  Score=89.20  Aligned_cols=74  Identities=18%  Similarity=0.226  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||||||+|.++..+++.  ..+++|+|+++.+++.+++++...+ ..|++++++|+....       ...+|.|+
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-------~~~~d~Vv  106 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-------FPYFDVCV  106 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-------ccccCEEE
Confidence            4678999999999999999987  4579999999999999999987766 568999999998751       23578888


Q ss_pred             EeCC
Q 014711          309 IQCP  312 (420)
Q Consensus       309 ~~fp  312 (420)
                      .+.|
T Consensus       107 aNlP  110 (294)
T PTZ00338        107 ANVP  110 (294)
T ss_pred             ecCC
Confidence            8743

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.51  E-value=3.7e-07  Score=81.55  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=57.0

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQC  311 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f  311 (420)
                      .|+|+.||.|..++.+|+.+  .+|+++|+++..++.|+.|++-.|.. |+.|+++|..+++...-  ....+|.|++. 
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~--~~~~~D~vFlS-   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK--SNKIFDVVFLS-   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB--------SEEEE--
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc--ccccccEEEEC-
Confidence            68999999999999999995  57999999999999999999999964 89999999999854321  11227999776 


Q ss_pred             CCCC
Q 014711          312 PNPD  315 (420)
Q Consensus       312 pdp~  315 (420)
                       .||
T Consensus        77 -PPW   79 (163)
T PF09445_consen   77 -PPW   79 (163)
T ss_dssp             ---B
T ss_pred             -CCC
Confidence             777

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.50  E-value=1.3e-06  Score=88.50  Aligned_cols=106  Identities=16%  Similarity=0.255  Sum_probs=88.0

Q ss_pred             CEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          232 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ..+||..||+|..++.++++.+ -..|+++|+++.+++.+++|++.+++.|+.+.+.|+..++..    ....||.|++ 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----~~~~fDvIdl-  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----RNRKFHVIDI-  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----hCCCCCEEEe-
Confidence            5899999999999999999854 358999999999999999999999988999999999988642    1356998877 


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHHH
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV  353 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~~  353 (420)
                        ||. ...        ..|+..+.+.+++||.+++. ||...+
T Consensus       121 --DPf-Gs~--------~~fld~al~~~~~~glL~vTaTD~~~L  153 (374)
T TIGR00308       121 --DPF-GTP--------APFVDSAIQASAERGLLLVTATDTSAL  153 (374)
T ss_pred             --CCC-CCc--------HHHHHHHHHhcccCCEEEEEecccHHh
Confidence              663 211        27999999999999999986 665443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.49  E-value=4.6e-07  Score=87.36  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.++..++++  ..+++|+|+++.+++.+++++..  ..|+.++++|+.++.       -..+|.|+.
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~-------~~~~d~Vv~   97 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD-------LPEFNKVVS   97 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC-------chhceEEEE
Confidence            4678999999999999999998  45899999999999999988754  468999999998751       224788888


Q ss_pred             eC
Q 014711          310 QC  311 (420)
Q Consensus       310 ~f  311 (420)
                      |.
T Consensus        98 Nl   99 (258)
T PRK14896         98 NL   99 (258)
T ss_pred             cC
Confidence            73

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.48  E-value=1e-06  Score=87.03  Aligned_cols=126  Identities=17%  Similarity=0.235  Sum_probs=96.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..+||==||||.++++..-.  +++++|.|++..|++-|+.|++..++....++.. ||..+ +  +  ++.++|.|.
T Consensus       197 ~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-p--l--~~~~vdaIa  269 (347)
T COG1041         197 RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-P--L--RDNSVDAIA  269 (347)
T ss_pred             cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-C--C--CCCccceEE
Confidence            3679999999999999998877  8999999999999999999999999888877777 99887 2  3  466799997


Q ss_pred             EeCCCCCCCCc----chhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRP----EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~----~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ..  .|+=...    ..-.+| ..++|+.++++||+||++.|.++..     ....+...+|....
T Consensus       270 tD--PPYGrst~~~~~~l~~L-y~~~le~~~evLk~gG~~vf~~p~~-----~~~~~~~~~f~v~~  327 (347)
T COG1041         270 TD--PPYGRSTKIKGEGLDEL-YEEALESASEVLKPGGRIVFAAPRD-----PRHELEELGFKVLG  327 (347)
T ss_pred             ec--CCCCcccccccccHHHH-HHHHHHHHHHHhhcCcEEEEecCCc-----chhhHhhcCceEEE
Confidence            74  2321111    111123 4699999999999999999998732     23345566666543

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=3.3e-06  Score=85.09  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=90.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC--CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~--~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||++.+.|.=+.++|+..++  ..|+++|+|+..+...++++.+.|+.|+..++.|+..+.....  ....||.|
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~--~~~~fD~i  233 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP--GGEKFDRI  233 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc--ccCcCcEE
Confidence            4789999999999999999999654  5679999999999999999999999999999999987632211  12359999


Q ss_pred             EEeCC---------CCCCCCcchhh-----hhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          308 SIQCP---------NPDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       308 ~~~fp---------dp~~k~~~~k~-----Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      .+.-|         +|-.+......     .-+|.++|....+.|||||.++..|.
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC  289 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC  289 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            76522         22111111111     12568999999999999999999874

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.42  E-value=8.2e-07  Score=81.85  Aligned_cols=107  Identities=19%  Similarity=0.183  Sum_probs=80.6

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhh---ccCCCeEeEE
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIV---ASYPGKLILV  307 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~---~~~~~~~d~i  307 (420)
                      ..|||||||||.++..+|+++|...+.-.|..+......+..+...+++|+ .-+..|+..-...+.   +....++|.|
T Consensus        27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            369999999999999999999999999999999998888888888888884 345566655311110   0124579998


Q ss_pred             EEe---CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          308 SIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       308 ~~~---fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +..   .--||         -.-..+++.+.+.|++||.|++.
T Consensus       107 ~~~N~lHI~p~---------~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen  107 FCINMLHISPW---------SAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             eehhHHHhcCH---------HHHHHHHHHHHHhCCCCCEEEEe
Confidence            643   12344         12258999999999999999985

The function of this family is unknown.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.42  E-value=1.7e-06  Score=78.36  Aligned_cols=108  Identities=18%  Similarity=0.247  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC---CCcEEEEEcChhhhh-hhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTF-RSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~---l~nv~~~~~Da~~~~-~~~~~~~~~~~d  305 (420)
                      .+.+|||+|||+|..++.+|+..+...|+..|.++ .+...+.|++.++   ..++.+...|..+-. .+.+  .+..||
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~D  121 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSFD  121 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSBS
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccCC
Confidence            46899999999999999999987788999999999 9999999998776   346888887765422 2223  356899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .|+..  |-.....      ..+.+++.+.+.|+|+|.+++..
T Consensus       122 ~Ilas--Dv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  122 VILAS--DVLYDEE------LFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             EEEEE--S--S-GG------GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             EEEEe--cccchHH------HHHHHHHHHHHHhCCCCEEEEEe
Confidence            99765  5543322      23689999999999999977764

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.40  E-value=2.5e-06  Score=86.01  Aligned_cols=122  Identities=22%  Similarity=0.284  Sum_probs=78.6

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhh-----h------ccC
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSI-----V------ASY  300 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~-----~------~~~  300 (420)
                      ..+||+-||.|.+++.||+..  ..|+|+|+++.+++.|++|+..+++.|++|+++++.++...+     +      ...
T Consensus       198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            379999999999999999984  689999999999999999999999999999999987652211     0      001


Q ss_pred             CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ...+|.|.+   ||--+.-       .+.+++.+.   ++.=.+|+.+|...+...+.. |.+ +|....
T Consensus       276 ~~~~d~vil---DPPR~G~-------~~~~~~~~~---~~~~ivYvSCnP~tlaRDl~~-L~~-~y~~~~  330 (352)
T PF05958_consen  276 SFKFDAVIL---DPPRAGL-------DEKVIELIK---KLKRIVYVSCNPATLARDLKI-LKE-GYKLEK  330 (352)
T ss_dssp             CTTESEEEE------TT-S-------CHHHHHHHH---HSSEEEEEES-HHHHHHHHHH-HHC-CEEEEE
T ss_pred             hcCCCEEEE---cCCCCCc-------hHHHHHHHh---cCCeEEEEECCHHHHHHHHHH-Hhh-cCEEEE
Confidence            235788866   5632221       235555553   345678888777776666654 443 666543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.38  E-value=3.4e-06  Score=81.08  Aligned_cols=59  Identities=22%  Similarity=0.325  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~  292 (420)
                      ++..|||||||+|.++..|+++.+  .++++|+++.+++.+++++..  .+|+.++++|+...
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~   87 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV   87 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence            467899999999999999999975  599999999999999887643  46899999999876

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.29  E-value=1.6e-05  Score=72.35  Aligned_cols=111  Identities=14%  Similarity=0.231  Sum_probs=83.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.++||+=+|||..+++.+.+. ...++.+|.+..++...++|++..++ .+++++..|+..+++..-  ..++||.||
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~--~~~~FDlVf  119 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG--TREPFDLVF  119 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC--CCCcccEEE
Confidence            57999999999999999988874 56899999999999999999998885 479999999997654321  123599997


Q ss_pred             EeCCCCCCCCcchhhhhhH-HHHHH--HHHhhccCCeEEEEEeCcH
Q 014711          309 IQCPNPDFNRPEHRWRMVQ-RSLVE--AVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~-~~~l~--~i~~~LkpgG~l~~~td~~  351 (420)
                      +   ||-+.+.     +.. ..-+.  .-..+|+|+|.++++++..
T Consensus       120 l---DPPy~~~-----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         120 L---DPPYAKG-----LLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             e---CCCCccc-----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            7   5543322     111 01112  2457899999999998754

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.28  E-value=1.3e-05  Score=78.38  Aligned_cols=117  Identities=18%  Similarity=0.259  Sum_probs=91.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||++++.|.=+.++|+..+ ...+++.|+++..+...++++++.|..|+...+.|+....+...   ...||.|.
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~Vl  161 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDRVL  161 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEEEE
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccchhh
Confidence            467899999999999999999965 77999999999999999999999999999999999988743332   44699998


Q ss_pred             EeCCCCC----CCCcchhhh----------hhHHHHHHHHHhhc----cCCeEEEEEeC
Q 014711          309 IQCPNPD----FNRPEHRWR----------MVQRSLVEAVSDLL----VHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp~----~k~~~~k~R----------l~~~~~l~~i~~~L----kpgG~l~~~td  349 (420)
                      +.-|=..    -++.+.+.+          -+|.++|+.+.+.+    ||||+++..|-
T Consensus       162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence            8633111    111111111          14689999999999    99999999884

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.28  E-value=7.5e-06  Score=72.48  Aligned_cols=128  Identities=17%  Similarity=0.175  Sum_probs=91.2

Q ss_pred             ccCCCccccccCCccccccccccCCCCCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcE
Q 014711          204 RMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNG  282 (420)
Q Consensus       204 ~~lPgv~aL~~~~p~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv  282 (420)
                      -.+|....+.+.+...++|.      .+--|||+|.|+|-++-++.++ .++..++.||.|++.+....+..     +.+
T Consensus        28 aI~PsSs~lA~~M~s~I~pe------sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~   96 (194)
T COG3963          28 AILPSSSILARKMASVIDPE------SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGV   96 (194)
T ss_pred             eecCCcHHHHHHHHhccCcc------cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCc
Confidence            45676655555544455663      3556999999999999998776 88899999999999998776653     456


Q ss_pred             EEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          283 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       283 ~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .++.+|+.++-...-......||.|++..|---   --.++|+   ++|+.+...|.+||.++--|
T Consensus        97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~---~P~~~~i---aile~~~~rl~~gg~lvqft  156 (194)
T COG3963          97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLN---FPMHRRI---AILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             cccccchhhHHHHHhhcCCCeeeeEEecccccc---CcHHHHH---HHHHHHHHhcCCCCeEEEEE
Confidence            799999998731111124678999976533211   1122333   88999999999999988655

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.27  E-value=1.6e-05  Score=74.10  Aligned_cols=106  Identities=17%  Similarity=0.246  Sum_probs=88.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc-CCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~-~~~~~d~  306 (420)
                      .+.++||||.=+|..++..|...| +..|+++|++++..+.+.+.....|.. .++++++++.+.+++.++. ..++||.
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf  152 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF  152 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence            368899999999999999999976 469999999999999999988888876 5999999999998877642 3578998


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      +|+   |.|      |++-  -.+.+++.+.||+||.+++
T Consensus       153 aFv---Dad------K~nY--~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  153 AFV---DAD------KDNY--SNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             EEE---ccc------hHHH--HHHHHHHHhhcccccEEEE
Confidence            877   555      2222  2788999999999999988

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.26  E-value=3.6e-07  Score=84.56  Aligned_cols=122  Identities=11%  Similarity=0.168  Sum_probs=82.5

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  311 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f  311 (420)
                      .++||+|||||..+..|-..  -.+.+|+|||+.|+++|.++-.   ..  ++.++|+..+++.   +.+..+|.|..--
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~---YD--~L~~Aea~~Fl~~---~~~er~DLi~AaD  196 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL---YD--TLYVAEAVLFLED---LTQERFDLIVAAD  196 (287)
T ss_pred             ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc---hH--HHHHHHHHHHhhh---ccCCcccchhhhh
Confidence            57999999999999887666  3468999999999999977521   11  3456666655431   1467789886541


Q ss_pred             CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC----cH--------HH---HHHHHHHHHHcCCceeEe
Q 014711          312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IE--------EV---MLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td----~~--------~~---~~~~~~~l~~~g~~~~~~  371 (420)
                      .-|+.-.      +  ..++..+...|+|||.|.|++.    +.        .|   -.++...++..|+..+.+
T Consensus       197 Vl~YlG~------L--e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~  263 (287)
T COG4976         197 VLPYLGA------L--EGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI  263 (287)
T ss_pred             HHHhhcc------h--hhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence            1121111      0  4788899999999999999752    11        11   124677777888776654

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.25  E-value=1.6e-05  Score=79.09  Aligned_cols=101  Identities=17%  Similarity=0.243  Sum_probs=86.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||.=+|-|-|++.+|+.-.-. |+++|++|.+++..++|+..+++.+ +..+++|+......     ...+|.|+
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-----~~~aDrIi  261 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-----LGVADRII  261 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc-----cccCCEEE
Confidence            48999999999999999999984333 9999999999999999999999988 99999999988421     26799999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++.|.--            ..|+..+.+.+++||.+++..
T Consensus       262 m~~p~~a------------~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         262 MGLPKSA------------HEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             eCCCCcc------------hhhHHHHHHHhhcCcEEEEEe
Confidence            9865421            279999999999999999875

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.25  E-value=1e-05  Score=75.54  Aligned_cols=121  Identities=22%  Similarity=0.183  Sum_probs=93.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCe-EeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGK-LILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~-~d~i~~  309 (420)
                      +.+++|||+|.|.-++.||-.+|+.+|+-+|...+.+...+.-..+.+++|++++++.++++-+      +.. +|.|++
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~------~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ------EKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc------ccccCcEEEe
Confidence            4789999999999999999999999999999999999999999999999999999999998731      223 899977


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE--eCcHHHHHHHHHHHHHcCCcee
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~--td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      ---.+.            ..+++-+...||+||.+...  .-..++..+........++...
T Consensus       142 RAva~L------------~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~  191 (215)
T COG0357         142 RAVASL------------NVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVE  191 (215)
T ss_pred             ehccch------------HHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEE
Confidence            422221            36778888999999987432  1234455556666666665543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.22  E-value=4.9e-06  Score=81.50  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..+||.+||.|.++..+++..| +..|+|+|.++.+++.|++++.+  ..++.++++|..++. ..++..-.++|.|+
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~-~~l~~~~~~vDgIl   95 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLK-EVLAEGLGKVDGIL   95 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHH-HHHHcCCCccCEEE
Confidence            356999999999999999999985 78999999999999999998765  568999999999883 33321012688886


Q ss_pred             Ee
Q 014711          309 IQ  310 (420)
Q Consensus       309 ~~  310 (420)
                      +.
T Consensus        96 ~D   97 (296)
T PRK00050         96 LD   97 (296)
T ss_pred             EC
Confidence            43

>PRK04148 hypothetical protein; Provisional

Probab=98.22  E-value=6.4e-06  Score=71.11  Aligned_cols=93  Identities=13%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCccH-HHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGL-FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~-~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.++||||||+|. ++..|++.  +..|+++|+++.+++.++++       .+.++++|..+-..++    -..+|.|+
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~----y~~a~liy   82 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEI----YKNAKLIY   82 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHH----HhcCCEEE
Confidence            45789999999996 78888876  68999999999998888665       2578899997642222    24589999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ..-|.|.          +++.+++ +++.+  |.-+++.+
T Consensus        83 sirpp~e----------l~~~~~~-la~~~--~~~~~i~~  109 (134)
T PRK04148         83 SIRPPRD----------LQPFILE-LAKKI--NVPLIIKP  109 (134)
T ss_pred             EeCCCHH----------HHHHHHH-HHHHc--CCCEEEEc
Confidence            9877663          3334443 44433  55566664

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=3.3e-06  Score=72.99  Aligned_cols=78  Identities=14%  Similarity=0.224  Sum_probs=62.6

Q ss_pred             cCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       226 f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      +++-++..++|+|||.|-..+..+ .+....++|+||.+++++.+++|+++..+ |+.++|+|..+..   +  ..+.||
T Consensus        44 ygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle---~--~~g~fD  116 (185)
T KOG3420|consen   44 YGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLE---L--KGGIFD  116 (185)
T ss_pred             hccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchh---c--cCCeEe
Confidence            343467899999999999985443 23456899999999999999999998887 4689999998763   2  357899


Q ss_pred             EEEEe
Q 014711          306 LVSIQ  310 (420)
Q Consensus       306 ~i~~~  310 (420)
                      ...++
T Consensus       117 taviN  121 (185)
T KOG3420|consen  117 TAVIN  121 (185)
T ss_pred             eEEec
Confidence            99887

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.20  E-value=1.7e-05  Score=78.53  Aligned_cols=115  Identities=10%  Similarity=0.113  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC----CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEE--EEcChhhhhhhhhccC--C
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR----KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF--IATNATSTFRSIVASY--P  301 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~----P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~--~~~Da~~~~~~~~~~~--~  301 (420)
                      ++..++|+|||+|.=+..|.+..    ....|+++|||.++++.+.+++.....+++.+  +++|..+.+ .+++.+  .
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l-~~l~~~~~~  154 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL-AWLKRPENR  154 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH-hhccccccc
Confidence            35689999999999877766553    35789999999999999999987556666655  888887763 233211  1


Q ss_pred             CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHh-hccCCeEEEEEeCc
Q 014711          302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSDI  350 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~-~LkpgG~l~~~td~  350 (420)
                      .....+++.  ---.-+..+.   -..+||+.+++ .|+|||.|++-.|-
T Consensus       155 ~~~r~~~fl--GSsiGNf~~~---ea~~fL~~~~~~~l~~~d~lLiG~D~  199 (319)
T TIGR03439       155 SRPTTILWL--GSSIGNFSRP---EAAAFLAGFLATALSPSDSFLIGLDG  199 (319)
T ss_pred             CCccEEEEe--CccccCCCHH---HHHHHHHHHHHhhCCCCCEEEEecCC
Confidence            222333322  1111111111   12389999999 99999999997764

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.18  E-value=2.5e-05  Score=74.23  Aligned_cols=121  Identities=15%  Similarity=0.134  Sum_probs=83.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ...+||||.|.|..+..|+..+.  +|++.|+|+.|..+.++    .|.   +.+  |..++ .+    .+..||.|.++
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----kg~---~vl--~~~~w-~~----~~~~fDvIscL  158 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----KGF---TVL--DIDDW-QQ----TDFKFDVISCL  158 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----CCC---eEE--ehhhh-hc----cCCceEEEeeh
Confidence            46799999999999999999875  49999999999655443    444   222  33333 11    35689999765


Q ss_pred             -CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-----------C----------------cHHHHHHHHHHHH
Q 014711          311 -CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----------D----------------IEEVMLRMKQQFL  362 (420)
Q Consensus       311 -fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-----------d----------------~~~~~~~~~~~l~  362 (420)
                       --|-..+   |      ..+|+++++.|+|+|.++++.           .                ++++...+.++++
T Consensus       159 NvLDRc~~---P------~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~  229 (265)
T PF05219_consen  159 NVLDRCDR---P------LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFE  229 (265)
T ss_pred             hhhhccCC---H------HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHH
Confidence             2222100   1      279999999999999998852           1                2344555668888


Q ss_pred             HcCCceeEeecccc
Q 014711          363 EYGKGKLVLVQDEC  376 (420)
Q Consensus       363 ~~g~~~~~~~~D~~  376 (420)
                      ..||.....+.-+|
T Consensus       230 p~GF~v~~~tr~PY  243 (265)
T PF05219_consen  230 PAGFEVERWTRLPY  243 (265)
T ss_pred             hcCCEEEEEeccCc
Confidence            88888766555555

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.18  E-value=3.8e-05  Score=71.47  Aligned_cols=119  Identities=13%  Similarity=0.229  Sum_probs=87.0

Q ss_pred             EEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014711          234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCP  312 (420)
Q Consensus       234 vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp  312 (420)
                      |.||||-.|...+.|.++.....++++|+++..++.|++++.+.++.+ +.+..+|....++     +.+.+|.|.+-..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-----~~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-----PGEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-------GGG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-----CCCCCCEEEEecC
Confidence            689999999999999999888899999999999999999999999764 9999999877542     1233788876521


Q ss_pred             CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          313 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       313 dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                               .-.++ .++|+.....++..-.|+++....  ...+++.+.++||...
T Consensus        76 ---------GG~lI-~~ILe~~~~~~~~~~~lILqP~~~--~~~LR~~L~~~gf~I~  120 (205)
T PF04816_consen   76 ---------GGELI-IEILEAGPEKLSSAKRLILQPNTH--AYELRRWLYENGFEII  120 (205)
T ss_dssp             ----------HHHH-HHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTTEEEE
T ss_pred             ---------CHHHH-HHHHHhhHHHhccCCeEEEeCCCC--hHHHHHHHHHCCCEEE
Confidence                     11222 378888888887777899987543  3468999999999764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.16  E-value=8.4e-06  Score=80.26  Aligned_cols=99  Identities=15%  Similarity=0.204  Sum_probs=77.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +.+|||+|||+|.+.+--|+.. ..+|+|+|-|.-+ +.|++.+..+++++ ++++++.+.++.   +  |.+.+|.|..
T Consensus        61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~---L--P~eKVDiIvS  133 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE---L--PVEKVDIIVS  133 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe---c--CccceeEEee
Confidence            6899999999999999888886 6799999988766 99999999999988 999999998872   3  3578999865


Q ss_pred             eCCCCCCCCcchhhhhhH----HHHHHHHHhhccCCeEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQ----RSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~----~~~l~~i~~~LkpgG~l~  345 (420)
                      -+.--|         ++.    ...|-.--++|+|||.++
T Consensus       134 EWMGy~---------Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  134 EWMGYF---------LLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhhHH---------HHHhhhhhhhhhhhhhccCCCceEc
Confidence            432221         222    245555678999999864

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.15  E-value=1.1e-05  Score=76.38  Aligned_cols=146  Identities=14%  Similarity=0.052  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHH-HHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTH-CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~-A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..+||+|||+|.++..+++. +...++|+|+++.++.. .+++..     -+.+...|+.....+.+...-..+|..+
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~-----v~~~~~~ni~~~~~~~~~~d~~~~Dvsf  148 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDER-----VKVLERTNIRYVTPADIFPDFATFDVSF  148 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCC-----eeEeecCCcccCCHhHcCCCceeeeEEE
Confidence            4678999999999999999987 45789999999988865 222211     0112233333221111110113678776


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE  388 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~  388 (420)
                      +..                ...+..+.+.|+| |.+++-.  .+++|--.+.....|.    +.+..    .|       
T Consensus       149 iS~----------------~~~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~gi----v~~~~----~~-------  194 (228)
T TIGR00478       149 ISL----------------ISILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGV----VRDKE----AI-------  194 (228)
T ss_pred             eeh----------------HhHHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCe----ecCHH----HH-------
Confidence            651                1367888999999 7776543  4555544433333331    11110    11       


Q ss_pred             CCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          389 NSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       389 ~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                        .....++.....+.|..+..+....+.
T Consensus       195 --~~~~~~~~~~~~~~~~~~~~~~~s~i~  221 (228)
T TIGR00478       195 --ALALHKVIDKGESPDFQEKKIIFSLTK  221 (228)
T ss_pred             --HHHHHHHHHHHHcCCCeEeeEEECCCC
Confidence              123344555556667777666665554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.13  E-value=3.7e-05  Score=84.27  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC------------------------------------------CCCeEEEEeCChHHHH
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR------------------------------------------KDLNFLGLEVNGKLVT  268 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~------------------------------------------P~~~viGiDis~~~i~  268 (420)
                      +..++|-.||+|.++++.|...                                          +...++|+|+++.+++
T Consensus       191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~  270 (702)
T PRK11783        191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ  270 (702)
T ss_pred             CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence            5789999999999999987631                                          1236999999999999


Q ss_pred             HHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcc--hhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          269 HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       269 ~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~--~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      .|++|+..+|+.+ +.|.++|+.++..   +...+++|.|..|  .|+-..-.  ...+-++..+-+ ..+.+.+|+.++
T Consensus       271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~---~~~~~~~d~IvtN--PPYg~r~~~~~~l~~lY~~lg~-~lk~~~~g~~~~  344 (702)
T PRK11783        271 AARKNARRAGVAELITFEVKDVADLKN---PLPKGPTGLVISN--PPYGERLGEEPALIALYSQLGR-RLKQQFGGWNAA  344 (702)
T ss_pred             HHHHHHHHcCCCcceEEEeCChhhccc---ccccCCCCEEEEC--CCCcCccCchHHHHHHHHHHHH-HHHHhCCCCeEE
Confidence            9999999999875 8999999988621   1123579999887  56533221  111222333333 333344999999


Q ss_pred             EEeCcHHHHH
Q 014711          346 LQSDIEEVML  355 (420)
Q Consensus       346 ~~td~~~~~~  355 (420)
                      +.|.+..+..
T Consensus       345 llt~~~~l~~  354 (702)
T PRK11783        345 LFSSSPELLS  354 (702)
T ss_pred             EEeCCHHHHH
Confidence            8887766543

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.12  E-value=1.5e-05  Score=82.60  Aligned_cols=103  Identities=16%  Similarity=0.226  Sum_probs=72.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ..+|+|||||+|-+....++.    .-..+|+++|.++.++...++++.+++. .+|+++++|++++.      .+..+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~------lpekvD  260 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE------LPEKVD  260 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC------HSS-EE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC------CCCcee
Confidence            478999999999997655443    3457999999999999888887777887 46999999999872      255899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      .|+.-...-. -.  .   -+.++.|....+.|||||.++
T Consensus       261 IIVSElLGsf-g~--n---El~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  261 IIVSELLGSF-GD--N---ELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEE---BTT-BT--T---TSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEEeccCCc-cc--c---ccCHHHHHHHHhhcCCCCEEe
Confidence            9975422211 00  0   134688999999999998753

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.09  E-value=8.9e-06  Score=70.62  Aligned_cols=59  Identities=19%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhh
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS  291 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~  291 (420)
                      +++|||||.|.++..+++.+|..+++++|.++.+.+.+++++..++++|+++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            48999999999999999999999999999999999999999998888889998877754

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.09  E-value=1.6e-05  Score=84.34  Aligned_cols=85  Identities=18%  Similarity=0.221  Sum_probs=60.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCC--------CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCC
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRK--------DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPG  302 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P--------~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~  302 (420)
                      ..+|||.|||+|.+++.+++..+        +.+++|+|+++.++..|+.++...+.-...+.+.|.............+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            46899999999999999988764        2679999999999999999887665223455555543210000111135


Q ss_pred             eEeEEEEeCCCCCCC
Q 014711          303 KLILVSIQCPNPDFN  317 (420)
Q Consensus       303 ~~d~i~~~fpdp~~k  317 (420)
                      .||.|..|  .||-+
T Consensus       112 ~fD~IIgN--PPy~~  124 (524)
T TIGR02987       112 LFDIVITN--PPYGR  124 (524)
T ss_pred             cccEEEeC--CCccc
Confidence            79999998  77754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.5e-05  Score=73.17  Aligned_cols=100  Identities=17%  Similarity=0.232  Sum_probs=79.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhC----------CCcEEEEEcChhhhhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSG----------ITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~----------l~nv~~~~~Da~~~~~~~~  297 (420)
                      ++...||+|.|+|.++..+|..  -|..+.+|||.-++.++.+.+++.+.-          ..++.++.+|......   
T Consensus        82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~---  158 (237)
T KOG1661|consen   82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA---  158 (237)
T ss_pred             cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC---
Confidence            3678999999999999999966  455566999999999999999986542          3469999999988742   


Q ss_pred             ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                        ...++|.|++.-..+              +..+.+...|+|||.+++-.
T Consensus       159 --e~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  159 --EQAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             --ccCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEEee
Confidence              457899999974333              45566777899999998854

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.96  E-value=1.6e-05  Score=65.56  Aligned_cols=99  Identities=17%  Similarity=0.208  Sum_probs=43.9

Q ss_pred             EEEcCCccHHHHHHHHhCCCC---eEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          235 VDIGSGNGLFLLGMARKRKDL---NFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       235 LDIGcG~G~~~~~lA~~~P~~---~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      |||||..|.++..+++..+..   +++++|..+. .+.+++.+++.++ .+++++++|..+.++.+.   ..++|.+++-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iD   76 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFID   76 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEEC
Confidence            799999999999998875544   6999999996 3344444444454 369999999998865432   5789999986


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      -.       |... .+ ..-++.+.+.|+|||.+++
T Consensus        77 g~-------H~~~-~~-~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   77 GD-------HSYE-AV-LRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             S----------HH-HH-HHHHHHHGGGEEEEEEEEE
T ss_pred             CC-------CCHH-HH-HHHHHHHHHHcCCCeEEEE
Confidence            21       1111 11 2567889999999999987

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.95  E-value=3e-05  Score=72.00  Aligned_cols=105  Identities=16%  Similarity=0.135  Sum_probs=73.7

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ..+.||.|+|-|..+-.+...+ --.|-.+|..++.++.|++.+......-..+.+..+.++.+     .+..+|+|++.
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P-----~~~~YDlIW~Q  129 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP-----EEGKYDLIWIQ  129 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------TT-EEEEEEE
T ss_pred             cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC-----CCCcEeEEEeh
Confidence            5789999999999999875553 35799999999999999987655333447888888877632     35789999999


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +.-.+..+.    .+  -+||+++...|+|+|.+++.
T Consensus       130 W~lghLTD~----dl--v~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  130 WCLGHLTDE----DL--VAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             S-GGGS-HH----HH--HHHHHHHHHHEEEEEEEEEE
T ss_pred             HhhccCCHH----HH--HHHHHHHHHhCcCCcEEEEE
Confidence            654432111    12  37999999999999999996

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.92  E-value=2.9e-05  Score=76.68  Aligned_cols=130  Identities=19%  Similarity=0.218  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-------CCCCeEEEEeCChHHHHHHHHHhHHhCC--CcEEEEEcChhhhhhhhhccC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASY  300 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-------~P~~~viGiDis~~~i~~A~~~~~~~~l--~nv~~~~~Da~~~~~~~~~~~  300 (420)
                      .+.+|+|-+||+|.+++++.+.       .+..+++|+|+++.++..|+-++.-++.  .+..+.++|.....  ... .
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~--~~~-~  122 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND--KFI-K  122 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH--SCT-S
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc--ccc-c
Confidence            3568999999999999998874       4788999999999999999988766664  34568888876541  110 1


Q ss_pred             CCeEeEEEEeCCCCCCCC--cchh-------------hhhhHHHHHHHHHhhccCCeEEEEEeCcHH-----HHHHHHHH
Q 014711          301 PGKLILVSIQCPNPDFNR--PEHR-------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----VMLRMKQQ  360 (420)
Q Consensus       301 ~~~~d~i~~~fpdp~~k~--~~~k-------------~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~-----~~~~~~~~  360 (420)
                      ...+|.|..+  .||-..  .+..             ..-..-.|+..+.+.|++||++.+......     +...+++.
T Consensus       123 ~~~~D~ii~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~  200 (311)
T PF02384_consen  123 NQKFDVIIGN--PPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKY  200 (311)
T ss_dssp             T--EEEEEEE----CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHH
T ss_pred             ccccccccCC--CCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHH
Confidence            4689999998  455332  1110             011123689999999999999876653322     22345665


Q ss_pred             HHHc
Q 014711          361 FLEY  364 (420)
Q Consensus       361 l~~~  364 (420)
                      +.+.
T Consensus       201 ll~~  204 (311)
T PF02384_consen  201 LLEN  204 (311)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            5443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.91  E-value=0.00015  Score=71.65  Aligned_cols=131  Identities=15%  Similarity=0.201  Sum_probs=100.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHH-----hCC--CcEEEEEcChhhhhhhhhccCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQL-----SGI--TNGYFIATNATSTFRSIVASYP  301 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~-----~~l--~nv~~~~~Da~~~~~~~~~~~~  301 (420)
                      ....+|=+|-|.|.-+.++.+ +| -.+++-+|++|+|++.++++..-     ...  ++++++..|+.++++.    ..
T Consensus       289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----a~  363 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----AA  363 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----hc
Confidence            357899999999999988875 68 56999999999999999854321     112  4699999999998653    35


Q ss_pred             CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH----HHHHHHHHHHcCCce
Q 014711          302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV----MLRMKQQFLEYGKGK  368 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~----~~~~~~~l~~~g~~~  368 (420)
                      +.||.+++.+|||--   ..-.|+.+.+|-..+.+.|+++|.++++...+-+    +=.+...+++.|+..
T Consensus       364 ~~fD~vIVDl~DP~t---ps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~  431 (508)
T COG4262         364 DMFDVVIVDLPDPST---PSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRV  431 (508)
T ss_pred             ccccEEEEeCCCCCC---cchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCccee
Confidence            689999999999952   2234788899999999999999999998643221    223566778888643

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.90  E-value=4.5e-05  Score=69.24  Aligned_cols=107  Identities=17%  Similarity=0.188  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh-----hhhhhccCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~-----~~~~~~~~~~~  303 (420)
                      ++..+||+||++|.|+..++++. +...++|+|+.+.           ...+++.++++|..+.     +...++.....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence            45899999999999999999986 7799999999987           3346788888887653     12222111268


Q ss_pred             EeEEEEeCCCCCCCCc---c-hhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          304 LILVSIQCPNPDFNRP---E-HRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~---~-~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +|.|......+....+   + ...++.. ..+..+.+.|+|||.+++.+
T Consensus        92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~-~~l~~a~~~L~~gG~~v~K~  139 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDRNIDEFISIRLIL-SQLLLALELLKPGGTFVIKV  139 (181)
T ss_dssp             ESEEEE-------SSHHSSHHHHHHHHH-HHHHHHHHHHCTTEEEEEEE
T ss_pred             cceeccccccCCCCchhhHHHHHHHHHH-HHHHHHHhhhcCCCEEEEEe
Confidence            9999875422211111   1 1113333 44456778899999988875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.87  E-value=0.00018  Score=72.24  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=87.0

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCC--------------------------------C-------eEEEEeCChHHHHHHHH
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKD--------------------------------L-------NFLGLEVNGKLVTHCRD  272 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~--------------------------------~-------~viGiDis~~~i~~A~~  272 (420)
                      ..++|==||+|.++++.|...++                                .       .++|+|+++.+++.|+.
T Consensus       193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~  272 (381)
T COG0116         193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA  272 (381)
T ss_pred             CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence            56899999999999999988653                                1       27899999999999999


Q ss_pred             HhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchh--hhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          273 SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       273 ~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k--~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      |+++.|+.. +.|.++|+..+-+     +-.++|.|++|  .||=..-..+  -.-+++.|.+.+.+.++--+.++|.|+
T Consensus       273 NA~~AGv~d~I~f~~~d~~~l~~-----~~~~~gvvI~N--PPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~  345 (381)
T COG0116         273 NARAAGVGDLIEFKQADATDLKE-----PLEEYGVVISN--PPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS  345 (381)
T ss_pred             HHHhcCCCceEEEEEcchhhCCC-----CCCcCCEEEeC--CCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            999999875 9999999998721     11688999888  5552221111  222557888899999999899999875


Q ss_pred             c
Q 014711          350 I  350 (420)
Q Consensus       350 ~  350 (420)
                      -
T Consensus       346 e  346 (381)
T COG0116         346 E  346 (381)
T ss_pred             H
Confidence            3

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.80  E-value=0.00043  Score=57.88  Aligned_cols=103  Identities=18%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             EEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCC-CeEeEEEEeC
Q 014711          234 VVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQC  311 (420)
Q Consensus       234 vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~-~~~d~i~~~f  311 (420)
                      ++|+|||+|... .+++..+. ..++|+|+++.++..++.........++.+...|....   .++... ..+|.+ ...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG---VLPFEDSASFDLV-ISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC---CCCCCCCCceeEE-eee
Confidence            999999999987 44444444 48999999999999855554332221268888887652   012133 478888 443


Q ss_pred             CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ...+...        ....+..+.+.|+|+|.+.+...
T Consensus       127 ~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         127 LVLHLLP--------PAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             eehhcCC--------HHHHHHHHHHhcCCCcEEEEEec
Confidence            3222111        13788999999999999988754

>PRK00536 speE spermidine synthase; Provisional

Probab=97.80  E-value=0.00034  Score=67.44  Aligned_cols=114  Identities=8%  Similarity=-0.072  Sum_probs=82.5

Q ss_pred             CCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--CC--CcEEEEEcChhhhhhhhhccCCC
Q 014711          227 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPG  302 (420)
Q Consensus       227 ~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--~l--~nv~~~~~Da~~~~~~~~~~~~~  302 (420)
                      .+++..+||=||-|.|..+.++.+. |. +++-+||++.+++.+++.....  ++  ++++++..    + .+   ...+
T Consensus        69 ~h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~---~~~~  138 (262)
T PRK00536         69 TKKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LD---LDIK  138 (262)
T ss_pred             hCCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hh---ccCC
Confidence            3456789999999999999999976 54 9999999999999999854332  22  45777641    1 11   1246


Q ss_pred             eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH----HHHHHHHHHHH
Q 014711          303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----VMLRMKQQFLE  363 (420)
Q Consensus       303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~----~~~~~~~~l~~  363 (420)
                      +||.|++-..++             ++|.+.+.+.|+|||.+..++..+.    .+..+.+.+++
T Consensus       139 ~fDVIIvDs~~~-------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~  190 (262)
T PRK00536        139 KYDLIICLQEPD-------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD  190 (262)
T ss_pred             cCCEEEEcCCCC-------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence            899998852222             3899999999999999999875433    33445555555

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=9.1e-05  Score=70.97  Aligned_cols=72  Identities=15%  Similarity=0.132  Sum_probs=59.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCC-eEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPG-KLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~-~~d~i~~  309 (420)
                      +..|||||+|.|.+|..|+++  ...|+++|+++.++...+++..  ...|++++++|+....   +  +.. ..+.|+.
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d---~--~~l~~~~~vVa  101 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFD---F--PSLAQPYKVVA  101 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCc---c--hhhcCCCEEEE
Confidence            578999999999999999999  5679999999999999988765  4568999999998872   1  111 5677877


Q ss_pred             eC
Q 014711          310 QC  311 (420)
Q Consensus       310 ~f  311 (420)
                      |-
T Consensus       102 Nl  103 (259)
T COG0030         102 NL  103 (259)
T ss_pred             cC
Confidence            73

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.71  E-value=2.5e-05  Score=80.26  Aligned_cols=98  Identities=14%  Similarity=0.180  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEE---eCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGL---EVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGi---Dis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      -.++||||||+|.|+..|..+  +...+.+   |..+..++.|.+    .|+.-   +.+-+.   ..-+|+++++||.|
T Consensus       118 iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale----RGvpa---~~~~~~---s~rLPfp~~~fDmv  185 (506)
T PF03141_consen  118 IRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE----RGVPA---MIGVLG---SQRLPFPSNAFDMV  185 (506)
T ss_pred             eEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh----cCcch---hhhhhc---cccccCCccchhhh
Confidence            468999999999999999987  3433332   444555555544    34431   111100   11235579999999


Q ss_pred             EEe-CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          308 SIQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       308 ~~~-fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++. +-.||....        .-+|-++.|+|+|||+|++..
T Consensus       186 Hcsrc~i~W~~~~--------g~~l~evdRvLRpGGyfv~S~  219 (506)
T PF03141_consen  186 HCSRCLIPWHPND--------GFLLFEVDRVLRPGGYFVLSG  219 (506)
T ss_pred             hcccccccchhcc--------cceeehhhhhhccCceEEecC
Confidence            764 557884432        147889999999999999853

; GO: 0008168 methyltransferase activity

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.70  E-value=0.0028  Score=59.17  Aligned_cols=127  Identities=16%  Similarity=0.132  Sum_probs=89.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..||-+|..+|....+++.- -|+..|+++|.|+...+....-+++  .+|+--+..||..- ..+-. .-+.+|.|+
T Consensus        73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R~NIiPIl~DAr~P-~~Y~~-lv~~VDvI~  148 (229)
T PF01269_consen   73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--RPNIIPILEDARHP-EKYRM-LVEMVDVIF  148 (229)
T ss_dssp             TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--STTEEEEES-TTSG-GGGTT-TS--EEEEE
T ss_pred             CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--CCceeeeeccCCCh-HHhhc-ccccccEEE
Confidence            4789999999999999999998 5689999999999776655555443  35999999999864 22211 234899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---------CcHHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---------d~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ..-..|-      .    .+-++..+...||+||.+++..         +.+..+....+.|++.++...+
T Consensus       149 ~DVaQp~------Q----a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e  209 (229)
T PF01269_consen  149 QDVAQPD------Q----ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE  209 (229)
T ss_dssp             EE-SSTT------H----HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             ecCCChH------H----HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence            8755542      1    1235667778999999998753         3455566677788888887644

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.67  E-value=0.00015  Score=67.43  Aligned_cols=104  Identities=16%  Similarity=0.162  Sum_probs=61.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH-------hC--CCcEEEEEcChhhhh--hhhhc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-------SG--ITNGYFIATNATSTF--RSIVA  298 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~-------~~--l~nv~~~~~Da~~~~--~~~~~  298 (420)
                      ++.+.+|||||.|...+..|..++-...+|||+.+...+.|+...+.       .|  ...+.+.++|..+..  ...+ 
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~-  120 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW-  120 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG-
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh-
Confidence            46899999999999999999888767799999999999888764332       23  346889999986531  1112 


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                         ..-|.|++|  +-.+...      +. .-|.+....||+|-+++-
T Consensus       121 ---s~AdvVf~N--n~~F~~~------l~-~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  121 ---SDADVVFVN--NTCFDPD------LN-LALAELLLELKPGARIIS  156 (205)
T ss_dssp             ---HC-SEEEE----TTT-HH------HH-HHHHHHHTTS-TT-EEEE
T ss_pred             ---cCCCEEEEe--ccccCHH------HH-HHHHHHHhcCCCCCEEEE
Confidence               246788886  2111110      11 334566678888888753

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.65  E-value=0.00012  Score=64.05  Aligned_cols=63  Identities=29%  Similarity=0.421  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHhHHhC--C-CcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSG--I-TNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~~~~~--l-~nv~~~~~Da~~~  292 (420)
                      +...|+|+|||.|.++..|+..    .|+.+|+|+|.++..++.++++.++.+  . .++.+..++....
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   94 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE   94 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence            4678999999999999999981    278999999999999999999988877  4 5677777766543

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.64  E-value=7.4e-05  Score=69.04  Aligned_cols=62  Identities=15%  Similarity=0.217  Sum_probs=56.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhh
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFR  294 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~  294 (420)
                      .++|+|.=||.|..++..|.++|  .|++||+++.-|..|++|++-.|+++ ++|+|+|..+...
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~  157 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS  157 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHH
Confidence            68899999999999999999964  69999999999999999999999874 9999999998754

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.63  E-value=6e-05  Score=69.67  Aligned_cols=107  Identities=16%  Similarity=0.167  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCccHHHHHHH----Hh----CC-CCeEEEEeCChHHHHHHHHHh--------------HH-----hC----
Q 014711          231 QPLVVDIGSGNGLFLLGMA----RK----RK-DLNFLGLEVNGKLVTHCRDSL--------------QL-----SG----  278 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA----~~----~P-~~~viGiDis~~~i~~A~~~~--------------~~-----~~----  278 (420)
                      .-+|+-.||++|.=.-.||    +.    .+ +..++|.|+|+.+++.|++-.              .+     .+    
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            5689999999997543333    21    12 468999999999999998610              11     01    


Q ss_pred             -----CCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          279 -----ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       279 -----l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                           .++|+|.+.|+.+. .   + ..+.+|.|++-----++.      .-.+.++++.+++.|+|||+|++..
T Consensus       112 v~~~lr~~V~F~~~NL~~~-~---~-~~~~fD~I~CRNVlIYF~------~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDP-D---P-PFGRFDLIFCRNVLIYFD------PETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS-------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             EChHHcCceEEEecccCCC-C---c-ccCCccEEEecCEEEEeC------HHHHHHHHHHHHHHcCCCCEEEEec
Confidence                 14699999999872 1   1 467899997641111111      1133589999999999999999954

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.62  E-value=0.00026  Score=67.00  Aligned_cols=106  Identities=10%  Similarity=0.195  Sum_probs=71.3

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          228 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       228 ~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+.+|.|+|||-+.++.  ..   ..+|+.+|+-+.               |=+++.+|+.+.     |..++++|.+
T Consensus       178 r~~~~vIaD~GCGEakiA~--~~---~~kV~SfDL~a~---------------~~~V~~cDm~~v-----Pl~d~svDva  232 (325)
T KOG3045|consen  178 RPKNIVIADFGCGEAKIAS--SE---RHKVHSFDLVAV---------------NERVIACDMRNV-----PLEDESVDVA  232 (325)
T ss_pred             CcCceEEEecccchhhhhh--cc---ccceeeeeeecC---------------CCceeeccccCC-----cCccCcccEE
Confidence            3568899999999998876  11   246888876532               446778888875     4468999987


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---CcHHHHHHHHHHHHHcCCce
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---d~~~~~~~~~~~l~~~g~~~  368 (420)
                      .+..+  .+-.     . + ..|+.++.|+|+|||.+++.-   -..+. ....+.+...||..
T Consensus       233 V~CLS--LMgt-----n-~-~df~kEa~RiLk~gG~l~IAEv~SRf~dv-~~f~r~l~~lGF~~  286 (325)
T KOG3045|consen  233 VFCLS--LMGT-----N-L-ADFIKEANRILKPGGLLYIAEVKSRFSDV-KGFVRALTKLGFDV  286 (325)
T ss_pred             EeeHh--hhcc-----c-H-HHHHHHHHHHhccCceEEEEehhhhcccH-HHHHHHHHHcCCee
Confidence            54311  1000     0 0 389999999999999999962   11221 12556677888875

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.61  E-value=0.00014  Score=67.08  Aligned_cols=108  Identities=9%  Similarity=0.136  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..-+|.|+|||.+.++..+.+   ..+|.-.|+-..               |=.+..+|+.+.     |.+++++|.+.
T Consensus        71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---------------n~~Vtacdia~v-----PL~~~svDv~V  127 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---------------NPRVTACDIANV-----PLEDESVDVAV  127 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH--S------EEEEESS-S---------------STTEEES-TTS------S--TT-EEEEE
T ss_pred             CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---------------CCCEEEecCccC-----cCCCCceeEEE
Confidence            4567999999999998855432   357999997653               223567888765     34689999986


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---CcHHHHHHHHHHHHHcCCcee
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---d~~~~~~~~~~~l~~~g~~~~  369 (420)
                      +..+  .+-..       -..|++++.|+|||||.|.+.-   -..+ .+...+.++..||...
T Consensus       128 fcLS--LMGTn-------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~-~~~F~~~~~~~GF~~~  181 (219)
T PF05148_consen  128 FCLS--LMGTN-------WPDFIREANRVLKPGGILKIAEVKSRFEN-VKQFIKALKKLGFKLK  181 (219)
T ss_dssp             EES-----SS--------HHHHHHHHHHHEEEEEEEEEEEEGGG-S--HHHHHHHHHCTTEEEE
T ss_pred             EEhh--hhCCC-------cHHHHHHHHheeccCcEEEEEEecccCcC-HHHHHHHHHHCCCeEE
Confidence            5421  11110       1589999999999999999962   1111 2345667888898764

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.61  E-value=0.00029  Score=68.85  Aligned_cols=98  Identities=18%  Similarity=0.333  Sum_probs=70.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +.+|||+|||+|.+..-.|+. ...+|+++|-|+ |.+.|++.+..+.+. ++.++.+-++++.      .++.+|.++.
T Consensus       178 ~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie------LPEk~DviIS  249 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE------LPEKVDVIIS  249 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc------CchhccEEEe
Confidence            688999999999988777766 357899999775 788998887766654 5889999888772      3667888754


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHH---HHHhhccCCeEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVE---AVSDLLVHDGKVF  345 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~---~i~~~LkpgG~l~  345 (420)
                         .|.      .--+++++.|+   ..+++|||.|..+
T Consensus       250 ---EPM------G~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  250 ---EPM------GYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             ---ccc------hhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence               332      01134444444   3469999998754

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.56  E-value=0.00027  Score=69.09  Aligned_cols=85  Identities=13%  Similarity=0.224  Sum_probs=51.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-CCC-cEEEEEcChh-hhhhhhhccCCCeEeEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GIT-NGYFIATNAT-STFRSIVASYPGKLILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-~l~-nv~~~~~Da~-~~~~~~~~~~~~~~d~i  307 (420)
                      ..++||||||.-++--.|+.+..+++|+|.||++.+++.|++++.++ +++ +++++...-. .++..... ..+.||..
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEE
Confidence            56899999999998666655544899999999999999999999998 776 4877765332 23332221 34578888


Q ss_pred             EEeCCCCCCCC
Q 014711          308 SIQCPNPDFNR  318 (420)
Q Consensus       308 ~~~fpdp~~k~  318 (420)
                      .++  .|++..
T Consensus       182 mCN--PPFy~s  190 (299)
T PF05971_consen  182 MCN--PPFYSS  190 (299)
T ss_dssp             EE-------SS
T ss_pred             ecC--CccccC
Confidence            876  555443

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.53  E-value=0.00015  Score=70.91  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=70.9

Q ss_pred             CCEEEEEcCCccHHHHHHHH----hCC----CCeEEEEeCChHHHHHHHHHh------------------HH-----hC-
Q 014711          231 QPLVVDIGSGNGLFLLGMAR----KRK----DLNFLGLEVNGKLVTHCRDSL------------------QL-----SG-  278 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~----~~P----~~~viGiDis~~~i~~A~~~~------------------~~-----~~-  278 (420)
                      .-+|+-.||.||.=.-.||-    ..+    +..++|.|||+.+++.|++-.                  .+     .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            46899999999985444332    222    468999999999999998631                  00     01 


Q ss_pred             ------C-CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          279 ------I-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       279 ------l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                            + +.|+|.+.|+.+.  .+ + ..+.||.|++...-.++..      -.+.++++.+++.|+|||+|++-.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~--~~-~-~~~~fD~I~cRNvliyF~~------~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAK--QW-A-VPGPFDAIFCRNVMIYFDK------TTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCC--CC-c-cCCCcceeeHhhHHhcCCH------HHHHHHHHHHHHHhCCCcEEEEeC
Confidence                  1 3478888888652  11 1 2467999976311111111      123589999999999999998854

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.53  E-value=0.00032  Score=66.87  Aligned_cols=111  Identities=12%  Similarity=0.137  Sum_probs=76.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ....|||||.|+|..+..|.+.  ..+|+++|+++.|+....++.+....+ .++++++|....       ....+|.++
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-------d~P~fd~cV  128 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-------DLPRFDGCV  128 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-------CCcccceee
Confidence            4689999999999999999998  789999999999999998887544333 499999999876       224567666


Q ss_pred             EeCCCCCC-----CCc-c-----hhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          309 IQCPNPDF-----NRP-E-----HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       309 ~~fpdp~~-----k~~-~-----~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      .+-|-...     |-- |     ...-+++.+|...+  .=+||-.++...+..
T Consensus       129 sNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RL--va~pgd~~Ycrlsin  180 (315)
T KOG0820|consen  129 SNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRL--VARPGDSLYCRLSIN  180 (315)
T ss_pred             ccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhh--ccCCCCchhceeehh
Confidence            55332110     000 0     00113445665544  556888888776544

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.44  E-value=0.0023  Score=64.58  Aligned_cols=117  Identities=16%  Similarity=0.193  Sum_probs=90.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||.++-.|.=+.++|... -..-+++.|.+...+.....++++.|..|...+..|...+-...+   .++||.|.
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~---~~~fDRVL  317 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF---PGSFDRVL  317 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc---Ccccceee
Confidence            47899999999999999998873 456899999999999999999999999999999999987632334   33899997


Q ss_pred             EeCC---------CCCCCCcc-----hhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCP---------NPDFNRPE-----HRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fp---------dp~~k~~~-----~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +.-|         |+-.+...     .+.-.+|+++|..+...+++||+|+-.|-
T Consensus       318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC  372 (460)
T KOG1122|consen  318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC  372 (460)
T ss_pred             ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence            7532         11111111     00123568999999999999999998873

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.42  E-value=0.00051  Score=66.39  Aligned_cols=103  Identities=16%  Similarity=0.185  Sum_probs=71.4

Q ss_pred             CCEEEEEcCCccHH----HHHHHHhCC-----CCeEEEEeCChHHHHHHHHH------h---------HH----h--C--
Q 014711          231 QPLVVDIGSGNGLF----LLGMARKRK-----DLNFLGLEVNGKLVTHCRDS------L---------QL----S--G--  278 (420)
Q Consensus       231 ~~~vLDIGcG~G~~----~~~lA~~~P-----~~~viGiDis~~~i~~A~~~------~---------~~----~--~--  278 (420)
                      .-+|.-.||+||.=    ++.|.+..|     ...++|.|||..+++.|++=      .         .+    .  +  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            56899999999974    444455565     58999999999999999751      1         00    0  1  


Q ss_pred             ------CCcEEEEEcChhhhhhhhhccCCCeEeEEEEe----CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          279 ------ITNGYFIATNATSTFRSIVASYPGKLILVSIQ----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       279 ------l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~----fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                            .++|+|-+.|+..-.  +   ..+.||.|++-    |-|..          .+.++++..+..|+|||+|++-+
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~--~---~~~~fD~IfCRNVLIYFd~~----------~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDS--P---FLGKFDLIFCRNVLIYFDEE----------TQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEChHHhcccEEeecCCCCCc--c---ccCCCCEEEEcceEEeeCHH----------HHHHHHHHHHHHhCCCCEEEEcc
Confidence                  134777777776531  1   25678988542    22322          45689999999999999999953

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.0024  Score=59.08  Aligned_cols=103  Identities=16%  Similarity=0.126  Sum_probs=71.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-----hhhhccCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-----~~~~~~~~~~  303 (420)
                      ++.+|+|+|+-.|.++..+++. .+...++|+|+.|--           ...+|.++++|...-.     .+.+  ....
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l--~~~~  111 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEAL--GGAP  111 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHc--CCCC
Confidence            4789999999999999999988 455679999998742           3567999999997631     1222  2344


Q ss_pred             EeEEEEeCCCCCCCCc-----chhh-hhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          304 LILVSIQCPNPDFNRP-----EHRW-RMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~-----~~k~-Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +|.|..   |+.|...     +|.+ -.+-...+..+...|+|||.|.+..
T Consensus       112 ~DvV~s---D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~  159 (205)
T COG0293         112 VDVVLS---DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV  159 (205)
T ss_pred             cceEEe---cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence            688865   4443322     2221 1122456677888999999998764

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.40  E-value=8.5e-05  Score=71.31  Aligned_cols=98  Identities=15%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..++|+|||+|..+..    +|.+.++|.|++...+..|++.    +.  .....+|+..+     |..+.+||....
T Consensus        45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~----~~--~~~~~ad~l~~-----p~~~~s~d~~ls  109 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS----GG--DNVCRADALKL-----PFREESFDAALS  109 (293)
T ss_pred             CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC----CC--ceeehhhhhcC-----CCCCCccccchh
Confidence            478999999999998764    5999999999999998877552    21  15778888876     235677887643


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .-.-.     |...|.-+...++++.+.|+|||...+.
T Consensus       110 iavih-----hlsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  110 IAVIH-----HLSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             hhhhh-----hhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence            21111     1122333358999999999999987664

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00054  Score=63.26  Aligned_cols=105  Identities=13%  Similarity=0.085  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+||+||+|-|.....+-++.|..+++ ||-+++.+++.+...-. .-.||..+.+-.++.++.+   +++.||-|+.
T Consensus       101 kggrvLnVGFGMgIidT~iQe~~p~~H~I-iE~hp~V~krmr~~gw~-ek~nViil~g~WeDvl~~L---~d~~FDGI~y  175 (271)
T KOG1709|consen  101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWI-IEAHPDVLKRMRDWGWR-EKENVIILEGRWEDVLNTL---PDKHFDGIYY  175 (271)
T ss_pred             CCceEEEeccchHHHHHHHhhcCCcceEE-EecCHHHHHHHHhcccc-cccceEEEecchHhhhccc---cccCcceeEe
Confidence            58999999999999988887777776654 89999999888876542 2358999988887775433   5788999976


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .-=.|.     ..   --..|...+.++|||+|.|-+-
T Consensus       176 DTy~e~-----yE---dl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  176 DTYSEL-----YE---DLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             echhhH-----HH---HHHHHHHHHhhhcCCCceEEEe
Confidence            411111     00   0125677899999999999874

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.37  E-value=0.0022  Score=70.14  Aligned_cols=126  Identities=13%  Similarity=0.065  Sum_probs=84.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC-------C-----CCeEEEEeCCh---HHHHHHHH-----------HhHH-----hCC
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR-------K-----DLNFLGLEVNG---KLVTHCRD-----------SLQL-----SGI  279 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~-------P-----~~~viGiDis~---~~i~~A~~-----------~~~~-----~~l  279 (420)
                      .-+|+|+|+|+|...+...+.+       |     ..+|+++|..+   +.+..+.+           ..+.     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            4789999999999876665443       4     46999999754   33333321           1111     122


Q ss_pred             -------C--cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          280 -------T--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       280 -------~--nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                             .  +++++.+|+.+.++.+    ...+|.+|+.   +....+.+  .+-++++++.+++.++|||+|.-.|  
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~lD---~FsP~~np--~~W~~~~~~~l~~~~~~~~~~~t~t--  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFLD---GFAPAKNP--DMWSPNLFNALARLARPGATLATFT--  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEeC---CCCCccCh--hhccHHHHHHHHHHhCCCCEEEEee--
Confidence                   1  4678889999876432    3468998774   32111111  2345699999999999999998555  


Q ss_pred             HHHHHHHHHHHHHcCCcee
Q 014711          351 EEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       351 ~~~~~~~~~~l~~~g~~~~  369 (420)
                        -...++..|.+.||...
T Consensus       207 --~a~~vr~~l~~~GF~v~  223 (662)
T PRK01747        207 --SAGFVRRGLQEAGFTVR  223 (662)
T ss_pred             --hHHHHHHHHHHcCCeee
Confidence              35568889999998754

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.33  E-value=0.0028  Score=58.92  Aligned_cols=122  Identities=11%  Similarity=0.136  Sum_probs=95.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +..+.||||-.+.....|.+.+|...+++.|+++..++.|.++..+.++. .++..++|...-+.     .+..+|.+++
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-----~~d~~d~ivI   91 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-----LEDEIDVIVI   91 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-----ccCCcCEEEE
Confidence            34499999999999999999999999999999999999999999998875 57777787754421     3557899887


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      -..-.         +++ .++|++-.+.|+.=-+++++..+..  .++++.+.+++|...
T Consensus        92 AGMGG---------~lI-~~ILee~~~~l~~~~rlILQPn~~~--~~LR~~L~~~~~~I~  139 (226)
T COG2384          92 AGMGG---------TLI-REILEEGKEKLKGVERLILQPNIHT--YELREWLSANSYEIK  139 (226)
T ss_pred             eCCcH---------HHH-HHHHHHhhhhhcCcceEEECCCCCH--HHHHHHHHhCCceee
Confidence            63222         233 3788888888876668888875544  478899999998764

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.28  E-value=0.01  Score=54.47  Aligned_cols=127  Identities=17%  Similarity=0.130  Sum_probs=94.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..||=+|.-+|....+.+.-.++..++|+|.|+.........+++  .+|+--+..||..-. .+- .--+.+|+|+.
T Consensus        76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~-~Y~-~~Ve~VDviy~  151 (231)
T COG1889          76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPE-KYR-HLVEKVDVIYQ  151 (231)
T ss_pred             CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcH-Hhh-hhcccccEEEE
Confidence            57899999999999999999999989999999999988777766655  358999999998642 211 01346899988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---------CcHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---------d~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      .-..|-      +    ..=+...+...||+||++++..         |....+..-.+.+++.+|...+
T Consensus       152 DVAQp~------Q----a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e  211 (231)
T COG1889         152 DVAQPN------Q----AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE  211 (231)
T ss_pred             ecCCch------H----HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence            655542      1    1235677889999999776642         4566677677778888877654

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.26  E-value=0.00031  Score=65.40  Aligned_cols=102  Identities=15%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ..+.++||||+-|....+|..+. -.+++-+|.|..|++.++.- +..++. +....+|-+.+     ++.++++|.|..
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~-qdp~i~-~~~~v~DEE~L-----df~ens~DLiis  143 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA-QDPSIE-TSYFVGDEEFL-----DFKENSVDLIIS  143 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc-CCCceE-EEEEecchhcc-----cccccchhhhhh
Confidence            46789999999999999998875 45799999999999988653 223332 44555665444     346899999976


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ...-.|..+      +  |..+.++...|||+|.|+-.
T Consensus       144 SlslHW~Nd------L--Pg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  144 SLSLHWTND------L--PGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhcc------C--chHHHHHHHhcCCCccchhH
Confidence            655455211      1  57888999999999998754

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.23  E-value=0.0089  Score=52.06  Aligned_cols=88  Identities=14%  Similarity=0.218  Sum_probs=60.0

Q ss_pred             eEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeC---CCCCCCCcchhhhhhHHHHH
Q 014711          256 NFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQC---PNPDFNRPEHRWRMVQRSLV  331 (420)
Q Consensus       256 ~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f---pdp~~k~~~~k~Rl~~~~~l  331 (420)
                      +|+|+||.+.+++.+++++.+.++. ++++++.+=..+ ..+++  ++++|.+.+|+   |-.-  +.-.-+.-..-..+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l-~~~i~--~~~v~~~iFNLGYLPggD--k~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL-DEYIP--EGPVDAAIFNLGYLPGGD--KSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG-GGT----S--EEEEEEEESB-CTS---TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH-HhhCc--cCCcCEEEEECCcCCCCC--CCCCcCcHHHHHHH
Confidence            5899999999999999999998875 599999887776 45552  35899998883   3211  11111122234678


Q ss_pred             HHHHhhccCCeEEEEEe
Q 014711          332 EAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       332 ~~i~~~LkpgG~l~~~t  348 (420)
                      +.+.+.|+|||.+.+..
T Consensus        76 ~~al~lL~~gG~i~iv~   92 (140)
T PF06962_consen   76 EAALELLKPGGIITIVV   92 (140)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhhccCCEEEEEE
Confidence            99999999999998875

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.22  E-value=0.00047  Score=62.35  Aligned_cols=100  Identities=17%  Similarity=0.226  Sum_probs=73.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ...+.|+|.|+|-++.-.|+.  .-+|++||.+|.....|.+|++-.|..|+.++.+||.+..   |    ..-|.|.+-
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---f----e~ADvvicE  103 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---F----ENADVVICE  103 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc---c----cccceeHHH
Confidence            367999999999998877766  6689999999999999999998889999999999998872   1    234665443


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      .-|-..-.-      -+-..++.+...||.++.++
T Consensus       104 mlDTaLi~E------~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         104 MLDTALIEE------KQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             HhhHHhhcc------cccHHHHHHHHHhhcCCccc
Confidence            222210000      01256777777888888875

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.18  E-value=0.0035  Score=60.82  Aligned_cols=107  Identities=13%  Similarity=0.154  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCccHH-HHHHHHhC-CCCeEEEEeCChHHHHHHHHHhH-HhCCC-cEEEEEcChhhhhhhhhccCCCeEeE
Q 014711          231 QPLVVDIGSGNGLF-LLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQ-LSGIT-NGYFIATNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       231 ~~~vLDIGcG~G~~-~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~-~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~  306 (420)
                      ..+|+=||||.=-+ ++.|++++ ++..|+++|+++++++.+++-+. ..++. ++.|+++|+.+...     .-..+|.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----dl~~~Dv  195 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----DLKEYDV  195 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----G----SE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----ccccCCE
Confidence            35899999996555 55667654 68899999999999999998776 44554 59999999987621     1247899


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      |++----..  ...+|     .+++..+.+.++||..+.+++-
T Consensus       196 V~lAalVg~--~~e~K-----~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  196 VFLAALVGM--DAEPK-----EEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             EEE-TT-S------SH-----HHHHHHHHHHS-TTSEEEEEE-
T ss_pred             EEEhhhccc--ccchH-----HHHHHHHHhhCCCCcEEEEecc
Confidence            987521111  11122     4789999999999999999973

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=97.13  E-value=0.0017  Score=58.41  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=81.4

Q ss_pred             EcCCccHHHHHHHHhCC-CCeEEEE--eCChHHHHHH---HHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          237 IGSGNGLFLLGMARKRK-DLNFLGL--EVNGKLVTHC---RDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       237 IGcG~G~~~~~lA~~~P-~~~viGi--Dis~~~i~~A---~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ||=|+=.|+..||++++ ..++++.  |-.++..+.-   ..+++...-.++ .....||..+ ...+......||.|++
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l-~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKL-HKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcc-cccccccCCcCCEEEE
Confidence            67777788899999977 5566654  4444444333   244444322233 3456788887 3333224678999999


Q ss_pred             eCCCCCCCCcc-----hhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHH-HHcCCcee
Q 014711          310 QCPNPDFNRPE-----HRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQF-LEYGKGKL  369 (420)
Q Consensus       310 ~fpdp~~k~~~-----~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l-~~~g~~~~  369 (420)
                      |||-.-....+     +.+|.+=..|+..+.++|+++|.+++.. +.++|-.|-...+ +..|+...
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~  148 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV  148 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence            99876411111     1222233699999999999999999974 4455655544444 45565543

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.10  E-value=0.02  Score=55.80  Aligned_cols=63  Identities=14%  Similarity=0.196  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF  293 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~  293 (420)
                      .+...+|.=.|-|.++..+.++.|+. +++|+|.++.+++.|+++....+ .++++++.+..++.
T Consensus        23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~   86 (314)
T COG0275          23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLA   86 (314)
T ss_pred             CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHH
Confidence            35889999999999999999998765 59999999999999999987665 68999999877763

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.10  E-value=0.0026  Score=61.42  Aligned_cols=94  Identities=15%  Similarity=0.209  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||+|.|.++..|++..  .+++++|+++.+++..+++..  .-+|++++++|+..+.....  ....-..|+.
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~--~~~~~~~vv~  103 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDL--LKNQPLLVVG  103 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGH--CSSSEEEEEE
T ss_pred             CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHh--hcCCceEEEE
Confidence            46889999999999999999985  899999999999999888765  45689999999998732111  1234455666


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH  340 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkp  340 (420)
                      +-  |+         -+...++.++...-+.
T Consensus       104 Nl--Py---------~is~~il~~ll~~~~~  123 (262)
T PF00398_consen  104 NL--PY---------NISSPILRKLLELYRF  123 (262)
T ss_dssp             EE--TG---------TGHHHHHHHHHHHGGG
T ss_pred             Ee--cc---------cchHHHHHHHhhcccc
Confidence            63  33         1233566666654344

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=97.10  E-value=0.0036  Score=59.65  Aligned_cols=74  Identities=20%  Similarity=0.182  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh------C--C-CcEEEEEcChhhhhhhhhccCC
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS------G--I-TNGYFIATNATSTFRSIVASYP  301 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~------~--l-~nv~~~~~Da~~~~~~~~~~~~  301 (420)
                      .+.|||.=+|+|..+..+|..  ++.|+++|.++......++++++.      +  + .+++++++|+.+++..    ..
T Consensus        89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~----~~  162 (250)
T PRK10742         89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----IT  162 (250)
T ss_pred             CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh----CC
Confidence            468999999999999999988  778999999999999998888774      3  2 5799999999998753    23


Q ss_pred             CeEeEEEEe
Q 014711          302 GKLILVSIQ  310 (420)
Q Consensus       302 ~~~d~i~~~  310 (420)
                      .+||.||+-
T Consensus       163 ~~fDVVYlD  171 (250)
T PRK10742        163 PRPQVVYLD  171 (250)
T ss_pred             CCCcEEEEC
Confidence            479999874

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.07  E-value=0.0044  Score=63.02  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=85.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCc--EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~n--v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ..++||-=+|+|.=++.+++..+ ...|+.-|+|+++++..++|++.+++++  +.+.+.||..++.    .....||.|
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~I  125 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVI  125 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEE
Confidence            45899999999999999999944 4689999999999999999999999876  9999999998863    136789999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHHHHHH-HHHHHHHcC
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLR-MKQQFLEYG  365 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~~~~~-~~~~l~~~g  365 (420)
                      .+   ||+=   .+      ..||+.+.+.++.||.+.+. ||...+.-. -...+..+|
T Consensus       126 Dl---DPfG---Sp------~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg  173 (377)
T PF02005_consen  126 DL---DPFG---SP------APFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYG  173 (377)
T ss_dssp             EE-----SS-----------HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHS
T ss_pred             Ee---CCCC---Cc------cHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcC
Confidence            88   5641   11      27999999999999999986 665443221 233445554

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.0047  Score=61.56  Aligned_cols=107  Identities=14%  Similarity=0.177  Sum_probs=87.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ...|+|-=+|+|.=++.+|..-+...++.-|+|+++++..++|+..+...+...+..|+..++.+    ....||.|-+ 
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----~~~~fd~IDi-  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----LHRAFDVIDI-  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----cCCCccEEec-
Confidence            57899999999999999999988889999999999999999999888566777777999988643    2367899876 


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHHH
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV  353 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~~  353 (420)
                        ||+=.   +      -.|+..+.+.++.||.+.+. ||...+
T Consensus       128 --DPFGS---P------aPFlDaA~~s~~~~G~l~vTATD~a~L  160 (380)
T COG1867         128 --DPFGS---P------APFLDAALRSVRRGGLLCVTATDTAPL  160 (380)
T ss_pred             --CCCCC---C------chHHHHHHHHhhcCCEEEEEecccccc
Confidence              45411   1      17999999999999999985 665443

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.00  E-value=0.00094  Score=67.36  Aligned_cols=103  Identities=15%  Similarity=0.087  Sum_probs=77.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +..++|+|||.|.....++. +....++|+|.++-.+.++...+....++| ..++.+|..+.     ++++..+|.+++
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-----~fedn~fd~v~~  184 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-----PFEDNTFDGVRF  184 (364)
T ss_pred             cccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-----CCCccccCcEEE
Confidence            44789999999999988875 557899999999999999988887777765 34466676655     236888998876


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +-.-.+ ...+       ..++.+++++++|||++...
T Consensus       185 ld~~~~-~~~~-------~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  185 LEVVCH-APDL-------EKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             Eeeccc-CCcH-------HHHHHHHhcccCCCceEEeH
Confidence            632211 1111       27899999999999999874

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.99  E-value=0.0059  Score=60.12  Aligned_cols=79  Identities=11%  Similarity=0.135  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~  308 (420)
                      ++.+++|.=||.|..+..+++..|+..++|+|.++.+++.|++++...+ .++.+++++..++. ..+.. ...++|.|+
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~-~~l~~~~~~~vDgIl   97 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFF-EHLDELLVTKIDGIL   97 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHH-HHHHhcCCCcccEEE
Confidence            4578999999999999999999878999999999999999999876543 57999999998873 33321 235688885


Q ss_pred             Ee
Q 014711          309 IQ  310 (420)
Q Consensus       309 ~~  310 (420)
                      +.
T Consensus        98 ~D   99 (305)
T TIGR00006        98 VD   99 (305)
T ss_pred             Ee
Confidence            43

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.81  E-value=0.025  Score=53.51  Aligned_cols=130  Identities=12%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..||=+|=.. ..++++|...+..+++-+|+++..++.-++.+.+.|++ ++.++.|+.+-+++.+   .+.||.++.
T Consensus        44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~---~~~fD~f~T  118 (243)
T PF01861_consen   44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL---RGKFDVFFT  118 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT---SS-BSEEEE
T ss_pred             cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH---hcCCCEEEe
Confidence            467899888444 33455666677789999999999999999999999997 9999999998765433   578999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCe-EEEEEe-Cc---HHHHHHHHHHHHHcCCceeEeec
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQS-DI---EEVMLRMKQQFLEYGKGKLVLVQ  373 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG-~l~~~t-d~---~~~~~~~~~~l~~~g~~~~~~~~  373 (420)
                      .  .||-...      + .-|+.+....||.-| ..+|.. ..   ......+++.+.+.|+.+..+..
T Consensus       119 D--PPyT~~G------~-~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~  178 (243)
T PF01861_consen  119 D--PPYTPEG------L-KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP  178 (243)
T ss_dssp             -----SSHHH------H-HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred             C--CCCCHHH------H-HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence            5  4442111      0 368899999999766 444442 22   22334588888899987655443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.79  E-value=0.012  Score=56.74  Aligned_cols=123  Identities=15%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             CEEEEEcCCcc--HHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc--------cC
Q 014711          232 PLVVDIGSGNG--LFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA--------SY  300 (420)
Q Consensus       232 ~~vLDIGcG~G--~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~--------~~  300 (420)
                      ...||||||-=  ..+-+.|++ .|+++|+=+|..+-.+..++..+....-....++++|+.+- ...+.        ..
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p-~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP-EAILAHPEVRGLLDF  148 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H-HHHHCSHHHHCC--T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH-HHHhcCHHHHhcCCC
Confidence            56899999943  345566666 89999999999999999998877544322389999999875 22221        02


Q ss_pred             CCeEeEEEE---eC-CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---C-cHHHHHHHHHHHHHcC
Q 014711          301 PGKLILVSI---QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---D-IEEVMLRMKQQFLEYG  365 (420)
Q Consensus       301 ~~~~d~i~~---~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---d-~~~~~~~~~~~l~~~g  365 (420)
                      +..+-.+.+   +| +|.    ..+      ..+++.+...|.||.+|.+..   | .+...+.+.+.+.+.+
T Consensus       149 ~rPVavll~~vLh~v~D~----~dp------~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~  211 (267)
T PF04672_consen  149 DRPVAVLLVAVLHFVPDD----DDP------AGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG  211 (267)
T ss_dssp             TS--EEEECT-GGGS-CG----CTH------HHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred             CCCeeeeeeeeeccCCCc----cCH------HHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence            344444432   11 221    111      379999999999999999974   2 2333455566666554

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.52  E-value=0.038  Score=53.60  Aligned_cols=122  Identities=18%  Similarity=0.210  Sum_probs=96.7

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHh--C--CCcEEEEEcChhhhhhhhhccCCCe
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLS--G--ITNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~--~--l~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      ++...+|=||=|.|.+....+++ +. .+++-+|+....++..++.....  +  -+.|.++.+|...++...   ..+.
T Consensus       120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~~  195 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KENP  195 (337)
T ss_pred             CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccCC
Confidence            46788999999999999998887 44 37999999999999888875542  3  346999999999986543   4789


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHH
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK  358 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~  358 (420)
                      +|.|..--+||--    +.-.++++.++..+.+.||+||+++.+.|.-++.....
T Consensus       196 ~dVii~dssdpvg----pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i  246 (337)
T KOG1562|consen  196 FDVIITDSSDPVG----PACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYI  246 (337)
T ss_pred             ceEEEEecCCccc----hHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHH
Confidence            9999998888862    33346778999999999999999999988755544333

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.38  E-value=0.072  Score=48.49  Aligned_cols=107  Identities=18%  Similarity=0.204  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-Chhhhh--hhhhc-cCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTF--RSIVA-SYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~--~~~~~-~~~~~~  304 (420)
                      ++.+|||+||..|.++.-.-++ +|+..++|||+-.-           ..+..+.++++ |..+-.  ..++. .+...+
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V  137 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRPV  137 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence            3789999999999999988777 59999999998642           22345667776 655421  11221 146778


Q ss_pred             eEEEEe-CCCCC-CCCcchhhhhhH--HHHHHHHHhhccCCeEEEEEe
Q 014711          305 ILVSIQ-CPNPD-FNRPEHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       305 d~i~~~-fpdp~-~k~~~~k~Rl~~--~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      |.|... .|++- ...++|. |++.  ...+.-....++|+|.|+..+
T Consensus       138 dvVlSDMapnaTGvr~~Dh~-~~i~LC~s~l~~al~~~~p~g~fvcK~  184 (232)
T KOG4589|consen  138 DVVLSDMAPNATGVRIRDHY-RSIELCDSALLFALTLLIPNGSFVCKL  184 (232)
T ss_pred             cEEEeccCCCCcCcchhhHH-HHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence            988654 23332 1111221 2221  344555667788999999886

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.028  Score=53.02  Aligned_cols=148  Identities=18%  Similarity=0.111  Sum_probs=97.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.++||||.-||.|+-.+.++- ..+|+|+|+....+..--+    ....-+.+-..|+..+.++.+   .+..|.+.+
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR----~d~rV~~~E~tN~r~l~~~~~---~~~~d~~v~  150 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR----NDPRVIVLERTNVRYLTPEDF---TEKPDLIVI  150 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh----cCCcEEEEecCChhhCCHHHc---ccCCCeEEE
Confidence            57999999999999999998873 5689999999876643322    122225566678877755544   224555543


Q ss_pred             e--CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCC
Q 014711          310 Q--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  387 (420)
Q Consensus       310 ~--fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~  387 (420)
                      -  |-.           +  ..+|..+...|+|++.+++-.  .++++..++.+...|.    + .|+.           
T Consensus       151 DvSFIS-----------L--~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~~v~kkGv----v-~d~~-----------  199 (245)
T COG1189         151 DVSFIS-----------L--KLILPALLLLLKDGGDLVLLV--KPQFEAGREQVGKKGV----V-RDPK-----------  199 (245)
T ss_pred             Eeehhh-----------H--HHHHHHHHHhcCCCceEEEEe--cchhhhhhhhcCcCce----e-cCcc-----------
Confidence            2  210           1  367888999999999887753  5677877776654442    1 2211           


Q ss_pred             CCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          388 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       388 ~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                       .......+.+....+.|+.+..+.+..+.
T Consensus       200 -~~~~v~~~i~~~~~~~g~~~~gl~~Spi~  228 (245)
T COG1189         200 -LHAEVLSKIENFAKELGFQVKGLIKSPIK  228 (245)
T ss_pred             -hHHHHHHHHHHHHhhcCcEEeeeEccCcc
Confidence             11234556677777777777777777665

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.24  E-value=0.02  Score=56.83  Aligned_cols=154  Identities=14%  Similarity=0.161  Sum_probs=92.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      -...+|+|-|.|..+-.+...||.  +-|++.....+..++.... .|   |..+-+|..+-    .|  .  -|.|++.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~----~P--~--~daI~mk  243 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQD----TP--K--GDAIWMK  243 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC---cceeccccccc----CC--C--cCeEEEE
Confidence            478999999999999999999987  6678888877777666553 33   77778888654    22  2  2477665


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCCCC
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS  390 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~~~  390 (420)
                      +.-...-+.+    +  -.||+.++..|+|||.+++.-..-+- +......    ........|.+.. .+.+    ..-
T Consensus       244 WiLhdwtDed----c--vkiLknC~~sL~~~GkIiv~E~V~p~-e~~~dd~----~s~v~~~~d~lm~-~~~~----~Gk  307 (342)
T KOG3178|consen  244 WILHDWTDED----C--VKILKNCKKSLPPGGKIIVVENVTPE-EDKFDDI----DSSVTRDMDLLML-TQTS----GGK  307 (342)
T ss_pred             eecccCChHH----H--HHHHHHHHHhCCCCCEEEEEeccCCC-CCCcccc----ccceeehhHHHHH-HHhc----cce
Confidence            3222111111    2  38999999999999999885211110 0000000    0000011121110 1111    011


Q ss_pred             CCCCCHHHHHHHHCCCCeEEEEEE
Q 014711          391 FGVRSDWEQHVIDRGAPMYRLMLS  414 (420)
Q Consensus       391 ~~~~T~~E~~~~~~G~~i~~~~~~  414 (420)
                      .....+||..+.++|++.+.+.+.
T Consensus       308 ert~~e~q~l~~~~gF~~~~~~~~  331 (342)
T KOG3178|consen  308 ERTLKEFQALLPEEGFPVCMVALT  331 (342)
T ss_pred             eccHHHHHhcchhhcCceeEEEec
Confidence            245688899999999999987654

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.03  E-value=0.032  Score=53.18  Aligned_cols=73  Identities=16%  Similarity=0.162  Sum_probs=56.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ..+|+|||||---+++..-...|+..|+|+||+..+++...+-....+. +..+...|...-.      +....|...++
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~------~~~~~DlaLll  178 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDP------PKEPADLALLL  178 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSH------TTSEESEEEEE
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccC------CCCCcchhhHH
Confidence            6789999999999999888888899999999999999999988877774 4666666775541      46778988876

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=95.94  E-value=0.022  Score=52.11  Aligned_cols=71  Identities=20%  Similarity=0.292  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|+|+|.-.+.-|+.. ...++..|+.+..+...+-|+..++. ++.|.+.|..-        .+..+|.+..
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--------~~~~~Dl~La  148 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--------SPPAFDLLLA  148 (218)
T ss_pred             ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--------CCcceeEEEe
Confidence            36889999999999999888763 46899999999999888888887774 68899888854        2667899866


Q ss_pred             e
Q 014711          310 Q  310 (420)
Q Consensus       310 ~  310 (420)
                      .
T Consensus       149 g  149 (218)
T COG3897         149 G  149 (218)
T ss_pred             e
Confidence            4

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=95.80  E-value=0.089  Score=52.67  Aligned_cols=119  Identities=16%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCC---CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhh-h----ccC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKD---LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSI-V----ASY  300 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~---~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~-~----~~~  300 (420)
                      ++..|||++...|.=++.|.+. ++.   ..+++=|+++..+...++........|+.....|+..+ +.. +    +..
T Consensus       155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~-p~~~~~~~~~~~  233 (375)
T KOG2198|consen  155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLF-PNIYLKDGNDKE  233 (375)
T ss_pred             CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceec-cccccccCchhh
Confidence            4789999999999999988777 433   37999999999999998888666666777777777665 222 1    011


Q ss_pred             CCeEeEEEEeCC---CCCCCCc-------chhhh-----hhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          301 PGKLILVSIQCP---NPDFNRP-------EHRWR-----MVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       301 ~~~~d~i~~~fp---dp~~k~~-------~~k~R-----l~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ...||.|.+.-|   |.++.+.       ....|     .+|-++|+.-.+.||+||.++-.|-
T Consensus       234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC  297 (375)
T KOG2198|consen  234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC  297 (375)
T ss_pred             hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence            245899876543   3322111       11112     3567899999999999999998873

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.70  E-value=0.033  Score=54.92  Aligned_cols=79  Identities=14%  Similarity=0.087  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~  308 (420)
                      ++..++|.=.|.|.++..+.++.|+..++|+|.++.+++.|++++... -.++.+++++..++...+-.. ....+|.|.
T Consensus        20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL   98 (310)
T PF01795_consen   20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL   98 (310)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred             CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence            467999999999999999999999999999999999999998887644 357999999988873322221 235788885


Q ss_pred             E
Q 014711          309 I  309 (420)
Q Consensus       309 ~  309 (420)
                      +
T Consensus        99 ~   99 (310)
T PF01795_consen   99 F   99 (310)
T ss_dssp             E
T ss_pred             E
Confidence            4

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.67  E-value=0.095  Score=52.32  Aligned_cols=86  Identities=12%  Similarity=0.123  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..+|||||++|.++-.|+++  +..|++||..+ +   + .++  ...++|..++.|...+.+     ....+|.+.+
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l---~-~~L--~~~~~V~h~~~d~fr~~p-----~~~~vDwvVc  276 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-M---A-QSL--MDTGQVEHLRADGFKFRP-----PRKNVDWLVC  276 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-c---C-Hhh--hCCCCEEEEeccCcccCC-----CCCCCCEEEE
Confidence            4789999999999999999998  67999999554 1   1 111  234579999999987632     2567888877


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD  341 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg  341 (420)
                      .....      +      .+.++.+.++|..|
T Consensus       277 Dmve~------P------~rva~lm~~Wl~~g  296 (357)
T PRK11760        277 DMVEK------P------ARVAELMAQWLVNG  296 (357)
T ss_pred             ecccC------H------HHHHHHHHHHHhcC
Confidence            53221      1      15667777788665

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.66  E-value=0.12  Score=50.35  Aligned_cols=124  Identities=16%  Similarity=0.140  Sum_probs=72.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ..+|||+|||.|..+.+....+|. ..++.+|.|+.|++.++..+..... .+.... .+..   .+..+  -..-|.|+
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~---~~~~~--~~~~DLvi  107 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLY---RDFLP--FPPDDLVI  107 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhh---ccccc--CCCCcEEE
Confidence            568999999999988887777774 4799999999999999887653321 111111 1111   00011  11238887


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE-EeCcHHH---HHHHHHHHHHcCCce
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL-QSDIEEV---MLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~-~td~~~~---~~~~~~~l~~~g~~~  368 (420)
                      +.|.--....   ..|   .++++.+.+.+.+  .|++ +...+.-   ...+++.+.+.++.+
T Consensus       108 ~s~~L~EL~~---~~r---~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v  163 (274)
T PF09243_consen  108 ASYVLNELPS---AAR---AELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHV  163 (274)
T ss_pred             EehhhhcCCc---hHH---HHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence            6652111111   112   3788888887766  4444 4333332   335666776666553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=95.62  E-value=0.0056  Score=56.35  Aligned_cols=92  Identities=18%  Similarity=0.241  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.++||+|.|.|.++..++..+.  .|++.|.|..|..+.+++    +. ||  +  .+.+..+     .+-.+|.|.+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----~y-nV--l--~~~ew~~-----t~~k~dli~c  175 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----NY-NV--L--TEIEWLQ-----TDVKLDLILC  175 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----CC-ce--e--eehhhhh-----cCceeehHHH
Confidence            457899999999999999998864  488999999998776553    22 11  1  1111111     2345677654


Q ss_pred             e-CCCCCCCCcchhhhhhH-HHHHHHHHhhccC-CeEEEEE
Q 014711          310 Q-CPNPDFNRPEHRWRMVQ-RSLVEAVSDLLVH-DGKVFLQ  347 (420)
Q Consensus       310 ~-fpdp~~k~~~~k~Rl~~-~~~l~~i~~~Lkp-gG~l~~~  347 (420)
                      + .-|-+          .+ -.+|+.++.+|+| +|++++.
T Consensus       176 lNlLDRc----------~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  176 LNLLDRC----------FDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             HHHHHhh----------cChHHHHHHHHHHhccCCCcEEEE
Confidence            3 11111          11 2788999999999 8887664

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.51  E-value=0.021  Score=58.85  Aligned_cols=108  Identities=14%  Similarity=0.196  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      +..+|||.=|++|.-++..|+..|+. .+++-|.++.++...++|++.++..+ +...+.||..+.-.. +.....||.|
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~-~~~~~~FDvI  187 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH-PMVAKFFDVI  187 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc-cccccccceE
Confidence            46789999999999999999998886 79999999999999999998887765 778889998764221 1124689999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCc
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDI  350 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~  350 (420)
                      .+   ||+=..         ..||+.+.+.++.||.+++. ||.
T Consensus       188 DL---DPyGs~---------s~FLDsAvqav~~gGLL~vT~TD~  219 (525)
T KOG1253|consen  188 DL---DPYGSP---------SPFLDSAVQAVRDGGLLCVTCTDM  219 (525)
T ss_pred             ec---CCCCCc---------cHHHHHHHHHhhcCCEEEEEecch
Confidence            77   665211         27999999999999999986 453

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.45  E-value=0.064  Score=49.82  Aligned_cols=107  Identities=12%  Similarity=0.115  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh---C-CCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhc--cCCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK---R-KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVA--SYPG  302 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~---~-P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~--~~~~  302 (420)
                      .+.+|+|+|.-.|..++-+|..   . ++.+|+|+|+.-....+....  .+.+ ++++|+++|..+. .....  ....
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e--~hp~~~rI~~i~Gds~d~-~~~~~v~~~~~  108 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE--SHPMSPRITFIQGDSIDP-EIVDQVRELAS  108 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG--G----TTEEEEES-SSST-HHHHTSGSS--
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh--hccccCceEEEECCCCCH-HHHHHHHHhhc
Confidence            4689999999999999877653   3 889999999965544322221  2222 5799999999765 11110  0011


Q ss_pred             eEeEE-EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          303 KLILV-SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       303 ~~d~i-~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ..+.+ .+.  |..|...|-      -+-|+.+...+++|+++++.
T Consensus       109 ~~~~vlVil--Ds~H~~~hv------l~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  109 PPHPVLVIL--DSSHTHEHV------LAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             --SSEEEEE--SS----SSH------HHHHHHHHHT--TT-EEEET
T ss_pred             cCCceEEEE--CCCccHHHH------HHHHHHhCccCCCCCEEEEE
Confidence            12222 222  333222222      25667799999999999874

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=95.12  E-value=0.28  Score=45.73  Aligned_cols=119  Identities=11%  Similarity=0.076  Sum_probs=67.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCC--eEEEEeCChHHHHHHHHHhH--------------------------------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDL--NFLGLEVNGKLVTHCRDSLQ--------------------------------  275 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~--~viGiDis~~~i~~A~~~~~--------------------------------  275 (420)
                      .+-.+-|=+||+|.++..++-.+++.  +++|-||++++++.|++|+.                                
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            35678999999999999988887664  79999999999999998753                                


Q ss_pred             ---------Hh-CCCcEEEEEcChhhhhhh-hhccCCCeEeEEEEeCCCCCCCCcch-hhhhhHHHHHHHHHhhccCCeE
Q 014711          276 ---------LS-GITNGYFIATNATSTFRS-IVASYPGKLILVSIQCPNPDFNRPEH-RWRMVQRSLVEAVSDLLVHDGK  343 (420)
Q Consensus       276 ---------~~-~l~nv~~~~~Da~~~~~~-~~~~~~~~~d~i~~~fpdp~~k~~~~-k~Rl~~~~~l~~i~~~LkpgG~  343 (420)
                               .. +..-..+.+.|+.+--.. -.+ .....|.|+...|-...-.+.. ..---.+++|+.++.+|-+++.
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV  209 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV  209 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence                     01 122356777777763110 011 2334688877644322111111 0011226899999999966666


Q ss_pred             EEEEeCc
Q 014711          344 VFLQSDI  350 (420)
Q Consensus       344 l~~~td~  350 (420)
                      +.+ ||-
T Consensus       210 V~v-~~k  215 (246)
T PF11599_consen  210 VAV-SDK  215 (246)
T ss_dssp             EEE-EES
T ss_pred             EEE-ecC
Confidence            666 653

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.10  E-value=0.1  Score=54.08  Aligned_cols=102  Identities=10%  Similarity=0.069  Sum_probs=74.4

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE---
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI---  309 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~---  309 (420)
                      +++-+|||+-.+...+-+. -...++-+|+|+-.++....+-. ....-.++...|+..+.   |  ++++||.+..   
T Consensus        51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~---f--edESFdiVIdkGt  123 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLV---F--EDESFDIVIDKGT  123 (482)
T ss_pred             eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhcc---C--CCcceeEEEecCc
Confidence            6899999999999888766 24568999999999988876543 23344889999998762   3  6888888742   


Q ss_pred             ---eC---CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 ---QC---PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ---~f---pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                         .|   +++|.+  +     .....+.+++++|++||++...|
T Consensus       124 lDal~~de~a~~~~--~-----~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  124 LDALFEDEDALLNT--A-----HVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             cccccCCchhhhhh--H-----HhhHHHhhHHHHhccCCEEEEEE
Confidence               12   233321  1     12478899999999999987765

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.04  E-value=0.052  Score=56.37  Aligned_cols=120  Identities=14%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCC--eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDL--NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~--~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      -..|+|...|.|.|+++|... |-+  +|+=+ ..++.+..    +-.+|+-.   +..|.    .+.|++++.++|.|+
T Consensus       366 iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~-~~~ntL~v----IydRGLIG---~yhDW----CE~fsTYPRTYDLlH  432 (506)
T PF03141_consen  366 IRNVMDMNAGYGGFAAALIDD-PVWVMNVVPV-SGPNTLPV----IYDRGLIG---VYHDW----CEAFSTYPRTYDLLH  432 (506)
T ss_pred             eeeeeeecccccHHHHHhccC-CceEEEeccc-CCCCcchh----hhhcccch---hccch----hhccCCCCcchhhee
Confidence            356999999999999999764 311  22222 11111111    11233211   11222    344667899999998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      ...--.     ..+.|-.-..+|-++-|+|+|+|.++++ |.....+.+..++....|...
T Consensus       433 A~~lfs-----~~~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~  487 (506)
T PF03141_consen  433 ADGLFS-----LYKDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVR  487 (506)
T ss_pred             hhhhhh-----hhcccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEE
Confidence            652111     1112222257889999999999999996 677888889999999888764

; GO: 0008168 methyltransferase activity

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.88  E-value=0.086  Score=49.18  Aligned_cols=109  Identities=13%  Similarity=0.217  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~i~~  309 (420)
                      .-++|||||=+......   ..+-..|+.||+++.          ..     .+.+.|..+. +  +| ..++.||.|.+
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~----------~~-----~I~qqDFm~r-p--lp~~~~e~FdvIs~  110 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ----------HP-----GILQQDFMER-P--LPKNESEKFDVISL  110 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCC----------CC-----CceeeccccC-C--CCCCcccceeEEEE
Confidence            36799999976655444   345567999999872          11     3456666554 1  11 13567888743


Q ss_pred             ----e-CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeE-----EEEEeC-----cHHHHH--HHHHHHHHcCCceeE
Q 014711          310 ----Q-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-----VFLQSD-----IEEVML--RMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ----~-fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~-----l~~~td-----~~~~~~--~~~~~l~~~g~~~~~  370 (420)
                          + .|+|-       .|   -+.++.+.+.|+|+|.     |++.+.     +..|+.  ...+++...||..+.
T Consensus       111 SLVLNfVP~p~-------~R---G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~  178 (219)
T PF11968_consen  111 SLVLNFVPDPK-------QR---GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK  178 (219)
T ss_pred             EEEEeeCCCHH-------HH---HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence                3 36662       22   3899999999999999     888753     344443  466788899987643

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.87  E-value=0.11  Score=50.26  Aligned_cols=127  Identities=16%  Similarity=0.111  Sum_probs=82.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH---------------------------------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL---------------------------------  276 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~---------------------------------  276 (420)
                      +..+||==|||-|.++-++|++  +..+.|.|.|--|+-..+--+..                                 
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            4688999999999999999999  78999999999997544321110                                 


Q ss_pred             -------hCCCcEEEEEcChhhhhhhhhccCCCeEeEE-EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          277 -------SGITNGYFIATNATSTFRSIVASYPGKLILV-SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       277 -------~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i-~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                             ....|+.+..+|..++...  +...+++|.| +++|-|-.       .-+  -++++.+.++|||||+++ ..
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~--~~~~~~~d~VvT~FFIDTA-------~Ni--~~Yi~tI~~lLkpgG~WI-N~  201 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGP--DENKGSFDVVVTCFFIDTA-------ENI--IEYIETIEHLLKPGGYWI-NF  201 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCC--cccCCcccEEEEEEEeech-------HHH--HHHHHHHHHHhccCCEEE-ec
Confidence                   0012344444555443110  0012577876 44555543       112  279999999999999653 21


Q ss_pred             --------C--------cHHHHHHHHHHHHHcCCceeE
Q 014711          349 --------D--------IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       349 --------d--------~~~~~~~~~~~l~~~g~~~~~  370 (420)
                              +        .+--.++++++.+..||....
T Consensus       202 GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~  239 (270)
T PF07942_consen  202 GPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK  239 (270)
T ss_pred             CCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence                    1        122367889999999998653

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.75  E-value=0.026  Score=46.73  Aligned_cols=42  Identities=24%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             cccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChH
Q 014711          222 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGK  265 (420)
Q Consensus       222 ~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~  265 (420)
                      |.+.....+.+..+|||||+|.+.--|.+.  +..=.|+|....
T Consensus        50 W~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~R   91 (112)
T PF07757_consen   50 WRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDARRR   91 (112)
T ss_pred             HhcccCCCCCCceEEccCCchHHHHHHHhC--CCCccccccccc
Confidence            433333224577999999999998888877  556689997653

; GO: 0008168 methyltransferase activity

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.74  E-value=0.051  Score=48.30  Aligned_cols=127  Identities=18%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh---CCCcEEEEEcChhhhhhhhhccCCCeEeE
Q 014711          231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~---~l~nv~~~~~Da~~~~~~~~~~~~~~~d~  306 (420)
                      +..|||+|-|- |..++.+|...|+..|.-.|=++++++-.++....+   +++.+..+.-+.... ..  ......||.
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a-qs--q~eq~tFDi  106 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA-QS--QQEQHTFDI  106 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh-HH--HHhhCcccE
Confidence            46799999995 455667788899999999999999998877655433   222222222211111 00  002357999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HHHHHHHHHHHHHcCCce
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~~~~~~~~~l~~~g~~~  368 (420)
                      |...  |..|-+-||      ..+++.+.+.|+|.|.-.+-+.- -+..+..++.....||..
T Consensus       107 IlaA--DClFfdE~h------~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v  161 (201)
T KOG3201|consen  107 ILAA--DCLFFDEHH------ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTV  161 (201)
T ss_pred             EEec--cchhHHHHH------HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEE
Confidence            8765  666555555      38999999999999986665532 223444566666777553

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=94.42  E-value=0.14  Score=43.77  Aligned_cols=77  Identities=8%  Similarity=-0.012  Sum_probs=52.3

Q ss_pred             cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHH
Q 014711          281 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ  360 (420)
Q Consensus       281 nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~  360 (420)
                      ++++..+|+.+.++.+    +..+|.+|+.   +....+.+  .+-+.++++.++++++|||.+.-.|-    ...+++.
T Consensus        32 ~L~L~~gDa~~~l~~l----~~~~Da~ylD---gFsP~~nP--elWs~e~~~~l~~~~~~~~~l~Tys~----a~~Vr~~   98 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL----DARFDAWYLD---GFSPAKNP--ELWSEELFKKLARLSKPGGTLATYSS----AGAVRRA   98 (124)
T ss_dssp             EEEEEES-HHHHHHHB-----T-EEEEEE----SS-TTTSG--GGSSHHHHHHHHHHEEEEEEEEES------BHHHHHH
T ss_pred             EEEEEEcHHHHHHHhC----cccCCEEEec---CCCCcCCc--ccCCHHHHHHHHHHhCCCcEEEEeec----hHHHHHH
Confidence            4889999998886542    4689999874   33222222  24457999999999999999876553    3458889


Q ss_pred             HHHcCCceeE
Q 014711          361 FLEYGKGKLV  370 (420)
Q Consensus       361 l~~~g~~~~~  370 (420)
                      |.+.||.+..
T Consensus        99 L~~aGF~v~~  108 (124)
T PF05430_consen   99 LQQAGFEVEK  108 (124)
T ss_dssp             HHHCTEEEEE
T ss_pred             HHHcCCEEEE
Confidence            9999988643

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.42  E-value=0.4  Score=45.43  Aligned_cols=125  Identities=14%  Similarity=0.087  Sum_probs=80.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..||=+|.++|....+.+.. -|+..|+++|.|...=.....-+.  ..+|+-.+.-||..- ..+-- .-.-+|.||
T Consensus       156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--kRtNiiPIiEDArhP-~KYRm-lVgmVDvIF  231 (317)
T KOG1596|consen  156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--KRTNIIPIIEDARHP-AKYRM-LVGMVDVIF  231 (317)
T ss_pred             CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--ccCCceeeeccCCCc-hheee-eeeeEEEEe
Confidence            4789999999999999999887 699999999999654332222221  236899999999764 11100 123678887


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---------CcHHHHHHHHHHHHHcCCce
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---------d~~~~~~~~~~~l~~~g~~~  368 (420)
                      ...+.|-      ..|    -+.-.....||+||-|.+..         +.+..+..-.+.|++..+..
T Consensus       232 aDvaqpd------q~R----ivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP  290 (317)
T KOG1596|consen  232 ADVAQPD------QAR----IVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKP  290 (317)
T ss_pred             ccCCCch------hhh----hhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCc
Confidence            6655552      112    23345677899999998853         23444444444555554443

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=94.34  E-value=0.22  Score=52.49  Aligned_cols=117  Identities=19%  Similarity=0.167  Sum_probs=77.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCC----CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhh-ccCCCeE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRK----DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIV-ASYPGKL  304 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P----~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~-~~~~~~~  304 (420)
                      ..+|.|-.||+|.+.+..++..-    +..++|.|+++.....|+-+.--+|+. ++...++|...- +..- ......|
T Consensus       187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~-~~~~~~~~~~~~  265 (489)
T COG0286         187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN-PKHDDKDDKGKF  265 (489)
T ss_pred             CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC-CcccccCCccce
Confidence            45899999999999888776642    378999999999999999999888886 456666665443 1110 0123568


Q ss_pred             eEEEEeCCCC---CCCCc---c-hhhhh---------hH-HHHHHHHHhhccCCeEEEEEe
Q 014711          305 ILVSIQCPNP---DFNRP---E-HRWRM---------VQ-RSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       305 d~i~~~fpdp---~~k~~---~-~k~Rl---------~~-~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      |.|..+-|.-   |-...   . ..++.         -. ..|+..+...|+|||+..+..
T Consensus       266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl  326 (489)
T COG0286         266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL  326 (489)
T ss_pred             eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence            9888873321   21110   0 00000         01 578999999999988666543

>PRK13699 putative methylase; Provisional

Probab=94.29  E-value=0.23  Score=47.00  Aligned_cols=82  Identities=11%  Similarity=0.073  Sum_probs=53.6

Q ss_pred             EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCC-cch-hhh-------hhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014711          282 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PEH-RWR-------MVQRSLVEAVSDLLVHDGKVFLQSDIEE  352 (420)
Q Consensus       282 v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~-~~~-k~R-------l~~~~~l~~i~~~LkpgG~l~~~td~~~  352 (420)
                      .+++++|+.+.+.. +  +++++|+|+..  .|+... ++. .+.       -....++.+++|+|||||.+++-+++..
T Consensus         2 ~~l~~gD~le~l~~-l--pd~SVDLIiTD--PPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~   76 (227)
T PRK13699          2 SRFILGNCIDVMAR-F--PDNAVDFILTD--PPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR   76 (227)
T ss_pred             CeEEechHHHHHHh-C--CccccceEEeC--CCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc
Confidence            46889999988653 3  58999999775  444311 100 110       0124788999999999999987666543


Q ss_pred             HHHHHHHHHHHcCCcee
Q 014711          353 VMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       353 ~~~~~~~~l~~~g~~~~  369 (420)
                      . ......+++.||...
T Consensus        77 ~-~~~~~al~~~GF~l~   92 (227)
T PRK13699         77 V-DRFMAAWKNAGFSVV   92 (227)
T ss_pred             H-HHHHHHHHHCCCEEe
Confidence            2 335567788887643

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.03  E-value=0.18  Score=52.33  Aligned_cols=132  Identities=7%  Similarity=0.030  Sum_probs=92.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc--CCCeEeEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS--YPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~--~~~~~d~i~  308 (420)
                      ...+|=+|-|.|.+..-+-...|...++++|+.+.+++.|.++..-..-.+...+..|..+++.+....  .+..+|.+.
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~  375 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM  375 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence            567888999999999999989999999999999999999998765433234556667777765544321  346788886


Q ss_pred             Ee--CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE--eCcHHHHHHHHHHHHH
Q 014711          309 IQ--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLE  363 (420)
Q Consensus       309 ~~--fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~--td~~~~~~~~~~~l~~  363 (420)
                      +.  -+|++ -..-+....+.+.+|..+...|.|-|.|.+.  +-+..+..+++.-|+.
T Consensus       376 ~dvds~d~~-g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~  433 (482)
T KOG2352|consen  376 VDVDSKDSH-GMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK  433 (482)
T ss_pred             EECCCCCcc-cCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence            64  33422 1111222345568899999999999998774  5555666666655543

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=93.96  E-value=0.6  Score=45.39  Aligned_cols=125  Identities=14%  Similarity=0.099  Sum_probs=78.1

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  312 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp  312 (420)
                      .++|+-||.|.+...+.+.. -..+.++|+++.+++..+.|..     +. ++++|+.++....+   ...+|.++..+|
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~~~---~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEKDF---IPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchhhc---CCCCCEEEeCCC
Confidence            48999999999988887763 2358899999999988877753     21 66788887632211   346899888754


Q ss_pred             CC-CCCC------cchhhhhhHHHHHHHHHhhccCCeEEEEE-------eCcHHHHHHHHHHHHHcCCceeE
Q 014711          313 NP-DFNR------PEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       313 dp-~~k~------~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-------td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      =. +...      .+.+..++ ..+++.+ +.++|- .|+++       .+....+..+++.|++.|+...+
T Consensus        72 Cq~fS~ag~~~~~~d~r~~L~-~~~~~~i-~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~  140 (275)
T cd00315          72 CQPFSIAGKRKGFEDTRGTLF-FEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW  140 (275)
T ss_pred             ChhhhHHhhcCCCCCchHHHH-HHHHHHH-HhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence            21 1111      11222233 2455433 445675 44444       12234567788899999886543

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK11524 putative methyltransferase; Provisional

Probab=93.94  E-value=0.25  Score=48.21  Aligned_cols=81  Identities=9%  Similarity=0.077  Sum_probs=51.7

Q ss_pred             CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcc---h-----hhhhh--HHHHHHHHHhhccCCeEEEEEeC
Q 014711          280 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE---H-----RWRMV--QRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       280 ~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~---~-----k~Rl~--~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      .+.+++++|+.+.+.. +  +++++|+|++.  .|+.....   .     ..+..  -..++.++.++|||||.|++.++
T Consensus         7 ~~~~i~~gD~~~~l~~-l--~~~siDlIitD--PPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524          7 EAKTIIHGDALTELKK-I--PSESVDLIFAD--PPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             CCCEEEeccHHHHHHh-c--ccCcccEEEEC--CCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            4568999999997543 3  47899999885  34322110   0     01111  14788999999999999999877


Q ss_pred             cHHHHHHHHHHHHHcCCc
Q 014711          350 IEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       350 ~~~~~~~~~~~l~~~g~~  367 (420)
                      ..... . ...+.+.+|.
T Consensus        82 ~~~~~-~-~~~~~~~~f~   97 (284)
T PRK11524         82 TENMP-F-IDLYCRKLFT   97 (284)
T ss_pred             chhhh-H-HHHHHhcCcc
Confidence            65432 2 3344455554

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=93.91  E-value=0.26  Score=45.23  Aligned_cols=130  Identities=15%  Similarity=0.036  Sum_probs=76.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHH----HHHH--HHhHHhCCCcEEEEEcChhhhhhhhhccCCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLV----THCR--DSLQLSGITNGYFIATNATSTFRSIVASYPG  302 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i----~~A~--~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~  302 (420)
                      .+..|+|+=.|.|.++.-++.. -|...|+++--.+...    ...+  .-..+....|+..+-.+...+.      +++
T Consensus        48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~------~pq  121 (238)
T COG4798          48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG------APQ  121 (238)
T ss_pred             CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC------CCC
Confidence            5789999999999999999987 6777888874333211    1111  1112233456665555554441      355


Q ss_pred             eEeEEEE--eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe----------CcHHH----HHHHHHHHHHcCC
Q 014711          303 KLILVSI--QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS----------DIEEV----MLRMKQQFLEYGK  366 (420)
Q Consensus       303 ~~d~i~~--~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t----------d~~~~----~~~~~~~l~~~g~  366 (420)
                      ..|.++.  ++-|-+.+.-|..   .-..+.+.+++.|||||.+.+.-          |....    ..-+++..+..||
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~~~---~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGF  198 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIHPA---TAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGF  198 (238)
T ss_pred             cccccccchhhhhhhccccCcc---hHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcc
Confidence            5666643  2233333333322   22577889999999999998751          11111    1235666777787


Q ss_pred             ce
Q 014711          367 GK  368 (420)
Q Consensus       367 ~~  368 (420)
                      ..
T Consensus       199 kl  200 (238)
T COG4798         199 KL  200 (238)
T ss_pred             ee
Confidence            64

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=93.58  E-value=0.24  Score=46.95  Aligned_cols=79  Identities=20%  Similarity=0.220  Sum_probs=48.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHH---HHhHHhC-C-----CcEEEEEcChhhhhhhhhccCC
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR---DSLQLSG-I-----TNGYFIATNATSTFRSIVASYP  301 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~---~~~~~~~-l-----~nv~~~~~Da~~~~~~~~~~~~  301 (420)
                      .+.|||.=||-|.-++-+|..  +++|+++|.|+-+....+   +++.... .     .+++++++|+.+++.    .++
T Consensus        76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~  149 (234)
T PF04445_consen   76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD  149 (234)
T ss_dssp             ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred             CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence            468999999999999999975  679999999987665544   3333322 2     479999999999864    247


Q ss_pred             CeEeEEEEeCCCCCCCC
Q 014711          302 GKLILVSIQCPNPDFNR  318 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~k~  318 (420)
                      .++|.||+   ||.|..
T Consensus       150 ~s~DVVY~---DPMFp~  163 (234)
T PF04445_consen  150 NSFDVVYF---DPMFPE  163 (234)
T ss_dssp             S--SEEEE-----S---
T ss_pred             CCCCEEEE---CCCCCC
Confidence            89999988   676544

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.42  E-value=0.51  Score=47.94  Aligned_cols=114  Identities=13%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC-hhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN-ATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D-a~~~~~~~~~~~~~~~d~i  307 (420)
                      .+..||.+|||. |..++.+|+......++++|.+++..+.+++..   +...+.....+ ....+....  ....+|.+
T Consensus       184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~--~~~~~D~v  258 (386)
T cd08283         184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELT--GGRGPDVC  258 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHc--CCCCCCEE
Confidence            467899999998 999999999976557999999999888877642   22212222221 222112221  23357776


Q ss_pred             EEeCC-C----CCCCCcchh--hhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          308 SIQCP-N----PDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       308 ~~~fp-d----p~~k~~~~k--~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +-... +    +|.+-..+.  .+=-....++.+.+.|+++|.++...
T Consensus       259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            44211 0    110000000  00001357788899999999998764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.36  E-value=1  Score=37.14  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=68.0

Q ss_pred             CCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCC
Q 014711          239 SGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF  316 (420)
Q Consensus       239 cG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~  316 (420)
                      ||.|.++..+++.  ..+..|+.+|.+++.++.+++.    +   +.++.+|+.+.. -+-...-...+.+++..++.. 
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~~-~l~~a~i~~a~~vv~~~~~d~-   74 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATDPE-VLERAGIEKADAVVILTDDDE-   74 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSHH-HHHHTTGGCESEEEEESSSHH-
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchhhh-HHhhcCccccCEEEEccCCHH-
Confidence            6778888888776  2234799999999988776543    3   578999998751 111112356788888754431 


Q ss_pred             CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          317 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       317 k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                                ..-.+....+.+.|...++...+.+.+.    +.|++.|..
T Consensus        75 ----------~n~~~~~~~r~~~~~~~ii~~~~~~~~~----~~l~~~g~d  111 (116)
T PF02254_consen   75 ----------ENLLIALLARELNPDIRIIARVNDPENA----ELLRQAGAD  111 (116)
T ss_dssp             ----------HHHHHHHHHHHHTTTSEEEEEESSHHHH----HHHHHTT-S
T ss_pred             ----------HHHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHCCcC
Confidence                      1134455667788999999998877763    345555544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.24  E-value=0.16  Score=48.92  Aligned_cols=133  Identities=16%  Similarity=0.062  Sum_probs=75.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC---------------------------C-Cc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---------------------------I-TN  281 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~---------------------------l-~n  281 (420)
                      .+.++||||||.--+-+.-|..+ -.+++..|.++.-.+..++.+...+                           + +.
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            35689999999965532222221 2469999999998887776543211                           0 11


Q ss_pred             E-EEEEcChhhhhhhhhcc---CCCeEeEEEEeCCCC-CCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-------
Q 014711          282 G-YFIATNATSTFRSIVAS---YPGKLILVSIQCPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-------  349 (420)
Q Consensus       282 v-~~~~~Da~~~~~~~~~~---~~~~~d~i~~~fpdp-~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-------  349 (420)
                      | +++.+|..+..  .+..   .+..+|.|...|.-. ..++     +-.....++.+.++|||||.|++..-       
T Consensus       135 Vk~Vv~cDV~~~~--pl~~~~~~p~~~D~v~s~fcLE~a~~d-----~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~  207 (256)
T PF01234_consen  135 VKQVVPCDVTQPN--PLDPPVVLPPKFDCVISSFCLESACKD-----LDEYRRALRNISSLLKPGGHLILAGVLGSTYYM  207 (256)
T ss_dssp             EEEEEE--TTSSS--TTTTS-SS-SSEEEEEEESSHHHH-SS-----HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE
T ss_pred             hceEEEeeccCCC--CCCccccCccchhhhhhhHHHHHHcCC-----HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE
Confidence            2 36667776541  1110   123599987765311 1111     12345789999999999999998631       


Q ss_pred             --c------HHHHHHHHHHHHHcCCceeE
Q 014711          350 --I------EEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       350 --~------~~~~~~~~~~l~~~g~~~~~  370 (420)
                        .      .--.+.+.+.+++.|+.+..
T Consensus       208 vG~~~F~~l~l~ee~v~~al~~aG~~i~~  236 (256)
T PF01234_consen  208 VGGHKFPCLPLNEEFVREALEEAGFDIED  236 (256)
T ss_dssp             ETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred             ECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence              0      00134577888888876543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=93.06  E-value=1.5  Score=42.94  Aligned_cols=124  Identities=19%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  312 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp  312 (420)
                      +++|+-||-|.+...+.+.. -..+.++|+++.+.+.-+.|..       ...++|+.++....++  . .+|.++..+|
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~--~-~~D~l~ggpP   70 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLP--K-DVDLLIGGPP   70 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHH--H-T-SEEEEE--
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------cccccccccccccccc--c-cceEEEeccC
Confidence            58999999999999988874 2368999999999888877753       7788999988544453  2 5999988765


Q ss_pred             -CCCCCCcc------hhhhhhHHHHHHHHHhhccCCeEEEEE-------eCcHHHHHHHHHHHHHcCCceeE
Q 014711          313 -NPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       313 -dp~~k~~~------~k~Rl~~~~~l~~i~~~LkpgG~l~~~-------td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                       .++.....      .+..|+ ..+++.+ +.++|-- |+++       ++....++.+++.|++.|+...+
T Consensus        71 CQ~fS~ag~~~~~~d~r~~L~-~~~~~~v-~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~  139 (335)
T PF00145_consen   71 CQGFSIAGKRKGFDDPRNSLF-FEFLRIV-KELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYNVQW  139 (335)
T ss_dssp             -TTTSTTSTHHCCCCHTTSHH-HHHHHHH-HHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred             CceEeccccccccccccchhh-HHHHHHH-hhccceE-EEecccceeeccccccccccccccccccceeehh
Confidence             33333321      111222 3455544 4567854 4455       12335678899999999976543

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=1.7  Score=41.49  Aligned_cols=113  Identities=10%  Similarity=0.093  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCC----CeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKD----LNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~----~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      +...+|+|.|+-.=+..|...+..    ..|+-||+|...++...+.+.+. .+  .+.-+++|...-+..    .+..-
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~-y~~l~v~~l~~~~~~~La~----~~~~~  153 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE-YPGLEVNALCGDYELALAE----LPRGG  153 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh-CCCCeEeehhhhHHHHHhc----ccCCC
Confidence            567999999999887777665444    78999999999887655544332 22  355667777654321    12222


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  352 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~  352 (420)
                      ..++++ +-.-.-+..+..+   ..||.++...|+||-+|.+-+|...
T Consensus       154 ~Rl~~f-lGStlGN~tp~e~---~~Fl~~l~~a~~pGd~~LlGvDl~k  197 (321)
T COG4301         154 RRLFVF-LGSTLGNLTPGEC---AVFLTQLRGALRPGDYFLLGVDLRK  197 (321)
T ss_pred             eEEEEE-ecccccCCChHHH---HHHHHHHHhcCCCcceEEEeccccC
Confidence            334332 2111111112112   3799999999999999999887644

>PRK11524 putative methyltransferase; Provisional

Probab=92.85  E-value=0.24  Score=48.44  Aligned_cols=45  Identities=18%  Similarity=0.200  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL  276 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~  276 (420)
                      ++.+|||-=||+|..+++..+.  +.+++|+|++++.++.|++++..
T Consensus       208 ~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        208 PGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            5899999999999999887766  78999999999999999999753

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=92.65  E-value=0.43  Score=45.75  Aligned_cols=123  Identities=15%  Similarity=0.121  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHh-----CCCCeEEEEeCCh--------------------------HHHHHHHHHhHHhCC
Q 014711          231 QPLVVDIGSGNGLFLLGMARK-----RKDLNFLGLEVNG--------------------------KLVTHCRDSLQLSGI  279 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~-----~P~~~viGiDis~--------------------------~~i~~A~~~~~~~~l  279 (420)
                      ...++|.||=.|..++.++..     .++.++++.|.-+                          ..++..+++..+.++
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            467999999999877655432     3677899998321                          134445555555554


Q ss_pred             --CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH---H
Q 014711          280 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV---M  354 (420)
Q Consensus       280 --~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~---~  354 (420)
                        .|++|+.+...+-++..   +...+..+++-. |-+  .+       ....|+.++..|.|||.++|  |....   .
T Consensus       155 ~~~~v~~vkG~F~dTLp~~---p~~~IAll~lD~-DlY--es-------T~~aLe~lyprl~~GGiIi~--DDY~~~gcr  219 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLPDA---PIERIALLHLDC-DLY--ES-------TKDALEFLYPRLSPGGIIIF--DDYGHPGCR  219 (248)
T ss_dssp             SSTTEEEEES-HHHHCCC----TT--EEEEEE----SH--HH-------HHHHHHHHGGGEEEEEEEEE--SSTTTHHHH
T ss_pred             CcccEEEECCcchhhhccC---CCccEEEEEEec-cch--HH-------HHHHHHHHHhhcCCCeEEEE--eCCCChHHH
Confidence              57999999997765321   244565555531 111  00       13788999999999999998  54332   3


Q ss_pred             HHHHHHHHHcCCce
Q 014711          355 LRMKQQFLEYGKGK  368 (420)
Q Consensus       355 ~~~~~~l~~~g~~~  368 (420)
                      +.+-+-+++++...
T Consensus       220 ~AvdeF~~~~gi~~  233 (248)
T PF05711_consen  220 KAVDEFRAEHGITD  233 (248)
T ss_dssp             HHHHHHHHHTT--S
T ss_pred             HHHHHHHHHcCCCC
Confidence            33444556776654

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=92.38  E-value=0.27  Score=50.26  Aligned_cols=54  Identities=28%  Similarity=0.417  Sum_probs=44.9

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEE
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIA  286 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~  286 (420)
                      ..+||||+|+|.+....++...+ .++++|+-..|...|++-.+++|.+ ++.++.
T Consensus        68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn  122 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVIN  122 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence            56999999999998888877644 5999999999999999999988864 455543

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.12  E-value=0.23  Score=46.70  Aligned_cols=117  Identities=15%  Similarity=0.237  Sum_probs=73.6

Q ss_pred             eeeeeeccccCCCccccccCCcccccc----ccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHH
Q 014711          196 AVWEFLKGRMLPGVSALDRAFPFDIDW----SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR  271 (420)
Q Consensus       196 a~le~l~g~~lPgv~aL~~~~p~~~~~----~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~  271 (420)
                      ..|++-+|...|-+.--.+...+..++    ...... .+.++||||.|--++--.+.-+.=.+.|+|.|+++.+++.|+
T Consensus        41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~-~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~  119 (292)
T COG3129          41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPG-KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAK  119 (292)
T ss_pred             eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCc-CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHH
Confidence            458888888777652111111111111    111111 467899999999988766666644789999999999999999


Q ss_pred             HHhHHh-CCCc-EEEEE-cChhhhhhhhhccCCCeEeEEEEeCCCCCC
Q 014711          272 DSLQLS-GITN-GYFIA-TNATSTFRSIVASYPGKLILVSIQCPNPDF  316 (420)
Q Consensus       272 ~~~~~~-~l~n-v~~~~-~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~  316 (420)
                      ..+..+ ++++ +++.+ -|-..+++.... ..+.||...+|  .|.+
T Consensus       120 ~ii~~N~~l~~~I~lr~qk~~~~if~giig-~nE~yd~tlCN--PPFh  164 (292)
T COG3129         120 AIISANPGLERAIRLRRQKDSDAIFNGIIG-KNERYDATLCN--PPFH  164 (292)
T ss_pred             HHHHcCcchhhheeEEeccCcccccccccc-ccceeeeEecC--CCcc
Confidence            998876 5654 55543 344344443331 35788988876  5543

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=91.72  E-value=0.81  Score=46.65  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHh---------------CCCCeEEEEeCChHHHHHHHHHhHH--------------hCCCc
Q 014711          231 QPLVVDIGSGNGLFLLGMARK---------------RKDLNFLGLEVNGKLVTHCRDSLQL--------------SGITN  281 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~---------------~P~~~viGiDis~~~i~~A~~~~~~--------------~~l~n  281 (420)
                      .-.|+|+|||+|..++.+...               -|+.+|+.-|.-..=....-+.+..              .+. +
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~-~  142 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH-R  142 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC-C
Confidence            457999999999776554221               2567777777653222222222111              010 1


Q ss_pred             EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCC--------cc---hhh----------------hhhH---HHHH
Q 014711          282 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR--------PE---HRW----------------RMVQ---RSLV  331 (420)
Q Consensus       282 v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~--------~~---~k~----------------Rl~~---~~~l  331 (420)
                      --|+.+=.-.+...+|  ++++++.++..+.-.|..+        .+   .|.                +..+   ..||
T Consensus       143 ~~f~~gvpGSFY~RLf--P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL  220 (386)
T PLN02668        143 SYFAAGVPGSFYRRLF--PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFL  220 (386)
T ss_pred             ceEEEecCcccccccc--CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHH
Confidence            1233322223323445  5888999877665444221        00   000                0111   4677


Q ss_pred             HHHHhhccCCeEEEEEe
Q 014711          332 EAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       332 ~~i~~~LkpgG~l~~~t  348 (420)
                      +.=++-|+|||++++..
T Consensus       221 ~~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        221 RARAQEMKRGGAMFLVC  237 (386)
T ss_pred             HHHHHHhccCcEEEEEE
Confidence            77788899999999874

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.22  E-value=0.65  Score=38.97  Aligned_cols=87  Identities=11%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE--cChhhhhhhhhccCCCeEeEEEEeCCCCCCC
Q 014711          240 GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLILVSIQCPNPDFN  317 (420)
Q Consensus       240 G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~--~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k  317 (420)
                      |-|..++.+|+... .+++++|.++..++.+++    .|...+ +-.  .|..+.+.+..  ....+|.++-.-..    
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~~~-~~~~~~~~~~~i~~~~--~~~~~d~vid~~g~----   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGADHV-IDYSDDDFVEQIRELT--GGRGVDVVIDCVGS----   68 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTESEE-EETTTSSHHHHHHHHT--TTSSEEEEEESSSS----
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccccc-cccccccccccccccc--ccccceEEEEecCc----
Confidence            46889999999986 999999999998887755    342221 111  12222223332  23578988665222    


Q ss_pred             CcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          318 RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       318 ~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                                +..++...++|+|+|++.+..
T Consensus        69 ----------~~~~~~~~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   69 ----------GDTLQEAIKLLRPGGRIVVVG   89 (130)
T ss_dssp             ----------HHHHHHHHHHEEEEEEEEEES
T ss_pred             ----------HHHHHHHHHHhccCCEEEEEE
Confidence                      378899999999999999864

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=91.07  E-value=0.38  Score=44.35  Aligned_cols=41  Identities=15%  Similarity=0.327  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHH
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD  272 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~  272 (420)
                      ++.+|||-=||+|..+.+..+.  +.+++|+|+++..++.|++
T Consensus       191 ~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  191 PGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             cceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence            5899999999999998887766  6789999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=90.96  E-value=0.59  Score=44.21  Aligned_cols=46  Identities=15%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS  277 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~  277 (420)
                      .+.+|||-=||+|..+++..+.  +.+++|+|+++...+.|.+++.+.
T Consensus       163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        163 PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence            5789999999999999887766  789999999999999999988653

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.36  E-value=1  Score=39.56  Aligned_cols=62  Identities=27%  Similarity=0.296  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~  292 (420)
                      +....+|+|+|.|.+.+..|+.. -.+-+|+|+++-.+..++-.+-+.|.. ..+|.+-|+-..
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~  134 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV  134 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence            35679999999999999988773 457899999999999999888888864 588888888665

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=89.60  E-value=1.2  Score=44.60  Aligned_cols=90  Identities=14%  Similarity=0.190  Sum_probs=60.7

Q ss_pred             CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..|+=+|+| -|..++.+|+..- .+|+++|+|++-.+.|++.    |..  .++.. |.... .. .   .+.+|.++
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~-~~-~---~~~~d~ii  234 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GAD--HVINSSDSDAL-EA-V---KEIADAII  234 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhh-HH-h---HhhCcEEE
Confidence            5566666655 6778899999764 9999999999988888664    322  22222 22221 11 1   22388887


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ..-+ +              .-+....+.|++||++.+.
T Consensus       235 ~tv~-~--------------~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         235 DTVG-P--------------ATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             ECCC-h--------------hhHHHHHHHHhcCCEEEEE
Confidence            7644 3              4667888999999999885

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=89.45  E-value=3.5  Score=39.53  Aligned_cols=107  Identities=15%  Similarity=0.132  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-----CCC-cEEEEEcChhhhhhhhhccCCCe-
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----GIT-NGYFIATNATSTFRSIVASYPGK-  303 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-----~l~-nv~~~~~Da~~~~~~~~~~~~~~-  303 (420)
                      ...|||+|.|+|--++..|.. ...+|+--|...... ....+...+     ++. ++.....+..+.....+  .... 
T Consensus        87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~-~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~--~~~~~  162 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVE-NLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF--RLPNP  162 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHH-HHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh--ccCCc
Confidence            467999999999777766664 467788777654333 222222221     111 23333322222211111  1223 


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +|.|...  |++....+.      ..++..++..|..++.+++.+.
T Consensus       163 ~Dlilas--Dvvy~~~~~------e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  163 FDLILAS--DVVYEEESF------EGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             ccEEEEe--eeeecCCcc------hhHHHHHHHHHhcCCeEEEEEe
Confidence            8888765  666544433      3788888999999998888774

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=88.85  E-value=1.5  Score=38.59  Aligned_cols=103  Identities=15%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  311 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f  311 (420)
                      .-|||+|-|+|..=-+|-+.+|+..++.+|.--..--.       .-.+.=.++.+|+.+.++. .+........++..+
T Consensus        30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~-------~~P~~~~~ilGdi~~tl~~-~~~~g~~a~laHaD~  101 (160)
T PF12692_consen   30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPS-------STPPEEDLILGDIRETLPA-LARFGAGAALAHADI  101 (160)
T ss_dssp             S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GG-------G---GGGEEES-HHHHHHH-HHHH-S-EEEEEE--
T ss_pred             CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCC-------CCCchHheeeccHHHHhHH-HHhcCCceEEEEeec
Confidence            56999999999999999999999999999964221100       0111235889999988765 211244555555542


Q ss_pred             CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      -...   + .+.-.+...+-..+..+|.|||.++-
T Consensus       102 G~g~---~-~~d~a~a~~lspli~~~la~gGi~vS  132 (160)
T PF12692_consen  102 GTGD---K-EKDDATAAWLSPLIAPVLAPGGIMVS  132 (160)
T ss_dssp             --S----H-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCC---c-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            1111   1 11111122344567889999998863

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=88.81  E-value=2.3  Score=40.83  Aligned_cols=129  Identities=15%  Similarity=0.148  Sum_probs=81.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCC------------CeEEEEeCChHHHHHHHH--------------------------
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKD------------LNFLGLEVNGKLVTHCRD--------------------------  272 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~------------~~viGiDis~~~i~~A~~--------------------------  272 (420)
                      ...|+|+|.|+|.....+-+.+++            .+++.++.++-.-.....                          
T Consensus        59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~  138 (252)
T COG4121          59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA  138 (252)
T ss_pred             ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence            578999999999987776665443            358888877543322221                          


Q ss_pred             HhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014711          273 SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  352 (420)
Q Consensus       273 ~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~  352 (420)
                      ++...|.-++.++.+|+...++..-..-+ .+|..+..-..|   .+.+  .+-+++++..+++..+|||++.-  .  .
T Consensus       139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~-~~dAwflDgFsP---~kNP--~mW~~e~l~~~a~~~~~~~~l~t--~--s  208 (252)
T COG4121         139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRP-GTDAWFLDGFRP---VKNP--EMWEDELLNLMARIPYRDPTLAT--F--A  208 (252)
T ss_pred             HhhhcchheeeeeeeehhhcCCccccccc-CccEEecCCccc---cCCh--hhccHHHHHHHHhhcCCCCceec--h--H
Confidence            11112445688899999877543211011 577776542222   2222  23356999999999999999863  2  2


Q ss_pred             HHHHHHHHHHHcCCcee
Q 014711          353 VMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       353 ~~~~~~~~l~~~g~~~~  369 (420)
                      ..-.+++-+.+.|+...
T Consensus       209 sA~~vRr~L~~aGF~v~  225 (252)
T COG4121         209 AAIAVRRRLEQAGFTVE  225 (252)
T ss_pred             HHHHHHHHHHHcCceee
Confidence            34567888999998753

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=88.32  E-value=0.71  Score=46.07  Aligned_cols=110  Identities=16%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+||+|.|.|.-+.++-..+|+. .++-+|.|+..-+..-.-++.-..+....-..|...- ..-++ +...++.+++
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d-Rl~lp-~ad~ytl~i~  191 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED-RLSLP-AADLYTLAIV  191 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh-ccCCC-ccceeehhhh
Confidence            4569999999999998888889987 4777777775444433332221111111111111111 00122 3456777765


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .  |....+...+  -+ ...++.+...+.|||.|++.
T Consensus       192 ~--~eLl~d~~ek--~i-~~~ie~lw~l~~~gg~lViv  224 (484)
T COG5459         192 L--DELLPDGNEK--PI-QVNIERLWNLLAPGGHLVIV  224 (484)
T ss_pred             h--hhhccccCcc--hH-HHHHHHHHHhccCCCeEEEE
Confidence            4  2211111111  01 14889999999999999886

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=88.10  E-value=2.5  Score=42.57  Aligned_cols=98  Identities=12%  Similarity=0.093  Sum_probs=65.5

Q ss_pred             CEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEEE
Q 014711          232 PLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       232 ~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ..++=+|||. |..++.+|+......++.+|.++..++.|++....   .-+..... +........-  ...-+|.++-
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---~~~~~~~~~~~~~~~~~~t--~g~g~D~vie  244 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---DVVVNPSEDDAGAEILELT--GGRGADVVIE  244 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---eEeecCccccHHHHHHHHh--CCCCCCEEEE
Confidence            3899999997 67778889999999999999999999999874321   11111111 2211111111  1235788765


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .--.              +..+.++.+.++|||.+.+..
T Consensus       245 ~~G~--------------~~~~~~ai~~~r~gG~v~~vG  269 (350)
T COG1063         245 AVGS--------------PPALDQALEALRPGGTVVVVG  269 (350)
T ss_pred             CCCC--------------HHHHHHHHHHhcCCCEEEEEe
Confidence            4222              257889999999999998863

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=87.74  E-value=4.7  Score=43.78  Aligned_cols=95  Identities=15%  Similarity=0.101  Sum_probs=63.6

Q ss_pred             CCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEEEeCCCCC
Q 014711          239 SGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPD  315 (420)
Q Consensus       239 cG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~~~fpdp~  315 (420)
                      ||.|.++..+++.  ..+..|+.+|.+++.++.+++    .   +...+.+|+.+.  +.+.. .-...|.+.+..+|+.
T Consensus       406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~--~~L~~agi~~A~~vv~~~~d~~  476 (601)
T PRK03659        406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQL--ELLRAAGAEKAEAIVITCNEPE  476 (601)
T ss_pred             ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCH--HHHHhcCCccCCEEEEEeCCHH
Confidence            6777888777765  346789999999999887754    2   356889999874  22211 2245677777766652


Q ss_pred             CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          316 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       316 ~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                                .+ ..+-...+.+.|.-.++.++.++..
T Consensus       477 ----------~n-~~i~~~~r~~~p~~~IiaRa~~~~~  503 (601)
T PRK03659        477 ----------DT-MKIVELCQQHFPHLHILARARGRVE  503 (601)
T ss_pred             ----------HH-HHHHHHHHHHCCCCeEEEEeCCHHH
Confidence                      11 2334456678899999988866554

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=87.70  E-value=4.7  Score=39.15  Aligned_cols=125  Identities=10%  Similarity=0.075  Sum_probs=87.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|+=+| -.-.+++++|-..-...+.-+||++..+..-.+-+++.|++|+..+.-|+.+-+++.+   ...||.+..
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~---~~kFDvfiT  227 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL---KRKFDVFIT  227 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH---HhhCCeeec
Confidence            467788888 5555666666665456899999999999999999999999999999999988766544   467888755


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCC---eEEEEEeCcHHH--HHHHHH-HHHHcCCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFLQSDIEEV--MLRMKQ-QFLEYGKG  367 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg---G~l~~~td~~~~--~~~~~~-~l~~~g~~  367 (420)
                         ||----  ..    -+.|+.+=...||--   |+|.+..-..+.  +.++++ +..+.|+-
T Consensus       228 ---DPpeTi--~a----lk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV  282 (354)
T COG1568         228 ---DPPETI--KA----LKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV  282 (354)
T ss_pred             ---CchhhH--HH----HHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence               442000  00    035777667778766   899987543333  334666 45666643

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=86.82  E-value=0.59  Score=47.69  Aligned_cols=62  Identities=18%  Similarity=0.270  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC--CcEEEEEcChhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTF  293 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l--~nv~~~~~Da~~~~  293 (420)
                      .+..|.|+-||-|-+.+.+++.  ++.|++-|.++++++....++..+.+  .++..+..|+..++
T Consensus       249 ~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  249 PGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             CcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            4789999999999999999988  59999999999999999999877665  36999999999886

>PHA01634 hypothetical protein

Probab=86.67  E-value=1.8  Score=37.12  Aligned_cols=47  Identities=15%  Similarity=0.041  Sum_probs=41.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS  277 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~  277 (420)
                      .+.+|+|||.+-|..++.++.+. ...|+++|.++...+..++++...
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhh
Confidence            47899999999999999998774 568999999999999998887654

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=85.71  E-value=1.5  Score=43.22  Aligned_cols=57  Identities=12%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             EEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChh
Q 014711          234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNAT  290 (420)
Q Consensus       234 vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~  290 (420)
                      =+|||+|.-++--.+..+.-++.++++|++...+..|.++..+++++ .+..++.+..
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~  163 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQ  163 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecch
Confidence            48999999888777765555799999999999999999999988875 4667766553

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=85.09  E-value=15  Score=34.36  Aligned_cols=76  Identities=13%  Similarity=0.239  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCCccH--HHHH--HHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChh-hhhhhhhccCCCe
Q 014711          230 AQPLVVDIGSGNGL--FLLG--MARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNAT-STFRSIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~--~~~~--lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~-~~~~~~~~~~~~~  303 (420)
                      +..+++|+.|+-|.  .++.  .|.++.+.+++.|-..+..+...++.+...++.+ +.|+.+|.. ++++.+     ..
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-----~~  115 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-----KG  115 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-----cC
Confidence            56889999777543  3444  4556888999999999888878888877778766 699999854 443321     24


Q ss_pred             EeEEEEe
Q 014711          304 LILVSIQ  310 (420)
Q Consensus       304 ~d~i~~~  310 (420)
                      +|.+.+.
T Consensus       116 iDF~vVD  122 (218)
T PF07279_consen  116 IDFVVVD  122 (218)
T ss_pred             CCEEEEe
Confidence            7777664

The function of this family is unknown.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=85.03  E-value=5.9  Score=39.69  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=16.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK  251 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~  251 (420)
                      ..-+|+|+||.+|..++.+...
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~   37 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSN   37 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHH
T ss_pred             CceEEEecCCCCCccHHHHHHH
Confidence            3568999999999998877653

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=83.67  E-value=2  Score=41.52  Aligned_cols=63  Identities=10%  Similarity=0.098  Sum_probs=44.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-----CCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTF  293 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-----P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~  293 (420)
                      +...++|+|||.|.++..+++..     +...++.||...... ++-.+...... ..+.=++.|+.++.
T Consensus        18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen   18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD   86 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence            35789999999999999999987     567999999876544 23333332221 24666777887763

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=83.19  E-value=12  Score=36.32  Aligned_cols=95  Identities=12%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..+|..||| .|..++.+|+.. +.+++.++.++...+.+++    .+...+...+. +....+ ...  ....+|.++
T Consensus       166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~--~~~~~D~vi  237 (338)
T cd08254         166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG--LGGGFDVIF  237 (338)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh--cCCCceEEE
Confidence            5567778887 488888899886 5779999999988776643    34432211111 111111 111  345688765


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      -. ...             ...++.+.+.|+++|.++..
T Consensus       238 d~-~g~-------------~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         238 DF-VGT-------------QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             EC-CCC-------------HHHHHHHHHHhhcCCEEEEE
Confidence            42 111             25778889999999999865

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=83.11  E-value=12  Score=40.19  Aligned_cols=106  Identities=14%  Similarity=0.084  Sum_probs=67.8

Q ss_pred             CCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEEEeCCCCC
Q 014711          239 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPD  315 (420)
Q Consensus       239 cG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~~~fpdp~  315 (420)
                      ||.|.++..+++..  .+..++.+|.+++.++.+++    .   +...+++|+.+-  +.+.. .-+..|.+.+..+|..
T Consensus       423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~--~~L~~a~i~~a~~viv~~~~~~  493 (558)
T PRK10669        423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANE--EIMQLAHLDCARWLLLTIPNGY  493 (558)
T ss_pred             ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCH--HHHHhcCccccCEEEEEcCChH
Confidence            67777888887762  35789999999998877753    2   467899999874  22210 2246777776655542


Q ss_pred             CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          316 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       316 ~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                                .+ ..+-...+.+.|+-.++.+.++++.    .+.+++.|...
T Consensus       494 ----------~~-~~iv~~~~~~~~~~~iiar~~~~~~----~~~l~~~Gad~  531 (558)
T PRK10669        494 ----------EA-GEIVASAREKRPDIEIIARAHYDDE----VAYITERGANQ  531 (558)
T ss_pred             ----------HH-HHHHHHHHHHCCCCeEEEEECCHHH----HHHHHHcCCCE
Confidence                      11 2233345666788888888866543    33456667554

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=83.08  E-value=12  Score=37.22  Aligned_cols=121  Identities=14%  Similarity=0.113  Sum_probs=73.6

Q ss_pred             EEEEcCCccHHHHHHHHhCCCCe-EEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014711          234 VVDIGSGNGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  312 (420)
Q Consensus       234 vLDIGcG~G~~~~~lA~~~P~~~-viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp  312 (420)
                      |+|+-||-|.+...+-+.  ..+ +.++|+++.+++.-+.|..     + .++++|+.++....+    ..+|.++..+|
T Consensus         1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~----~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDI----PDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhC----CCcCEEEecCC
Confidence            589999999999888766  344 5679999999888777642     3 456788888742222    24788877654


Q ss_pred             -CCCCCCcc------hhhhhhHHHHHHHHHhhccCCeEEEEEe-------CcHHHHHHHHHHHHHcCCcee
Q 014711          313 -NPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       313 -dp~~k~~~------~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-------d~~~~~~~~~~~l~~~g~~~~  369 (420)
                       .++.....      .+..++ ..+++.+ +.++|. .++++-       +....+..+++.|+..|+...
T Consensus        69 Cq~fS~ag~~~~~~d~r~~L~-~~~~r~i-~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~  136 (315)
T TIGR00675        69 CQPFSIAGKRKGFEDTRGTLF-FEIVRIL-KEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVY  136 (315)
T ss_pred             CcccchhcccCCCCCchhhHH-HHHHHHH-hhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEE
Confidence             33322211      111222 2344333 445775 444541       112345677888888887653

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=82.25  E-value=1.7  Score=41.61  Aligned_cols=46  Identities=22%  Similarity=0.315  Sum_probs=35.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC----C----CCeEEEEeCChHHHHHHHHHhHH
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR----K----DLNFLGLEVNGKLVTHCRDSLQL  276 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~----P----~~~viGiDis~~~i~~A~~~~~~  276 (420)
                      ...|+|+|.|+|.++..+.+..    |    ..+|+-||+|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            3689999999999998887753    3    35899999999998887777654

; PDB: 4F3N_A 1ZKD_B.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=81.06  E-value=3.8  Score=41.27  Aligned_cols=53  Identities=23%  Similarity=0.379  Sum_probs=40.5

Q ss_pred             cccCCCCCCEEEEEcCCccHHHHHHHHh----CC----CCeEEEEeCChHHHHHHHHHhHH
Q 014711          224 AAYHDPAQPLVVDIGSGNGLFLLGMARK----RK----DLNFLGLEVNGKLVTHCRDSLQL  276 (420)
Q Consensus       224 ~~f~~~~~~~vLDIGcG~G~~~~~lA~~----~P----~~~viGiDis~~~i~~A~~~~~~  276 (420)
                      +.++.|.+-.++|||.|.|.++..+.+.    +|    ...|.-||.|++..++=+++++.
T Consensus        71 q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          71 QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            3455555567999999999999887664    45    67899999999987766665543

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=80.70  E-value=3  Score=41.12  Aligned_cols=38  Identities=16%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHH
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTH  269 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~  269 (420)
                      ..+.||==|||.|.++..||...+.+  -|=|.|--|+-.
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~~~--qGNEfSy~Mli~  187 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGFKC--QGNEFSYFMLIC  187 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcccc--cccHHHHHHHHH
Confidence            36889999999999999999996554  466888777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
1vpe_A	398	Crystallographic Analysis Of Phosphoglycerate Kinas		2e-21
13pk_A	415	Ternary Complex Of Phosphoglycerate Kinase From Try		3e-21
3uwd_A	394	Crystal Structure Of Phosphoglycerate Kinase From B		8e-20
1v6s_A	390	Crystal Structure Of Phosphoglycerate Kinase From T		2e-17
2ie8_A	390	Crystal Structure Of Thermus Caldophilus Phosphogly		2e-17
1php_A	394	Structure Of The Adp Complex Of The 3-Phosphoglycer		3e-17
2zgv_A	420	Crystal Structure Of Human Phosphoglycerate Kinase		7e-17
2wzb_A	416	The Catalytically Active Fully Closed Conformation		7e-17
2xe6_A	417	The Complete Reaction Cycle Of Human Phosphoglycera		7e-17
2y3i_A	416	The Structure Of The Fully Closed Conformation Of H		8e-17
1vjc_A	416	Structure Of Pig Muscle Pgk Complexed With Mgatp Le		9e-17
1fw8_A	416	Circularly Permuted Phosphoglycerate Kinase From Ye		1e-16
1qpg_A	415	3-Phosphoglycerate Kinase, Mutation R65q Length = 4		1e-16
3oz7_A	417	Crystal Structure Of 3-Phosphopglycerate Kinase Of		2e-16
1kf0_A	416	Crystal Structure Of Pig Muscle Phosphoglycerate Ki		2e-16
2x14_A	416	The Catalytically Active Fully Closed Conformation		3e-16
2wzd_A	417	The Catalytically Active Fully Closed Conformation		3e-16
4dg5_A	403	Crystal Structure Of Staphylococcal Phosphoglycerat		6e-16
1hdi_A	413	Pig Muscle 3-Phosphoglycerate Kinase Complexed With		8e-16
3pgk_A	416	The Structure Of Yeast Phosphoglycerate Kinase At 0		2e-15
3oza_A	424	Crystal Structure Of Plasmodium Falciparum 3-Phosph		4e-15
1ltk_A	425	Crystal Structure Of Phosphoglycerate Kinase From P		4e-15
3q3v_A	403	Crystal Structure Of Phosphoglycerate Kinase From C		5e-15
2p9q_A	416	Crystal Structure Of Phosphoglycerate Kinase-2 Leng		2e-14
4fey_A	395	An X-Ray Structure Of A Putative Phosphogylcerate K		2e-09
4ehj_A	392	An X-Ray Structure Of A Putative Phosphogylcerate K		2e-09
3ckk_A	235	Crystal Structure Of Human Methyltransferase-Like P		4e-07
3dxx_A	218	Crystal Structure Of Ectrmb Length = 218		1e-06
1yzh_A	214	Crystal Structure Of The Conserved Hypothetical Pro		4e-06
2fca_A	213	The Structure Of Bstrmb Length = 213		5e-06
1zmr_A	387	Crystal Structure Of The E. Coli Phosphoglycerate K		1e-05

>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From The Hyperthermophilic Bacterium Thermotoga Maritima Length = 398

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           EKPY  ++GG  + +K   +  L  + D ++  G M F  + ALG  V    VE+   D 
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
           A +L++ A++K + I+ P D    +   P   +  +    GIP+GW  +DIGP ++E   
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
             ++  K V+W GP+       ++ G  ++   +  +++      V G  +  A+ K   
Sbjct: 305 QKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNK--- 361
Query: 184 SIFGL-----NMVESGSAVWEFLKGRMLPGVSAL 212
             FGL     ++   G A  EFL+G+ LPG++++
Sbjct: 362 --FGLEDKFSHVSTGGGASLEFLEGKELPGIASM 393

>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma Brucei Length = 415

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 2/209 (0%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P  AI+GG  + +K   L  +  R D L+  G M++  + A G  +     E+   + A
Sbjct: 205 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 264
Query: 67  SDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
             L++ A D+ + ++ P D  C T+    +   I     IP+G   +DIGP+++E+   T
Sbjct: 265 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 324
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
           I KCK  IW GP+       YS G   +   + + +     +++IG     + A++S   
Sbjct: 325 IGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEA 384
Query: 186 FGLNMVES-GSAVWEFLKGRMLPGVSALD 213
             ++ V + G A  E L+G+ LPGV+ LD
Sbjct: 385 KRMSHVSTGGGASLELLEGKTLPGVTVLD 413

>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus Anthracis Length = 394

Iteration: 1
 Score = 94.7 bits (234), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 3/209 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+AAIIGG  + +K   +  L  + D LI  G +++  + ALG  +   L E    + 
Sbjct: 186 ERPFAAIIGGAKVKDKIGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSLCEDDKIEL 245
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A +  Q A++K +    P D   T +       +I     IP  WE VDIGP++ E    
Sbjct: 246 AKEFXQLAKEKGVNFYXPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYAD 305
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            I   K V+W GP      + ++ G +K  G     ++GT +V + G  +  A+ K   +
Sbjct: 306 VIKNSKLVVWNGPXGVFEXTPFAEG-TKAVGQALADAEGTYSV-IGGGDSAAAVEKFGXA 363
Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALD 213
               ++   G A  EF +G+ LPGV  L+
Sbjct: 364 DKXSHISTGGGASLEFXEGKELPGVVCLN 392

>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus Thermophilus Hb8 Length = 390

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+   D 
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A DL+  A    + +  P+D     +I    +  +FP+  IP  +  +DIGP++ E    
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS-S 183
            +   + V W GP+       +  G +   G      +G   V V G  +  A+ ++   
Sbjct: 303 ALEGARTVFWNGPMGVFEVPPFDEG-TLAVGQAIAALEGAFTV-VGGGDSVAAVNRLGLK 360
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
             FG ++   G A  EFL+   LPG+  L+
Sbjct: 361 ERFG-HVSTGGGASLEFLEKGTLPGLEVLE 389

>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate Kinase In The Open Conformation Length = 390

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+   D 
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A DL+  A    + +  P+D     +I    +  +FP+  IP  +  +DIGP++ E    
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS-S 183
            +   + V W GP+       +  G +   G      +G   V V G  +  A+ ++   
Sbjct: 303 ALEGARTVFWNGPMGVFEVPPFDEG-TLAVGQAIAALEGAFTV-VGGGDSVAAVNRLGLK 360
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
             FG ++   G A  EFL+   LPG+  L+
Sbjct: 361 ERFG-HVSTGGGASLEFLEKGTLPGLEVLE 389

>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus At 1.65 Angstroms Length = 394

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 3/209 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  V   L+E+   + 
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A   ++ A++K +    P D     +  +    ++ P   IP  W  +DIGP++ E    
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            I + K V+W GP+       +++G +K        +  T +V + G  +  A+ K   +
Sbjct: 306 VIRESKLVVWNGPMGVFEMDAFAHG-TKAIAEALAEALDTYSV-IGGGDSAAAVEKFGLA 363
Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALD 213
               ++   G A  EF++G+ LPGV AL+
Sbjct: 364 DKMDHISTGGGASLEFMEGKQLPGVVALE 392

>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound To D-Adp Length = 420

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 208 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 267
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 268 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 327
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 328 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 387
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 388 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 417

>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp, 3pg And Magnesium Trifluoride Length = 416

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 324 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413

>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate Kinase: The Open Binary Complex With 3pg Length = 417

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 325 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 384
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 385 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 414

>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium Tetrafluoride Length = 416

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 325 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 384
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 385 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 414

>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp Length = 416

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++  + 
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGSK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
           +  + + K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 324 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413

>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast: Pgk P72 Length = 416

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 5/210 (2%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
           +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   + 
Sbjct: 133 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 192
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
              L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +   
Sbjct: 193 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 252
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
           +T+ K K ++W GP       +++ G   L   + K S    N  +IG      +AK   
Sbjct: 253 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKYG 311
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
               ++ V + G A  E L+G+ LPGV+ L
Sbjct: 312 VTDKISHVSTGGGASLELLEGKELPGVAFL 341

>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q Length = 415

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 5/210 (2%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
           +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   + 
Sbjct: 203 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 262
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
              L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +   
Sbjct: 263 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 322
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
           +T+ K K ++W GP       +++ G   L   + K S    N  +IG      +AK   
Sbjct: 323 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKYG 381
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
               ++ V + G A  E L+G+ LPGV+ L
Sbjct: 382 VTDKISHVSTGGGASLELLEGKELPGVAFL 411

>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of Plasmodium Falciparum Length = 417

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 5/211 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D +I  G M++     L  + +   L ++  + 
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS--HGIPDGWEPVDIGPRSVEEI 122
              ++++ A+ K++ I  P DF        N    F +   GIPD W  +D GP+S+E  
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              I   K VIW GP        ++ G+ +   ++ +V++    +T++G     ++ +  
Sbjct: 326 KDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 384
Query: 183 SSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
           +    ++ V + G A  E L+G+ LPGV AL
Sbjct: 385 NKKNEISHVSTGGGASLELLEGKELPGVLAL 415

>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase Ternary Complex With Amp-Pcp And 3pg Length = 416

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              +L+  A    + I  P DF        H    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKNLMSKAEKNGVKITLPVDFVTADKFDEHAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
           +  + + K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 324 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413

>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Amp-Pcp And 3pg Length = 416

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +    ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 324 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413

>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Adp, 3pg And Aluminium Trifluoride Length = 417

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +    ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 205 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 325 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 384
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 385 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 414

>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate Kinase Length = 403

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 10/211 (4%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           KP  AI+GG  + +K   +  L +  D +I  G M++  + A G  +   L+E+   D A
Sbjct: 199 KPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFA 258
Query: 67  SDLIQFARDKHITILYPKDFWCTK-IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
            DL++   DK   I+ P D    K   +  ++ + PS  IP   E +DIGP +V+     
Sbjct: 259 KDLLEKHGDK---IVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADE 315
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVI--GSMACKAIAKVSS 183
           +     V+W GP+      ++SN A    G+   ++     +T+I  G  A  AI+    
Sbjct: 316 LEGAHTVVWNGPMGVF---EFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFE 372
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214
           + F  ++   G A  E+L+G+ LPG+ A++ 
Sbjct: 373 NDF-THISTGGGASLEYLEGKELPGIKAINN 402

>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg And Mgadp Length = 413

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 5/211 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS---HGIPDGWEPVDIGPRSVEE 121
              +L+  A    + I  P DF  T      Q +I  +    GIP GW  +D GP+S  +
Sbjct: 261 IVKNLMSKAAANGVKITLPVDF-VTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAK 319
Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
            +  + + K+++W GPV       ++ G   L   + K +   C   + G       AK 
Sbjct: 320 YSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 379
Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           ++     ++   G A  E L+G++LPGV AL
Sbjct: 380 NTEDNVSHVSTGGGASLELLEGKVLPGVDAL 410

>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm Resolution Length = 416

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 5/210 (2%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
           +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K     
Sbjct: 204 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAVGPE 263
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
            + L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +   
Sbjct: 264 IAKLMEKAKAKGVEVVLPVDFIIADAFSASANTKTVTDKEGIPAGWQGLDNGPESRKLFA 323
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
           +T+ K   ++W GP       +++ G   L   + K S    N  +IG      +AK   
Sbjct: 324 ATVAKATVILWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKYG 382
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
               ++ V + G A  E L+G+ LPGV+ L
Sbjct: 383 VTDKISHVSTGGGASLELLEGKELPGVAFL 412

>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum 3-Phosphoglycerate Kinase Length = 424

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 5/211 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D  I  G  ++     L    +   L ++  + 
Sbjct: 212 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 271
Query: 65  AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              ++ + A+ K++ I  P DF       ++ N   +    GIPD W  +D GP+S+E  
Sbjct: 272 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 331
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              I   K VIW GP        ++ G+ +   ++ +V++    +T++G     ++ +  
Sbjct: 332 KDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 390
Query: 183 SSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
           +    ++ V + G A  E L+G+ LPGV AL
Sbjct: 391 NKKNEISHVSTGGGASLELLEGKELPGVLAL 421

>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Plasmodium Falciparum, In The Open Conformation Length = 425

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 5/211 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D  I  G  ++     L    +   L ++  + 
Sbjct: 213 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 272
Query: 65  AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              ++ + A+ K++ I  P DF       ++ N   +    GIPD W  +D GP+S+E  
Sbjct: 273 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 332
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              I   K VIW GP        ++ G+ +   ++ +V++    +T++G     ++ +  
Sbjct: 333 KDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 391
Query: 183 SSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
           +    ++ V + G A  E L+G+ LPGV AL
Sbjct: 392 NKKNEISHVSTGGGASLELLEGKELPGVLAL 422

>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Campylobacter Jejuni. Length = 403

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 4/207 (1%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P+ A++GG  +  K  AL  L  + D LI  G  +F  + ALG  +   L+E+   + A
Sbjct: 194 RPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGXAFTFLKALGYDIGNSLLEEELLEEA 253
Query: 67  SDLIQFARDKHITILYPKDFWCTKIHHPNQVEIF-PSHGIPDGWEPVDIGPRSVEEITST 125
           + ++   ++  + I  P D         +    F P+  IP+GW  +DIGP SV      
Sbjct: 254 NKILTKGKNLGVKIYLPVDVVAAPACSQDVPXKFVPAQEIPNGWXGLDIGPASVRLFKEV 313
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
           I+  + + W GP       ++S G+ K +     +S+G     V G      +A+   + 
Sbjct: 314 ISDAQTIWWNGPXGVFEIDKFSKGSIKXSHY---ISEGHATSVVGGGDTADVVARAGDAD 370
Query: 186 FGLNMVESGSAVWEFLKGRMLPGVSAL 212
               +   G A  E ++G+ LPGV AL
Sbjct: 371 EXTFISTGGGASLELIEGKELPGVKAL 397

>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Length = 416

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 7/212 (3%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   +  +  + + +I  G M++  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGAT 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN----QVEIFPSHGIPDGWEPVDIGPRSVE 120
              ++++ A    + I++P DF        N    Q  I    GIP GW  +D GP S++
Sbjct: 264 IVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATI--ESGIPSGWMGLDCGPESIK 321
Query: 121 EITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK 180
                + + K ++W GP+       ++ G   L   + K +   C   + G       AK
Sbjct: 322 INAQIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVKATSNGCVTIIGGGDTATCCAK 381
Query: 181 VSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
             +     ++   G A  E L+G++LPGV AL
Sbjct: 382 WGTEDKVSHVSTGGGASLELLEGKILPGVEAL 413

>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase With Bound Adp From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 395

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 16/214 (7%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP AAI+GG  +  K + L+ L  + + LI  G ++   + A G  V   L E+     
Sbjct: 185 KKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 244
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFP--SHGIPDGWEPVDIGPRSVEEIT 123
           A++++  A+   + I  P D    K    N   I    S  + D    +DIGP S + I 
Sbjct: 245 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEM-ILDIGPESQKIIA 303
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
             +     ++W GPV       ++ G   L+     ++Q        G     AI K   
Sbjct: 304 ELLKSANTILWNGPVGVFEFDNFAEGTKALS---LAIAQSHAFSVAGGGDTIAAIEK--- 357
Query: 184 SIFGLN-----MVESGSAVWEFLKGRMLPGVSAL 212
             FG+      +  +G A  EFL+G+ LP +  L
Sbjct: 358 --FGIKDQVSYISTAGGAFLEFLEGKKLPAIEIL 389

>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 392

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 14/213 (6%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP AAI+GG  +  K + L+ L  + + LI  G ++   + A G  V   L E+     
Sbjct: 182 KKPXAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 241
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A++++  A+   + I  P D    K    N Q  I     +      +DIGP S + I  
Sbjct: 242 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEXILDIGPESQKIIAE 301
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +     ++W GPV       ++ G   L+     ++Q        G     AI K    
Sbjct: 302 LLKSANTILWNGPVGVFEFDNFAEGTKALS---LAIAQSHAFSVAGGGDTIAAIEK---- 354
Query: 185 IFGLN-----MVESGSAVWEFLKGRMLPGVSAL 212
            FG+      +  +G A  EFL+G+ LP +  L
Sbjct: 355 -FGIKDQVSYISTAGGAFLEFLEGKKLPAIEIL 386

>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein 1 Length = 235

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 30/186 (16%)
Query: 217 PFDIDWSAAY------------HD----------PAQPLVVDIGSGNGLFLLGMARKRKD 254
           P ++DWS  Y            HD           AQ    DIG G G  L+ ++    D
Sbjct: 11  PEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPD 70
Query: 255 LNFLGLEVNGKLVTHCRDSLQL------SGITNGYFIATNATSTFRSIVASYPGKLILVS 308
              LGLE+  K+  + +D ++        G  N   + +NA     +    Y G+L  + 
Sbjct: 71  TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKGQLTKMF 128
Query: 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 368
              P+P F R +H+WR++  +L+   + +L   G V+  +D+ E+   M   F E+   +
Sbjct: 129 FLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE 188
Query: 369 LVLVQD 374
            V ++D
Sbjct: 189 RVPLED 194

>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb Length = 218

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 279
           +D+ A +   A P+ ++IG G G  L+ MA+ R + +FLG+EV+   V  C  S    G+
Sbjct: 25  LDFPALFGREA-PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL 83
Query: 280 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 339
           +N   +  +A      ++      L +V +  P+P      ++ R+VQ    E V   L 
Sbjct: 84  SNLRVMCHDAVEVLHKMIPD--NSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ 141
Query: 340 HDGKVFLQSDIE 351
             G   + +D E
Sbjct: 142 LGGVFHMATDWE 153

>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein, Methyltransferase From Streptococcus Pneumoniae Tigr4 Length = 214

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 86/184 (46%), Gaps = 18/184 (9%)
Query: 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI---AT 287
            P+ V++GSG G F+ G A++  D+N++G+++   ++++  D +   G+ N   +    +
Sbjct: 42  NPIHVEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS 101
Query: 288 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347
           + T  F        G++  + +   +P   +   + R+  ++ ++    +L  +G++  +
Sbjct: 102 DLTDYFED------GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155
Query: 348 SDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAP 407
           +D   +       F +YG  KL  V  +      +G         V +++EQ   ++G  
Sbjct: 156 TDNRGLFEYSLVSFSQYGX-KLNGVWLDLHASDFEG--------NVXTEYEQKFSNKGQV 206
Query: 408 MYRL 411
           +YR+
Sbjct: 207 IYRV 210

>pdb|2FCA|A Chain A, The Structure Of Bstrmb Length = 213

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 290
            P+ +++G+G G F+ GMA++  D+N++G+E+   ++      ++ S   N   +  +A 
Sbjct: 39  NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA- 97
Query: 291 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350
            T   +    PG++  V +   +P   +   + R+     ++   +++   G +  ++D 
Sbjct: 98  DTLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155
Query: 351 EEVMLRMKQQFLEYGKGKLVLVQDECDT-KTNQGGWLGENSFGVRSDWEQHVIDRGAPMY 409
             +     + F EYG   L+L     D   +N  G        + +++E+     G P+Y
Sbjct: 156 RGLFEYSLKSFSEYG---LLLTYVSLDLHNSNLEG-------NIMTEYEEKFSALGQPIY 205
Query: 410 R 410
           R
Sbjct: 206 R 206

>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase Length = 387

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 15/212 (7%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P  AI+GG  +  K   L  L+   D LI  G ++   + A G  V   L E    D A
Sbjct: 183 RPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEA 242
Query: 67  SDLIQFARDKHITILYPKDFW-CTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
             L+         I  P D    T+        +   + +    + +DIG  S +E+   
Sbjct: 243 KRLLT-----TCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEI 297
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVS 182
           +   K ++W GPV       +  G    T ++      +   ++ G   ++A   +  ++
Sbjct: 298 LKNAKTILWNGPVGVFEFPNFRKG----TEIVANAIADSEAFSIAGGGDTLAAIDLFGIA 353
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214
             I  ++    G A  EF++G++LP V+ L+ 
Sbjct: 354 DKISYIST--GGGAFLEFVEGKVLPAVAMLEE 383

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
16pk_A	415	PGK, 3-phosphoglycerate kinase; ternary complex, g	5e-28
1php_A	394	3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac	3e-27
3q3v_A	403	Phosphoglycerate kinase; structural genomics, cent	7e-27
1v6s_A	390	Phosphoglycerate kinase; riken structu genomics/pr	2e-26
4fey_A	395	Phosphoglycerate kinase; structural genomics, niai	2e-26
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	4e-26
1vpe_A	398	Phosphoglycerate kinase; transferase, hyperthermos	2e-25
2wzb_A	416	Phosphoglycerate kinase 1; hereditary hemolytic an	3e-24
3oz7_A	417	Phosphoglycerate kinase; transferase, ATP binding,	4e-24
2cun_A	410	Phosphoglycerate kinase; structural genomics, tanp	6e-24
1qpg_A	415	PGK, 3-phosphoglycerate kinase; phosphotransferase	2e-23
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	6e-23
1zmr_A	387	Phosphoglycerate kinase; transferase, glycolysis;	6e-23
1fw8_A	416	PGK P72, phosphoglycerate kinase; phosphotransfera	5e-22
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	1e-17
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	9e-17
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	3e-16
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	7e-15
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	1e-09
3lpm_A	259	Putative methyltransferase; structural genomics, p	8e-07
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	4e-04

>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Length = 415

 Score =  113 bits (286), Expect = 5e-28
 Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 18/218 (8%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P  AI+GG  + +K   L  +  R D L+  G M++  + A G  +     E+   + 
Sbjct: 204 PRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEF 263

Query: 66  ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L++ A D+ + ++ P D  C T+    +   I     IP+G   +DIGP+++E+   
Sbjct: 264 ARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQ 323

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
           TI KCK  IW GP+  F     YS G   +   + + +     +++IG   S +   ++ 
Sbjct: 324 TIGKCKSAIWNGPMGVFEMVP-YSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSG 382

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
            +  +       S     G A  E L+G+ LPGV+ LD
Sbjct: 383 EAKRM-------SHVSTGGGASLELLEGKTLPGVTVLD 413

>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* Length = 394

 Score =  111 bits (279), Expect = 3e-27
 Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  V   L+E+   + 
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A   ++ A++K +    P D         +   ++ P   IP  W  +DIGP++ E    
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIA 179
            I + K V+W GP+  F     +++G    T  + + +++     +VIG   S A     
Sbjct: 306 VIRESKLVVWNGPMGVFEM-DAFAHG----TKAIAEALAEALDTYSVIGGGDSAAAVEKF 360

Query: 180 KVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
            ++  +             G A  EF++G+ LPGV AL+
Sbjct: 361 GLADKM-------DHISTGGGASLEFMEGKQLPGVVALE 392

>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} Length = 403

 Score =  110 bits (277), Expect = 7e-27
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 22/218 (10%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P+ A++GG  +  K  AL  L  + D LI  G M+F  + ALG  +   L+E+   + 
Sbjct: 193 ARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEE 252

Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ ++   ++  + I  P D            ++  P+  IP+GW  +DIGP SV     
Sbjct: 253 ANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKE 312

Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
            I+  + + W GP+  F    ++S G    +  +          +V+G   +    A A 
Sbjct: 313 VISDAQTIWWNGPMGVFEI-DKFSKG----SIKMSHYISEGHATSVVGGGDTADVVARAG 367

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
            +  +       +     G A  E ++G+ LPGV AL 
Sbjct: 368 DADEM-------TFISTGGGASLELIEGKELPGVKALR 398

>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Length = 390

 Score =  108 bits (273), Expect = 2e-26
 Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 27/221 (12%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+   D 
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A DL+  A    + +  P+D    +      +  +FP+  IP  +  +DIGP++ E    
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302

Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIA 179
            +   + V W GP+  F     +  G    T  + + ++      TV+G   S+A  A+ 
Sbjct: 303 ALEGARTVFWNGPMGVFEV-PPFDEG----TLAVGQAIAALEGAFTVVGGGDSVA--AVN 355

Query: 180 KVSSSIFGLNMVES-------GSAVWEFLKGRMLPGVSALD 213
           +       L + E        G A  EFL+   LPG+  L+
Sbjct: 356 R-------LGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389

>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A Length = 395

 Score =  108 bits (272), Expect = 2e-26
 Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 23/221 (10%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP AAI+GG  +  K + L+ L  + + LI  G ++   + A G  V   L E+     
Sbjct: 185 KKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 244

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A++++  A+   + I  P D    K    N Q  I     +      +DIGP S + I  
Sbjct: 245 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAE 304

Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
            +     ++W GPV  F F   ++ G    T  L      +   +V G   ++A  AI K
Sbjct: 305 LLKSANTILWNGPVGVFEF-DNFAEG----TKALSLAIAQSHAFSVAGGGDTIA--AIEK 357

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSAL-DRA 215
                FG+    S     G A  EFL+G+ LP +  L ++A
Sbjct: 358 -----FGIKDQVSYISTAGGAFLEFLEGKKLPAIEILKEKA 393

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score =  104 bits (261), Expect = 4e-26
 Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 15/211 (7%)

Query: 208 GVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLV 267
                      D          AQ    DIG G G  L+ ++    D   LGLE+  K+ 
Sbjct: 24  FAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS 83

Query: 268 THCRDSLQL------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 321
            + +D ++        G  N   + +NA     +      G+L  +    P+P F R +H
Sbjct: 84  DYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQLTKMFFLFPDPHFKRTKH 141

Query: 322 RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTN 381
           +WR++  +L+   + +L   G V+  +D+ E+   M   F E+   + V ++D  +    
Sbjct: 142 KWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSE---- 197

Query: 382 QGGWLGENSFGVRSDWEQHVIDRGAPMYRLM 412
                     G  ++  + V+  G   +  +
Sbjct: 198 ---DPVVGHLGTSTEEGKKVLRNGGKNFPAI 225

>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Length = 398

 Score =  106 bits (266), Expect = 2e-25
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 20/219 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           EKPY  ++GG  + +K   +  L  + D ++  G M F  + ALG  V    VE+   D 
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEIT 123
           A +L++ A++K + I+ P D    +   P  + ++     GIP+GW  +DIGP ++E   
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304

Query: 124 STITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
             ++  K V+W GP+  F     ++ G  ++   +  +++    +TV+G   S A     
Sbjct: 305 QKLSDAKTVVWNGPMGVFEI-DDFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKF 362

Query: 180 KVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
            +           S     G A  EFL+G+ LPG++++ 
Sbjct: 363 GLEDKF-------SHVSTGGGASLEFLEGKELPGIASMR 394

>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... Length = 416

 Score =  103 bits (258), Expect = 3e-24
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 21/220 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF             +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323

Query: 123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
              +T+ K+++W GPV  F + + ++ G   L   + K +   C +T+IG   +  C A 
Sbjct: 324 AEAVTRAKQIVWNGPVGVFEWEA-FARGTKALMDEVVKATSRGC-ITIIGGGDTATCCAK 381

Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
                 +       S     G A  E L+G++LPGV AL 
Sbjct: 382 WNTEDKV-------SHVSTGGGASLELLEGKVLPGVDALS 414

>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} PDB: 1ltk_A* 3oza_A Length = 417

 Score =  102 bits (257), Expect = 4e-24
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 21/220 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D +I  G M++     L  + +   L ++  + 
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
              ++++ A+ K++ I  P DF        N   +      GIPD W  +D GP+S+E  
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325

Query: 123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
              I   K VIW GP   F     ++ G+ +   ++ +V++    +T++G   + +    
Sbjct: 326 KDVILTSKTVIWNGPQGVFEM-PNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQ 383

Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
               + I       S     G A  E L+G+ LPGV AL 
Sbjct: 384 QNKKNEI-------SHVSTGGGASLELLEGKELPGVLALS 416

>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} Length = 410

 Score =  101 bits (255), Expect = 6e-24
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 27/225 (12%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFL--ASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGAN 63
           + P   ++GG  + +    +  +    R D ++  GL++     A G  +  + VE    
Sbjct: 189 DSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKK 248

Query: 64  DAASDLIQFARDK----HITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRS 118
               D ++ A +     +  I  P DF             +  + G+   ++ +DIG R+
Sbjct: 249 KGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRT 308

Query: 119 VEEITSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMA 174
            E+    + K + ++  GP+  F    +++ G    T  + K    +   +V+G   S+A
Sbjct: 309 AEKYREILMKARIIVANGPMGVFER-EEFAIG----TVEVFKAIADSPAFSVLGGGHSIA 363

Query: 175 CKAIAKVSSSIFGLNMVE--S--GSAVWEFLKGRMLPGVSALDRA 215
             +I K     +G+  +   S  G A+  F  G  LP + AL  +
Sbjct: 364 --SIQK-----YGITGITHISTGGGAMLSFFAGEELPVLRALQIS 401

>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Length = 415

 Score =  100 bits (251), Expect = 2e-23
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 21/220 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
            +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
               L++ A+ K + ++ P DF        +   +      GIP GW+ +D GP S +  
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321

Query: 123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
            +T+ K K ++W GP   F F  +++ G   L   + K S       +IG   +      
Sbjct: 322 AATVAKAKTIVWNGPPGVFEF-EKFAAGTKALLDEVVKSSAAGN-TVIIGGGDTATVAKK 379

Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
             V+  I       S     G A  E L+G+ LPGV+ L 
Sbjct: 380 YGVTDKI-------SHVSTGGGASLELLEGKELPGVAFLS 412

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246

 Score = 96.0 bits (239), Expect = 6e-23
 Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 217 PFDIDWSAAYHDPA---------QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLV 267
           P D+DWS  Y             +  + DIG G G  ++ ++    +   LG+E+  ++ 
Sbjct: 27  PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86

Query: 268 THCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 319
            +  D +           G  N   +  NA     +      G+L  +    P+P F + 
Sbjct: 87  NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE--KGQLSKMFFCFPDPHFKQR 144

Query: 320 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 365
           +H+ R++  +L+   + +L   G V+  +D++++   M +   E+ 
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190

>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Length = 387

 Score = 98.7 bits (247), Expect = 6e-23
 Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 28/221 (12%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P  AI+GG  +  K   L  L+   D LI  G ++   + A G  V   L E    D 
Sbjct: 182 ARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDE 241

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L+         I  P D              +   + +    + +DIG  S +E+  
Sbjct: 242 AKRLLTTCN-----IPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAE 296

Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
            +   K ++W GPV  F F   +  G    T ++      +   ++ G   ++A  AI  
Sbjct: 297 ILKNAKTILWNGPVGVFEF-PNFRKG----TEIVANAIADSEAFSIAGGGDTLA--AIDL 349

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSAL-DRA 215
                FG+    S     G A  EF++G++LP V+ L +RA
Sbjct: 350 -----FGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERA 385

>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416

 Score = 96.5 bits (241), Expect = 5e-22
 Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 21/226 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
            +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   +
Sbjct: 132 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 191

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
               L++ A+ K + ++ P DF        +   +      GIP GW+ +D GP S +  
Sbjct: 192 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 251

Query: 123 TSTITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
            +T+ K K ++W GP   F F   ++ G   L   + K S       +IG   +      
Sbjct: 252 AATVAKAKTIVWNGPPGVFEFEK-FAAGTKALLDEVVKSSAAGN-TVIIGGGDTATVAKK 309

Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALDRAFPFD 219
             V+  I       S     G A  E L+G+ LPGV+ L       
Sbjct: 310 YGVTDKI-------SHVSTGGGASLELLEGKELPGVAFLSEKKSLS 348

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 211 ALDRAFP-FDIDWSAAYHDPAQ------PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVN 263
           AL+  +P   +++S    D         P+ ++IG G G  L+ MA+ R + +FLG+EV+
Sbjct: 8   ALENYWPVMGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVH 67

Query: 264 GKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW 323
              V  C  S    G++N   +  +A      ++      L +V +  P+P      ++ 
Sbjct: 68  SPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMVQLFFPDPWHKARHNKR 125

Query: 324 RMVQRSLVEAVSDLLVHDGKVFLQSDIEE 352
           R+VQ    E V   L   G   + +D E 
Sbjct: 126 RIVQVPFAELVKSKLQLGGVFHMATDWEP 154

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score = 77.7 bits (192), Expect = 9e-17
 Identities = 24/141 (17%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 271
           +     +   W+  + +   P+ +++G+G G F+ GMA++  D+N++G+E+   ++    
Sbjct: 21  ISNPADYKGKWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV 79

Query: 272 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 331
             ++ S   N   +  +A  T   +    PG++  V +   +P   +   + R+     +
Sbjct: 80  QKVKDSEAQNVKLLNIDAD-TLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFL 136

Query: 332 EAVSDLLVHDGKVFLQSDIEE 352
           +   +++   G +  ++D   
Sbjct: 137 KKYEEVMGKGGSIHFKTDNRG 157

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 23/141 (16%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 271
           +         W   + +   P+ V++GSG G F+ GMA++  D+N++G+++   ++++  
Sbjct: 24  VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 82

Query: 272 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 331
           D +   G+ N   +  + +           G++  + +   +P   +   + R+  ++ +
Sbjct: 83  DKVLEVGVPNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFL 139

Query: 332 EAVSDLLVHDGKVFLQSDIEE 352
           +    +L  +G++  ++D   
Sbjct: 140 DTFKRILPENGEIHFKTDNRG 160

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 72.4 bits (177), Expect = 7e-15
 Identities = 18/171 (10%), Positives = 52/171 (30%), Gaps = 15/171 (8%)

Query: 219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNG----KLVTHCRDSL 274
           D ++          +V+D+G+G+G     +AR+      + L+ +     K+        
Sbjct: 17  DAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP 75

Query: 275 QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 334
              G+ N  ++   A           P    +  +    P +             ++  +
Sbjct: 76  AKGGLPNLLYLWATA--------ERLPPLSGVGELHVLMP-WGSLLRGVLGSSPEMLRGM 126

Query: 335 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 385
           + +        +  ++      +  +  E+ +       +    +  + GW
Sbjct: 127 AAVCRPGASFLVALNLHAWRPSV-PEVGEHPEPTPDSADEWLAPRYAEAGW 176

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 57.1 bits (137), Expect = 1e-09
 Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 12/133 (9%)

Query: 221 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR----DSLQL 276
           + +         + +D+G+G+G  +  +A   ++  ++G++   + +             
Sbjct: 16  ELTEIIGQF-DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK 74

Query: 277 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 336
            G++N  F+   A     S+          +SI  P               R ++  V+D
Sbjct: 75  GGLSNVVFVIAAA----ESLPFELKNIADSISILFPWGTL---LEYVIKPNRDILSNVAD 127

Query: 337 LLVHDGKVFLQSD 349
           L   +      + 
Sbjct: 128 LAKKEAHFEFVTT 140

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 14/143 (9%)

Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN---------GYF 284
           ++D+ SGNG+  L ++  R     +G+E+  +L    + S+  + + +            
Sbjct: 53  IIDLCSGNGIIPLLLST-RTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111

Query: 285 IATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 343
                      +  + P       S++  N  F    H         +   + LL   GK
Sbjct: 112 TDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGK 171

Query: 344 VFL---QSDIEEVMLRMKQQFLE 363
                    + +++  M++  LE
Sbjct: 172 ANFVHRPERLLDIIDIMRKYRLE 194

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 19/147 (12%)

Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN------------ 281
           + D+G+G G   + +A + +       E + ++    R SL+L                 
Sbjct: 40  IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99

Query: 282 GYFIATNATSTFRS----IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDL 337
                    +         V   P        + P+            +    +   S +
Sbjct: 100 TLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAI 159

Query: 338 LVHDGK---VFLQSDIEEVMLRMKQQF 361
           +V  G+   +     + E++     +F
Sbjct: 160 MVSGGQLSLISRPQSVAEIIAACGSRF 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 46/345 (13%), Positives = 89/345 (25%), Gaps = 78/345 (22%)

Query: 76  KHITILYPKD------FWCTKIHHPNQVEIFPSHGI-PD-GW--EPVDIGPRSVEEITST 125
            HI +           FW         V+ F    +  +  +   P+    R    +T  
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 126 ITKCKKVIWVGPVKFRFSSQYS----NGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
             + +  ++     F   ++Y+        KL   L ++     NV + G          
Sbjct: 112 YIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAK-NVLIDG---------- 157

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALD----RAFPFDIDW--SAAYHDPA----- 230
                   ++ SG           +     L         F I W      + P      
Sbjct: 158 --------VLGSGKTW--------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 231 -QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVT--HCRDSLQLSGITNG----Y 283
            Q L+  I           +  +  ++ +  E+   L +  +    L L  + N      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 284 F-------IATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 336
           F       + T        + A+    + L             E +  ++ + L     D
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVK-SLLLKYLDCRPQD 317

Query: 337 L--LVHDGKVFLQSDIEEVMLRMK---QQFLEYGKGKLVLVQDEC 376
           L   V        S I E +         +      KL  + +  
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 14/111 (12%), Positives = 46/111 (41%), Gaps = 12/111 (10%)

Query: 195 SAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD 254
           S  ++  + + +P     D  +   +  ++   +     ++D+G+G GL    +  K  +
Sbjct: 14  SGKYDEQRRKFIPC---FDDFYGVSVSIASVDTENPD--ILDLGAGTGLLSAFLMEKYPE 68

Query: 255 LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASY 300
             F  ++++ K++   ++  +  G     +I  + +       +  +V++ 
Sbjct: 69  ATFTLVDMSEKMLEIAKN--RFRGNLKVKYIEADYSKYDFEEKYDMVVSAL 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
16pk_A	415	PGK, 3-phosphoglycerate kinase; ternary complex, g	100.0
1vpe_A	398	Phosphoglycerate kinase; transferase, hyperthermos	100.0
3oz7_A	417	Phosphoglycerate kinase; transferase, ATP binding,	100.0
1v6s_A	390	Phosphoglycerate kinase; riken structu genomics/pr	100.0
1fw8_A	416	PGK P72, phosphoglycerate kinase; phosphotransfera	100.0
1qpg_A	415	PGK, 3-phosphoglycerate kinase; phosphotransferase	100.0
3q3v_A	403	Phosphoglycerate kinase; structural genomics, cent	100.0
1php_A	394	3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac	100.0
4fey_A	395	Phosphoglycerate kinase; structural genomics, niai	100.0
2wzb_A	416	Phosphoglycerate kinase 1; hereditary hemolytic an	100.0
1zmr_A	387	Phosphoglycerate kinase; transferase, glycolysis;	100.0
2cun_A	410	Phosphoglycerate kinase; structural genomics, tanp	100.0
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	100.0
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	100.0
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.97
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.97
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.95
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.67
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.66
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.64
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.64
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.62
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.61
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.6
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.6
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.6
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.59
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.58
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.57
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.57
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.56
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.55
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.55
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.55
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.55
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.55
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.54
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.54
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.54
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.54
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.54
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.53
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.53
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.53
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.53
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.52
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.52
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.52
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.51
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.51
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.51
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.51
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.51
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.51
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.51
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.51
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.51
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.51
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.5
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.5
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.49
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.49
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.49
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.49
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.49
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.49
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.49
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.49
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.48
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.48
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.48
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.48
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.48
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.48
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.47
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.47
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.47
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.47
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.47
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.47
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.47
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.46
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.46
3ocj_A	305	Putative exported protein; structural genomics, PS	99.46
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.46
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.46
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.46
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.46
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.46
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.45
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.45
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.45
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.45
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.45
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.45
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.44
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.44
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.44
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.44
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.44
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.43
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.43
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.43
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.43
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.43
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.43
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.43
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.43
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.42
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.42
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.42
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.42
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.42
2o07_A	304	Spermidine synthase; structural genomics, structur	99.42
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.42
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.42
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.41
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.41
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.41
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.41
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.41
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.41
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.41
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.41
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.4
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.4
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.4
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.4
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.4
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.4
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.4
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.39
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.39
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.39
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.39
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.39
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.39
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.39
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.39
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.38
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.38
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.38
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.38
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.38
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.38
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.38
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.37
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.37
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.37
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.36
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.36
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.36
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.36
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.36
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.35
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.35
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.35
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.35
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.34
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.33
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.33
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.32
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.32
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.32
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.32
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.32
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.32
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.32
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.32
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.32
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.31
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.31
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.31
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.31
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.31
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.31
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.3
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.3
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.3
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.29
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.29
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.29
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.29
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.29
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.29
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.29
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.28
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.28
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.28
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.28
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.27
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.27
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.27
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.27
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.26
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.26
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.25
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.24
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.24
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.24
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.24
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.24
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.24
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.24
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.23
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.23
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.22
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.22
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.21
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.21
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.2
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.2
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.2
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.2
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.2
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.2
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.2
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.19
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.19
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.19
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.19
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.18
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.18
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.17
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.16
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.16
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.16
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.15
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.15
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.14
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.14
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.13
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.12
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.12
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.11
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.1
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.09
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.09
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.08
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.07
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.06
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.05
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.04
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.02
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.0
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.0
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.0
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.99
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.99
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.99
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.99
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.99
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.97
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.97
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.96
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.96
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.95
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.95
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.94
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.94
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.92
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.92
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.9
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.89
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.87
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.87
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.86
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.83
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.8
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.79
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.78
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.76
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.75
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.73
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.68
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.67
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.66
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.63
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.59
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.59
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.59
3lkd_A	542	Type I restriction-modification system methyltrans	98.58
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.53
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.52
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.5
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.45
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.44
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.43
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.4
3khk_A	544	Type I restriction-modification system methylation	98.34
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.22
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.08
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.08
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.0
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.98
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.96
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.93
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.89
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.89
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.79
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.7
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.48
3ufb_A	530	Type I restriction-modification system methyltran	97.48
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.41
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.21
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.19
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.14
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.12
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.06
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.9
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.77
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.72
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.57
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.41
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.3
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.19
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.14
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.94
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.86
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.74
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.47
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.44
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.57
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.37
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.16
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.54
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.38
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.29
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.78
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.21
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	92.15
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.79
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.53
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.41
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.37
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	91.08
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	90.98
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	90.87
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	90.59
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.56
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.04
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	89.92
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	89.8
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	89.59
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	89.3
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	89.3
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	89.21
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	89.07
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	88.72
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	88.61
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	88.52
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	88.01
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	87.92
3c85_A	183	Putative glutathione-regulated potassium-efflux S	87.87
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	87.74
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.63
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	87.45
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	87.24
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	87.18
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	87.09
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	87.01
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	86.82
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	86.54
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	86.07
3me5_A	482	Cytosine-specific methyltransferase; structural ge	85.97
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	84.94
3gms_A	340	Putative NADPH:quinone reductase; structural genom	84.9
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	84.58
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	84.28
4had_A	350	Probable oxidoreductase protein; structural genomi	83.44
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	83.35
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	83.1
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	82.47
1id1_A	153	Putative potassium channel protein; RCK domain, E.	82.45
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	82.35
4eye_A	342	Probable oxidoreductase; structural genomics, niai	82.28
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	82.13
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	81.79
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	81.73
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	80.81
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	80.61
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	80.49
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	80.25

>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*

Probab=100.00  E-value=2.6e-65  Score=505.31  Aligned_cols=211  Identities=27%  Similarity=0.481  Sum_probs=196.1

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||++|+||++|||+|||||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       200 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~A~~ll~ka~~~g~~i~  279 (415)
T 16pk_A          200 LGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVI  279 (415)
T ss_dssp             HSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHHHhcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+|++|++++ .+.+..+++.++||+|||++||||+|++.|++.|..|+||+|||||||||.++|+.||++++++++++
T Consensus       280 lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~  359 (415)
T 16pk_A          280 LPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRG  359 (415)
T ss_dssp             CCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHH
T ss_pred             CCceeehhhcccCCCceEEeehhcCCCCCEEeecCHHHHHHHHHHHHhCCEEEEECCcccccCchHHHHHHHHHHHHHhc
Confidence            99999999986 44556678889999999999999999999999999999999999999999999999999999999997


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      ++..+.+||+||++   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       360 t~~~~a~sIvGGGDt~aAv~~~G~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~  414 (415)
T 16pk_A          360 THEHGLMSIIGGGDSASAAELSGEAKRMSHVST--GGGASLELLEGKTLPGVTVLDD  414 (415)
T ss_dssp             HHHHCCEEEECSHHHHHHHHHTTCTTTSSEECS--CHHHHHHHHTTCCCHHHHTSCB
T ss_pred             cCCCCCEEEECCcHHHHHHHHcCCccCceEEeC--ChHHHHHHHcCCCcchHHHhhc
Confidence            52112488888875   4457889999999999  8999999999999999999864

>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1

Probab=100.00  E-value=3e-65  Score=503.34  Aligned_cols=210  Identities=26%  Similarity=0.503  Sum_probs=196.4

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||.+|+||++|||+|||||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       181 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~~~~a~~ll~ka~~~g~~i~  260 (398)
T 1vpe_A          181 TYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIV  260 (398)
T ss_dssp             HHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChhhHHHHHHHHHHHHhcCCEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEec-CCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFP-SHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK  159 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~-~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~  159 (420)
                      ||+|++|++++ .+.+..+++ .++||++||++||||+|++.|++.+..|+||+|||||||||.++|+.||+++++++++
T Consensus       261 lPvD~vva~~f~~~a~~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~  340 (398)
T 1vpe_A          261 LPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAA  340 (398)
T ss_dssp             CCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHH
T ss_pred             CCceeehhhcccCCCCeEEecccccCCCCCEeeecCHHHHHHHHHHHhhCCEEEEECCcccccCchHHHHHHHHHHHHHh
Confidence            99999999986 445566778 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       160 ~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      +++.++ +||+||++   ++.++|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       341 ~t~~~~-~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~  395 (398)
T 1vpe_A          341 LTEKGA-ITVVGGGDSAAAVNKFGLEDKFSHVST--GGGASLEFLEGKELPGIASMRI  395 (398)
T ss_dssp             HHHTTC-EEEEESHHHHHHHHHTTCGGGSSEEES--CHHHHHHHHTSSCCHHHHTSCB
T ss_pred             hccCCC-EEEECCcHHHHHHHHcCCcCCccEEeC--ChHHHHHHHcCCCCcHHHHHHh
Confidence            764434 88888875   4457889899999999  8999999999999999999975

>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A

Probab=100.00  E-value=6.9e-65  Score=503.41  Aligned_cols=210  Identities=24%  Similarity=0.472  Sum_probs=195.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHh-cCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a-~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      +++|+||+++|+|||||||||.+|+||+++||+|||||+||||||+| +|++||+|++|++.++.|++|+++|+++|++|
T Consensus       202 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~~G~~iG~Sl~e~d~~~~a~~il~~a~~~g~~i  281 (417)
T 3oz7_A          202 LENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQI  281 (417)
T ss_dssp             HTSCCSSEEEEEECSCSTTSHHHHHHHHTTCSEEEEETTHHHHHHHHHHCCCBTTSCCCTTTHHHHHHHHHHHHHTTCEE
T ss_pred             HcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEeccHHHHHHHHHHcCCccCchhcCccChHHHHHHHHHHHHcCCEE
Confidence            57999999999999999999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceeEe-cCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014711           81 LYPKDFWCTKIH-HPNQVEIF-PSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (420)
Q Consensus        81 ~lP~D~~~~~~~-~~~~~~~~-~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (420)
                      +||+|++|++++ .+.+..++ +.++||++||++||||+|++.|++.+..|+||+|||||||||+++|+.||++++++++
T Consensus       282 ~LPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNGP~GvFE~~~Fa~GT~~va~aia  361 (417)
T 3oz7_A          282 FLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVV  361 (417)
T ss_dssp             ECCSEEEEESSSSTTSCEEEEESSSCBCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSBCTTSSTTTHHHHHHHHHHH
T ss_pred             ECCceeEEeecccCCCCeEEecccccCCCCCeeeecCHHHHHHHHHHHHhCCEEEEECCCccccccchhHHHHHHHHHHH
Confidence            999999999887 45566666 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      ++|++++ +||+||++   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       362 ~~t~~~a-~sIvGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~  417 (417)
T 3oz7_A          362 EVTKKGA-ITIVGGGDTASLVEQQNKKNEISHVST--GGGASLELLEGKELPGVLALSN  417 (417)
T ss_dssp             HHHHHTC-EEEECSHHHHHHHHHTTCGGGSSEECS--CSHHHHHHHTTCCCHHHHTSCC
T ss_pred             hhccCCC-EEEEcCcHHHHHHHHcCCcCCccEEcC--ChHHHHHHHcCCCCcceeeccC
Confidence            9765444 78888875   4457899899999999  9999999999999999998863

>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A

Probab=100.00  E-value=7.6e-65  Score=499.31  Aligned_cols=208  Identities=26%  Similarity=0.461  Sum_probs=194.5

Q ss_pred             CCCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         1 ~~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      .+++|+||+++|+|||||||||++|+||++|||+|||||+||||||+|+|++||+|++|++.++.|++|+++++++|++|
T Consensus       178 ~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~ll~~a~~~g~~i  257 (390)
T 1v6s_A          178 LLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRV  257 (390)
T ss_dssp             TTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHHHHHHHHHHTCEE
T ss_pred             HhcCCCCCeEEEEcCCchhhHHHHHHHHHHHhccceeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHHcCCEE
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHh
Q 014711           81 LYPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK  159 (420)
Q Consensus        81 ~lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~  159 (420)
                      +||+|++|++++ .+.+..+++.++||++||++||||+|++.|++.+..|+||+|||||||||.++|+.||+++++++++
T Consensus       258 ~lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~  337 (390)
T 1v6s_A          258 YLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAA  337 (390)
T ss_dssp             ECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTTSTTTTHHHHHHHHHHHT
T ss_pred             ECCcChhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCCEEEEeCCcccccCchHHHHHHHHHHHHHh
Confidence            999999999986 4555667889999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccc
Q 014711          160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (420)
Q Consensus       160 ~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~  213 (420)
                      ++  ++ +||+||++   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.
T Consensus       338 ~~--~~-~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~  389 (390)
T 1v6s_A          338 LE--GA-FTVVGGGDSVAAVNRLGLKERFGHVST--GGGASLEFLEKGTLPGLEVLE  389 (390)
T ss_dssp             CS--SC-EEEEESHHHHHHHHTTTCGGGSSEECC--SSSHHHHHHHHSCCHHHHTTC
T ss_pred             cC--CC-EEEECChHHHHHHHHcCCccCceEEeC--ChHHHHHHHcCCCcchHHHhc
Confidence            53  23 88888875   4457888889999999  999999999999999999886

>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1

Probab=100.00  E-value=5e-65  Score=504.25  Aligned_cols=212  Identities=25%  Similarity=0.458  Sum_probs=197.2

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCC-CCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLP-VPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~-ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      +++|+||+++|+|||||||||++|+||++|||+|||||+||||||+|+|++ ||+|++|++.++.|++|+++|+++|++|
T Consensus       128 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~IG~SL~E~d~~~~a~~ll~kak~~g~~i  207 (416)
T 1fw8_A          128 LENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEV  207 (416)
T ss_dssp             HHSCCSSEEEEEECSCSTTTHHHHHHHHTTCSEEEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HcCCCCCeEEEEcCcchhhHHHHHHHHHHhhCeeEeChHHHHHHHHHcCCCccCccccChhhHHHHHHHHHHHHhcCCEE
Confidence            579999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceeE-ecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014711           81 LYPKDFWCTKIH-HPNQVEI-FPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (420)
Q Consensus        81 ~lP~D~~~~~~~-~~~~~~~-~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (420)
                      +||+|++|++++ .+.+..+ ++.++||+|||++||||+|++.|++.|..|+||+|||||||||+++|+.||++++++++
T Consensus       208 ~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDIGp~T~~~~~~~i~~akTIvWNGPmGVFE~~~Fa~GT~~va~aia  287 (416)
T 1fw8_A          208 VLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVV  287 (416)
T ss_dssp             ECCSEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             ECCceEEEeeccCCCCCeEEecchhcCCCCCEEEecCHHHHHHHHHHHhhCCEEEEECCCccccCchHHHHHHHHHHHHH
Confidence            999999999986 4455556 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccCC
Q 014711          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAF  216 (420)
Q Consensus       159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~~  216 (420)
                      ++++.+ .+||+||++   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+..
T Consensus       288 ~~~~~~-a~sIvGGGDt~aav~~~G~~d~~shiST--GGGA~LE~LEGk~LPgV~aL~~~~  345 (416)
T 1fw8_A          288 KSSAAG-NTVIIGGGDTATVAKKYGVTDKISHVST--GGGASLELLEGKELPGVAFLSEKK  345 (416)
T ss_dssp             HHHHTT-CEEEECTTHHHHHHHHTTCGGGSSEECS--CSHHHHHHHTTCCCHHHHTSCSSC
T ss_pred             hhccCC-CEEEEcCcHHHHHHHHcCCCCCcceecc--ccceehHhhcCCCChHHHHHHhcc
Confidence            975433 388888875   4567899899999999  899999999999999999998653

>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*

Probab=100.00  E-value=5.3e-65  Score=503.97  Aligned_cols=210  Identities=25%  Similarity=0.459  Sum_probs=195.5

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCC-CCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLP-VPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~-ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      +++|+||+++|+|||||||||.+|+||++|||+|||||+||||||+|+|++ ||+|++|++.++.|++|+++|+++|++|
T Consensus       198 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i  277 (415)
T 1qpg_A          198 LENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEV  277 (415)
T ss_dssp             HSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeChHHHHHHHHHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEE
Confidence            579999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceeE-ecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014711           81 LYPKDFWCTKIH-HPNQVEI-FPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (420)
Q Consensus        81 ~lP~D~~~~~~~-~~~~~~~-~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (420)
                      +||+|++|++++ .+.+..+ ++.++||+|||++||||+|++.|+++|..|+||+|||||||||+++|+.||++++++++
T Consensus       278 ~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia  357 (415)
T 1qpg_A          278 VLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVV  357 (415)
T ss_dssp             ECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             ECCcchhhhhccCCCCCeEEecchhcCCCCCeeeccCHHHHHHHHHHHhhCCEEEEeCCccccccchHHHHHHHHHHHHH
Confidence            999999999986 3444455 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      ++++.++ +||+||++   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       358 ~~t~~~a-~sIvGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LEGk~LPgv~aL~~  413 (415)
T 1qpg_A          358 KSSAAGN-TVIIGGGDTATVAKKYGVTDKISHVST--GGGASLELLEGKELPGVAFLSE  413 (415)
T ss_dssp             HHHHHTC-EEEECCHHHHHHHHHTTCGGGSSEECC--CTHHHHHHHTSCCCHHHHTSCB
T ss_pred             hhccCCC-EEEECCcHHHHHHHHcCCCCCceEEeC--ChHHHHHHHcCCCCchHHHhhc
Confidence            9754333 78888875   4567899899999999  9999999999999999999875

>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0

Probab=100.00  E-value=6.6e-65  Score=500.76  Aligned_cols=208  Identities=27%  Similarity=0.486  Sum_probs=194.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||.+|+||+++||+|||||+||||||+|+|++||+|++|++.++.|++|+++|+++|++|+
T Consensus       189 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~e~d~~~~a~~ll~~a~~~g~~i~  268 (403)
T 3q3v_A          189 IKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIY  268 (403)
T ss_dssp             TTCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECSTTHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             HcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccchhhHHHHHHHHHHHHHcCCEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+|++|++++ .+.+..++++++||++||++||||+|++.|++++..|+||+||||||+||.++|+.||++++++++++
T Consensus       269 LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTIvWNGP~GvFE~~~Fa~GT~~va~aia~~  348 (403)
T 3q3v_A          269 LPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEG  348 (403)
T ss_dssp             CCSEEEEESSSSTTSCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHS
T ss_pred             CCceEEEeeccCCCCceEEEecccCCCCCEeeecChHHHHHHHHHHHhCCEEEEECCCccccccchhHHHHHHHHHHHhc
Confidence            99999999886 45566677889999999999999999999999999999999999999999999999999999999885


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccC
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~  215 (420)
                      .    .+||+||++   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+.
T Consensus       349 ~----a~sIvGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~~  400 (403)
T 3q3v_A          349 H----ATSVVGGGDTADVVARAGDADEMTFIST--GGGASLELIEGKELPGVKALRSK  400 (403)
T ss_dssp             S----SEEEEESHHHHHHHHHTTCGGGSSEECC--CHHHHHHHHTTCCCHHHHTTBC-
T ss_pred             C----CEEEECCcHHHHHHHHcCCcCCccEEcC--ChHHHHHHHcCCCCcHHHHHhhh
Confidence            3    488888875   4457889899999999  89999999999999999999763

>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*

Probab=100.00  E-value=1e-64  Score=499.04  Aligned_cols=208  Identities=26%  Similarity=0.491  Sum_probs=194.7

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||.+|+||++|||+|||||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       182 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~~~~a~~ll~~a~~~g~~i~  261 (394)
T 1php_A          182 LSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFY  261 (394)
T ss_dssp             HHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHhcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+|++|++++ .+.+..+++.++||+|||++||||+|++.|++.+..|+||+|||||||||.++|+.||++++++++++
T Consensus       262 lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~  341 (394)
T 1php_A          262 MPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEA  341 (394)
T ss_dssp             CCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHC
T ss_pred             CCcchhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCCEEEEeCCcccccCchHHHHHHHHHHHHHhc
Confidence            99999999987 45566678889999999999999999999999999999999999999999999999999999999985


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      .  + .+||+||++   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       342 ~--~-~~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~  393 (394)
T 1php_A          342 L--D-TYSVIGGGDSAAAVEKFGLADKMDHIST--GGGASLEFMEGKQLPGVVALED  393 (394)
T ss_dssp             T--T-CEEEECSHHHHHHHHHTTCGGGSSEECS--CTHHHHHHHTTCCCHHHHTSCB
T ss_pred             C--C-CEEEECChHHHHHHHHcCCCCCccEEeC--ChHHHHHHHcCCCcchHHHhhc
Confidence            2  2 388888875   4457889899999999  9999999999999999999864

>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A

Probab=100.00  E-value=8.4e-65  Score=498.89  Aligned_cols=208  Identities=24%  Similarity=0.353  Sum_probs=194.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||.+|+||+++||+|||||+||||||+|+|++||+|++|++.++.|++|+++|+++|++|+
T Consensus       181 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~il~~a~~~g~~i~  260 (395)
T 4fey_A          181 LKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAEATEILAKAKALGVNIP  260 (395)
T ss_dssp             HTSCCSSEEEEEEESCHHHHHHHHHHHTTTCSEEEEEEHHHHHHHHHTTCCCTTCCCCGGGHHHHHHHHHHHHHTTCBCC
T ss_pred             hcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEEChHHHHHHHHHcCCccCccccchhhHHHHHHHHHHHHHcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+|++|++++ .+.+..++++++||++||++||||+|++.|++.+..|+||+|||||||||.++|+.||+++++++++.
T Consensus       261 LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNGP~GvFE~~~Fa~GT~~va~aia~~  340 (395)
T 4fey_A          261 VPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAELLKSANTILWNGPVGVFEFDNFAEGTKALSLAIAQS  340 (395)
T ss_dssp             CCSEEEEESSSSTTCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEECCSSCTTSGGGCHHHHHHHHHHHHH
T ss_pred             ccceEEEeccccCCCceEEEEcccCCCCCcceecChHHHHHHHHHHHhCCEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            99999999886 45566677889999999999999999999999999999999999999999999999999999999885


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccC
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~  215 (420)
                          ..+||+||++   ++..+|+.++++|+||  ||||+++||+|+.+|++++|.+.
T Consensus       341 ----~a~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~~  392 (395)
T 4fey_A          341 ----HAFSVAGGGDTIAAIEKFGIKDQVSYIST--AGGAFLEFLEGKKLPAIEILKEK  392 (395)
T ss_dssp             ----CSEEEEESHHHHHHHHHTTCSTTSSEEEC--CSHHHHHHHTTCCCHHHHHHHHT
T ss_pred             ----CCeEEECCcHHHHHHHHcCCcCCceEEcC--ChHHHHHHHcCCCchHHHHHHhh
Confidence                2488888875   4457899999999999  99999999999999999998753

>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ...

Probab=100.00  E-value=6.5e-65  Score=503.44  Aligned_cols=210  Identities=26%  Similarity=0.508  Sum_probs=195.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCC-CCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLP-VPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~-ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      +++|+||+++|+|||||||||.+|+||++|||+|||||+||||||+|+|++ ||+|++|++.++.|++|+++|+++|++|
T Consensus       200 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i  279 (416)
T 2wzb_A          200 LESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKI  279 (416)
T ss_dssp             HHSCCSSEEEEECSSCHHHHGGGHHHHTTTCSEEEECGGGHHHHHHHHHCCCCTTSCCCHHHHTTHHHHHHHHHHTTCEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeChHHHHHHHHHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEE
Confidence            579999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceeE-ecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014711           81 LYPKDFWCTKIH-HPNQVEI-FPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (420)
Q Consensus        81 ~lP~D~~~~~~~-~~~~~~~-~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (420)
                      +||+|++|++++ .+.+..+ ++.++||+|||++||||+|++.|+++|..|+||+|||||||||+++|+.||++++++++
T Consensus       280 ~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia  359 (416)
T 2wzb_A          280 TLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVV  359 (416)
T ss_dssp             ECCCEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             ECCcchhhhhccCCCCCeEEecchhcCCCCCeeeecCHHHHHHHHHHHhhCCEEEEECCCcccccchHHHHHHHHHHHHH
Confidence            999999999986 4455556 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      ++++.++ +||+||++   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       360 ~~t~~~a-~sIvGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LEGk~LPgv~aL~~  415 (416)
T 2wzb_A          360 KATSRGC-ITIIGGGDTATCCAKWNTEDKVSHVST--GGGASLELLEGKVLPGVDALSN  415 (416)
T ss_dssp             HHHHTTC-EEEEESTTHHHHHHHTTCTTSSSEEES--CSHHHHHHHHTCCCHHHHTSCB
T ss_pred             hhccCCC-EEEEcCcHHHHHHHHcCCCCCceEEeC--chHHHHHHHcCCCccHHHHHhc
Confidence            9764443 78888764   4568899999999999  9999999999999999998864

>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.4e-63  Score=484.92  Aligned_cols=202  Identities=23%  Similarity=0.372  Sum_probs=188.3

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||.+|+||++|||+|||||+||||||+|+|++||+|++|++.++.|++|+++     ++|+
T Consensus       178 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~ll~~-----~~i~  252 (387)
T 1zmr_A          178 LKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEAKRLLTT-----CNIP  252 (387)
T ss_dssp             HSSCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCSCCGGGHHHHHHHHTT-----SCCC
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHh-----CCcc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999975     8999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+|++|++++ .+.+..+++.++||++||++||||+|++.|++.+..|+||+|||||||||.++|+.||++++++++++
T Consensus       253 lPvD~vva~~f~~~~~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~  332 (387)
T 1zmr_A          253 VPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADS  332 (387)
T ss_dssp             CCSEEEEESSSSSSCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSBCTTSGGGCHHHHHHHHHHHHS
T ss_pred             CCccceeeeccCCCCceEEeehhhCCCCCEEeecCHHHHHHHHHHHhhCCEEEEECCcccccCchHHHHHHHHHHHHHhc
Confidence            99999999876 44555677889999999999999999999999999999999999999999999999999999999985


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      .    .+||+||++   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       333 ~----~~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~  383 (387)
T 1zmr_A          333 E----AFSIAGGGDTLAAIDLFGIADKISYIST--GGGAFLEFVEGKVLPAVAMLEE  383 (387)
T ss_dssp             S----SEEEECSHHHHHHHHHHTCGGGSSEECC--CTHHHHHHHTTCCCHHHHHHHH
T ss_pred             C----CeEEECCHHHHHHHHHcCCccCceEEeC--ChHHHHHHHcCCCCchHHHHHh
Confidence            2    388888875   4457889899999999  9999999999999999999875

>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}

Probab=100.00  E-value=6.3e-61  Score=474.20  Aligned_cols=200  Identities=18%  Similarity=0.257  Sum_probs=186.0

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHh--cCeEEEehHHHHHHHHhcCCCCCCc---cccc----CchHHHHHHHHH
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASR--CDGLIFVGLMSFQIMHALGLPVPPE---LVEK----GANDAASDLIQF   72 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~--~d~i~~gG~~a~~fl~a~g~~ig~s---~~e~----~~~~~a~~~~~~   72 (420)
                      +++|+||+++|+|||||||||++|+||++|  ||+|||||+||||||+|+|++||+|   ++|+    +.++.|++|+++
T Consensus       185 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~k~~vD~liiGGgma~tFl~A~G~~iG~S~~~l~E~~g~~d~~~~a~~ll~k  264 (410)
T 2cun_A          185 YYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDYVKHAEEILDE  264 (410)
T ss_dssp             HTCCCSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCCCCHHHHHHHHTTTGGGGHHHHHHHHHH
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHhcccCCCEEEEChHHHHHHHHHcCCCcCcchhhhhhcccchhhHHHHHHHHHh
Confidence            579999999999999999999999999999  9999999999999999999999999   9999    899999999998


Q ss_pred             HhhCCCeeecceeEEEecCCCCCceeEecCCC-----CCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCC
Q 014711           73 ARDKHITILYPKDFWCTKIHHPNQVEIFPSHG-----IPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYS  147 (420)
Q Consensus        73 ~~~~~~~i~lP~D~~~~~~~~~~~~~~~~~~~-----i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~  147 (420)
                      +   |++|+||+|++|+++   .+..+++.++     || |||++||||+|++.|++.+..|+||+|||||||||.++|+
T Consensus       265 a---g~~i~lPvD~vva~~---a~~~~~~~~~~~~~~ip-~~m~lDiGp~T~~~~~~~i~~akTIvWNGPmGvFE~~~Fa  337 (410)
T 2cun_A          265 F---YPYIRTPVDFAVDYK---GERVEIDLLSENRGLLH-QYQIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFA  337 (410)
T ss_dssp             H---GGGEECCSEEEEEET---TEEEEEESSSGGGGGGG-TSCEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGC
T ss_pred             c---cCeEeCCceeEEecC---CCeEEEecccccccCCC-CCeeeeeCHHHHHHHHHHHhhCCEEEEECCcccccCchHH
Confidence            7   899999999999986   3445678888     99 9999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccC
Q 014711          148 NGASKLTGMLCKVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (420)
Q Consensus       148 ~GT~~l~~~~a~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~  215 (420)
                      .||++++++++++.    .+||+||++   ++..+|+ ++++|+||  ||||+|+||+|+.+|++++|.+.
T Consensus       338 ~GT~~va~aia~~~----~~sivGGGDt~aav~~~g~-d~~shiST--GGGA~Le~LeGk~LPgv~aL~~~  401 (410)
T 2cun_A          338 IGTVEVFKAIADSP----AFSVLGGGHSIASIQKYGI-TGITHIST--GGGAMLSFFAGEELPVLRALQIS  401 (410)
T ss_dssp             HHHHHHHHHHHHSS----SEEEEECGGGGGGGGGSCC-CCCSEECS--CSHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC----CeEEECChHHHHHHHHhCC-CCcEEEcC--ChHHHHHHHcCCCCcHHHHHHHH
Confidence            99999999998852    388888875   4457889 89999999  99999999999999999999754

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=100.00  E-value=1.1e-32  Score=257.55  Aligned_cols=187  Identities=23%  Similarity=0.353  Sum_probs=165.4

Q ss_pred             ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc
Q 014711          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~  298 (420)
                      ..+|.+.|++ ++++|||||||+|.++..+|+.+|+.+|+|+|+|+.+++.|++++.+.+++|++++++|+.++++..+ 
T Consensus        24 ~~d~~~~f~~-~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-  101 (218)
T 3dxy_A           24 MLDFPALFGR-EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-  101 (218)
T ss_dssp             CCCHHHHHSS-CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-
T ss_pred             CCCHHHHcCC-CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-
Confidence            4678888886 68999999999999999999999999999999999999999999999999999999999999765555 


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecccccc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  378 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~  378 (420)
                       +++++|.|+++||+||++.+|+++|++++.+++.+.++|||||.|++.||+..|++++.+.+.+.+-+. ++..     
T Consensus       102 -~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~-~~~~-----  174 (218)
T 3dxy_A          102 -PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYK-NLSE-----  174 (218)
T ss_dssp             -CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE-ECCT-----
T ss_pred             -CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcc-cccC-----
Confidence             588999999999999999999999999999999999999999999999999999999999998765332 2211     


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          379 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       379 ~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                         ..+|.......+.|+||+++.+.|+.+|++.|+|++
T Consensus       175 ---~~~~~~~~~~~~~t~fE~k~~~~G~~~~~~~~~~~~  210 (218)
T 3dxy_A          175 ---SNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK  210 (218)
T ss_dssp             ---TSSCBCCCTTSCCCTTCCTTCTTCCSCEEEEEEECC
T ss_pred             ---cCccCCCCCCCCCcHHHHHHHHCCCCeEEEEEEEcc
Confidence               123444455688999999999999999999999986

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=100.00  E-value=4e-32  Score=252.34  Aligned_cols=186  Identities=18%  Similarity=0.387  Sum_probs=166.2

Q ss_pred             ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc
Q 014711          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~  298 (420)
                      ..+|.+.|++ ++++|||||||+|.+++.||+.+|+.+|+|+|+|+.+++.|++++.+.+++|++++++|+.++ +..+ 
T Consensus        28 ~~~~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l-~~~~-  104 (213)
T 2fca_A           28 KGKWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL-TDVF-  104 (213)
T ss_dssp             TTCHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH-HHHC-
T ss_pred             CCCHHHHcCC-CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHH-Hhhc-
Confidence            4578888875 579999999999999999999999999999999999999999999999999999999999985 4444 


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecccccc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  378 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~  378 (420)
                       +++++|.|+++||+||++.+|+++|++++.+++++.++|||||.|++.||+..+.+++.+.+.++++.......|.+  
T Consensus       105 -~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~~d~~--  181 (213)
T 2fca_A          105 -EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDLH--  181 (213)
T ss_dssp             -CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG--
T ss_pred             -CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccccccccc--
Confidence             47789999999999999999999999999999999999999999999999999999999999999987766666633  


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          379 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       379 ~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                         .    ...+..++|+||+++.++|++||++.|+|..
T Consensus       182 ---~----~~~~~~~~t~~E~~~~~~G~~i~~~~~~~~~  213 (213)
T 2fca_A          182 ---N----SNLEGNIMTEYEEKFSALGQPIYRAEVEWRT  213 (213)
T ss_dssp             ---G----SSCTTCCCCTTGGGSSSSSCCCEEEEEECCC
T ss_pred             ---c----ccCCCCCCcHHHHHHHHCCCCeEEEEEEECC
Confidence               1    1345678899999999999999999999863

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.97  E-value=3.9e-30  Score=242.88  Aligned_cols=180  Identities=23%  Similarity=0.353  Sum_probs=144.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH------hCCCcEEEEEcChhhhhhhhhccCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------SGITNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~------~~l~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      ++++|||||||+|.++..||+.+|+.+|+|+|+|+.+++.|++++..      .++.|++++++|+.+.++.++  ++++
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~--~~~~  123 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKGQ  123 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC--CTTC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC--CCcC
Confidence            46799999999999999999999999999999999999999988764      467899999999987545555  5789


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCC
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQG  383 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~  383 (420)
                      +|.|+++|||||++.+|+++|++++.+++.+.++|||||.|++.||+..|.+++.+.+.+++.+. .+..+     .+..
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~-~~~~~-----~~~~  197 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE-RVPLE-----DLSE  197 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE-EECGG-----GGTT
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc-ccCch-----hccc
Confidence            99999999999999999999999999999999999999999999999999999999999998543 33333     1222


Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014711          384 GWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  418 (420)
Q Consensus       384 ~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~~  418 (420)
                      .|. .+.....|+||+++.++|.++|++.|+|++.
T Consensus       198 ~~~-~~~~~~~t~~e~k~~~~G~~~~~~~f~r~~~  231 (235)
T 3ckk_A          198 DPV-VGHLGTSTEEGKKVLRNGGKNFPAIFRRIQD  231 (235)
T ss_dssp             CTT-GGGTTTSSHHHHHHHHTTCCCEEEEEEECCC
T ss_pred             Ccc-ccCCCCCCHHHHHHHHCCCCeEEEEEEECCC
Confidence            331 2334577999999999999999999999864

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.97  E-value=8.6e-30  Score=235.93  Aligned_cols=184  Identities=18%  Similarity=0.389  Sum_probs=163.9

Q ss_pred             ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc
Q 014711          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~  298 (420)
                      ..+|.+.|++ ++.+|||||||+|.++..+|+.+|+.+++|+|+|+.+++.|++++...+++|++++++|+.++ +..+ 
T Consensus        31 ~~~~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~-  107 (214)
T 1yzh_A           31 KAKWRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL-TDYF-  107 (214)
T ss_dssp             TTTHHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG-GGTS-
T ss_pred             ccCHHHHcCC-CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH-Hhhc-
Confidence            3467777875 578999999999999999999999999999999999999999999999999999999999885 3333 


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecccccc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  378 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~  378 (420)
                       +++++|.|++++|+||++.+|+++|+..+.+++.+.++|+|||.|++.||+..+.+++.+.+.++||....+..|.+  
T Consensus       108 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~~--  184 (214)
T 1yzh_A          108 -EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLH--  184 (214)
T ss_dssp             -CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG--
T ss_pred             -CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecccccc--
Confidence             46789999999999999999999999999999999999999999999999999999999999999998877777743  


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEe
Q 014711          379 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK  415 (420)
Q Consensus       379 ~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k  415 (420)
                         .    ...+..+.|+||+++.++|++||++.+++
T Consensus       185 ---~----~~~~~~~~t~~e~~~~~~g~~i~~~~~~~  214 (214)
T 1yzh_A          185 ---A----SDFEGNVMTEYEQKFSNKGQVIYRVEAEF  214 (214)
T ss_dssp             ---G----SCCCCCCCCHHHHHTGGGCCCCEEEEEEC
T ss_pred             ---c----cCCCCCCCcHHHHHHHHCCCCeEEEEEEC
Confidence               1    13456789999999999999999999874

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.95  E-value=6e-28  Score=228.68  Aligned_cols=190  Identities=17%  Similarity=0.269  Sum_probs=153.6

Q ss_pred             cccccccCC---------CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--------CCCcE
Q 014711          220 IDWSAAYHD---------PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--------GITNG  282 (420)
Q Consensus       220 ~~~~~~f~~---------~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--------~l~nv  282 (420)
                      .+|.+.|++         .++.+|||||||+|.+++.+|+.+|+.+|+|+|+|+.+++.|++++...        ++.|+
T Consensus        30 ~~w~~~f~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv  109 (246)
T 2vdv_E           30 MDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNI  109 (246)
T ss_dssp             CCGGGTCGGGBC----CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTE
T ss_pred             CCHHHHhCcccccccccCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcE
Confidence            468777765         2468999999999999999999999999999999999999999998876        78899


Q ss_pred             EEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHH
Q 014711          283 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL  362 (420)
Q Consensus       283 ~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~  362 (420)
                      +++++|+.+.++..+  .++++|.|+++|||||+|.+|.++|++++.+++.+.++|+|||.|++.||++.+.+++.+.+.
T Consensus       110 ~~~~~D~~~~l~~~~--~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  187 (246)
T 2vdv_E          110 NVLRGNAMKFLPNFF--EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLE  187 (246)
T ss_dssp             EEEECCTTSCGGGTS--CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred             EEEeccHHHHHHHhc--cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHH
Confidence            999999988555545  478999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCceeEeeccccccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014711          363 EYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  418 (420)
Q Consensus       363 ~~g~~~~~~~~D~~~~~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~~  418 (420)
                      +++++ ..+..+.     +..+| ......+.|+||+++.++|.++|.+.|+|+++
T Consensus       188 ~~~~~-~~~~~~~-----~~~d~-~~~~~~~~t~~e~k~~~~g~~~~~~~~~k~~~  236 (246)
T 2vdv_E          188 EHPLF-ERLSKEW-----EENDE-CVKIMRNATEEGKKVERKKGDKFVACFTRLPT  236 (246)
T ss_dssp             HSTTE-EECCHHH-----HHTCH-HHHHHHHSSHHHHHHHHTTCCCEEEEEEECCC
T ss_pred             hCcCe-EecCccc-----cccCc-ccccCCCCCHHHHHHHHCCCCeEEEEEEECCC
Confidence            98863 3332221     11111 00112356999999999999999999999874

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.67  E-value=1.2e-16  Score=149.36  Aligned_cols=115  Identities=17%  Similarity=0.199  Sum_probs=92.6

Q ss_pred             cccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCC-hHHHHHH---HHHhHHhCCCcEEEEEcChhhhhhhhhcc
Q 014711          224 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVN-GKLVTHC---RDSLQLSGITNGYFIATNATSTFRSIVAS  299 (420)
Q Consensus       224 ~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis-~~~i~~A---~~~~~~~~l~nv~~~~~Da~~~~~~~~~~  299 (420)
                      +.+.. .+.+|||||||+|.++..||++.|+.+|+|+|+| +.|++.|   ++++.+.+++|+.|+++|+.++ +..+  
T Consensus        19 ~~~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~--   94 (225)
T 3p2e_A           19 EIIGQ-FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFEL--   94 (225)
T ss_dssp             HHHTT-CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGG--
T ss_pred             HHhCC-CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhc--
Confidence            33443 4689999999999999999999999999999999 6666666   8888888999999999999887 3322  


Q ss_pred             CCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          300 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       300 ~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                       ...+|.++++||.|.  . +...+...++++++++++|||||+|++
T Consensus        95 -~d~v~~i~~~~~~~~--~-~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           95 -KNIADSISILFPWGT--L-LEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             -TTCEEEEEEESCCHH--H-HHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             -cCeEEEEEEeCCCcH--H-hhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence             367999999987553  2 223333446899999999999999999

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.66  E-value=1.3e-15  Score=146.21  Aligned_cols=159  Identities=13%  Similarity=0.038  Sum_probs=125.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHh-CCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~-~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||+|||+|.++..+++. .|..+++|+|+++.+++.|++++... +..|+.++++|+.+.    +  ++++||.|
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~----~--~~~~fD~V  183 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----I--SDQMYDAV  183 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----C--CSCCEEEE
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc----C--cCCCccEE
Confidence            4679999999999999999998 78999999999999999999999888 888999999999763    2  35789999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCC
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  387 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~  387 (420)
                      +++.|+|+             .+++.+.+.|||||++++.+......+.+.+.+.+.||....+.+..      ...|..
T Consensus       184 i~~~~~~~-------------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~------~~~~~~  244 (275)
T 1yb2_A          184 IADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVELM------KRRILV  244 (275)
T ss_dssp             EECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEEE------ECCCCC
T ss_pred             EEcCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEEEe------cceeEe
Confidence            99877775             78999999999999999998877677778888888888765543321      112321


Q ss_pred             CCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014711          388 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  418 (420)
Q Consensus       388 ~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~~  418 (420)
                       .....+....    ..|++.|-+.++|...
T Consensus       245 -~~~~~rp~~~----~~~~~~~li~ark~~~  270 (275)
T 1yb2_A          245 -REGATRPASD----DLTHTAFITFAIKKSG  270 (275)
T ss_dssp             -CTTCCCCGGG----GSCEEEEEEEEEECCS
T ss_pred             -cCCccccccc----cCCCcEEEEEEEehhc
Confidence             1222222222    4688889888888764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.64  E-value=2.2e-15  Score=144.54  Aligned_cols=158  Identities=11%  Similarity=0.097  Sum_probs=125.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||+|||+|.++..+++. .|..+++++|+|+.+++.|++++...++ .|+.++++|+.+.    +  ++++||.|
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~D~V  185 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----F--DEKDVDAL  185 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----C--SCCSEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc----c--cCCccCEE
Confidence            4679999999999999999999 7889999999999999999999988887 6899999999775    2  35689999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCC
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  387 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~  387 (420)
                      +++.|+||             .+++.+.+.|+|||.+++.+........+.+.+++.||....+.++..      ..|. 
T Consensus       186 ~~~~~~~~-------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~------~~~~-  245 (277)
T 1o54_A          186 FLDVPDPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLF------RPYK-  245 (277)
T ss_dssp             EECCSCGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCCC------CCEE-
T ss_pred             EECCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEEee------eeeE-
Confidence            99888776             789999999999999999988777778888889999987666655421      1121 


Q ss_pred             CCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          388 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       388 ~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                      ..+...+..+    ...|++.|.+.++|..
T Consensus       246 ~~~~~~rp~~----~~~~~~~~li~ark~~  271 (277)
T 1o54_A          246 PVPERLRPVD----RMVAHTAYMIFATKVC  271 (277)
T ss_dssp             CCTTSCEECS----CCCCCSCEEEEEEECS
T ss_pred             eccceeCCCc----cccCCCeEEEEEEecC
Confidence            1111111111    1468889988888875

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.64  E-value=6.6e-15  Score=134.36  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=105.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++..|..+++|+|+|+.+++.|++++...++.|++++++|+.+.+.     ...++|.|++
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~D~i~~  114 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-----DLPDPDRVFI  114 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-----TSCCCSEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-----cCCCCCEEEE
Confidence            46899999999999999999999999999999999999999999999999899999999976532     2367999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  366 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~  366 (420)
                      ..+.+           ....+++++.+.|||||++++.+......+.+.+.++++||
T Consensus       115 ~~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          115 GGSGG-----------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY  160 (204)
T ss_dssp             SCCTT-----------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             CCCCc-----------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence            74432           11489999999999999999987777777888999999998

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.64  E-value=2.5e-15  Score=141.82  Aligned_cols=123  Identities=15%  Similarity=0.237  Sum_probs=109.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||+|||+|.++..+++. .|..+++|+|+|+.+++.|++++...++.| +.++++|+.+.    +  ++.++|.|
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~D~v  166 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG----I--EEENVDHV  166 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC----C--CCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc----c--CCCCcCEE
Confidence            4679999999999999999999 889999999999999999999999999887 99999999864    2  46789999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcC--CceeEe
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG--KGKLVL  371 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g--~~~~~~  371 (420)
                      +++.|+||             .+++.+.+.|+|||.+++.+........+.+.+++++  |....+
T Consensus       167 ~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~  219 (255)
T 3mb5_A          167 ILDLPQPE-------------RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRT  219 (255)
T ss_dssp             EECSSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEE
T ss_pred             EECCCCHH-------------HHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEE
Confidence            99888776             7899999999999999998877777888899999998  766544

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.63  E-value=3.9e-16  Score=149.21  Aligned_cols=128  Identities=14%  Similarity=0.206  Sum_probs=97.5

Q ss_pred             cccCCCccccccCCccccccccccCCCCCCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCC
Q 014711          203 GRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGIT  280 (420)
Q Consensus       203 g~~lPgv~aL~~~~p~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~  280 (420)
                      .++.|+++.+.+..   ..+.+.+.. ++.+|||||||+|.++..|++++  |+++|+|+|+|+.|++.|++++...+..
T Consensus        47 ~rsvP~Y~~~~~~i---~~l~~~~~~-~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~  122 (261)
T 4gek_A           47 QRSVPGYSNIISMI---GMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP  122 (261)
T ss_dssp             HHHSTTHHHHHHHH---HHHHHHHCC-TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS
T ss_pred             hhcCCCHHHHHHHH---HHHHHHhCC-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC
Confidence            46677775443322   234444444 47899999999999999999984  6789999999999999999999887764


Q ss_pred             -cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          281 -NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       281 -nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                       |++|+++|+.++       +.+.+|.|++++.-.+...   .   -...+|++++++|||||.|++.
T Consensus       123 ~~v~~~~~D~~~~-------~~~~~d~v~~~~~l~~~~~---~---~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          123 TPVDVIEGDIRDI-------AIENASMVVLNFTLQFLEP---S---ERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             SCEEEEESCTTTC-------CCCSEEEEEEESCGGGSCH---H---HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEeecccccc-------cccccccceeeeeeeecCc---h---hHhHHHHHHHHHcCCCcEEEEE
Confidence             799999999876       2456999988764333211   1   1137899999999999999885

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.62  E-value=8.2e-15  Score=130.00  Aligned_cols=124  Identities=14%  Similarity=0.117  Sum_probs=104.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.++..+++.+|..+++|+|+|+.+++.|++++...++. |+ ++++|+.+.++    ..+++||.|+
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~----~~~~~~D~i~   99 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD----DVPDNPDVIF   99 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG----GCCSCCSEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh----ccCCCCCEEE
Confidence            467899999999999999999999999999999999999999999988887 89 89999865432    1237899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +.++..+            ..+++.+.+.|||||++++.+..........+.++++++....
T Consensus       100 ~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (178)
T 3hm2_A          100 IGGGLTA------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS  149 (178)
T ss_dssp             ECC-TTC------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEE
T ss_pred             ECCcccH------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEE
Confidence            8765443            2689999999999999999887777777788889988865543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.61  E-value=8.8e-15  Score=140.30  Aligned_cols=138  Identities=18%  Similarity=0.234  Sum_probs=108.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++.+|..+++|+|+|+.+++.|++++...+++|++++++|+.+.+      ++++||.|++
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~fD~Iv~  182 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL------AGQQFAMIVS  182 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG------TTCCEEEEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc------ccCCccEEEE
Confidence            4678999999999999999999999999999999999999999999999889999999997652      3568999999


Q ss_pred             eCCCCCCCCcc---------hhhh--------hhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEee
Q 014711          310 QCPNPDFNRPE---------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV  372 (420)
Q Consensus       310 ~fpdp~~k~~~---------~k~R--------l~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~  372 (420)
                      +.|-.+....|         +...        .....+++.+.+.|+|||++++.+... ..+.+.+.++++||..+.+.
T Consensus       183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~l~~~Gf~~v~~~  261 (276)
T 2b3t_A          183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-QGEAVRQAFILAGYHDVETC  261 (276)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-CHHHHHHHHHHTTCTTCCEE
T ss_pred             CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch-HHHHHHHHHHHCCCcEEEEE
Confidence            74332211111         0001        123578999999999999999987543 35668888999998766555


Q ss_pred             cc
Q 014711          373 QD  374 (420)
Q Consensus       373 ~D  374 (420)
                      .|
T Consensus       262 ~d  263 (276)
T 2b3t_A          262 RD  263 (276)
T ss_dssp             EC
T ss_pred             ec
Confidence            55

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.60  E-value=1.2e-14  Score=136.40  Aligned_cols=127  Identities=16%  Similarity=0.095  Sum_probs=101.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.+++.+|+..|+.+|+|+|+|+.+++.|++++...+++|++++++|+.++...  +..+++||.|++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~V~~  147 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR--KDVRESYDIVTA  147 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--TTTTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc--ccccCCccEEEE
Confidence            367899999999999999999889999999999999999999999999998999999999876210  001578999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC--cHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td--~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      .....            ...+++.+.++|||||.|++...  ...-...+.+.++++|+....
T Consensus       148 ~~~~~------------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~  198 (240)
T 1xdz_A          148 RAVAR------------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELEN  198 (240)
T ss_dssp             ECCSC------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEE
T ss_pred             eccCC------------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeE
Confidence            74211            14899999999999999998643  233344566778888876543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.60  E-value=2.1e-14  Score=131.81  Aligned_cols=122  Identities=15%  Similarity=0.119  Sum_probs=103.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.++..+|+.  ..+++|+|+|+.+++.|++++...+++ |++++++|+.+.++     ....+|.|+
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-----~~~~~D~v~  127 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-----DLPLPEAVF  127 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-----TSCCCSEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-----cCCCCCEEE
Confidence            4679999999999999999998  789999999999999999999999998 99999999988532     234799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +....            .. ++++++.+.|||||++++.+........+.+.+++.++....+
T Consensus       128 ~~~~~------------~~-~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i  177 (204)
T 3njr_A          128 IGGGG------------SQ-ALYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRI  177 (204)
T ss_dssp             ECSCC------------CH-HHHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred             ECCcc------------cH-HHHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEE
Confidence            76311            11 3899999999999999999887788888999999998765443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.60  E-value=1e-14  Score=138.25  Aligned_cols=127  Identities=17%  Similarity=0.174  Sum_probs=103.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|..++.+|..+|+.+|+|+|+|+.+++.|++++.+.+++|++++++|+.++....  ..+++||.|++
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~--~~~~~fD~I~s  157 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA--GHREAYARAVA  157 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST--TTTTCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc--ccCCCceEEEE
Confidence            4678999999999999999999999999999999999999999999999999999999998873110  02478999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC--cHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td--~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ....++            +.+++.+.++|||||+|++...  .......+.+.++.+|+....
T Consensus       158 ~a~~~~------------~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~  208 (249)
T 3g89_A          158 RAVAPL------------CVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGE  208 (249)
T ss_dssp             ESSCCH------------HHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEE
T ss_pred             CCcCCH------------HHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEE
Confidence            632221            4799999999999999988653  234445567777888877544

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.59  E-value=1.2e-14  Score=136.92  Aligned_cols=159  Identities=12%  Similarity=0.035  Sum_probs=122.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHh-CCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~-~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||+|||+|.++..+++. .|..+++++|+|+.+++.|++++... +..|+.+.++|+.+. +  +  +++++|.|
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~--~--~~~~~D~v  170 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-E--L--EEAAYDGV  170 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-C--C--CTTCEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-C--C--CCCCcCEE
Confidence            4679999999999999999998 78899999999999999999999887 877999999999775 1  2  46789999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCC
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  387 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~  387 (420)
                      +++.|+||             .+++.+.++|+|||++++.+........+.+.+++.||....+.+...      ..|..
T Consensus       171 ~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~------~~~~~  231 (258)
T 2pwy_A          171 ALDLMEPW-------------KVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLEVGW------REWEV  231 (258)
T ss_dssp             EEESSCGG-------------GGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEEEEE------EEEEE
T ss_pred             EECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEEeee------eEeee
Confidence            99888776             789999999999999999988777777888888888887654432100      01210


Q ss_pred             CCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          388 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       388 ~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                       .+...+..    ....|++.|-+.++|..
T Consensus       232 -~~~~~rp~----~~~~~~~~~l~~ark~~  256 (258)
T 2pwy_A          232 -RLPVAHPR----FQQVGHTAFLVALRRWK  256 (258)
T ss_dssp             -ETTEEEEC----SSCCCCCCEEEEEEECC
T ss_pred             -ccCccCCC----CccCCcceEEEEEEecC
Confidence             00010001    01367888988888875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.58  E-value=6.6e-15  Score=138.25  Aligned_cols=133  Identities=12%  Similarity=-0.016  Sum_probs=101.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++..|. +++|||+|+.+++.|++++...+ .+++++++|+.+.... +  ++++||.|++
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~-~--~~~~FD~i~~  134 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT-L--PDGHFDGILY  134 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG-S--CTTCEEEEEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc-c--cccCCceEEE
Confidence            4789999999999999999988774 79999999999999999987665 4799999999887432 2  5789999965


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe------------C--cHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS------------D--IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t------------d--~~~~~~~~~~~l~~~g~~~~~  370 (420)
                         |++....+..+......++++++|+|||||+|.+..            +  ...+.+.....|.+.||....
T Consensus       135 ---D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~  206 (236)
T 3orh_A          135 ---DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  206 (236)
T ss_dssp             ---CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGG
T ss_pred             ---eeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEE
Confidence               566544444444444689999999999999998742            1  012334455567788886543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.57  E-value=5.4e-14  Score=126.01  Aligned_cols=113  Identities=16%  Similarity=0.136  Sum_probs=86.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+|+.  ..+|+|+|+|+.+++.|++++...+++|+++++.|+..+ ..+   .+++||.|++
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l-~~~---~~~~fD~v~~   95 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENL-DHY---VREPIRAAIF   95 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGG-GGT---CCSCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHH-Hhh---ccCCcCEEEE
Confidence            4689999999999999999988  789999999999999999999999999999999888765 222   3678999987


Q ss_pred             eCCC-CCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpd-p~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +++- |...............+++++.+.|||||++++..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            6321 11000000001122478899999999999999865

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.57  E-value=1.3e-14  Score=133.60  Aligned_cols=132  Identities=11%  Similarity=0.123  Sum_probs=96.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHH----HhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~----~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.+.+    +....+++|+.|+++|+.++     +..+++ |
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-----~~~~~~-d  100 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-----PPLSGV-G  100 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-----CSCCCE-E
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-----CCCCCC-C
Confidence            4678999999999999999999999999999999998886433    33446778999999999885     224566 8


Q ss_pred             EEEEeCCCCCCCCc-chhhhhhHHHHHHHHHhhccCCeEEEEEeC-----------------cHHHH-HHHHHHHHHcCC
Q 014711          306 LVSIQCPNPDFNRP-EHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----------------IEEVM-LRMKQQFLEYGK  366 (420)
Q Consensus       306 ~i~~~fpdp~~k~~-~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-----------------~~~~~-~~~~~~l~~~g~  366 (420)
                      .+++.++  |.... |+..  -...+++++.++|||||.|++...                 ...+. +.+.+.+.+.||
T Consensus       101 ~v~~~~~--~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf  176 (218)
T 3mq2_A          101 ELHVLMP--WGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGW  176 (218)
T ss_dssp             EEEEESC--CHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEcc--chhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCC
Confidence            8877654  21110 0000  014899999999999999999642                 12222 336678888998


Q ss_pred             ceeEe
Q 014711          367 GKLVL  371 (420)
Q Consensus       367 ~~~~~  371 (420)
                      ....+
T Consensus       177 ~i~~~  181 (218)
T 3mq2_A          177 KLADC  181 (218)
T ss_dssp             EEEEE
T ss_pred             Cceee
Confidence            76543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.56  E-value=4.6e-14  Score=134.92  Aligned_cols=124  Identities=17%  Similarity=0.212  Sum_probs=106.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHh-C--CCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLS-G--ITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~-~--l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      .+.+|||+|||+|.++..+++. .|..+++++|+|+.+++.|++++... +  ..|+.++++|+.+..   +  +++++|
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~---~--~~~~~D  173 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE---L--PDGSVD  173 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC---C--CTTCEE
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC---C--CCCcee
Confidence            4679999999999999999996 57899999999999999999999887 6  678999999998751   2  467899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHH-cCCceeEe
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE-YGKGKLVL  371 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~-~g~~~~~~  371 (420)
                      .|+++.|+||             .+++.+.++|+|||++++.+....+...+.+.+.+ .+|....+
T Consensus       174 ~v~~~~~~~~-------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~  227 (280)
T 1i9g_A          174 RAVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRA  227 (280)
T ss_dssp             EEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEE
T ss_pred             EEEECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEE
Confidence            9999988887             78999999999999999998887777778888877 66654443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.55  E-value=1.7e-14  Score=131.67  Aligned_cols=123  Identities=17%  Similarity=0.214  Sum_probs=102.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.++..+++ .+..+++|+|+|+.+++.|++++...++.|++++++|+.+.       .+++||.|++
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------~~~~fD~i~~  131 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-------VDGKFDLIVA  131 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-------CCSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-------CCCCceEEEE
Confidence            468999999999999999887 46779999999999999999999999988899999999765       3678999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +.+-.      +     ...+++++.+.|+|||++++.+-.....+.+.+.+++.|+.....
T Consensus       132 ~~~~~------~-----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~  182 (205)
T 3grz_A          132 NILAE------I-----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK  182 (205)
T ss_dssp             ESCHH------H-----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred             CCcHH------H-----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence            74321      1     147899999999999999997544555677888999999876554

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.55  E-value=6.3e-14  Score=126.87  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=90.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|++++...++ .|++++++|+.++. ..   .+++||.|
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~---~~~~fD~v   97 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD-KY---IDCPVKAV   97 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG-GT---CCSCEEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh-hh---ccCCceEE
Confidence            46799999999999999999985 778999999999999999999999888 68999999998762 22   36789999


Q ss_pred             EEeCCC-CCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          308 SIQCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       308 ~~~fpd-p~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +++.|- |..............++++++.++|||||++++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            987533 21111111111122479999999999999999875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.55  E-value=2.9e-14  Score=131.01  Aligned_cols=129  Identities=10%  Similarity=0.118  Sum_probs=103.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|++++...+++|+.++++|+.++     +..+++||.|+
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~  111 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI-----PLPDNTVDFIF  111 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC-----SSCSSCEEEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC-----CCCCCCeeEEE
Confidence            46799999999999999999996 8899999999999999999999999988999999999875     12578899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----------H--HHHHHHHHHHHHcCCceeEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----------E--EVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----------~--~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +...-.+..+        ...+++++.++|||||.+++..-.          .  ...+++.+.+++.||.....
T Consensus       112 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  178 (219)
T 3dh0_A          112 MAFTFHELSE--------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV  178 (219)
T ss_dssp             EESCGGGCSS--------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred             eehhhhhcCC--------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence            8743332211        137999999999999999986311          0  01356788899999876543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.55  E-value=6.1e-14  Score=130.07  Aligned_cols=133  Identities=19%  Similarity=0.252  Sum_probs=102.4

Q ss_pred             CCCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+||| +|.++..+++.. ..+++|+|+|+.+++.|++++...++ |++++++|+..+ .. +  .+++||.|+
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~-~~-~--~~~~fD~I~  128 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGII-KG-V--VEGTFDVIF  128 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSS-TT-T--CCSCEEEEE
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhh-hh-c--ccCceeEEE
Confidence            46899999999 999999999986 78999999999999999999999888 899999997544 11 2  358899999


Q ss_pred             EeCCCCCCCCcch-----hh--------hhhHHHHHHHHHhhccCCeEEEEEeC-cHHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRPEH-----RW--------RMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~~~-----k~--------Rl~~~~~l~~i~~~LkpgG~l~~~td-~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ++  .|++.....     ..        ......+++.+.+.|||||++++.+. .....+.+.+.++++|+....
T Consensus       129 ~n--pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~  202 (230)
T 3evz_A          129 SA--PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKD  202 (230)
T ss_dssp             EC--CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             EC--CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEE
Confidence            87  333221110     00        01125899999999999999998754 345667788899999986543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.55  E-value=4.4e-14  Score=129.02  Aligned_cols=103  Identities=13%  Similarity=0.210  Sum_probs=87.4

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      .+|||||||+|.++..+++. |..+++|+|+|+.+++.|++++...++. |++++++|+.++     +.++++||.|+++
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~~  118 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-----PIEDNYADLIVSR  118 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-----SSCTTCEEEEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-----CCCcccccEEEEC
Confidence            39999999999999999998 8899999999999999999999988875 799999999875     2257899999987


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ..-.+...        ...+++++.++|||||.+++..
T Consensus       119 ~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          119 GSVFFWED--------VATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             SCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chHhhccC--------HHHHHHHHHHhCCCCCEEEEEe
Confidence            54333211        1379999999999999999863

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.54  E-value=4.9e-14  Score=134.32  Aligned_cols=106  Identities=15%  Similarity=0.247  Sum_probs=91.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.+|..+++|+|+|+.+++.|++++...+++|+.++++|+.++     +.++++||.|++
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  111 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL-----PFEDSSFDHIFV  111 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC-----CSCTTCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC-----CCCCCCeeEEEE
Confidence            468999999999999999999999999999999999999999999999999999999999875     225789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-.+..+.        ..+++.+.++|||||++++..
T Consensus       112 ~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          112 CFVLEHLQSP--------EEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             echhhhcCCH--------HHHHHHHHHHcCCCcEEEEEE
Confidence            7533332111        379999999999999999864

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.54  E-value=5.6e-14  Score=130.55  Aligned_cols=165  Identities=11%  Similarity=0.079  Sum_probs=111.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.+|..+++|+|+|+.+++.|++++...+  |+.++++|+.++.      .+++||.|++
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~------~~~~fD~v~~  115 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYD------FEEKYDMVVS  115 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCC------CCSCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccC------CCCCceEEEE
Confidence            4689999999999999999999999999999999999999999876554  8999999998762      2478999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC----cHHHHH----HHHHHHHHcCCceeEeeccccccccC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IEEVML----RMKQQFLEYGKGKLVLVQDECDTKTN  381 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td----~~~~~~----~~~~~l~~~g~~~~~~~~D~~~~~~~  381 (420)
                      ...-.+...      ....++++++.++|||||.+++.+-    ......    .....+...++...... ..+    .
T Consensus       116 ~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~  184 (234)
T 3dtn_A          116 ALSIHHLED------EDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIA-AGY----E  184 (234)
T ss_dssp             ESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHH-TTC-----
T ss_pred             eCccccCCH------HHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHH-HHH----H
Confidence            853332211      1113689999999999999998651    111111    11222233333221110 000    0


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014711          382 QGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  416 (420)
Q Consensus       382 ~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~  416 (420)
                      ..   .........++.+.+.+.|+..-++.++..
T Consensus       185 ~~---~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~  216 (234)
T 3dtn_A          185 RS---KLDKDIEMNQQLNWLKEAGFRDVSCIYKYY  216 (234)
T ss_dssp             ------CCCCCBHHHHHHHHHHTTCEEEEEEEEET
T ss_pred             hc---ccccccCHHHHHHHHHHcCCCceeeeeeec
Confidence            00   011123345678889999999888877653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.54  E-value=7.2e-14  Score=132.69  Aligned_cols=133  Identities=17%  Similarity=0.276  Sum_probs=102.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +.+|||+|||+|.+++.+|++.+. +++|+|+++.+++.|++++..+++. |++++++|+.++.. .+  ++++||.|++
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~-~~--~~~~fD~Ii~  125 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD-LI--PKERADIVTC  125 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG-TS--CTTCEEEEEE
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh-hh--ccCCccEEEE
Confidence            678999999999999999999765 9999999999999999999999987 59999999998732 22  3689999999


Q ss_pred             eCCCCCCCC-c-------------chhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNR-P-------------EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~-~-------------~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +  .|++.. .             ++..+.....+++.+.++|||||+|++...... ..++.+.+.++++....
T Consensus       126 n--pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~l~~~~~~~~~  197 (259)
T 3lpm_A          126 N--PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER-LLDIIDIMRKYRLEPKR  197 (259)
T ss_dssp             C--CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT-HHHHHHHHHHTTEEEEE
T ss_pred             C--CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH-HHHHHHHHHHCCCceEE
Confidence            7  343222 0             000011225799999999999999999875544 45577888888876543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.54  E-value=1.9e-13  Score=128.17  Aligned_cols=128  Identities=13%  Similarity=0.083  Sum_probs=102.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.++..+|+. .|+.+|+|+|+|+.|++.+++++.+  ..|+..+.+|+.... .+ +....++|.|+
T Consensus        77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~--~~ni~~V~~d~~~p~-~~-~~~~~~vDvVf  152 (233)
T 4df3_A           77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--RRNIFPILGDARFPE-KY-RHLVEGVDGLY  152 (233)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT--CTTEEEEESCTTCGG-GG-TTTCCCEEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh--hcCeeEEEEeccCcc-cc-ccccceEEEEE
Confidence            5899999999999999999998 5999999999999999999998765  459999999998752 21 22467899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---------CcHHHHHHHHHHHHHcCCceeEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---------d~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ..++.|+          ....++.++.+.|||||++++..         +.+..+....+.|++.||...+.
T Consensus       153 ~d~~~~~----------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~  214 (233)
T 4df3_A          153 ADVAQPE----------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDV  214 (233)
T ss_dssp             ECCCCTT----------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred             EeccCCh----------hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEE
Confidence            8766664          12368999999999999998852         22334556677888999987543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.54  E-value=5.8e-14  Score=132.12  Aligned_cols=103  Identities=16%  Similarity=0.193  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++..+. +++|+|+|+.+++.|++++.   ..++.++++|+.++     +.++++||.|++
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~-----~~~~~~fD~v~~  114 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDI-----AIEPDAYNVVLS  114 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGC-----CCCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhC-----CCCCCCeEEEEE
Confidence            4689999999999999999998654 99999999999999998865   46899999999875     224789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ...-.+..+        ...+++++.++|||||.+++.+.
T Consensus       115 ~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          115 SLALHYIAS--------FDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             ESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhhhhhh--------HHHHHHHHHHHcCCCcEEEEEeC
Confidence            753322211        13899999999999999999753

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.53  E-value=3.2e-15  Score=136.19  Aligned_cols=140  Identities=14%  Similarity=0.155  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++.+|+.+++|+|+|+.+++.|++++...+. |++++++|+.+.++... ...++||.|++
T Consensus        30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~-~~~~~fD~i~~  107 (215)
T 4dzr_A           30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERA-ERGRPWHAIVS  107 (215)
T ss_dssp             TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHH-HTTCCBSEEEE
T ss_pred             CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhh-hccCcccEEEE
Confidence            46899999999999999999999999999999999999999999988887 89999999987532110 02378999998


Q ss_pred             eCCCCCCCCc--ch----------hhhh--------hHHHHHHHHHhhccCCeE-EEEEeCcHHHHHHHHHHHH--HcCC
Q 014711          310 QCPNPDFNRP--EH----------RWRM--------VQRSLVEAVSDLLVHDGK-VFLQSDIEEVMLRMKQQFL--EYGK  366 (420)
Q Consensus       310 ~fpdp~~k~~--~~----------k~Rl--------~~~~~l~~i~~~LkpgG~-l~~~td~~~~~~~~~~~l~--~~g~  366 (420)
                      +.|  ++...  ++          ...+        ....+++.+.++|||||+ +++.+.. ...+.+.+.+.  +.+|
T Consensus       108 npp--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~l~~~~~gf  184 (215)
T 4dzr_A          108 NPP--YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH-NQADEVARLFAPWRERG  184 (215)
T ss_dssp             CCC--CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-SCHHHHHHHTGGGGGGT
T ss_pred             CCC--CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-ccHHHHHHHHHHhhcCC
Confidence            733  32111  10          0000        115889999999999999 7776643 33556777788  7887


Q ss_pred             ceeEeecc
Q 014711          367 GKLVLVQD  374 (420)
Q Consensus       367 ~~~~~~~D  374 (420)
                      ....+..|
T Consensus       185 ~~~~~~~~  192 (215)
T 4dzr_A          185 FRVRKVKD  192 (215)
T ss_dssp             EECCEEEC
T ss_pred             ceEEEEEe
Confidence            65554444

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.53  E-value=1e-13  Score=130.40  Aligned_cols=127  Identities=13%  Similarity=0.086  Sum_probs=102.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++..|. +++|+|+|+.+++.|++++...++.+ ++++++|+.++     +.++++||.|+
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~  119 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-----PFQNEELDLIW  119 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-----CCCCCCEEEEE
Confidence            4679999999999999999999875 99999999999999999999999876 99999999765     22578999999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-------H---H----------HHHHHHHHHHHcCCce
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------E---E----------VMLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-------~---~----------~~~~~~~~l~~~g~~~  368 (420)
                      +...-.+. .        ...+++.+.++|||||++++.+-.       .   .          ..++..+.+++.||..
T Consensus       120 ~~~~l~~~-~--------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  190 (257)
T 3f4k_A          120 SEGAIYNI-G--------FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTP  190 (257)
T ss_dssp             EESCSCCC-C--------HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEE
T ss_pred             ecChHhhc-C--------HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeE
Confidence            88544432 1        147999999999999999987511       0   0          1245677888999876


Q ss_pred             eEe
Q 014711          369 LVL  371 (420)
Q Consensus       369 ~~~  371 (420)
                      +.+
T Consensus       191 v~~  193 (257)
T 3f4k_A          191 TAH  193 (257)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=2.7e-13  Score=120.19  Aligned_cols=119  Identities=14%  Similarity=0.157  Sum_probs=101.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++  +..+++|+|+|+.+++.|++++...+++|++++++|+.+.+      +++++|.|++
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~i~~  106 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVL------DKLEFNKAFI  106 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHG------GGCCCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccc------cCCCCcEEEE
Confidence            467999999999999999998  78999999999999999999999999889999999998742      2468999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +.+      .+      ...+++.+.+.  |||.+++.+........+.+.++++|+....
T Consensus       107 ~~~------~~------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  153 (183)
T 2yxd_A          107 GGT------KN------IEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDA  153 (183)
T ss_dssp             CSC------SC------HHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCc------cc------HHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEE
Confidence            755      11      14788888888  9999999887777788899999999975543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.53  E-value=4.8e-14  Score=132.67  Aligned_cols=127  Identities=17%  Similarity=0.220  Sum_probs=99.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++.+ +.+++|+|+|+.+++.|++++...++. |+.++++|+.++     + .+++||.|+
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~V~  108 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-----V-ANEKCDVAA  108 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-----C-CSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC-----C-cCCCCCEEE
Confidence            46799999999999999999987 679999999999999999999988885 899999999876     2 267899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-------HHH--------------HHHHHHHHHHcCCc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EEV--------------MLRMKQQFLEYGKG  367 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-------~~~--------------~~~~~~~l~~~g~~  367 (420)
                      +...-.+..+        ...+|+++.++|||||++++....       ..+              ..++.+.+++.||.
T Consensus       109 ~~~~~~~~~~--------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  180 (256)
T 1nkv_A          109 CVGATWIAGG--------FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYD  180 (256)
T ss_dssp             EESCGGGTSS--------SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBC
T ss_pred             ECCChHhcCC--------HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCe
Confidence            8532221111        138999999999999999986311       111              14577888899987


Q ss_pred             eeEe
Q 014711          368 KLVL  371 (420)
Q Consensus       368 ~~~~  371 (420)
                      .+.+
T Consensus       181 ~~~~  184 (256)
T 1nkv_A          181 VVEM  184 (256)
T ss_dssp             CCEE
T ss_pred             eEEE
Confidence            6543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.52  E-value=8.8e-14  Score=124.38  Aligned_cols=120  Identities=13%  Similarity=0.225  Sum_probs=98.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc--EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n--v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++...+++|  ++++++|+.+.+      .++++|.|
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v  123 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV------KDRKYNKI  123 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC------TTSCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc------ccCCceEE
Confidence            4679999999999999999988  7899999999999999999999889887  999999997752      36789999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHc
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  364 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~  364 (420)
                      +++.  |++..   .  -....+++.+.+.|+|||.+++.+.......++.+.+++.
T Consensus       124 ~~~~--~~~~~---~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  173 (194)
T 1dus_A          124 ITNP--PIRAG---K--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV  173 (194)
T ss_dssp             EECC--CSTTC---H--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred             EECC--Ccccc---h--hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH
Confidence            9863  33111   0  1124799999999999999999887766666677777776

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.52  E-value=5.6e-14  Score=131.55  Aligned_cols=156  Identities=15%  Similarity=0.158  Sum_probs=117.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.++..+++.  ..+++++|+|+.+++.|+++....++ .|+.++++|+.+..   +  .+..+|.|+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~--~~~~~D~v~  163 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE---V--PEGIFHAAF  163 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC---C--CTTCBSEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc---c--CCCcccEEE
Confidence            4679999999999999999998  78999999999999999999988887 68999999997752   1  256799999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE  388 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~  388 (420)
                      ++.|+|+             .+++.+.+.|+|||++++.+....+...+.+.+.+. |......+...    +  .|. .
T Consensus       164 ~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~~----~--~~~-~  222 (248)
T 2yvl_A          164 VDVREPW-------------HYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FGNLEVVEILH----R--HYK-T  222 (248)
T ss_dssp             ECSSCGG-------------GGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EEEEEEEEEEE----E--EEC-C
T ss_pred             ECCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCcceEEEeee----e--Eee-c
Confidence            9877665             788999999999999999998777777788877776 54443322210    0  121 1


Q ss_pred             CCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          389 NSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       389 ~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                      .+...+..+    ...|++.|-+.++|++
T Consensus       223 ~~~~~~~~~----~~~~~~~~l~~~rk~~  247 (248)
T 2yvl_A          223 ISERFRPED----QMVAHTAYLVFGRKLK  247 (248)
T ss_dssp             CGGGCCBCS----EEECCSCEEEEEEECC
T ss_pred             ccCccCCCc----cCCCccEEEEEEEecc
Confidence            111111111    1467888988888864

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.52  E-value=1.5e-13  Score=128.13  Aligned_cols=126  Identities=10%  Similarity=0.061  Sum_probs=97.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.++..+++.+ |..+++|+|+|+.+++.+.+++...  .|+.++++|+.+...  ++..+++||.|+
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~--~~~~~~~~D~V~  152 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHK--YRMLIAMVDVIF  152 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGG--GGGGCCCEEEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhh--hcccCCcEEEEE
Confidence            46799999999999999999986 7889999999999998888887765  689999999987421  122367899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH----------HHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----------VMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~----------~~~~~~~~l~~~g~~~~~  370 (420)
                      ++.+.|+          ....++.++.+.|||||.+++.+....          +..+ .+.+++.||....
T Consensus       153 ~~~~~~~----------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~  213 (233)
T 2ipx_A          153 ADVAQPD----------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQE  213 (233)
T ss_dssp             ECCCCTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEE
T ss_pred             EcCCCcc----------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEE
Confidence            9766443          112568889999999999999653321          3333 5677788887654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.51  E-value=1.7e-13  Score=127.68  Aligned_cols=126  Identities=12%  Similarity=0.073  Sum_probs=95.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.++..+|+.+|..+|+|+|+|+.+++.|++++...  .|+.++++|+.+.. .+.+ ...+||.|+.
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~-~~~~-~~~~~D~v~~  149 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQ-EYAN-IVEKVDVIYE  149 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGG-GGTT-TSCCEEEEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcc-cccc-cCccEEEEEE
Confidence            467899999999999999999988889999999999999999987654  78999999998731 1122 1368999986


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-----c----HH-HHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----I----EE-VMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-----~----~~-~~~~~~~~l~~~g~~~~~  370 (420)
                      ..++|-          ....+++.+.+.|||||++++...     .    .. +.+++. .+.+.||....
T Consensus       150 ~~~~~~----------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~  209 (230)
T 1fbn_A          150 DVAQPN----------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVD  209 (230)
T ss_dssp             CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEE
T ss_pred             ecCChh----------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEE
Confidence            554441          123789999999999999998521     1    11 224444 78888876544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.51  E-value=8e-14  Score=132.82  Aligned_cols=132  Identities=14%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH---hCCC-cEEEEEcChhhhhhhhh--ccCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL---SGIT-NGYFIATNATSTFRSIV--ASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~---~~l~-nv~~~~~Da~~~~~~~~--~~~~~~  303 (420)
                      .+.+|||+|||+|.+++.+++++|..+++|+|+++.+++.|++++..   +++. ++.++++|+.+......  ...+++
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            35789999999999999999999999999999999999999999988   7776 59999999988643210  014678


Q ss_pred             EeEEEEeCCCCCCCCc-----ch-------hhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHc
Q 014711          304 LILVSIQCPNPDFNRP-----EH-------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  364 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~-----~~-------k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~  364 (420)
                      ||.|+++  .|++...     ..       ........+++.+.++|||||+|++...... ..++.+.+.+.
T Consensus       116 fD~Vv~n--PPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~l~~~  185 (260)
T 2ozv_A          116 FHHVIMN--PPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS-VAEIIAACGSR  185 (260)
T ss_dssp             EEEEEEC--CCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG-HHHHHHHHTTT
T ss_pred             cCEEEEC--CCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH-HHHHHHHHHhc
Confidence            9999997  3443221     00       0011235899999999999999999887654 45567777664

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.51  E-value=1.1e-13  Score=124.76  Aligned_cols=109  Identities=11%  Similarity=0.090  Sum_probs=88.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++++...++.|++++++|+.++... +  .+++||.|++
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~--~~~~fD~i~~  119 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA-G--TTSPVDLVLA  119 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH-C--CSSCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh-c--cCCCccEEEE
Confidence            4689999999999999988875 5668999999999999999999999998999999999987432 2  3678999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHh--hccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~--~LkpgG~l~~~td  349 (420)
                      +.  |+.... .    ...+++..+.+  +|+|||.+++.+.
T Consensus       120 ~~--p~~~~~-~----~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          120 DP--PYNVDS-A----DVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             CC--CTTSCH-H----HHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             CC--CCCcch-h----hHHHHHHHHHhcCccCCCeEEEEEec
Confidence            63  332110 0    12478888988  9999999999874

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.51  E-value=1.1e-13  Score=136.55  Aligned_cols=120  Identities=14%  Similarity=0.130  Sum_probs=97.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhC-----------CCcEEEEEcChhhhhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSG-----------ITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~-----------l~nv~~~~~Da~~~~~~~~  297 (420)
                      .+.+|||+|||+|.++..+++. .|+.+++|+|+++.+++.|++++...+           ..|++++++|+.+.... +
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~-~  183 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED-I  183 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc-c
Confidence            4679999999999999999998 588999999999999999999987643           35899999999875311 2


Q ss_pred             ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcC
Q 014711          298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG  365 (420)
Q Consensus       298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g  365 (420)
                        ++++||.|+++.++||             .+++.+.++|+|||.|++.+..........+.+.+++
T Consensus       184 --~~~~fD~V~~~~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~  236 (336)
T 2b25_A          184 --KSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCE  236 (336)
T ss_dssp             ------EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHT
T ss_pred             --CCCCeeEEEECCCCHH-------------HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Confidence              3568999999888887             5789999999999999998877777777777777543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.51  E-value=4.9e-14  Score=135.67  Aligned_cols=122  Identities=13%  Similarity=0.109  Sum_probs=101.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.+++.+|+..+. +|+|+|+|+.+++.|++++..+++.| ++++++|+.++.      .+.+||.|+
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~------~~~~fD~Vi  197 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------GENIADRIL  197 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------CCSCEEEEE
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc------ccCCccEEE
Confidence            3689999999999999999999765 89999999999999999999999886 999999998863      267899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc------HHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~------~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ++.|...            ..++..+.++|||||.+++.+..      ....+.+.+.+++.|+....
T Consensus       198 ~~~p~~~------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          198 MGYVVRT------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             ECCCSSG------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             ECCchhH------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence            8643211            26889999999999999997643      24556778888898887543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.51  E-value=1.3e-13  Score=133.39  Aligned_cols=101  Identities=10%  Similarity=0.095  Sum_probs=85.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..++.+.++.+|+|+|+|+++++.|++++.+.++.|++|+++|+.++       ++++||.|++
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l-------~d~~FDvV~~  194 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI-------DGLEFDVLMV  194 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG-------GGCCCSEEEE
T ss_pred             CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC-------CCCCcCEEEE
Confidence            478999999999988766555668999999999999999999999998988899999999875       2578999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-|     .      ..++++++.+.|||||+|++..
T Consensus       195 ~a~~~-----d------~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          195 AALAE-----P------KRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             CTTCS-----C------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCcc-----C------HHHHHHHHHHHcCCCcEEEEEc
Confidence            64311     1      1389999999999999999976

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.51  E-value=6.4e-13  Score=118.51  Aligned_cols=121  Identities=15%  Similarity=0.249  Sum_probs=102.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||+|||+|.++..+++..  .+++|+|+|+.+++.|++++...++ .++.++++|+.+.++     ...++|.|+
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~D~v~  105 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC-----KIPDIDIAV  105 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT-----TSCCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc-----cCCCCCEEE
Confidence            46799999999999999999986  8999999999999999999998888 789999999977421     125899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      +..+.++     .      ..+++.+.+.|+|||.+++.+........+.+.++++||..
T Consensus       106 ~~~~~~~-----~------~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~  154 (192)
T 1l3i_A          106 VGGSGGE-----L------QEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDV  154 (192)
T ss_dssp             ESCCTTC-----H------HHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCC
T ss_pred             ECCchHH-----H------HHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCce
Confidence            8743221     1      48999999999999999998877777788899999999843

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.51  E-value=9.8e-14  Score=127.63  Aligned_cols=107  Identities=10%  Similarity=0.051  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-----cEEEEEcChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-----NGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-----nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      .+.+|||||||+|.++..+++..|..+++|+|+|+.+++.|++++...+++     |+.++++|+...     +..+++|
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~f  103 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-----DKRFHGY  103 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-----CGGGCSC
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-----cccCCCc
Confidence            467999999999999999999988899999999999999999998877765     799999998543     1135789


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |.|++...-.+....      ....+++.+.++|||||.+++.
T Consensus       104 D~v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A          104 DAATVIEVIEHLDLS------RLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             SEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEEEE
T ss_pred             CEEeeHHHHHcCCHH------HHHHHHHHHHHHcCCCEEEEEc
Confidence            999987432221110      1147999999999999976654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.51  E-value=7.4e-14  Score=132.05  Aligned_cols=103  Identities=17%  Similarity=0.290  Sum_probs=87.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++..+  +++|+|+|+.+++.|++++...+++|+.++++|+.++     ++++++||.|++
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-----~~~~~~fD~V~~  109 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-----PFTDERFHIVTC  109 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-----CCCCCCEEEEEE
Confidence            468999999999999999999864  8999999999999999999988988999999999875     225789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++.-.|..+.        ..+++++.++|||||+|++.
T Consensus       110 ~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          110 RIAAHHFPNP--------ASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhHhcCCH--------HHHHHHHHHHcCCCCEEEEE
Confidence            8544332211        38999999999999999985

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.51  E-value=4.1e-13  Score=123.89  Aligned_cols=105  Identities=13%  Similarity=0.095  Sum_probs=82.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+|+..+..+|+|+|+|+.+++.+.+++.+.  .|+.++++|+... ..+.+ ..++||.|++
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~-~~~~~-~~~~fD~V~~  132 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKP-WKYSG-IVEKVDLIYQ  132 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCG-GGTTT-TCCCEEEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCc-hhhcc-cccceeEEEE
Confidence            467999999999999999999988789999999999988777766543  5899999999764 11111 2478999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +.++|.          ....++++++++|||||+|++..
T Consensus       133 ~~~~~~----------~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          133 DIAQKN----------QIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccChh----------HHHHHHHHHHHHhCCCCEEEEEE
Confidence            754442          11246899999999999999974

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.50  E-value=1.9e-13  Score=127.69  Aligned_cols=103  Identities=18%  Similarity=0.282  Sum_probs=88.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..+|+..|+.+++|+|+++.+++.|++++...++. |++++++|+.+.++..   .+++||.|+
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~fD~V~  147 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV---NDKVYDMIF  147 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH---TTSCEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh---ccCCccEEE
Confidence            367999999999999999999889999999999999999999999999986 8999999998864301   267899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      +..+.+.           .+.+++.+.+.|||||.|++
T Consensus       148 ~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          148 IDAAKAQ-----------SKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             EETTSSS-----------HHHHHHHHGGGEEEEEEEEE
T ss_pred             EcCcHHH-----------HHHHHHHHHHhcCCCeEEEE
Confidence            8743221           24799999999999999988

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.50  E-value=1.4e-13  Score=126.66  Aligned_cols=107  Identities=9%  Similarity=0.142  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-----cEEEEEcChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-----NGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-----nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++.+|||||||+|.++..+++..|..+++|+|+|+.+++.|++++...+++     ++.++++|+...     +..+++|
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~f  103 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-----DKRFSGY  103 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-----CGGGTTC
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-----ccccCCC
Confidence            467999999999999999999988899999999999999999998877665     799999999554     1135789


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |.|++...-.+....      ....+++++.++|||||.++..
T Consensus       104 D~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A          104 DAATVIEVIEHLDEN------RLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             SEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEEEE
T ss_pred             CEEEEHHHHHhCCHH------HHHHHHHHHHHhhCCCEEEEEc
Confidence            999987432221110      1137999999999999966654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.49  E-value=1.7e-13  Score=127.47  Aligned_cols=102  Identities=16%  Similarity=0.155  Sum_probs=86.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      +++|||||||+|.+++.||+..| +.+++++|+|+.+++.|++++.+.++.  |++++++|+.+.++..   .+++||.|
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~---~~~~fD~V  133 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL---ANDSYQLV  133 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS---CTTCEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh---cCCCcCeE
Confidence            45899999999999999999875 889999999999999999999999986  7999999998875321   36789999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      ++.   ++.  .      ..+.+++.+.+.|||||.+++
T Consensus       134 ~~d---~~~--~------~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          134 FGQ---VSP--M------DLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             EEC---CCT--T------THHHHHHHHHHHEEEEEEEEE
T ss_pred             EEc---CcH--H------HHHHHHHHHHHHcCCCcEEEE
Confidence            875   321  1      124789999999999999998

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.49  E-value=3.2e-13  Score=131.68  Aligned_cols=135  Identities=16%  Similarity=0.171  Sum_probs=103.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH----hCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~----~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|.++..+++..|..+++++|+++.+++.|++++..    ....+++++++|+.+++...   .+++||
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~---~~~~fD  171 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT---PDNTYD  171 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS---CTTCEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc---cCCcee
Confidence            46799999999999999999887888999999999999999998743    12357999999998874211   367899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH----HHHHHHHHHHHHcCCceeEe
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~----~~~~~~~~~l~~~g~~~~~~  371 (420)
                      .|++..++|+.    +...+...++++.+.++|||||.|++.+...    .....+.+.+++.||..+.+
T Consensus       172 vIi~d~~~~~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~  237 (304)
T 3bwc_A          172 VVIIDTTDPAG----PASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQY  237 (304)
T ss_dssp             EEEEECC-------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             EEEECCCCccc----cchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEE
Confidence            99998887752    1223445689999999999999999987543    34566788888888865443

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.49  E-value=6.6e-14  Score=135.52  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC------------------------------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI------------------------------  279 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l------------------------------  279 (420)
                      .+.+|||||||+|.++..+|+.+|..+|+|+|+|+.+++.|++++...+.                              
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            36789999999999999999999999999999999999999998765432                              


Q ss_pred             ----------------------------CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchh-hhhhHHHH
Q 014711          280 ----------------------------TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR-WRMVQRSL  330 (420)
Q Consensus       280 ----------------------------~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k-~Rl~~~~~  330 (420)
                                                  .|++|+++|+........+..+++||.|++...-.|.   |.. ..-....+
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~i---hl~~~~~~~~~~  202 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWV---HLNWGDEGLKRM  202 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHH---HHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHh---hhcCCHHHHHHH
Confidence                                        4899999999754222222257899999987433221   100 00112479


Q ss_pred             HHHHHhhccCCeEEEEEeC
Q 014711          331 VEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       331 l~~i~~~LkpgG~l~~~td  349 (420)
                      +++++++|||||+|++.+.
T Consensus       203 l~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          203 FRRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             HHHHHHHEEEEEEEEEECC
T ss_pred             HHHHHHHhCCCcEEEEecC
Confidence            9999999999999999753

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.49  E-value=4e-13  Score=128.83  Aligned_cols=106  Identities=18%  Similarity=0.233  Sum_probs=87.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++...++ .|+.++++|+.++. . +  .+++||.|+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~--~~~~fD~v~  141 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA-S-H--LETPVDLIL  141 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG-G-G--CSSCEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh-h-h--cCCCceEEE
Confidence            3579999999999999999988  67999999999999999999988888 68999999998872 1 2  478999999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +...-.+..+  +      ..+++++.++|||||++++.+.
T Consensus       142 ~~~~l~~~~~--~------~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          142 FHAVLEWVAD--P------RSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EESCGGGCSC--H------HHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ECchhhcccC--H------HHHHHHHHHHcCCCeEEEEEEe
Confidence            8743333211  1      3799999999999999999763

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.49  E-value=1.1e-13  Score=126.07  Aligned_cols=118  Identities=14%  Similarity=0.033  Sum_probs=95.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|.++..+++.+|+.+++|+|+|+.+++.|++++...+++|++++++|+.+..      ++++||.|+++
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~~D~i~~~  139 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP------SEPPFDGVISR  139 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC------CCSCEEEEECS
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC------ccCCcCEEEEe
Confidence            578999999999999999999999999999999999999999999999989999999998752      35789999875


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      ...+            ...+++.+.+.|+|||.+++.... ...+++.+.+.  +|...
T Consensus       140 ~~~~------------~~~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~~--g~~~~  183 (207)
T 1jsx_A          140 AFAS------------LNDMVSWCHHLPGEQGRFYALKGQ-MPEDEIALLPE--EYQVE  183 (207)
T ss_dssp             CSSS------------HHHHHHHHTTSEEEEEEEEEEESS-CCHHHHHTSCT--TEEEE
T ss_pred             ccCC------------HHHHHHHHHHhcCCCcEEEEEeCC-CchHHHHHHhc--CCcee
Confidence            2211            137999999999999999998643 22344444433  55543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.49  E-value=2.2e-13  Score=125.76  Aligned_cols=107  Identities=13%  Similarity=0.096  Sum_probs=88.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||||||+|.++..+|+..| +.+++|+|+++.+++.|++++.+.++.| ++++++|+.+.++........+||.|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v  137 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI  137 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence            367899999999999999999988 7899999999999999999999999875 99999999887543321112679999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++..+.+           ..+.+++.+.+.|+|||.+++.
T Consensus       138 ~~d~~~~-----------~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          138 FIDADKQ-----------NNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             EECSCGG-----------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEcCCcH-----------HHHHHHHHHHHhcCCCcEEEEe
Confidence            8853311           1248999999999999988874

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.49  E-value=2.2e-13  Score=123.70  Aligned_cols=123  Identities=16%  Similarity=0.120  Sum_probs=94.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|+++     ..|+.++++|+.++ +  +  ++++||.|++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~-~--~--~~~~fD~v~~~  109 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDL-S--D--SPKRWAGLLAW  109 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGG-G--G--SCCCEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCccccc-c--c--CCCCeEEEEeh
Confidence            578999999999999999998  56999999999999999887     34799999999876 2  2  57899999987


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH---------------HHHHHHHHHHHcCCceeEe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------------VMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~---------------~~~~~~~~l~~~g~~~~~~  371 (420)
                      ..-.+.....      ...+++++.++|||||.+++.+-...               ..+++.+.+++.||....+
T Consensus       110 ~~l~~~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  179 (203)
T 3h2b_A          110 YSLIHMGPGE------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS  179 (203)
T ss_dssp             SSSTTCCTTT------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred             hhHhcCCHHH------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEE
Confidence            5433322111      14899999999999999998752211               1456777777888766543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=1.6e-13  Score=128.13  Aligned_cols=129  Identities=12%  Similarity=0.016  Sum_probs=94.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++..+ .+++|+|+|+.+++.|++++...+ .|+.++++|+.+++.. +  ++++||.|++
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~-~--~~~~fD~V~~  134 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT-L--PDGHFDGILY  134 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG-S--CTTCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcc-c--CCCceEEEEE
Confidence            467899999999999999977543 489999999999999999987766 6899999999886321 2  5789999988


Q ss_pred             -eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH---------------HHHHHHHHHHcCCce
Q 014711          310 -QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV---------------MLRMKQQFLEYGKGK  368 (420)
Q Consensus       310 -~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~---------------~~~~~~~l~~~g~~~  368 (420)
                       .++... ...|.   -....++++++++|||||+|++. +....               .+.....+.+.||..
T Consensus       135 d~~~~~~-~~~~~---~~~~~~l~~~~r~LkpgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          135 DTYPLSE-ETWHT---HQFNFIKNHAFRLLKPGGVLTYC-NLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             CCCCCBG-GGTTT---HHHHHHHHTHHHHEEEEEEEEEC-CHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             CCcccch-hhhhh---hhHHHHHHHHHHhcCCCeEEEEE-ecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence             433211 11111   11236899999999999999874 22211               133455677888863

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.48  E-value=1.7e-13  Score=127.68  Aligned_cols=124  Identities=13%  Similarity=0.105  Sum_probs=96.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|+++.   ...|+.++++|+.++     +.++++||.|++
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  122 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSL-----PFENEQFEAIMA  122 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBC-----SSCTTCEEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcC-----CCCCCCccEEEE
Confidence            4679999999999999999998  679999999999999998874   346899999999875     225789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH---------------------HHHHHHHHHHHHcCCce
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---------------------EVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~---------------------~~~~~~~~~l~~~g~~~  368 (420)
                      ...-.+...  +      ..+++++.++|+|||++++.+...                     ....++.+.+++.||..
T Consensus       123 ~~~l~~~~~--~------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  194 (242)
T 3l8d_A          123 INSLEWTEE--P------LRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKV  194 (242)
T ss_dssp             ESCTTSSSC--H------HHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEE
T ss_pred             cChHhhccC--H------HHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEE
Confidence            754443211  1      378999999999999999975211                     01235777888888876


Q ss_pred             eEe
Q 014711          369 LVL  371 (420)
Q Consensus       369 ~~~  371 (420)
                      +..
T Consensus       195 ~~~  197 (242)
T 3l8d_A          195 VDG  197 (242)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.48  E-value=3.1e-13  Score=134.29  Aligned_cols=121  Identities=16%  Similarity=0.099  Sum_probs=96.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..+||+|||+|.+++.+|... |+.+++|+|+++.+++.|++|+...++.+++|.++|+.++..     +..++|.|+
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~-----~~~~~D~Ii  277 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR-----FFPEVDRIL  277 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG-----TCCCCSEEE
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc-----ccCCCCEEE
Confidence            35789999999999999999987 899999999999999999999999998899999999998721     345689999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHH
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML  355 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~  355 (420)
                      ++-|-.+.........-++..+++.+.+.|||||.+++.|.++.+..
T Consensus       278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~  324 (354)
T 3tma_A          278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLK  324 (354)
T ss_dssp             ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHH
T ss_pred             ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH
Confidence            87332221111111222346899999999999999999998776543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.48  E-value=3.3e-14  Score=130.24  Aligned_cols=106  Identities=8%  Similarity=-0.006  Sum_probs=80.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh------------CCCcEEEEEcChhhhhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS------------GITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~------------~l~nv~~~~~Da~~~~~~~~  297 (420)
                      .+.+|||+|||+|..+..||++  ..+|+|+|+|+.|++.|+++....            ...|++|+++|+.++..   
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~---   96 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA---   96 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH---
T ss_pred             CCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc---
Confidence            4689999999999999999998  679999999999999999876421            23589999999988621   


Q ss_pred             ccCC-CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          298 ASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       298 ~~~~-~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                        .+ ++||.|+....-.+..   ..   ....++++++++|||||++++.+
T Consensus        97 --~~~~~fD~v~~~~~l~~l~---~~---~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           97 --RDIGHCAAFYDRAAMIALP---AD---MRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             --HHHHSEEEEEEESCGGGSC---HH---HHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             --ccCCCEEEEEECcchhhCC---HH---HHHHHHHHHHHHcCCCcEEEEEE
Confidence              22 6899998753222111   11   12478999999999999855443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.48  E-value=2.5e-13  Score=128.29  Aligned_cols=105  Identities=19%  Similarity=0.194  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||||||+|.++..+|+..| +.+++|+|+|+.+++.|++++.+.++. |++++++|+.+.++...  ..++||.|
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~--~~~~fD~V  140 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG--ECPAFDLI  140 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC--SCCCCSEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC--CCCCeEEE
Confidence            367899999999999999999988 899999999999999999999999987 79999999988654321  23589999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++..+.+           -.+.+++.+.+.|||||+|++.
T Consensus       141 ~~d~~~~-----------~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          141 FIDADKP-----------NNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             EECSCGG-----------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EECCchH-----------HHHHHHHHHHHhcCCCeEEEEe
Confidence            8853211           1247999999999999999874

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.48  E-value=1.5e-13  Score=128.50  Aligned_cols=130  Identities=10%  Similarity=0.103  Sum_probs=99.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.|++++...+..++.++++|+.++.     ..+++||.|++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~v~~  152 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-----PEPDSYDVIWI  152 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-----CCSSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-----CCCCCEEEEEE
Confidence            36799999999999999999886 5699999999999999999987765567999999987651     24568999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH--------------HHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------------EVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~--------------~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ...-.+..+.      ....+++++.++|||||++++.+...              ...+++.+.+++.||..+..
T Consensus       153 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          153 QWVIGHLTDQ------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             cchhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            7433221110      11379999999999999999854211              02456778888888876544

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.48  E-value=2.7e-13  Score=128.69  Aligned_cols=122  Identities=16%  Similarity=0.286  Sum_probs=101.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.+++.+++..+  +++|+|+++.+++.|++++..+++. +++.++|+.+.+      ++++||.|++
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~------~~~~fD~Vv~  190 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAAL------PFGPFDLLVA  190 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHG------GGCCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcC------cCCCCCEEEE
Confidence            467999999999999999998755  9999999999999999999988877 999999997742      2568999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +.+.      +     ....++..+.+.|||||++++..-.....+.+.+.++++||....+
T Consensus       191 n~~~------~-----~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~  241 (254)
T 2nxc_A          191 NLYA------E-----LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             ECCH------H-----HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             CCcH------H-----HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence            7421      1     1247899999999999999997545556778889999999887554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.47  E-value=2.9e-13  Score=119.00  Aligned_cols=107  Identities=14%  Similarity=0.125  Sum_probs=84.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||+|||+|.++..+++..+.  ++|+|+|+.+++.|++++...++ |++++++|+.+.++... ....+||.|++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~-~~~~~~D~i~~  116 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAK-AQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHH-HTTCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhh-ccCCceEEEEE
Confidence            3678999999999999999998655  99999999999999999998888 89999999988643221 12347999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHH--hhccCCeEEEEEeCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~--~~LkpgG~l~~~td~  350 (420)
                      +.  |+.  .+.      +++++.+.  ++|+|||.+++.+..
T Consensus       117 ~~--~~~--~~~------~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          117 AP--PYA--MDL------AALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CC--CTT--SCT------THHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             CC--CCc--hhH------HHHHHHHHhhcccCCCcEEEEEeCC
Confidence            62  332  111      25566666  999999999998754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.47  E-value=3.5e-13  Score=135.25  Aligned_cols=124  Identities=18%  Similarity=0.208  Sum_probs=95.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC---cEEEEEcChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT---NGYFIATNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~---nv~~~~~Da~~~~~~~~~~~~~~~d~  306 (420)
                      .+.+|||+|||+|.+++.+++.+|..+|+|+|+|+.+++.|++++..+++.   +++|+++|+.+.+      ++++||.
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~------~~~~fD~  295 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV------EPFRFNA  295 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC------CTTCEEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC------CCCCeeE
Confidence            347999999999999999999999999999999999999999999998875   6999999998742      4678999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-cHHHHHHHHHHHH
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFL  362 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-~~~~~~~~~~~l~  362 (420)
                      |+++  .|++.... ..+....++++.+.+.|||||.+++..+ ...|...+.+.+.
T Consensus       296 Ii~n--ppfh~~~~-~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg  349 (375)
T 4dcm_A          296 VLCN--PPFHQQHA-LTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG  349 (375)
T ss_dssp             EEEC--CCC--------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             EEEC--CCcccCcc-cCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence            9987  44432111 1112234789999999999999999753 3445444444444

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.47  E-value=2.8e-14  Score=139.94  Aligned_cols=213  Identities=16%  Similarity=0.188  Sum_probs=130.6

Q ss_pred             CcccHHHHHHHhcCCCeEE--Eec---cceEEEcCCCCchHHHHHHHHHhhhcCCCCeeEechhHHH---HHhhcCCC-c
Q 014711          115 GPRSVEEITSTITKCKKVI--WVG---PVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACK---AIAKVSSS-I  185 (420)
Q Consensus       115 Gp~T~~~~~~~~~~~~~i~--wnG---p~G~~e~~~f~~GT~~l~~~~a~~~~~~~~~~i~gg~~~~---~~~~~~~~-~  185 (420)
                      ||.|++++++.++...+.+  |+.   .+|+++.+   .|+|.+.+.-+.........++.+.....   ........ .
T Consensus        38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~---~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  114 (335)
T 2r3s_A           38 GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ---AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLT  114 (335)
T ss_dssp             SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHH
T ss_pred             CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec---CCEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHH
Confidence            8999999999999876653  444   45888753   46666643321211111222333322211   11111122 3


Q ss_pred             ceeeeecCCCee--eeeeccccCCCc-cccccCC-c----cccccccccCC--CCCCEEEEEcCCccHHHHHHHHhCCCC
Q 014711          186 FGLNMVESGSAV--WEFLKGRMLPGV-SALDRAF-P----FDIDWSAAYHD--PAQPLVVDIGSGNGLFLLGMARKRKDL  255 (420)
Q Consensus       186 ~~~st~~GGGa~--le~l~g~~lPgv-~aL~~~~-p----~~~~~~~~f~~--~~~~~vLDIGcG~G~~~~~lA~~~P~~  255 (420)
                      +.+++  |...+  ++++..  .|.. +.+...+ .    ....+.+.+..  .+..+|||||||+|.++..+++.+|+.
T Consensus       115 ~~l~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~  190 (335)
T 2r3s_A          115 AAVLK--GGTAISSEGTLSP--EHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNA  190 (335)
T ss_dssp             HHHHH--TSCCSTTTGGGST--TCTHHHHHHHHSGGGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTC
T ss_pred             HHHhc--CCCCCCCcccccC--CHHHHHHHHHHHHHHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCC
Confidence            66677  44433  222211  1111 1111111 0    00012222221  246899999999999999999999999


Q ss_pred             eEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHH
Q 014711          256 NFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV  334 (420)
Q Consensus       256 ~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i  334 (420)
                      +++|+|++ .+++.|++++...++. +++|+++|+.+. +     .+..+|.|++...-.++..  .    ....+++.+
T Consensus       191 ~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~~D~v~~~~~l~~~~~--~----~~~~~l~~~  257 (335)
T 2r3s_A          191 EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV-D-----YGNDYDLVLLPNFLHHFDV--A----TCEQLLRKI  257 (335)
T ss_dssp             EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS-C-----CCSCEEEEEEESCGGGSCH--H----HHHHHHHHH
T ss_pred             eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC-C-----CCCCCcEEEEcchhccCCH--H----HHHHHHHHH
Confidence            99999999 9999999999888876 599999999764 1     1334999988632211100  0    124899999


Q ss_pred             HhhccCCeEEEEE
Q 014711          335 SDLLVHDGKVFLQ  347 (420)
Q Consensus       335 ~~~LkpgG~l~~~  347 (420)
                      .+.|+|||++++.
T Consensus       258 ~~~L~pgG~l~i~  270 (335)
T 2r3s_A          258 KTALAVEGKVIVF  270 (335)
T ss_dssp             HHHEEEEEEEEEE
T ss_pred             HHhCCCCcEEEEE
Confidence            9999999988875

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.47  E-value=1.9e-13  Score=128.87  Aligned_cols=128  Identities=14%  Similarity=0.139  Sum_probs=98.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.|++++...  .|++++++|+.++     +.++++||.|++
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~-----~~~~~~fD~v~~  126 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTK-----EFPENNFDLIYS  126 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTC-----CCCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccC-----CCCCCcEEEEeH
Confidence            46799999999999999999987 689999999999999999887554  6899999999875     225789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC---c-----HH-------------HHHHHHHHHHHcCCce
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD---I-----EE-------------VMLRMKQQFLEYGKGK  368 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td---~-----~~-------------~~~~~~~~l~~~g~~~  368 (420)
                      ...-.+....      ....+++++.++|||||.+++.+-   .     ..             ..+++.+.+++.||..
T Consensus       127 ~~~l~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  200 (266)
T 3ujc_A          127 RDAILALSLE------NKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKN  200 (266)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEE
T ss_pred             HHHHHhcChH------HHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeE
Confidence            7433221101      124899999999999999998741   1     00             1345677788888876


Q ss_pred             eEe
Q 014711          369 LVL  371 (420)
Q Consensus       369 ~~~  371 (420)
                      +.+
T Consensus       201 ~~~  203 (266)
T 3ujc_A          201 VVS  203 (266)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.47  E-value=2.3e-13  Score=136.85  Aligned_cols=134  Identities=13%  Similarity=0.178  Sum_probs=102.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHh-----C-C--CcEEEEEcChhhhhhh-hhcc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLS-----G-I--TNGYFIATNATSTFRS-IVAS  299 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~-----~-l--~nv~~~~~Da~~~~~~-~~~~  299 (420)
                      ++.+|||||||+|.++..+++.+ |..+|+|+|+|+.+++.|++++...     | .  .|++|+++|+.++... ..+.
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            46899999999999999999986 8899999999999999999988654     3 2  5899999999876211 0022


Q ss_pred             CCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH----------------------HHHHHH
Q 014711          300 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----------------------EVMLRM  357 (420)
Q Consensus       300 ~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~----------------------~~~~~~  357 (420)
                      ++++||.|+++..-.+..+  +      ..+++++.++|||||+|++..-..                      ...+++
T Consensus       163 ~~~~fD~V~~~~~l~~~~d--~------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTN--K------LALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDF  234 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSC--H------HHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHH
T ss_pred             CCCCEEEEEEccchhcCCC--H------HHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHH
Confidence            5789999998864433222  1      389999999999999999863110                      112567


Q ss_pred             HHHHHHcCCceeEe
Q 014711          358 KQQFLEYGKGKLVL  371 (420)
Q Consensus       358 ~~~l~~~g~~~~~~  371 (420)
                      .+.+++.||..+.+
T Consensus       235 ~~ll~~aGF~~v~~  248 (383)
T 4fsd_A          235 RRLVAEAGFRDVRL  248 (383)
T ss_dssp             HHHHHHTTCCCEEE
T ss_pred             HHHHHHCCCceEEE
Confidence            88889999876544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.47  E-value=2.9e-13  Score=128.54  Aligned_cols=127  Identities=14%  Similarity=0.095  Sum_probs=101.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++. |..+++|+|+|+.+++.|++++...+++ |++++++|+.++     +.++++||.|+
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~i~  119 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-----PFRNEELDLIW  119 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CCCTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-----CCCCCCEEEEE
Confidence            4689999999999999999998 8889999999999999999999988885 599999999775     22478999999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-------HH-------------HHHHHHHHHHHcCCce
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EE-------------VMLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-------~~-------------~~~~~~~~l~~~g~~~  368 (420)
                      +..+-.+. .        ...+++.+.++|||||++++.+-.       ..             ....+.+.+++.||..
T Consensus       120 ~~~~~~~~-~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  190 (267)
T 3kkz_A          120 SEGAIYNI-G--------FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLP  190 (267)
T ss_dssp             ESSCGGGT-C--------HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEE
T ss_pred             EcCCceec-C--------HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEE
Confidence            87433322 1        147999999999999999986411       01             1235677888999876


Q ss_pred             eEe
Q 014711          369 LVL  371 (420)
Q Consensus       369 ~~~  371 (420)
                      +.+
T Consensus       191 v~~  193 (267)
T 3kkz_A          191 VAT  193 (267)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.47  E-value=3.6e-13  Score=131.25  Aligned_cols=127  Identities=12%  Similarity=0.035  Sum_probs=101.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..+++++ ..+++|+|+|+.+++.|++++...++. |+.|+++|+.++     +.++++||.|+
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~  190 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-----PFDKGAVTASW  190 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CCCTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-----CCCCCCEeEEE
Confidence            46899999999999999999986 679999999999999999999998886 799999999875     22468999999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc--H--------------H------HHHHHHHHHHHcCC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--E--------------E------VMLRMKQQFLEYGK  366 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~--~--------------~------~~~~~~~~l~~~g~  366 (420)
                      +...-.+..         ...+++++.++|||||++++.+..  .              .      -.+++.+.+++.||
T Consensus       191 ~~~~l~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf  261 (312)
T 3vc1_A          191 NNESTMYVD---------LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRL  261 (312)
T ss_dssp             EESCGGGSC---------HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTE
T ss_pred             ECCchhhCC---------HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCC
Confidence            874433321         248999999999999999987511  0              0      12456778888898


Q ss_pred             ceeEe
Q 014711          367 GKLVL  371 (420)
Q Consensus       367 ~~~~~  371 (420)
                      ..+.+
T Consensus       262 ~~~~~  266 (312)
T 3vc1_A          262 VPHTI  266 (312)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76544

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.46  E-value=1.8e-13  Score=128.17  Aligned_cols=103  Identities=23%  Similarity=0.343  Sum_probs=87.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++..+  +++|+|+|+.+++.|++++...+++|+.++++|+.++     +.++++||.|++
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v~~   93 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-----PFPDDSFDIITC   93 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC-----CCCCCcEEEEEE
Confidence            468999999999999999999864  8999999999999999999999988999999999775     225689999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .+.-.+..+        ...+++++.++|||||++++.
T Consensus        94 ~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           94 RYAAHHFSD--------VRKAVREVARVLKQDGRFLLV  123 (239)
T ss_dssp             ESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCchhhccC--------HHHHHHHHHHHcCCCcEEEEE
Confidence            743332211        137999999999999999985

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.46  E-value=4.9e-13  Score=120.46  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++...+++|+.++++|+.++     + .+++||.|++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~D~v~~  103 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL-----T-FDRQYDFILS  103 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC-----C-CCCCEEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC-----C-CCCCceEEEE
Confidence            3579999999999999999988  679999999999999999999888888999999999875     2 2678999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ..+-.+....      ....+++.+.++|||||.+++.+
T Consensus       104 ~~~l~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          104 TVVLMFLEAK------TIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             ESCGGGSCGG------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cchhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEE
Confidence            7543332111      12479999999999999987754

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.46  E-value=1.8e-13  Score=133.01  Aligned_cols=108  Identities=10%  Similarity=-0.003  Sum_probs=87.5

Q ss_pred             CCCEEEEEcCCccHHHHHHH-HhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA-~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||||||+|.++..+| ..+|+.+++|+|+|+.+++.|++++...++.+ ++++++|+.++     + .+++||.|
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~v  191 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-----D-TREGYDLL  191 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-----C-CCSCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-----C-ccCCeEEE
Confidence            46889999999999999997 56899999999999999999999998888765 99999999876     2 24899999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +++.+-.+....     .....+++++.++|||||+|++.+
T Consensus       192 ~~~~~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDD-----ARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCH-----HHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECChhhhcCCH-----HHHHHHHHHHHHhcCCCeEEEEEe
Confidence            886422221111     112368999999999999999864

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.46  E-value=5.4e-13  Score=129.61  Aligned_cols=128  Identities=16%  Similarity=0.207  Sum_probs=96.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH--hC--CCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL--SG--ITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~--~~--l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|.++..+++..|..+++++|+++.+++.|++++..  .+  .++++++++|+.+.++.    .+++||
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD  165 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----FKNEFD  165 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG----CSSCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----CCCCce
Confidence            45799999999999999999987889999999999999999998754  22  36899999999876432    357899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      .|++..++||..   +...+...++++.+.+.|+|||.|++.+..    ......+.+.+.+.
T Consensus       166 ~Ii~d~~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  225 (296)
T 1inl_A          166 VIIIDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV  225 (296)
T ss_dssp             EEEEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCcccC---chhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH
Confidence            999988887532   122344568999999999999999998654    33345566666665

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.46  E-value=4.6e-13  Score=132.34  Aligned_cols=114  Identities=17%  Similarity=0.190  Sum_probs=93.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--CC--CcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--~l--~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|.++..+++..|..+++++|+|+.+++.|++++...  ++  ++++++++|+.++++..   .+++||
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~---~~~~fD  196 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA---AEGSYD  196 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS---CTTCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc---cCCCcc
Confidence            467999999999999999999888899999999999999999998653  33  57999999998864321   357899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      .|++..++|+.    +...+...++++.+.++|+|||.|++.++.
T Consensus       197 lIi~d~~~p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  237 (334)
T 1xj5_A          197 AVIVDSSDPIG----PAKELFEKPFFQSVARALRPGGVVCTQAES  237 (334)
T ss_dssp             EEEECCCCTTS----GGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEECCCCccC----cchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            99998777763    222244579999999999999999997543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.46  E-value=6.9e-13  Score=130.38  Aligned_cols=127  Identities=11%  Similarity=0.120  Sum_probs=100.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH--hC--CCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL--SG--ITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~--~~--l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|.++..+++..|..+++++|+|+.+++.|++++..  .+  .++++++++|+.+.++.    .+++||
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD  191 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNTYD  191 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSCEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh----cCCCce
Confidence            46799999999999999999887889999999999999999999765  22  35799999999886432    367899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH----HHHHHHHHHHHHc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY  364 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~----~~~~~~~~~l~~~  364 (420)
                      .|+++.++|+.    +...+...++++.+.+.|+|||.+++.+...    .....+.+.+++.
T Consensus       192 vIi~d~~~p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  250 (321)
T 2pt6_A          192 VIIVDSSDPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL  250 (321)
T ss_dssp             EEEEECCCSSS----GGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT
T ss_pred             EEEECCcCCCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence            99998888762    2234445699999999999999999986432    3344556666654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.46  E-value=2.1e-13  Score=131.80  Aligned_cols=123  Identities=15%  Similarity=0.192  Sum_probs=96.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeE---eE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKL---IL  306 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~---d~  306 (420)
                      +.+|||+|||+|.+++.+++. |+.+++|+|+|+.+++.|++++..++++| ++|+++|+.+.+       +++|   |.
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-------~~~f~~~D~  195 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-------KEKFASIEM  195 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-------GGGTTTCCE
T ss_pred             CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-------ccccCCCCE
Confidence            568999999999999999999 99999999999999999999999999886 999999998753       2467   99


Q ss_pred             EEEeCCCCCCCCc---------chhhhhh----HHHHHHHHH-hhccCCeEEEEEeCcHHHHHHHHHHHHHc
Q 014711          307 VSIQCPNPDFNRP---------EHRWRMV----QRSLVEAVS-DLLVHDGKVFLQSDIEEVMLRMKQQFLEY  364 (420)
Q Consensus       307 i~~~fpdp~~k~~---------~~k~Rl~----~~~~l~~i~-~~LkpgG~l~~~td~~~~~~~~~~~l~~~  364 (420)
                      |+++  .|+....         .+...+.    ...+++.+. +.|+|||.+++.++. .+.+.+.+.+.++
T Consensus       196 Ivsn--PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~-~q~~~v~~~~~~~  264 (284)
T 1nv8_A          196 ILSN--PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE-DQVEELKKIVSDT  264 (284)
T ss_dssp             EEEC--CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT-TCHHHHTTTSTTC
T ss_pred             EEEc--CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc-hHHHHHHHHHHhC
Confidence            9987  4443211         1111111    026899999 999999999998865 4456666666554

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.46  E-value=2.6e-13  Score=126.21  Aligned_cols=100  Identities=15%  Similarity=0.256  Sum_probs=81.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++..+  +++|+|+|+.+++.|+++...    |+.++++|+.++    +  ++++||.|++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~----~--~~~~fD~v~~  109 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA----Q--LPRRYDNIVL  109 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC----C--CSSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc----C--cCCcccEEEE
Confidence            356799999999999999999865  799999999999999988643    899999999875    1  4788999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHH-hhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVS-DLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~-~~LkpgG~l~~~td  349 (420)
                      ...-.+..+  +      ..+++++. ++|||||++++.+.
T Consensus       110 ~~~l~~~~~--~------~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          110 THVLEHIDD--P------VALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             ESCGGGCSS--H------HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhHHHhhcC--H------HHHHHHHHHHhcCCCCEEEEEcC
Confidence            743222111  1      37999999 99999999999763

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.45  E-value=6e-13  Score=122.88  Aligned_cols=106  Identities=18%  Similarity=0.227  Sum_probs=87.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhcc-CCCeEeEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVAS-YPGKLILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~-~~~~~d~i  307 (420)
                      +.+|||||||+|.++..+|+..| +.+++|+|+++.+++.|++++...++.+ ++++++|+.+.++..... ..++||.|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            57899999999999999999987 8999999999999999999999999875 999999998775432200 01789999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++..   +  .      -....+++.+.+.|||||+|++.
T Consensus       145 ~~~~---~--~------~~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          145 YIDA---D--K------ANTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             EECS---C--G------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECC---C--H------HHHHHHHHHHHHhcCCCcEEEEe
Confidence            8753   2  0      11247899999999999999884

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.45  E-value=4.9e-13  Score=124.71  Aligned_cols=123  Identities=12%  Similarity=0.140  Sum_probs=101.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCC-eEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPG-KLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~-~~d~i  307 (420)
                      ++.+|+|||||+|.+++.+|+..|..+++|+|+++.+++.|++|+..+++.| +++.++|+.+.+      +++ .||.|
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l------~~~~~~D~I   88 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF------EETDQVSVI   88 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------CGGGCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc------ccCcCCCEE
Confidence            4678999999999999999999999999999999999999999999999974 999999997643      223 69998


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ++.-.         ...+ -.+++....+.|+|+|+|+++...  -...+++.+.++||....
T Consensus        89 viaG~---------Gg~~-i~~Il~~~~~~L~~~~~lVlq~~~--~~~~vr~~L~~~Gf~i~~  139 (225)
T 3kr9_A           89 TIAGM---------GGRL-IARILEEGLGKLANVERLILQPNN--REDDLRIWLQDHGFQIVA  139 (225)
T ss_dssp             EEEEE---------CHHH-HHHHHHHTGGGCTTCCEEEEEESS--CHHHHHHHHHHTTEEEEE
T ss_pred             EEcCC---------ChHH-HHHHHHHHHHHhCCCCEEEEECCC--CHHHHHHHHHHCCCEEEE
Confidence            76411         1112 248899999999999999998643  355788899999987654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.45  E-value=3.3e-13  Score=129.45  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=95.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.+++.+|+..+..+|+|+|+|+.+++.|++++..++++|+.++++|+.+. +     ...++|.|++
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~-----~~~~~D~Vi~  192 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-E-----LKDVADRVIM  192 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-C-----CTTCEEEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-C-----ccCCceEEEE
Confidence            467999999999999999999988889999999999999999999999999999999999875 2     2568999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH-----HHHHHHHHHHHHc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEY  364 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~-----~~~~~~~~~l~~~  364 (420)
                      +.|.    .        ..+++..+.+.|+|||.+++.+...     .......+.+.+.
T Consensus       193 d~p~----~--------~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~  240 (272)
T 3a27_A          193 GYVH----K--------THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEK  240 (272)
T ss_dssp             CCCS----S--------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHH
T ss_pred             CCcc----c--------HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHH
Confidence            7442    1        1268889999999999999875332     3444555656554

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.45  E-value=6.7e-13  Score=128.54  Aligned_cols=106  Identities=12%  Similarity=0.106  Sum_probs=87.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++.++ .+++|+|+|+.+++.|++++...++. |++++++|+.++        +++||.|+
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~fD~v~  142 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--------DEPVDRIV  142 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--------CCCCSEEE
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--------CCCccEEE
Confidence            467999999999999999999987 89999999999999999999988887 899999999764        57899998


Q ss_pred             EeC-----CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQC-----PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~f-----pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +..     |||+.....    -..+.+++++.++|||||++++.+
T Consensus       143 ~~~~~~~~~d~~~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          143 SLGAFEHFADGAGDAGF----ERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             EESCGGGTTCCSSCCCT----THHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             EcchHHhcCccccccch----hHHHHHHHHHHHhcCCCcEEEEEE
Confidence            863     444311000    012489999999999999999875

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.45  E-value=4.1e-13  Score=129.07  Aligned_cols=104  Identities=15%  Similarity=0.246  Sum_probs=86.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++.+|. .+++|+|+|+.+++.|++++...+. |++|+++|+.++     + .+++||.|+
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~v~   94 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEI-----E-LNDKYDIAI   94 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTC-----C-CSSCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhc-----C-cCCCeeEEE
Confidence            4689999999999999999999985 8999999999999999999876665 899999999875     2 256899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+..+        .+.+++++.++|||||++++..
T Consensus        95 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           95 CHAFLLHMTT--------PETMLQKMIHSVKKGGKIICFE  126 (284)
T ss_dssp             EESCGGGCSS--------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECChhhcCCC--------HHHHHHHHHHHcCCCCEEEEEe
Confidence            8753222211        1389999999999999999764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.44  E-value=3.7e-13  Score=123.04  Aligned_cols=107  Identities=11%  Similarity=0.139  Sum_probs=85.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC--CcEEEEEcChhhhhhhhhccCCCe-EeEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGK-LILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l--~nv~~~~~Da~~~~~~~~~~~~~~-~d~i  307 (420)
                      +.+|||+|||+|.+++.++++. ..+|+|+|+|+.+++.|++++...++  .|+.++++|+.++++. +  .+++ ||.|
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~-~--~~~~~fD~I  129 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ-P--QNQPHFDVV  129 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS-C--CSSCCEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh-h--ccCCCCCEE
Confidence            5789999999999999977764 36899999999999999999999998  6999999999876321 1  2568 9999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHH--HhhccCCeEEEEEeCc
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDI  350 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i--~~~LkpgG~l~~~td~  350 (420)
                      +++.|  +. ..      ..+.+++.+  .++|+|||.+++.+..
T Consensus       130 ~~~~~--~~-~~------~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          130 FLDPP--FH-FN------LAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             EECCC--SS-SC------HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EECCC--CC-Cc------cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            88633  32 11      123677777  6689999999998754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.44  E-value=3.9e-13  Score=127.69  Aligned_cols=107  Identities=13%  Similarity=0.029  Sum_probs=81.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH-----------------hCCCcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-----------------SGITNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~-----------------~~l~nv~~~~~Da~~~  292 (420)
                      .+.+|||+|||+|..+..||++  ..+|+|+|+|+.|++.|+++...                 ....|++|+++|+.++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4679999999999999999988  67999999999999999877531                 1235899999999886


Q ss_pred             hhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          293 FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       293 ~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ..   . ..++||.|+....-.+..   ..   ....+++++.++|||||+|++.+
T Consensus       146 ~~---~-~~~~FD~V~~~~~l~~l~---~~---~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          146 PR---A-NIGKFDRIWDRGALVAIN---PG---DHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GG---G-CCCCEEEEEESSSTTTSC---GG---GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Cc---c-cCCCEEEEEEhhhhhhCC---HH---HHHHHHHHHHHHcCCCeEEEEEE
Confidence            21   0 137899998653222211   11   12479999999999999997654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.44  E-value=6.1e-13  Score=128.65  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=87.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHh--CCCcEEEEEcChhhhhhhhhccCC-----
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYP-----  301 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~--~l~nv~~~~~Da~~~~~~~~~~~~-----  301 (420)
                      ++.+|||||||+|.++..+++.+ |..+++|+|+|+.+++.|++++...  ...|++|+++|+.++.   +  .+     
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~---~--~~~~~~~  110 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK---F--LGADSVD  110 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG---G--GCTTTTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC---c--ccccccc
Confidence            47899999999999999999986 8999999999999999999998875  3568999999998762   1  23     


Q ss_pred             -CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          302 -GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       302 -~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                       ++||.|++...-.|.   +      ...+++++.++|||||.|++
T Consensus       111 ~~~fD~V~~~~~l~~~---~------~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          111 KQKIDMITAVECAHWF---D------FEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             SSCEEEEEEESCGGGS---C------HHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCeeEEeHhhHHHHh---C------HHHHHHHHHHhcCCCcEEEE
Confidence             799999998654443   1      14899999999999999988

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.44  E-value=5.3e-13  Score=119.16  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=86.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||+|||+|.++..+++ .+..+++|+|+|+.+++.|++++...++ .|++++++|+.+.++.. +..+++||.|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~fD~i~  121 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF-YEEKLQFDLVL  121 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH-HHTTCCEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHH-HhcCCCCCEEE
Confidence            467999999999999999887 4568999999999999999999998887 47999999998864322 11367899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHH--HhhccCCeEEEEEeCc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDI  350 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i--~~~LkpgG~l~~~td~  350 (420)
                      ++.  |+...       ..+.++..+  .++|+|||.+++.+..
T Consensus       122 ~~~--~~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          122 LDP--PYAKQ-------EIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             ECC--CGGGC-------CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ECC--CCCch-------hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            863  33211       113556666  8899999999998744

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.44  E-value=1.4e-12  Score=123.06  Aligned_cols=81  Identities=10%  Similarity=0.102  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccC-CCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASY-PGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~-~~~~d~i  307 (420)
                      ++.+|||+|||+|.++..++++.|+.+++|+|+|+.+++.|++++...++++ ++++++|+.+.+...++.. +.+||.|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            3578999999999999999999888999999999999999999999988875 9999999876211122101 2589999


Q ss_pred             EEe
Q 014711          308 SIQ  310 (420)
Q Consensus       308 ~~~  310 (420)
                      +++
T Consensus       145 ~~n  147 (254)
T 2h00_A          145 MCN  147 (254)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            987

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.43  E-value=1.4e-12  Score=127.75  Aligned_cols=130  Identities=15%  Similarity=0.174  Sum_probs=101.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH--hC---CCcEEEEEcChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL--SG---ITNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~--~~---l~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++.+|||||||+|.++..+++..|..+++++|+++.+++.|++++..  .+   .++++++++|+.+.++.    .+++|
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~f  152 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TEERY  152 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CCCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh----cCCCc
Confidence            46799999999999999999987888999999999999999998764  22   46899999999886432    36789


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-----HHHHHHHHHHHHHc
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEY  364 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-----~~~~~~~~~~l~~~  364 (420)
                      |.|++..++|+.. ..+...+...++++.+.++|+|||.|++.+..     ......+.+.+++.
T Consensus       153 D~Ii~d~~~~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~  216 (314)
T 1uir_A          153 DVVIIDLTDPVGE-DNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA  216 (314)
T ss_dssp             EEEEEECCCCBST-TCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT
T ss_pred             cEEEECCCCcccc-cCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH
Confidence            9999998887611 11223455679999999999999999997532     23345566666654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.43  E-value=6.1e-13  Score=118.22  Aligned_cols=107  Identities=18%  Similarity=0.189  Sum_probs=86.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++...++. |+.++++|+.+.++.    .+..||.|+
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~fD~i~  105 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC----LTGRFDLVF  105 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH----BCSCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh----hcCCCCEEE
Confidence            4678999999999999999987 6689999999999999999999888875 799999999886432    246799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHH--hhccCCeEEEEEeCc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI  350 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~--~~LkpgG~l~~~td~  350 (420)
                      ++  .|+.    .   ...+++++.+.  ++|+|||.+++.+..
T Consensus       106 ~~--~~~~----~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          106 LD--PPYA----K---ETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             EC--CSSH----H---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             EC--CCCC----c---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            86  2331    1   11246677776  999999999998754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.43  E-value=1.1e-12  Score=124.54  Aligned_cols=105  Identities=16%  Similarity=0.195  Sum_probs=88.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.|++++...++. ++.++++|+.++     +.++++||.|+
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~  134 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-----PFEDASFDAVW  134 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CSCTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-----CCCCCCccEEE
Confidence            46899999999999999999986 689999999999999999999888875 699999999875     22568999999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+..+.        ..+++++.++|||||++++.+
T Consensus       135 ~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          135 ALESLHHMPDR--------GRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EESCTTTSSCH--------HHHHHHHHTTEEEEEEEEEEE
T ss_pred             EechhhhCCCH--------HHHHHHHHHHcCCCeEEEEEE
Confidence            87544332221        489999999999999999864

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.43  E-value=6.9e-13  Score=129.72  Aligned_cols=126  Identities=10%  Similarity=0.026  Sum_probs=98.5

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  311 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f  311 (420)
                      .+|||||||+|.++..+++.+|+.+++++|+++.+++.|+++.....-.+++++++|+.+++...   .+++||.|++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~---~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF---TPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC---CTTCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc---cCCCCCEEEECC
Confidence            38999999999999999999999999999999999999999876444468999999999875321   367899999976


Q ss_pred             CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-H--HHHHHHHHHHHHc
Q 014711          312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-E--EVMLRMKQQFLEY  364 (420)
Q Consensus       312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~--~~~~~~~~~l~~~  364 (420)
                      .+++...    ..+...+|++.++++|+|||.|++.+.. .  .+...+.+.+.+.
T Consensus       168 ~~~~~~~----~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v  219 (317)
T 3gjy_A          168 FAGAITP----QNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV  219 (317)
T ss_dssp             STTSCCC----GGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCccccc----hhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH
Confidence            6665221    2345579999999999999999987632 1  2233455555543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.43  E-value=6.6e-13  Score=124.55  Aligned_cols=128  Identities=17%  Similarity=0.174  Sum_probs=96.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++.. ..+++|+|+|+.+++.|++++...  .++.++++|+.++     +.++++||.|++
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~-----~~~~~~fD~v~~  164 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETA-----TLPPNTYDLIVI  164 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGC-----CCCSSCEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHC-----CCCCCCeEEEEE
Confidence            46899999999999999999886 567999999999999999987644  6899999999875     224679999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH---------------HHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------------VMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~---------------~~~~~~~~l~~~g~~~~~~  371 (420)
                      .+.-.+....      ....+++++.++|||||++++.+....               ..+++.+.+++.||..+.+
T Consensus       165 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  235 (254)
T 1xtp_A          165 QWTAIYLTDA------DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             cchhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence            7432221100      124899999999999999999752100               1245667777777776543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.43  E-value=1.7e-12  Score=124.87  Aligned_cols=127  Identities=12%  Similarity=0.183  Sum_probs=100.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--CC--CcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--~l--~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|.++..+++..|..+++++|+++.+++.|++++...  ++  ++++++++|+.+.++.    .+++||
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~----~~~~fD  150 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----SENQYD  150 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----CCSCEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----CCCCee
Confidence            468999999999999999998777889999999999999999987542  23  5799999999886532    357899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      .|++..++|+...    ..+...++++.+.++|+|||.+++.+..    ......+.+.+++.
T Consensus       151 ~Ii~d~~~~~~~~----~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  209 (275)
T 1iy9_A          151 VIMVDSTEPVGPA----VNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI  209 (275)
T ss_dssp             EEEESCSSCCSCC----CCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCCcc----hhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh
Confidence            9999877775321    1234458999999999999999998643    34455666677765

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.43  E-value=8.8e-13  Score=120.62  Aligned_cols=106  Identities=14%  Similarity=0.161  Sum_probs=84.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|.+++.++++. ..+|+|+|+|+.+++.|++++...++.|++++++|+.+.++    ..+++||.|+++
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~----~~~~~fD~V~~~  129 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA----QKGTPHNIVFVD  129 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS----SCCCCEEEEEEC
T ss_pred             CCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh----hcCCCCCEEEEC
Confidence            5789999999999999988774 24899999999999999999999988899999999988632    135689999886


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHh--hccCCeEEEEEeCc
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDI  350 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~--~LkpgG~l~~~td~  350 (420)
                      .|  +.. .      ....+++.+.+  +|+|||.+++.+..
T Consensus       130 ~p--~~~-~------~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          130 PP--FRR-G------LLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             CS--SST-T------THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CC--CCC-C------cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            32  321 1      11367777765  59999999998754

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.43  E-value=3.4e-12  Score=122.32  Aligned_cols=104  Identities=15%  Similarity=0.204  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++.++ .+++|+|+|+.+++.|++++...++. ++.++++|+.++        +++||.|+
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------~~~fD~v~  134 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------DEPVDRIV  134 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--------CCCCSEEE
T ss_pred             CcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC--------CCCeeEEE
Confidence            467999999999999999997764 49999999999999999999877764 799999999764        27899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+.....      ...+++++.++|||||.+++.+
T Consensus       135 ~~~~l~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          135 SIGAFEHFGHER------YDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             EESCGGGTCTTT------HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EeCchhhcChHH------HHHHHHHHHHhcCCCCEEEEEE
Confidence            874222111111      1489999999999999999864

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.42  E-value=4.8e-13  Score=122.86  Aligned_cols=150  Identities=11%  Similarity=0.087  Sum_probs=104.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++.    .|+.++++|+.++     +.. ++||.|++
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~-----~~~-~~fD~v~~  112 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSF-----EVP-TSIDTIVS  112 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSC-----CCC-SCCSEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhc-----CCC-CCeEEEEE
Confidence            4679999999999999999988  6799999999999999998864    5789999999876     213 78999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---CcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWL  386 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---d~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~  386 (420)
                      ...-.+....      ....+++++.++|||||.+++.+   +...........+...++...  ..+.     .     
T Consensus       113 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~-----  174 (220)
T 3hnr_A          113 TYAFHHLTDD------EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL--ANDL-----Q-----  174 (220)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHH--HHHH-----H-----
T ss_pred             CcchhcCChH------HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccc--hhhc-----c-----
Confidence            7433321111      11358999999999999999973   334444445555555554321  1110     0     


Q ss_pred             CCCCCCCCCHHHHHHHHCCCCeEE
Q 014711          387 GENSFGVRSDWEQHVIDRGAPMYR  410 (420)
Q Consensus       387 ~~~~~~~~T~~E~~~~~~G~~i~~  410 (420)
                       ........+++..+.+.|..+..
T Consensus       175 -~~~~~~~~~~~~~l~~aGf~v~~  197 (220)
T 3hnr_A          175 -TEYYTRIPVMQTIFENNGFHVTF  197 (220)
T ss_dssp             -HSCCCBHHHHHHHHHHTTEEEEE
T ss_pred             -hhhcCCHHHHHHHHHHCCCEEEE
Confidence             00112335667788888876544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.42  E-value=1.2e-12  Score=126.42  Aligned_cols=127  Identities=10%  Similarity=0.101  Sum_probs=101.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC----CCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~----l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|..+..+++..|..+++++|+++.+++.|++++...+    .+|++++++|+.+.++.    .+++||
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD  153 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNTYD  153 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSCEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh----CCCCce
Confidence            4679999999999999999988788999999999999999999876432    36899999999886432    367899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      .|++..++|+.    +...+.+.++++.+.++|+|||.+++.+..    ......+.+.+++.
T Consensus       154 ~Ii~d~~~~~~----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  212 (283)
T 2i7c_A          154 VIIVDSSDPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL  212 (283)
T ss_dssp             EEEEECCCTTT----GGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCC----cchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH
Confidence            99998888762    223455579999999999999999998643    23344555556554

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.42  E-value=2.5e-13  Score=129.46  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=80.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+|||||||+|.++..|++.+  .+|+|+|+|+.|++.|++      .+|+.++++|+.++     +.++++||.|++
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~-----~~~~~sfD~v~~  105 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDT-----GLPPASVDVAIA  105 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC------CTTEEEEECCTTCC-----CCCSSCEEEEEE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh------cCCceeehhhhhhh-----cccCCcccEEEE
Confidence            45789999999999999999884  689999999999987743      36899999999876     336899999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-.|+.         .+.+++++.|+|||||.|.+.+
T Consensus       106 ~~~~h~~~---------~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          106 AQAMHWFD---------LDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CSCCTTCC---------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeehhHhh---------HHHHHHHHHHHcCCCCEEEEEE
Confidence            75444431         1479999999999999998864

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.42  E-value=1e-12  Score=121.34  Aligned_cols=107  Identities=19%  Similarity=0.322  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-----CcEEEEEcChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-----TNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-----~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++...++     .++.++++|+..+     +..+++|
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~  102 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-----SFHDSSF  102 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-----CSCTTCE
T ss_pred             CCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-----CCCCCce
Confidence            4689999999999999999998  67999999999999999999887765     3689999999875     2257899


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      |.|++...-.+..+.  .   ....+++.+.++|||||++++.+
T Consensus       103 D~v~~~~~l~~~~~~--~---~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          103 DFAVMQAFLTSVPDP--K---ERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEEEEESCGGGCCCH--H---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEcchhhcCCCH--H---HHHHHHHHHHHHcCCCeEEEEEE
Confidence            999987433222111  1   11379999999999999999864

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.42  E-value=1.9e-12  Score=124.82  Aligned_cols=124  Identities=10%  Similarity=0.118  Sum_probs=96.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-----------CCCcEEEEEcChhhhhhhhhc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-----------~l~nv~~~~~Da~~~~~~~~~  298 (420)
                      ++.+|||||||+|.++..+++. |..+++++|+++.+++.|++++ ..           ..++++++++|+.+.+..   
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~---  149 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---  149 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc---
Confidence            4678999999999999999998 8889999999999999999987 33           235799999999876431   


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                        +++||.|++..++|+..    ...+...++++.+.++|+|||.+++.+..    ......+.+.+++.
T Consensus       150 --~~~fD~Ii~d~~~~~~~----~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  213 (281)
T 1mjf_A          150 --NRGFDVIIADSTDPVGP----AKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV  213 (281)
T ss_dssp             --CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred             --cCCeeEEEECCCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence              56899999998887622    12334568999999999999999997533    33445555556554

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.42  E-value=1.5e-12  Score=126.98  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=93.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH--hC--CCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL--SG--ITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~--~~--l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|.++..++++.|..+++++|+++.+++.|++++..  .+  .++++++++|+.+.++.    .+++||
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~----~~~~fD  170 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----NQDAFD  170 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT----CSSCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh----CCCCce
Confidence            46799999999999999999988889999999999999999998765  23  35799999999886432    367899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHH
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLE  363 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~  363 (420)
                      .|++..++|+...    ..+...++++.+.++|+|||.|++.+..    ......+.+.+++
T Consensus       171 ~Ii~d~~~~~~~~----~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~  228 (304)
T 2o07_A          171 VIITDSSDPMGPA----ESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQS  228 (304)
T ss_dssp             EEEEECC---------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCcc----hhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence            9999888775221    1233458999999999999999997622    2334445555544

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.42  E-value=1.1e-12  Score=126.42  Aligned_cols=128  Identities=13%  Similarity=0.032  Sum_probs=99.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..+++.+ +.+++|+|+|+.+++.|++++...++. +++++++|+.++     +.++++||.|+
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~  155 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-----PCEDNSYDFIW  155 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-----CCCCCCEeEEE
Confidence            46799999999999999999986 469999999999999999999888874 799999999875     22578999999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----------HH-----------HHHHHHHHHHHcCCc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----------EE-----------VMLRMKQQFLEYGKG  367 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----------~~-----------~~~~~~~~l~~~g~~  367 (420)
                      +...-.+..+        ...+++++.++|||||+|++.+-.          ..           ....+.+.+++.||.
T Consensus       156 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  227 (297)
T 2o57_A          156 SQDAFLHSPD--------KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLV  227 (297)
T ss_dssp             EESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEE
T ss_pred             ecchhhhcCC--------HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCe
Confidence            8743332211        148999999999999999987411          00           123455678888887


Q ss_pred             eeEe
Q 014711          368 KLVL  371 (420)
Q Consensus       368 ~~~~  371 (420)
                      .+.+
T Consensus       228 ~~~~  231 (297)
T 2o57_A          228 TLRT  231 (297)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6544

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.42  E-value=5.8e-13  Score=128.77  Aligned_cols=110  Identities=16%  Similarity=0.197  Sum_probs=86.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC---CcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI---TNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l---~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      +.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.|++++...++   .|+.++++|+.++     + .+++||.|
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~v  154 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-----A-LDKRFGTV  154 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-----C-CSCCEEEE
T ss_pred             CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-----C-cCCCcCEE
Confidence            458999999999999999988  57899999999999999999887664   6899999999875     2 36789998


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      ++.+.-..+...     -....+|+++.++|||||+|++.+.+...
T Consensus       155 ~~~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  195 (299)
T 3g2m_A          155 VISSGSINELDE-----ADRRGLYASVREHLEPGGKFLLSLAMSEA  195 (299)
T ss_dssp             EECHHHHTTSCH-----HHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred             EECCcccccCCH-----HHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence            764211110000     01248999999999999999998755543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.41  E-value=1.6e-12  Score=119.04  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=85.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +.+|||||||+|.++..+++..| +.+++++|+|+.+++.|++++...++. +++++++|+.+.++.    .++ ||.|+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~-fD~v~  131 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG----QRD-IDILF  131 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT----CCS-EEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc----CCC-CCEEE
Confidence            57899999999999999999988 889999999999999999999888876 599999999876431    245 99998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +..+.+           ..+.+++.+.+.|||||.+++.
T Consensus       132 ~~~~~~-----------~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          132 MDCDVF-----------NGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EETTTS-----------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EcCChh-----------hhHHHHHHHHHhcCCCeEEEEE
Confidence            873211           1248999999999999999884

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.41  E-value=1e-12  Score=121.01  Aligned_cols=105  Identities=16%  Similarity=0.199  Sum_probs=85.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|.++..+++..|  +++|+|+|+.+++.|++++...+ .+++++++|+.++     +.+++++|.|+++
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~~~~~~~D~v~~~  110 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKL-----SFEDKTFDYVIFI  110 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSC-----CSCTTCEEEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcC-----CCCCCcEEEEEEc
Confidence            67899999999999999999876  89999999999999999988776 6899999999875     1246789999987


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      .+-.+....      -...+++.+.++|||||.+++...
T Consensus       111 ~~~~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          111 DSIVHFEPL------ELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             SCGGGCCHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CchHhCCHH------HHHHHHHHHHHHcCCCcEEEEEec
Confidence            431121111      114799999999999999988753

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.41  E-value=6.5e-13  Score=123.63  Aligned_cols=128  Identities=12%  Similarity=0.079  Sum_probs=98.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +.+|||||||+|.++..+++  +..+|+|+|+|+.+++.|++++...+ ..|++|+++|+.++.      ++.+||.|++
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~fD~v~~  138 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR------PTELFDLIFD  138 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC------CSSCEEEEEE
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC------CCCCeeEEEE
Confidence            35899999999999999987  47899999999999999999987643 357999999998752      3568999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH----------HHHHHHHHHHHHcCCceeEee
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----------EVMLRMKQQFLEYGKGKLVLV  372 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~----------~~~~~~~~~l~~~g~~~~~~~  372 (420)
                      ...-.+....      ....+++.+.++|||||++++..-..          ...+++.+.+++.||..+.+.
T Consensus       139 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  205 (235)
T 3lcc_A          139 YVFFCAIEPE------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE  205 (235)
T ss_dssp             ESSTTTSCGG------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred             ChhhhcCCHH------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence            7544332211      12489999999999999999854211          114567888899998876553

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.41  E-value=1.5e-12  Score=120.42  Aligned_cols=128  Identities=15%  Similarity=0.146  Sum_probs=91.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhc-cCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVA-SYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~-~~~~~~d~  306 (420)
                      .+.+|||||||+|.+++.+|+..| +.+|+|+|+++.+++.|++++...++. +++++++|+.+.++..-. ...++||.
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            357899999999999999999864 889999999999999999999999986 599999999886443210 01268999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCC
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  366 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~  366 (420)
                      |++.....     +.   ....++++.+ +.|||||.|++..-...-.....+.+.+++.
T Consensus       138 V~~d~~~~-----~~---~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~  188 (221)
T 3u81_A          138 VFLDHWKD-----RY---LPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSS  188 (221)
T ss_dssp             EEECSCGG-----GH---HHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTT
T ss_pred             EEEcCCcc-----cc---hHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCC
Confidence            98852111     11   1112566666 9999999998842111111234555666653

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.41  E-value=1.5e-12  Score=121.64  Aligned_cols=124  Identities=14%  Similarity=0.083  Sum_probs=101.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|+|||||+|.+++.+|+..|..+++|+|+++.+++.|++|+..+++.+ +++.++|+.+.+.     +...||.|+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~-----~~~~~D~Iv   95 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE-----EADNIDTIT   95 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC-----GGGCCCEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc-----cccccCEEE
Confidence            4678999999999999999999998999999999999999999999999875 9999999987631     123699987


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +--         ....++ .+++....+.|+++|+|+++....  .+.+++.+.++||....
T Consensus        96 iaG---------mGg~lI-~~IL~~~~~~l~~~~~lIlqp~~~--~~~lr~~L~~~Gf~i~~  145 (230)
T 3lec_A           96 ICG---------MGGRLI-ADILNNDIDKLQHVKTLVLQPNNR--EDDLRKWLAANDFEIVA  145 (230)
T ss_dssp             EEE---------ECHHHH-HHHHHHTGGGGTTCCEEEEEESSC--HHHHHHHHHHTTEEEEE
T ss_pred             EeC---------CchHHH-HHHHHHHHHHhCcCCEEEEECCCC--hHHHHHHHHHCCCEEEE
Confidence            531         111222 378999999999999999987432  45688899999997654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.41  E-value=1.7e-12  Score=122.71  Aligned_cols=107  Identities=15%  Similarity=0.161  Sum_probs=87.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc--CCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~--~~~~~d  305 (420)
                      .+.+|||||||+|.+++.+|+..| +.+++++|+|+.+++.|++++.+.++. +++++++|+.+.++.....  .+++||
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  158 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  158 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence            357899999999999999999987 789999999999999999999988884 7999999998875432110  156899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|++..+.    .       ..+.+++.+.+.|||||.|++.
T Consensus       159 ~V~~d~~~----~-------~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          159 FIFVDADK----D-------NYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             EEEECSCS----T-------THHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEEcCch----H-------HHHHHHHHHHHhCCCCeEEEEe
Confidence            99885321    1       1248999999999999999874

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.41  E-value=1.8e-12  Score=126.92  Aligned_cols=134  Identities=15%  Similarity=0.125  Sum_probs=98.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|..+..+|+..+ ...++|+|+|+.+++.+++++.+.++.|+.++++|+.++..     .+++||.|+
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~-----~~~~fD~Il  192 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE-----LNVEFDKIL  192 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-----GCCCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc-----ccccCCEEE
Confidence            467999999999999999999864 58999999999999999999999999999999999988621     256899999


Q ss_pred             EeCCC---C-CCCCcch-----hh-----hhhHHHHHHHHHhhccCCeEEEEEeCc---HHHHHHHHHHHHHcCCce
Q 014711          309 IQCPN---P-DFNRPEH-----RW-----RMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpd---p-~~k~~~~-----k~-----Rl~~~~~l~~i~~~LkpgG~l~~~td~---~~~~~~~~~~l~~~g~~~  368 (420)
                      +..|-   . +.+..+.     ..     .-.+.++|+.+.+.|||||++++.|-.   ..-.+.+...++++++..
T Consensus       193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~  269 (315)
T 1ixk_A          193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL  269 (315)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred             EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence            87431   0 1111100     00     113468999999999999999997632   111122444566777543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.41  E-value=1.9e-12  Score=124.15  Aligned_cols=113  Identities=14%  Similarity=0.120  Sum_probs=87.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++. +..+++|+|+|+.+++.|++++...++ .++.++++|+.+. +  ++ .+++||.|+
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~-~~~~fD~v~  138 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-H--MD-LGKEFDVIS  138 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-C--CC-CSSCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-c--cC-CCCCcCEEE
Confidence            4689999999999999998876 556999999999999999999887776 4799999999875 1  11 367899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      +.+.-.+. ..+..   ....+++.+.++|||||++++.+.+.
T Consensus       139 ~~~~l~~~-~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          139 SQFSFHYA-FSTSE---SLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             EESCGGGG-GSSHH---HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             ECchhhhh-cCCHH---HHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            87432110 00111   12479999999999999999987553

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.40  E-value=8.1e-13  Score=124.29  Aligned_cols=100  Identities=14%  Similarity=0.097  Sum_probs=84.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.+|..+++|+|+|+.+++.|+++     ..|+.++++|+.++     + ++++||.|++
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~-----~-~~~~fD~v~~  101 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATW-----K-PAQKADLLYA  101 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTC-----C-CSSCEEEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhc-----C-ccCCcCEEEE
Confidence            45789999999999999999999999999999999999999887     45799999999875     2 4678999999


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +..-.|..+        ...+++++.++|||||++++.+
T Consensus       102 ~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          102 NAVFQWVPD--------HLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             ESCGGGSTT--------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             eCchhhCCC--------HHHHHHHHHHhcCCCeEEEEEe
Confidence            864444321        1379999999999999999976

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.40  E-value=1.8e-12  Score=122.09  Aligned_cols=102  Identities=11%  Similarity=0.173  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++ ..+..|+.++++|+.++     +.++++||.|++
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  110 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAI-----PLPDESVHGVIV  110 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccC-----CCCCCCeeEEEE
Confidence            4678999999999999999987  579999999999999999998 45567899999999765     225788999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .+.-.|..+        ...+++++.++|||||.+++.
T Consensus       111 ~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          111 VHLWHLVPD--------WPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             ESCGGGCTT--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCchhhcCC--------HHHHHHHHHHHCCCCcEEEEE
Confidence            855444321        147999999999999999886

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.40  E-value=3.8e-12  Score=119.32  Aligned_cols=126  Identities=13%  Similarity=0.129  Sum_probs=91.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.++..+|+. .|+..|+|+|+|+.+++...+.+.+.  .|+.++++|+..... + ....++||.|+
T Consensus        76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~-~-~~~~~~~D~I~  151 (232)
T 3id6_C           76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQS-Y-KSVVENVDVLY  151 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGG-T-TTTCCCEEEEE
T ss_pred             CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchh-h-hccccceEEEE
Confidence            4789999999999999999987 57889999999999987666555443  699999999986421 1 11246899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHH-HHHHHHhhccCCeEEEEEeCc---------HHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRS-LVEAVSDLLVHDGKVFLQSDI---------EEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~-~l~~i~~~LkpgG~l~~~td~---------~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ++.+.|+           +.+ ++..+.+.|||||+|++....         +..++...+.+++++|...+
T Consensus       152 ~d~a~~~-----------~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~  212 (232)
T 3id6_C          152 VDIAQPD-----------QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQ  212 (232)
T ss_dssp             ECCCCTT-----------HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEE
T ss_pred             ecCCChh-----------HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEE
Confidence            9876653           123 445566699999999986311         11234566777888876654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.40  E-value=1.5e-12  Score=126.79  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=83.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC------cEEEEEcCh------hhhhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT------NGYFIATNA------TSTFRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~------nv~~~~~Da------~~~~~~~~  297 (420)
                      .+.+|||||||+|..+..+++. ...+|+|+|+|+.|++.|++++...+..      ++.|.+.|+      .++ +..+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l-~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSV-REVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHH-HTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhh-hccc
Confidence            4678999999999877777664 2468999999999999999998776643      367888888      332 2222


Q ss_pred             ccCCCeEeEEEEeCCCCCC-CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014711          298 ASYPGKLILVSIQCPNPDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  352 (420)
Q Consensus       298 ~~~~~~~d~i~~~fpdp~~-k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~  352 (420)
                        ++++||.|++.+.-.|. ...|.      ..+++.++++|||||+|++.|-+..
T Consensus       126 --~~~~FD~V~~~~~lhy~~~~~~~------~~~l~~~~r~LkpGG~~i~~~~~~~  173 (302)
T 2vdw_A          126 --YFGKFNIIDWQFAIHYSFHPRHY------ATVMNNLSELTASGGKVLITTMDGD  173 (302)
T ss_dssp             --CSSCEEEEEEESCGGGTCSTTTH------HHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             --cCCCeeEEEECchHHHhCCHHHH------HHHHHHHHHHcCCCCEEEEEeCCHH
Confidence              46799999987643221 11111      4899999999999999999875544

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.40  E-value=4.3e-13  Score=126.47  Aligned_cols=107  Identities=14%  Similarity=0.130  Sum_probs=88.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc-CCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~-~~~~~d~  306 (420)
                      .+.+|||||||+|..++.+|+..| +.+|+++|+++.+++.|++++.+.++. |++++++|+.+.++..... .+++||.
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~  139 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF  139 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence            357899999999999999999886 889999999999999999999999986 7999999998875432210 1478999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |++..+.     .      ....+++.+.+.|||||.|++.
T Consensus       140 V~~d~~~-----~------~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          140 IFIDADK-----T------NYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEEESCG-----G------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEcCCh-----H------HhHHHHHHHHHhcCCCeEEEEE
Confidence            9886321     1      1247899999999999999984

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.40  E-value=2.1e-12  Score=120.27  Aligned_cols=105  Identities=12%  Similarity=0.174  Sum_probs=89.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++..|+.+++|+|+++.+++.|++++...++. ++.++++|+.+.++...  .+++||.|+
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~  131 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE--LYPLFDVLF  131 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT--TSCCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc--cCCCccEEE
Confidence            357899999999999999999999999999999999999999999988885 69999999988643221  256899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +..+.+           ....+++.+.+.|+|||.+++.
T Consensus       132 ~~~~~~-----------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          132 IDAAKG-----------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEGGGS-----------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ECCCHH-----------HHHHHHHHHHHHcCCCeEEEEE
Confidence            875422           1248999999999999999885

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.40  E-value=3.5e-12  Score=118.58  Aligned_cols=104  Identities=16%  Similarity=0.157  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++.. ..+++|+|+|+.+++.|+++...   .++.++++|+.++     +.++++||.|++
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~-----~~~~~~fD~v~~  113 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKL-----HLPQDSFDLAYS  113 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGC-----CCCTTCEEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhc-----cCCCCCceEEEE
Confidence            46799999999999999999873 23999999999999999887643   4799999999875     124678999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      ...-.+...        ...+++.+.++|+|||++++.+.+
T Consensus       114 ~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          114 SLALHYVED--------VARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             ESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eccccccch--------HHHHHHHHHHhcCcCcEEEEEeCC
Confidence            743222111        137999999999999999997643

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.39  E-value=1.9e-12  Score=120.42  Aligned_cols=108  Identities=12%  Similarity=0.176  Sum_probs=86.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++...+. ++.++++|+.++     + .+++||.|++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~-~~~~fD~v~~  107 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNL-----N-INRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGC-----C-CSCCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccC-----C-ccCCceEEEE
Confidence            4679999999999999999988  56899999999999999999887776 899999999875     1 2378999988


Q ss_pred             eC-CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          310 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       310 ~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      .. .-++.....     ....+++.+.++|||||.+++.+.+.
T Consensus       108 ~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A          108 CLDSTNYIIDSD-----DLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CTTGGGGCCSHH-----HHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             cCccccccCCHH-----HHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            64 222221100     12479999999999999999976543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.39  E-value=1.2e-12  Score=128.21  Aligned_cols=127  Identities=13%  Similarity=0.117  Sum_probs=93.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--C--CCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--G--ITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--~--l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|.++..+++..|..+++++|+++.+++.|++++...  +  -++++++++|+.+.++.    .+++||
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~----~~~~fD  183 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKNEFD  183 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTTCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh----cCCCce
Confidence            467899999999999999999888899999999999999999987643  3  35799999999886432    367899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      .|++..++|+..    ...+...++++.+.++|+|||.+++.+..    ......+.+.+++.
T Consensus       184 ~Ii~d~~~~~~~----~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v  242 (314)
T 2b2c_A          184 VIITDSSDPVGP----AESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI  242 (314)
T ss_dssp             EEEECCC-----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCc----chhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH
Confidence            999987777521    22344468999999999999999998633    23344455555544

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.39  E-value=6.7e-13  Score=123.22  Aligned_cols=116  Identities=12%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccC-CCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY-PGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~-~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.|+++     ..|++++++|+.+.+    +.. +++||.|+
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~----~~~~~~~fD~v~  116 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGEL----PAGLGAPFGLIV  116 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSC----CTTCCCCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhcc----CCcCCCCEEEEE
Confidence            4689999999999999999998  67999999999999999887     458999999996432    224 67999999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ++ +++.             .+++++.++|||||.++.... ....+.+.+.+.+.|+....+
T Consensus       117 ~~-~~~~-------------~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~l~~~Gf~~~~~  164 (226)
T 3m33_A          117 SR-RGPT-------------SVILRLPELAAPDAHFLYVGP-RLNVPEVPERLAAVGWDIVAE  164 (226)
T ss_dssp             EE-SCCS-------------GGGGGHHHHEEEEEEEEEEES-SSCCTHHHHHHHHTTCEEEEE
T ss_pred             eC-CCHH-------------HHHHHHHHHcCCCcEEEEeCC-cCCHHHHHHHHHHCCCeEEEE
Confidence            87 3443             688899999999999983322 122345778888999876543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=2.4e-12  Score=123.06  Aligned_cols=148  Identities=11%  Similarity=0.138  Sum_probs=103.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++  |..+++|+|+|+.+++.|+++.     .|+.++++|+.++     + .+++||.|++
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~-----~-~~~~fD~v~~  123 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNF-----R-VDKPLDAVFS  123 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTC-----C-CSSCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhC-----C-cCCCcCEEEE
Confidence            467999999999999999998  6889999999999999998875     5789999999875     2 2578999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHcCCceeEeeccccccccCCCCC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW  385 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~  385 (420)
                      ...-.|..+        ...+++++.++|||||++++.+..    ......+.+.+...++...    + +     ..  
T Consensus       124 ~~~l~~~~d--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-----~~--  183 (279)
T 3ccf_A          124 NAMLHWVKE--------PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNP----Q-A-----LN--  183 (279)
T ss_dssp             ESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCG----G-G-----GC--
T ss_pred             cchhhhCcC--------HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccc----c-C-----cC--
Confidence            754333221        137999999999999999987532    2333334444455443210    0 0     00  


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCeEEEE
Q 014711          386 LGENSFGVRSDWEQHVIDRGAPMYRLM  412 (420)
Q Consensus       386 ~~~~~~~~~T~~E~~~~~~G~~i~~~~  412 (420)
                        ........+++..+.+.|+.+....
T Consensus       184 --~~~~~~~~~~~~~l~~aGf~~~~~~  208 (279)
T 3ccf_A          184 --PWYFPSIGEYVNILEKQGFDVTYAA  208 (279)
T ss_dssp             --CCCCCCHHHHHHHHHHHTEEEEEEE
T ss_pred             --ceeCCCHHHHHHHHHHcCCEEEEEE
Confidence              0112233556777788887765543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.39  E-value=1.7e-12  Score=115.44  Aligned_cols=126  Identities=13%  Similarity=0.193  Sum_probs=92.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++..   +++|+|+|+.+++.         ..|++++++|+.+.+      .+++||.|++
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~------~~~~fD~i~~   84 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---------HRGGNLVRADLLCSI------NQESVDVVVF   84 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---------CSSSCEEECSTTTTB------CGGGCSEEEE
T ss_pred             CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---------ccCCeEEECChhhhc------ccCCCCEEEE
Confidence            35799999999999999999986   99999999999986         357899999997642      3578999998


Q ss_pred             eCCCCCCCCcc-hhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecc
Q 014711          310 QCPNPDFNRPE-HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD  374 (420)
Q Consensus       310 ~fpdp~~k~~~-~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D  374 (420)
                      +.|--|..... .........+++++.+.| |||.+++.+......+.+.+.+++.||....+..+
T Consensus        85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~  149 (170)
T 3q87_B           85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVR  149 (170)
T ss_dssp             CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEee
Confidence            74322211110 000000126788888888 99999997755566778889999999987655443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.39  E-value=2.4e-12  Score=123.42  Aligned_cols=117  Identities=14%  Similarity=0.181  Sum_probs=90.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|..+..+|+..++ .+++|+|+|+.+++.+++++.+.+++|+.++++|+.++... +...+++||.|+
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~~fD~Vl  161 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY-LLKNEIFFDKIL  161 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH-HHHTTCCEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh-hhhccccCCEEE
Confidence            4679999999999999999998766 89999999999999999999999999999999999887321 111256899998


Q ss_pred             EeCCCCCCCC----cchh--------hhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCPNPDFNR----PEHR--------WRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp~~k~----~~~k--------~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +.-|  +...    +++.        ..-.+.++++.+.+.|||||++++.|.
T Consensus       162 ~d~P--cs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          162 LDAP--CSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             EEEC--CC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EcCC--CCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            8732  2110    0000        012346899999999999999999763

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.39  E-value=3.1e-12  Score=118.49  Aligned_cols=105  Identities=14%  Similarity=0.117  Sum_probs=84.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.+++++...  .|++++++|+.+.. ...+ .+.+||.|+
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~-~~~~-~~~~~D~v~  148 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPE-EYRA-LVPKVDVIF  148 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGG-GGTT-TCCCEEEEE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcc-hhhc-ccCCceEEE
Confidence            46799999999999999999885 6789999999999999999988654  78999999998742 1111 245899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +..+.|+          ....++..+.+.|||||++++..
T Consensus       149 ~~~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          149 EDVAQPT----------QAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             ECCCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCHh----------HHHHHHHHHHHhcCCCCEEEEEE
Confidence            8766443          11255899999999999999863

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.39  E-value=3.3e-12  Score=119.82  Aligned_cols=107  Identities=16%  Similarity=0.164  Sum_probs=88.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc--CCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~--~~~~~d  305 (420)
                      ++.+|||||||+|..++.+|+..| +.+++++|+++.+++.|++++.+.++. +++++++|+.+.++.....  .+++||
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  149 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD  149 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence            357899999999999999999987 799999999999999999999998986 5999999998875433211  146899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|++.   .+.  .      ....+++.+.+.|+|||.+++.
T Consensus       150 ~I~~d---~~~--~------~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          150 FGFVD---ADK--P------NYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             EEEEC---SCG--G------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEC---Cch--H------HHHHHHHHHHHhcCCCeEEEEe
Confidence            99874   321  1      1358999999999999999884

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.38  E-value=1.2e-12  Score=119.75  Aligned_cols=122  Identities=11%  Similarity=0.070  Sum_probs=94.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++      ++.+.++|+..+     + .+++||.|++
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~-----~-~~~~fD~v~~  108 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQL-----D-AIDAYDAVWA  108 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGC-----C-CCSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccC-----C-CCCcEEEEEe
Confidence            3679999999999999999988  679999999999999999886      567889998776     2 4789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH--------------HHHHHHHHHHHcC-CceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--------------VMLRMKQQFLEYG-KGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~--------------~~~~~~~~l~~~g-~~~~~~  371 (420)
                      ...-.+...      --...+++++.++|||||++++.+....              -.+++.+.+++.| |..+.+
T Consensus       109 ~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~  179 (211)
T 3e23_A          109 HACLLHVPR------DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV  179 (211)
T ss_dssp             CSCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred             cCchhhcCH------HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence            743222110      0114799999999999999999742211              2456788888889 887654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.38  E-value=7e-12  Score=125.94  Aligned_cols=134  Identities=15%  Similarity=0.103  Sum_probs=99.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +..|||+|||+|.+++.+|+.  ..+|+|+|+|+.+++.|++++..+++.|++|+++|+.+.++.... .+.+||.|++.
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~-~~~~fD~Ii~d  286 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK-EGERFDLVVLD  286 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-TTCCEEEEEEC
T ss_pred             CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh-cCCCeeEEEEC
Confidence            578999999999999999998  678999999999999999999999999999999999987543221 25689999885


Q ss_pred             CCCCCCCCcchhhh--hhHHHHHHHHHhhccCCeEEEEEeCcH-----HHHHHHHHHHHHcCCce
Q 014711          311 CPNPDFNRPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       311 fpdp~~k~~~~k~R--l~~~~~l~~i~~~LkpgG~l~~~td~~-----~~~~~~~~~l~~~g~~~  368 (420)
                       |.-+.+......+  -...+++..+.+.|+|||.+++.+...     .+.+.+.+.+.+.+...
T Consensus       287 -pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  350 (382)
T 1wxx_A          287 -PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL  350 (382)
T ss_dssp             -CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             -CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence             2112211111111  123579999999999999999987542     23334445666766543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.38  E-value=1.3e-11  Score=112.32  Aligned_cols=123  Identities=15%  Similarity=0.089  Sum_probs=96.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++...++ |+.++++|+.++        +.+||.|++
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~--------~~~~D~v~~  118 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF--------NSRVDIVIM  118 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC--------CCCCSEEEE
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHc--------CCCCCEEEE
Confidence            46789999999999999999873 34899999999999999999988888 899999999875        348999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +.  |++..+.    -....+++.+.+.|  |+.+.+.+..+...+.+.+.+.+.|+....
T Consensus       119 ~~--p~~~~~~----~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  171 (207)
T 1wy7_A          119 NP--PFGSQRK----HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTH  171 (207)
T ss_dssp             CC--CCSSSST----TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred             cC--CCccccC----CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence            73  3322221    12347888999988  666655555666677788888998876543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.38  E-value=3.1e-12  Score=120.52  Aligned_cols=123  Identities=15%  Similarity=0.104  Sum_probs=99.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.+++.+|+..|...++|+|+++.+++.|++|+..+++.| +.+.++|+.+.+.     +...||.|+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~-----~~~~~D~Iv   95 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE-----KKDAIDTIV   95 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC-----GGGCCCEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC-----ccccccEEE
Confidence            4678999999999999999999998999999999999999999999999975 9999999987631     123599987


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      +.-         ....++ .+++....+.|+++++|+++...  -...+++.+.++||...
T Consensus        96 iag---------mGg~lI-~~IL~~~~~~L~~~~~lIlq~~~--~~~~lr~~L~~~Gf~i~  144 (244)
T 3gnl_A           96 IAG---------MGGTLI-RTILEEGAAKLAGVTKLILQPNI--AAWQLREWSEQNNWLIT  144 (244)
T ss_dssp             EEE---------ECHHHH-HHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHHTEEEE
T ss_pred             EeC---------CchHHH-HHHHHHHHHHhCCCCEEEEEcCC--ChHHHHHHHHHCCCEEE
Confidence            631         111222 37899999999999999998743  24568889999998763

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.38  E-value=2.6e-12  Score=123.19  Aligned_cols=104  Identities=12%  Similarity=0.087  Sum_probs=86.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.|++++...++ |++++++|+.+..      .+++||.|++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~------~~~~fD~i~~  190 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAAN------IQENYDFIVS  190 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCC------CCSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEecccccc------ccCCccEEEE
Confidence            4689999999999999999998  67999999999999999999998888 9999999998751      2678999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +.+-.+...      -....+++.+.+.|+|||.+++.+
T Consensus       191 ~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          191 TVVFMFLNR------ERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CSSGGGSCG------GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccchhhCCH------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            743222111      112489999999999999988764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.38  E-value=1.6e-12  Score=118.76  Aligned_cols=100  Identities=17%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++...+++|++++++|+.+...     .+++||.|++
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~D~i~~  149 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-----ARAPFDAIIV  149 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-----cCCCccEEEE
Confidence            4689999999999999999998  68999999999999999999999999999999999987521     3578999999


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      ...-++.              .+.+.+.|||||++++....
T Consensus       150 ~~~~~~~--------------~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          150 TAAPPEI--------------PTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SSBCSSC--------------CTHHHHTEEEEEEEEEEECS
T ss_pred             ccchhhh--------------hHHHHHhcccCcEEEEEEcC
Confidence            7544431              12468899999999998754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.38  E-value=3.7e-12  Score=115.92  Aligned_cols=112  Identities=12%  Similarity=0.110  Sum_probs=88.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.++..+++..+. +++|+|+|+.+++.|+++...  ..++.++++|+.++     +..+++||.|++
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~-----~~~~~~fD~v~~  113 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKL-----DFPSASFDVVLE  113 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSC-----CSCSSCEEEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcC-----CCCCCcccEEEE
Confidence            4678999999999999999998654 899999999999999998753  45899999999875     224678999987


Q ss_pred             eC---------CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          310 QC---------PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       310 ~f---------pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      +.         ++||....++..  ....+++++.++|||||.+++.+-..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          114 KGTLDALLAGERDPWTVSSEGVH--TVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             ESHHHHHTTTCSCTTSCCHHHHH--HHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CcchhhhccccccccccccchhH--HHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            53         345544332221  12589999999999999999987543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.37  E-value=1.9e-12  Score=120.98  Aligned_cols=123  Identities=16%  Similarity=0.177  Sum_probs=93.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.  +.+++|+|+|+.+++.|+++        +.++++|+.+.+.. +  ++++||.|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~-~--~~~~fD~i~~  107 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKS-L--PDKYLDGVMI  107 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHT-S--CTTCBSEEEE
T ss_pred             CCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhh-c--CCCCeeEEEE
Confidence            3578999999999999999998  56899999999999988765        68999999886422 2  5789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH------------------HHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV------------------MLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~------------------~~~~~~~l~~~g~~~~~~  371 (420)
                      ...-.+....      ....+++++.++|||||++++.+.+...                  .+.+.+.+++.||..+.+
T Consensus       108 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~  181 (240)
T 3dli_A          108 SHFVEHLDPE------RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI  181 (240)
T ss_dssp             ESCGGGSCGG------GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred             CCchhhCCcH------HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence            7433222111      1148999999999999999998633211                  245777888888876544

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.37  E-value=1.7e-12  Score=118.88  Aligned_cols=106  Identities=13%  Similarity=0.102  Sum_probs=84.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++..  .+++|+|+|+.+++.|++++...  .|++++++|+.++.      ++++||.|++
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~------~~~~fD~v~~  120 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFS------TAELFDLIVV  120 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCC------CSCCEEEEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCC------CCCCccEEEE
Confidence            45789999999999999999984  58999999999999999987653  38999999998762      4788999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      +..-.+..+..     ....+++++.++|||||.+++.+..
T Consensus       121 ~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          121 AEVLYYLEDMT-----QMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             ESCGGGSSSHH-----HHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccHHHhCCCHH-----HHHHHHHHHHHHcCCCCEEEEEecC
Confidence            74433322111     1136899999999999999997643

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.37  E-value=4.4e-12  Score=117.40  Aligned_cols=106  Identities=16%  Similarity=0.115  Sum_probs=87.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCC--CeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYP--GKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~--~~~d  305 (420)
                      .+.+|||||||+|.++..+++..| +.+++++|+++.+++.|++++...++ .+++++++|+.+.++.... ..  ++||
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~-~~~~~~~D  147 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTFD  147 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH-TTCTTCEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHh-cCCCCCcc
Confidence            357899999999999999999877 78999999999999999999998887 5799999999876543321 11  6899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|++..+..           ....+++.+.+.|+|||.+++.
T Consensus       148 ~v~~d~~~~-----------~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          148 VAVVDADKE-----------NCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EEEECSCST-----------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCHH-----------HHHHHHHHHHHHcCCCeEEEEE
Confidence            998853211           1247899999999999999884

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.36  E-value=5.1e-12  Score=118.24  Aligned_cols=108  Identities=16%  Similarity=0.176  Sum_probs=88.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhc---------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVA---------  298 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~---------  298 (420)
                      .+.+|||||||+|.++..+++..| ..+++++|+++.+++.|++++...++.| +.++++|+.+.++....         
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            367899999999999999999987 7899999999999999999999888876 99999999876443210         


Q ss_pred             -cCC--CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          299 -SYP--GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       299 -~~~--~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                       +++  ++||.|++.+..+           ..+.+++.+.+.|+|||.+++..
T Consensus       140 ~f~~~~~~fD~I~~~~~~~-----------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLDADKE-----------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TTCCSTTCEEEEEECSCGG-----------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccCCCCCcCEEEEeCCHH-----------HHHHHHHHHHHHcCCCeEEEEEc
Confidence             012  7899998863211           12478999999999999999853

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.36  E-value=3.6e-12  Score=119.57  Aligned_cols=106  Identities=15%  Similarity=0.237  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.|++++...+. ++.++++|+.++.      .++++|.|++
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~------~~~~fD~v~~  111 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIA------FKNEFDAVTM  111 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCC------CCSCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcc------cCCCccEEEE
Confidence            4579999999999999999987  67999999999999999999887775 7999999998751      2468999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      .+....+...     -....+++.+.++|+|||.+++.+.
T Consensus       112 ~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          112 FFSTIMYFDE-----EDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             CSSGGGGSCH-----HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCchhcCCH-----HHHHHHHHHHHHHcCCCeEEEEecc
Confidence            6543321110     1124789999999999999998653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.36  E-value=4.9e-12  Score=113.03  Aligned_cols=125  Identities=11%  Similarity=0.120  Sum_probs=95.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+|+.+++.++++.     +|+.++++|+.+.     +.+++++|.|++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~-----~~~~~~~D~i~~  113 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVD-----QISETDFDLIVS  113 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTS-----CCCCCCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccC-----CCCCCceeEEEE
Confidence            4689999999999999999988  679999999999999998875     4689999999875     124678999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH--HHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--VMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~--~~~~~~~~l~~~g~~~~~~  371 (420)
                      +.+--++..     .-....+++.+.+.|+|||.+++.+....  ..+.+.+.+++.|+.....
T Consensus       114 ~~~~~~~~~-----~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  172 (195)
T 3cgg_A          114 AGNVMGFLA-----EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENA  172 (195)
T ss_dssp             CCCCGGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEE
T ss_pred             CCcHHhhcC-----hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeee
Confidence            522111111     00124799999999999999999764322  2456788889999876554

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.36  E-value=2.7e-12  Score=117.29  Aligned_cols=102  Identities=13%  Similarity=0.077  Sum_probs=82.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|++    .+..|+.++++|+.++    +  ++++||.|++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~----~--~~~~~D~v~~  113 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW----T--PDRQWDAVFF  113 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC----C--CSSCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC----C--CCCceeEEEE
Confidence            3569999999999999999998  6799999999999999977    5667899999999775    2  5789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ...-.+...      -....+++++.++|||||.+++.+.
T Consensus       114 ~~~l~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          114 AHWLAHVPD------DRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             ESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             echhhcCCH------HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            743222111      0114799999999999999999753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.36  E-value=5.9e-12  Score=122.64  Aligned_cols=104  Identities=15%  Similarity=0.214  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++.+ +.+++|+|+|+.+++.|++++...++. ++.++++|+.++        +++||.|+
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~fD~v~  160 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------AEPVDRIV  160 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--------CCCCSEEE
T ss_pred             CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--------CCCcCEEE
Confidence            46799999999999999999987 569999999999999999999888875 599999999764        36899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+....      ....+++++.++|||||++++.+
T Consensus       161 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          161 SIEAFEHFGHE------NYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             EESCGGGTCGG------GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EeChHHhcCHH------HHHHHHHHHHHhcCCCcEEEEEE
Confidence            87432221111      11489999999999999999864

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.35  E-value=2.1e-12  Score=117.44  Aligned_cols=106  Identities=10%  Similarity=0.096  Sum_probs=82.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++...+ .++.++++|+.++     +.++++||.|++
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~~~~~~fD~v~~   95 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKL-----PFKDESMSFVYS   95 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhC-----CCCCCceeEEEE
Confidence            3679999999999986655544 56899999999999999999988766 4799999999875     224678999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-.+..      .-....+++++.++|||||.+++.+
T Consensus        96 ~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           96 YGTIFHMR------KNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             CSCGGGSC------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChHHhCC------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            63222110      0112479999999999999999875

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.35  E-value=6.2e-12  Score=117.47  Aligned_cols=106  Identities=17%  Similarity=0.162  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCC--CeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYP--GKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~--~~~d  305 (420)
                      .+.+|||||||+|.++..+|+..| +.+++++|+++.+++.|++++.+.++. +++++++|+.+.++... ..+  ++||
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~-~~~~~~~fD  150 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLT-QGKPLPEFD  150 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH-TSSSCCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH-hcCCCCCcC
Confidence            357899999999999999999987 789999999999999999999988885 59999999987654332 123  7899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|++..+.+           ....+++.+.+.|+|||.+++.
T Consensus       151 ~V~~d~~~~-----------~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          151 LIFIDADKR-----------NYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EEEECSCGG-----------GHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEECCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence            998753211           1247899999999999999984

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.35  E-value=7e-12  Score=113.61  Aligned_cols=100  Identities=11%  Similarity=0.070  Sum_probs=83.1

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  312 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp  312 (420)
                      +|||||||+|.++..+++.  ..+++|+|+|+.+++.|++++...+. ++.++++|+.++     +.++++||.|++.+.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADF-----DIVADAWEGIVSIFC  103 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTB-----SCCTTTCSEEEEECC
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhc-----CCCcCCccEEEEEhh
Confidence            9999999999999999987  57999999999999999999888776 899999999875     124678999988642


Q ss_pred             CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          313 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       313 dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                        +.   +..   ....+++.+.++|||||.+++.+
T Consensus       104 --~~---~~~---~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          104 --HL---PSS---LRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             --CC---CHH---HHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             --cC---CHH---HHHHHHHHHHHhcCCCcEEEEEE
Confidence              11   111   12479999999999999999975

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.35  E-value=7.4e-12  Score=114.75  Aligned_cols=102  Identities=21%  Similarity=0.297  Sum_probs=80.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|+++      .++.+.+.|+.++....+. .+.+||.|++
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~-~~~~fD~v~~  122 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVP-VGKDYDLICA  122 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSC-CCCCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccc-cCCCccEEEE
Confidence            3588999999999999999988  67999999999999999876      4678899999886322121 3456999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      .+.-.+ .  ..      ..+++.+.++|||||++++.+.
T Consensus       123 ~~~l~~-~--~~------~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          123 NFALLH-Q--DI------IELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             ESCCCS-S--CC------HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             Cchhhh-h--hH------HHHHHHHHHHhCCCeEEEEEec
Confidence            743221 1  11      3799999999999999999764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.34  E-value=3.7e-12  Score=116.70  Aligned_cols=102  Identities=19%  Similarity=0.204  Sum_probs=85.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..+++.. |+.+++|+|+|+.+++.|++++...+++|+.+.++|+...++     .+++||.|+
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~v~  151 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-----PLAPYDRIY  151 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-----GGCCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-----CCCCeeEEE
Confidence            46799999999999999999987 778999999999999999999998898899999999854321     256899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      +..+-++              +.+.+.+.|||||++++.+..
T Consensus       152 ~~~~~~~--------------~~~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          152 TTAAGPK--------------IPEPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             ESSBBSS--------------CCHHHHHTEEEEEEEEEEESS
T ss_pred             ECCchHH--------------HHHHHHHHcCCCcEEEEEECC
Confidence            8754443              124678999999999998754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.33  E-value=7.7e-13  Score=124.72  Aligned_cols=115  Identities=14%  Similarity=0.067  Sum_probs=84.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHh---CCCc-----------------------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLS---GITN-----------------------  281 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~---~l~n-----------------------  281 (420)
                      .+.+|||+|||+|.+++.+++.  .|..+++|+|+|+.+++.|++++...   ++++                       
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            3578999999999999999998  78889999999999999999988765   4432                       


Q ss_pred             ---EE-------------EEEcChhhhhhhh-hccCCCeEeEEEEeCCCCCCCCcchh---hhhhHHHHHHHHHhhccCC
Q 014711          282 ---GY-------------FIATNATSTFRSI-VASYPGKLILVSIQCPNPDFNRPEHR---WRMVQRSLVEAVSDLLVHD  341 (420)
Q Consensus       282 ---v~-------------~~~~Da~~~~~~~-~~~~~~~~d~i~~~fpdp~~k~~~~k---~Rl~~~~~l~~i~~~Lkpg  341 (420)
                         ++             |+++|+.+..... +. ...+||.|+++.  |+....+..   ..-....+++.+.++|+||
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~Iv~np--p~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDL--PYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEEC--CGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhccccccccccceeeccccccccccccc-CCCCceEEEeCC--CeeccccccccccccHHHHHHHHHHHhcCCC
Confidence               66             9999987752100 00 234799999873  332111110   0122358999999999999


Q ss_pred             eEEEEE
Q 014711          342 GKVFLQ  347 (420)
Q Consensus       342 G~l~~~  347 (420)
                      |++++.
T Consensus       208 G~l~~~  213 (250)
T 1o9g_A          208 AVIAVT  213 (250)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            999994

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.33  E-value=3.3e-12  Score=122.68  Aligned_cols=119  Identities=8%  Similarity=0.052  Sum_probs=87.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC----CCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~----l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      .+.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.|++++...+    ..++.+.++|+..+..+++  .+++||
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~fD  132 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP--AGDGFD  132 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC--CTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc--cCCCeE
Confidence            4678999999999999999998  4599999999999999999875443    2468999999988732333  578999


Q ss_pred             EEEEe-CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          306 LVSIQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       306 ~i~~~-fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      .|++. ..-.+...... ..-....++++++++|||||+|++.+.+..+
T Consensus       133 ~V~~~g~~l~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  180 (293)
T 3thr_A          133 AVICLGNSFAHLPDSKG-DQSEHRLALKNIASMVRPGGLLVIDHRNYDY  180 (293)
T ss_dssp             EEEECTTCGGGSCCSSS-SSHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred             EEEEcChHHhhcCcccc-CHHHHHHHHHHHHHHcCCCeEEEEEeCCHHH
Confidence            99885 22211111000 0001248999999999999999998765443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.32  E-value=7.8e-12  Score=120.59  Aligned_cols=110  Identities=11%  Similarity=0.099  Sum_probs=80.3

Q ss_pred             CCEEEEEcCCccHHHH----HHHHhCCCCeE--EEEeCChHHHHHHHHHhHHh-CCCcEEE--EEcChhhhhhhh-hccC
Q 014711          231 QPLVVDIGSGNGLFLL----GMARKRKDLNF--LGLEVNGKLVTHCRDSLQLS-GITNGYF--IATNATSTFRSI-VASY  300 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~----~lA~~~P~~~v--iGiDis~~~i~~A~~~~~~~-~l~nv~~--~~~Da~~~~~~~-~~~~  300 (420)
                      +.+|||||||+|.++.    .++.++|+..+  +|+|.|+.|++.|++++... +++|+.+  .++++.++...+ .++.
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE  132 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence            5689999999998654    44556688854  99999999999999998653 5677654  566776542111 0124


Q ss_pred             CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +++||.|++.+.-.|..+.        ..+|++++++|||||+|++..
T Consensus       133 ~~~fD~V~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          133 LQKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             CCCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEeeeeeecCCH--------HHHHHHHHHHcCCCcEEEEEE
Confidence            7889999988544443221        379999999999999999864

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.32  E-value=2.3e-11  Score=122.79  Aligned_cols=135  Identities=12%  Similarity=0.114  Sum_probs=99.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-C-cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-T-NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~-nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||+|||+|.+++.+|+.. ..+|+|+|+|+.+++.|++++..+++ + |++|+++|+.+.++.... ...+||.|
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~-~~~~fD~I  297 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFDVI  297 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH-TTCCEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh-cCCCCCEE
Confidence            46899999999999999999874 46899999999999999999999998 7 899999999987543221 24689999


Q ss_pred             EEeCCCCCCCC-cchhh--hhhHHHHHHHHHhhccCCeEEEEEeCcH-----HHHHHHHHHHHHcCCce
Q 014711          308 SIQCPNPDFNR-PEHRW--RMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       308 ~~~fpdp~~k~-~~~k~--Rl~~~~~l~~i~~~LkpgG~l~~~td~~-----~~~~~~~~~l~~~g~~~  368 (420)
                      ++.-  |.+.. .....  .-...+++..+.+.|+|||.+++.+...     .+.+.+.+.+.+.|...
T Consensus       298 i~dp--P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  364 (396)
T 3c0k_A          298 VMDP--PKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV  364 (396)
T ss_dssp             EECC--SSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred             EECC--CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence            8862  32211 10000  0122578999999999999999987542     23333445677777544

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.32  E-value=1.3e-11  Score=121.73  Aligned_cols=113  Identities=12%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc--EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n--v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +.+|||+|||+|.+++.+|+..  .+|+|+|+|+.+++.|++++..+++.|  ++++++|+.+++..... ...+||.|+
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~-~~~~fD~Ii  230 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER-RGSTYDIIL  230 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH-HTCCBSEEE
T ss_pred             CCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh-cCCCceEEE
Confidence            5789999999999999999873  499999999999999999999999875  99999999987532210 146899998


Q ss_pred             EeCCCCCCCCc----chhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRP----EHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~----~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++-  |.+...    .....-....+++.+.++|+|||.|++.+
T Consensus       231 ~dP--P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          231 TDP--PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             ECC--CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             ECC--ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            852  211110    00000112588999999999999977754

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.32  E-value=2e-11  Score=122.30  Aligned_cols=128  Identities=16%  Similarity=0.171  Sum_probs=96.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||+|||+|.+++.+|+..+..+++|+|+|+.+++.|++++...|+ .+++|.++|+.++.     .+++++|.|+
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~-----~~~~~fD~Ii  291 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS-----QYVDSVDFAI  291 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG-----GTCSCEEEEE
T ss_pred             CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-----cccCCcCEEE
Confidence            46789999999999999999998777999999999999999999999998 58999999998862     1467899999


Q ss_pred             EeCCCCCCCCc--chhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014711          309 IQCPNPDFNRP--EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       309 ~~fpdp~~k~~--~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      ++  .|+....  .....-+++++++.+.++|  +|.+++.+.....   +.+.+.+.|+...
T Consensus       292 ~n--pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~---~~~~~~~~G~~~~  347 (373)
T 3tm4_A          292 SN--LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKA---IEEAIAENGFEII  347 (373)
T ss_dssp             EE--CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHH---HHHHHHHTTEEEE
T ss_pred             EC--CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHH---HHHHHHHcCCEEE
Confidence            98  4443221  1111223468999999999  5555555544443   4456777787653

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=9.1e-12  Score=116.41  Aligned_cols=107  Identities=12%  Similarity=0.089  Sum_probs=81.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhh-hhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRS-IVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~-~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..+++..+  +|+|+|+|+.+++.|++++   ...|++++++|+.+.... .++ ....+|.|+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~-~~~~~d~v~  129 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIH-SEIGDANIY  129 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHH-HHHCSCEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccc-cccCccEEE
Confidence            357899999999999999999976  8999999999999999986   335899999999886311 110 113488998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+.....      ...+++++.++|||||++++..
T Consensus       130 ~~~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          130 MRTGFHHIPVEK------RELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             EESSSTTSCGGG------HHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EcchhhcCCHHH------HHHHHHHHHHHcCCCCEEEEEe
Confidence            875444322111      1489999999999999977753

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.32  E-value=2.1e-11  Score=122.67  Aligned_cols=134  Identities=11%  Similarity=0.132  Sum_probs=96.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||+|||+|.+++.+|+.. ...|+|+|+|+.+++.|++|+..++++  |++|+++|+.+.++.... ...+||.|
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~-~~~~fD~I  289 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-HHLTYDII  289 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-TTCCEEEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH-hCCCccEE
Confidence            46799999999999999999862 348999999999999999999999987  899999999987543321 24589999


Q ss_pred             EEeCCCCCCCC---cchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH-----HHHHHHHHHHHcCCc
Q 014711          308 SIQCPNPDFNR---PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----VMLRMKQQFLEYGKG  367 (420)
Q Consensus       308 ~~~fpdp~~k~---~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~-----~~~~~~~~l~~~g~~  367 (420)
                      ++.  .|.+..   ......-...++++.+.+.|+|||.+++.+....     +.+.+.+.+...+..
T Consensus       290 i~D--PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          290 IID--PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             EEC--CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             EEC--CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            885  233211   1111111124688899999999999999875432     233334445555554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.32  E-value=1.5e-11  Score=126.11  Aligned_cols=132  Identities=14%  Similarity=0.123  Sum_probs=99.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|..++.+|+..+ ...++++|+|+.+++.+++++++.|+.|+.++++|+..+. ..+   +++||.|+
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-~~~---~~~FD~Il  180 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-PHF---SGFFDRIV  180 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-HHH---TTCEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-hhc---cccCCEEE
Confidence            468999999999999999999865 4799999999999999999999999999999999998873 222   57899999


Q ss_pred             EeCCCCCCC----Ccchhh------------hhhHHHHHHHHHhhccCCeEEEEEeCc---HHHHHHHHHHHHHcCCc
Q 014711          309 IQCPNPDFN----RPEHRW------------RMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       309 ~~fpdp~~k----~~~~k~------------Rl~~~~~l~~i~~~LkpgG~l~~~td~---~~~~~~~~~~l~~~g~~  367 (420)
                      +.-  |+.-    .+++..            .-++.++|+.+.+.|||||+|+..|..   +.--+.+...++++++.
T Consensus       181 ~Da--PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~  256 (456)
T 3m4x_A          181 VDA--PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVT  256 (456)
T ss_dssp             EEC--CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             ECC--CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCE
Confidence            873  3211    111111            113468999999999999999987742   11122344556777743

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.32  E-value=3e-11  Score=121.87  Aligned_cols=133  Identities=16%  Similarity=0.141  Sum_probs=97.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.+++.+|+. +..+++|+|+|+.+++.|++++..++++ |++|+++|+.+.++.+.. ...+||.|+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK-KGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh-hCCCCCEEE
Confidence            4689999999999999999987 4568999999999999999999999987 899999999887543221 256899998


Q ss_pred             EeCCCCCCCC-cchhhh--hhHHHHHHHHHhhccCCeEEEEEeCcH-----HHHHHHHHHHHHcCC
Q 014711          309 IQCPNPDFNR-PEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGK  366 (420)
Q Consensus       309 ~~fpdp~~k~-~~~k~R--l~~~~~l~~i~~~LkpgG~l~~~td~~-----~~~~~~~~~l~~~g~  366 (420)
                      ++  .|.+.. ......  -...+++..+.+.|+|||.+++.+...     .+.+.+.+.+...+.
T Consensus       295 ~d--pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~  358 (396)
T 2as0_A          295 LD--PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGK  358 (396)
T ss_dssp             EC--CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTE
T ss_pred             EC--CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            85  232221 111111  123578999999999999999887542     223334445555553

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.32  E-value=6e-12  Score=113.81  Aligned_cols=101  Identities=13%  Similarity=0.096  Sum_probs=80.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ....|||+|||+|.+++.++...|+.+|+|+|+|+.|++.+++++...|.. |+++  .|.....      +++++|.|.
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~------~~~~~DvVL  120 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV------YKGTYDVVF  120 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH------TTSEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC------CCCCcChhh
Confidence            367899999999999999999999999999999999999999999999988 6887  5554431      478999998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      .+-      --|.- +-. +..+..+.+.|+|||.|+-
T Consensus       121 a~k------~LHlL-~~~-~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          121 LLK------MLPVL-KQQ-DVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             EET------CHHHH-HHT-TCCHHHHHHTCEEEEEEEE
T ss_pred             Hhh------HHHhh-hhh-HHHHHHHHHHhCCCCEEEE
Confidence            872      22221 101 2345589999999998864

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.31  E-value=5.6e-12  Score=116.59  Aligned_cols=105  Identities=25%  Similarity=0.332  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-----CCCeEEEEeCChHHHHHHHHHhHHhC-----CCcEEEEEcChhhhhhhhhcc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVAS  299 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-----P~~~viGiDis~~~i~~A~~~~~~~~-----l~nv~~~~~Da~~~~~~~~~~  299 (420)
                      ++.+|||||||+|.++..+++..     |+.+++|+|+++.+++.|++++...+     ..|+.++++|+.+..+.... 
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  158 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK-  158 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH-
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc-
Confidence            36799999999999999999985     67899999999999999999998887     67899999999875211000 


Q ss_pred             CCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          300 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       300 ~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ..++||.|++..+-++              +++.+.+.|||||++++.+.
T Consensus       159 ~~~~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          159 ELGLFDAIHVGASASE--------------LPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHCCEEEEEECSBBSS--------------CCHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCchHH--------------HHHHHHHhcCCCcEEEEEEc
Confidence            2467999988754332              45778899999999999764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.31  E-value=9.1e-12  Score=115.77  Aligned_cols=108  Identities=15%  Similarity=0.258  Sum_probs=85.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|.++..+++.   .+++|+|+|+.+++.|++++...+ .++.++++|+.++     + .++++|.|++.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~-~~~~fD~v~~~  103 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMREL-----E-LPEPVDAITIL  103 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGC-----C-CSSCEEEEEEC
T ss_pred             CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhc-----C-CCCCcCEEEEe
Confidence            578999999999999999887   799999999999999999987766 5799999999875     1 24789999886


Q ss_pred             C-CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          311 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       311 f-pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      + .-.+....     -....+++++.++|||||.+++.+.....
T Consensus       104 ~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  142 (243)
T 3d2l_A          104 CDSLNYLQTE-----ADVKQTFDSAARLLTDGGKLLFDVHSPYK  142 (243)
T ss_dssp             TTGGGGCCSH-----HHHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             CCchhhcCCH-----HHHHHHHHHHHHhcCCCeEEEEEcCCHHH
Confidence            3 21221110     11247899999999999999997765443

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.31  E-value=1.4e-11  Score=122.65  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=84.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...++. +++|+++|+.+.    +   +..+|.|+
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---~~~~D~v~  253 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----L---PVTADVVL  253 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C---SCCEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----C---CCCCCEEE
Confidence            468999999999999999999999999999999 99999999999888876 799999999753    2   23499998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.++.+      .....+++++.++|+|||++++..
T Consensus       254 ~~~vl~~~~~------~~~~~~l~~~~~~L~pgG~l~i~e  287 (374)
T 1qzz_A          254 LSFVLLNWSD------EDALTILRGCVRALEPGGRLLVLD  287 (374)
T ss_dssp             EESCGGGSCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeccccCCCH------HHHHHHHHHHHHhcCCCcEEEEEe
Confidence            8632211100      011379999999999999988753

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.31  E-value=4.4e-12  Score=119.95  Aligned_cols=100  Identities=14%  Similarity=0.208  Sum_probs=79.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++..  .+++|+|+|+.+++.|+++..     ++.++++|+.++     + .+++||.|++
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~-----~-~~~~fD~v~~  116 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDF-----S-LGRRFSAVTC  116 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTC-----C-CSCCEEEEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHC-----C-ccCCcCEEEE
Confidence            46799999999999999999884  589999999999999988753     789999999875     1 2678999998


Q ss_pred             eC-CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .+ .-.+...  +   -....+++.+.++|||||.|++.
T Consensus       117 ~~~~l~~~~~--~---~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          117 MFSSIGHLAG--Q---AELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CTTGGGGSCH--H---HHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCchhhhcCC--H---HHHHHHHHHHHHhcCCCcEEEEE
Confidence            74 2222111  0   01147899999999999999995

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.31  E-value=5.9e-12  Score=116.37  Aligned_cols=101  Identities=16%  Similarity=0.263  Sum_probs=83.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhC-----CCcEEEEEcChhhhhhhhhccCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~-----l~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      ++.+|||||||+|.++..+++.. |..+|+|+|+|+.+++.|++++...+     ..|+.++++|+....   .  .+++
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~--~~~~  151 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY---A--EEAP  151 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC---G--GGCC
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc---c--cCCC
Confidence            46799999999999999999884 67899999999999999999988765     468999999997542   1  2567


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ||.|++..+-+              .+++.+.+.|||||++++.+.
T Consensus       152 fD~i~~~~~~~--------------~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          152 YDAIHVGAAAP--------------VVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEEEECSBBS--------------SCCHHHHHTEEEEEEEEEEES
T ss_pred             cCEEEECCchH--------------HHHHHHHHhcCCCcEEEEEEe
Confidence            99998874332              345678899999999999764

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.31  E-value=1.8e-11  Score=120.27  Aligned_cols=105  Identities=14%  Similarity=0.138  Sum_probs=84.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++.+.++ .+++|+.+|+.+-    +  +. .+|.|+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--p~-~~D~v~  240 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP----L--PA-GAGGYV  240 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C--CC-SCSEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC----C--CC-CCcEEE
Confidence            357899999999999999999999999999999 9999999999988887 5799999999632    2  23 799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+  ....    ...++|+++++.|+|||++++..
T Consensus       241 ~~~vlh~--~~~~----~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          241 LSAVLHD--WDDL----SAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             EESCGGG--SCHH----HHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             Eehhhcc--CCHH----HHHHHHHHHHHhcCCCCEEEEEe
Confidence            8632111  1111    12479999999999999998853

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.30  E-value=6.4e-12  Score=110.73  Aligned_cols=96  Identities=14%  Similarity=0.284  Sum_probs=79.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++...  +++|+|+|+.+++.|+++     .+|++++++| ..       .+++++|.|++
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~-------~~~~~~D~v~~   81 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK-----FDSVITLSDP-KE-------IPDNSVDFILF   81 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH-----CTTSEEESSG-GG-------SCTTCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CC-------CCCCceEEEEE
Confidence            467899999999999999999873  999999999999999887     4589999999 22       15789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-.+..+  .      ..+++++.+.|||||++++..
T Consensus        82 ~~~l~~~~~--~------~~~l~~~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           82 ANSFHDMDD--K------QHVISEVKRILKDDGRVIIID  112 (170)
T ss_dssp             ESCSTTCSC--H------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccchhcccC--H------HHHHHHHHHhcCCCCEEEEEE
Confidence            854443321  1      379999999999999999863

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.30  E-value=7.8e-12  Score=116.67  Aligned_cols=103  Identities=16%  Similarity=0.232  Sum_probs=84.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++..| .+++|+|+++.+++.|++++...++.|+.+.++|+...    ++ ....||.|++
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~-~~~~fD~Ii~  164 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG----FP-PKAPYDVIIV  164 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CG-GGCCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccC----CC-CCCCccEEEE
Confidence            467899999999999999999988 89999999999999999999999998999999998332    11 1235999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  352 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~  352 (420)
                      ..+-++              +.+.+.+.|+|||++++.+....
T Consensus       165 ~~~~~~--------------~~~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          165 TAGAPK--------------IPEPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             CSBBSS--------------CCHHHHHTEEEEEEEEEEECSSS
T ss_pred             CCcHHH--------------HHHHHHHhcCCCcEEEEEEecCC
Confidence            754432              22467889999999999886543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.30  E-value=8.8e-12  Score=121.96  Aligned_cols=102  Identities=17%  Similarity=0.185  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++..+ +.+|+|+|+|+.+++.|++++...+++|+.++++|+.+...     .+++||.|+
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Iv  149 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-----EFSPYDVIF  149 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-----cCCCeEEEE
Confidence            467999999999999999999977 48899999999999999999999999999999999987521     256899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      +..+-++.              .+.+.+.|||||.+++....
T Consensus       150 ~~~~~~~~--------------~~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          150 VTVGVDEV--------------PETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             ECSBBSCC--------------CHHHHHHEEEEEEEEEEBCB
T ss_pred             EcCCHHHH--------------HHHHHHhcCCCcEEEEEECC
Confidence            87544331              14678899999999998654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.29  E-value=1.9e-11  Score=122.87  Aligned_cols=121  Identities=17%  Similarity=0.238  Sum_probs=92.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|++++..++++ ++++++|+.+...     .+++||.|++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~-----~~~~fD~Ii~  304 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALT-----EEARFDIIVT  304 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSC-----TTCCEEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhccc-----cCCCeEEEEE
Confidence            4579999999999999999998  579999999999999999999888865 8999999987621     3478999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HHHHHHHHHHH
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF  361 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~~~~~~~~~l  361 (420)
                      +  .|++...+. ..-...++++++.+.|||||.+++.++. ..|...+.+.+
T Consensus       305 n--pp~~~~~~~-~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f  354 (381)
T 3dmg_A          305 N--PPFHVGGAV-ILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKF  354 (381)
T ss_dssp             C--CCCCTTCSS-CCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHH
T ss_pred             C--Cchhhcccc-cHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhh
Confidence            7  333221110 0112258999999999999999998754 33444444444

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.29  E-value=5.1e-12  Score=125.05  Aligned_cols=120  Identities=18%  Similarity=0.286  Sum_probs=91.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|.++..+++.+|+.+++|+|+|+.+++.|++++...++. ++++++|+...       .+++||.|+++
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~-------~~~~fD~Iv~~  268 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSE-------VKGRFDMIISN  268 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTT-------CCSCEEEEEEC
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEcccccc-------ccCCeeEEEEC
Confidence            56899999999999999999999999999999999999999999887764 67889998664       36789999987


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-cHHHHHHHHHHH
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQF  361 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-~~~~~~~~~~~l  361 (420)
                      .  |++...+ ...-....+++++.++|||||.+++.+. ...|...+.+.+
T Consensus       269 ~--~~~~g~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f  317 (343)
T 2pjd_A          269 P--PFHDGMQ-TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETF  317 (343)
T ss_dssp             C--CCCSSSH-HHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHH
T ss_pred             C--CcccCcc-CCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhc
Confidence            3  3321111 0111235899999999999999999753 334444444443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.29  E-value=6.6e-12  Score=126.13  Aligned_cols=105  Identities=16%  Similarity=0.158  Sum_probs=80.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHh-------HHhCC--CcEEEEEcChhhhhh-hhhcc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL-------QLSGI--TNGYFIATNATSTFR-SIVAS  299 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~-------~~~~l--~nv~~~~~Da~~~~~-~~~~~  299 (420)
                      .+.+|||||||+|.+++.+|+..+...++|||+|+.+++.|++++       ...|+  .++.|+++|+.+..- +.+  
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~--  250 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI--  250 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHH--
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccccc--
Confidence            478999999999999999999887777999999999999998764       34565  589999999988621 111  


Q ss_pred             CCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          300 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       300 ~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                        ..+|.|+++.  +++. ...      ...|.++.+.|||||+|++.
T Consensus       251 --~~aDVVf~Nn--~~F~-pdl------~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          251 --ANTSVIFVNN--FAFG-PEV------DHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             --HTCSEEEECC--TTCC-HHH------HHHHHHHHTTSCTTCEEEES
T ss_pred             --CCccEEEEcc--cccC-chH------HHHHHHHHHcCCCCcEEEEe
Confidence              3689998862  3321 111      25667889999999999863

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.29  E-value=1.4e-11  Score=119.78  Aligned_cols=116  Identities=14%  Similarity=0.107  Sum_probs=88.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-------CCCcEEEEEcChhhhh-hhhhccCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-------GITNGYFIATNATSTF-RSIVASYP  301 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-------~l~nv~~~~~Da~~~~-~~~~~~~~  301 (420)
                      ++.+|||||||+|.++..+++. +..+++|+|+|+.+++.|+++....       +..++.++++|+.+.. ...++..+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            3678999999999999999974 6789999999999999999988664       4458999999998751 01122124


Q ss_pred             CeEeEEEEeCCCCCC-CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          302 GKLILVSIQCPNPDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~-k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      ++||.|++++.-.|. ...     -....+++++.++|||||.|++.+.+.
T Consensus       113 ~~fD~V~~~~~l~~~~~~~-----~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESY-----EQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSH-----HHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CCEEEEEEecchhhccCCH-----HHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            589999998654442 110     011489999999999999999987554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.29  E-value=8.5e-13  Score=123.29  Aligned_cols=102  Identities=16%  Similarity=0.112  Sum_probs=81.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.|++++...++ .|+.|+++|+.++.      .+.+||.|+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~  149 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA------SFLKADVVF  149 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG------GGCCCSEEE
T ss_pred             CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc------ccCCCCEEE
Confidence            3688999999999999999987  48999999999999999999999998 58999999998873      357899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++.  |+.......      ..+..+.++|+|||.+++.
T Consensus       150 ~~~--~~~~~~~~~------~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          150 LSP--PWGGPDYAT------AETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             ECC--CCSSGGGGG------SSSBCTTTSCSSCHHHHHH
T ss_pred             ECC--CcCCcchhh------hHHHHHHhhcCCcceeHHH
Confidence            873  332211111      2445678889999986653

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.29  E-value=1.7e-11  Score=107.38  Aligned_cols=125  Identities=14%  Similarity=0.076  Sum_probs=90.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-----hhhhccCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-----~~~~~~~~~~  303 (420)
                      ++.+|||+|||+|.++..+++.+ |+.+++|+|+++ ++.          ..++.++++|+.+..     +..+  ++++
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~~--~~~~   88 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLERV--GDSK   88 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHHH--TTCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhccC--CCCc
Confidence            46799999999999999999994 779999999999 653          268999999998751     1113  4678


Q ss_pred             EeEEEEeCCCCCCCCcchhh---hhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          304 LILVSIQCPNPDFNRPEHRW---RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~---Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      ||.|+++.+-.+........   .-+...+++.+.++|+|||.+++.+........+.+.+.++ |..
T Consensus        89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~  155 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTK  155 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEE
T ss_pred             eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhh
Confidence            99999976555543321111   11125899999999999999999764444445566666664 443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.29  E-value=1.5e-11  Score=122.06  Aligned_cols=105  Identities=15%  Similarity=0.218  Sum_probs=83.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++. +..+|+|+|+| ++++.|++++...++.+ ++++++|+.++     +.++++||.|+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~Ii  138 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV-----ELPVEKVDIII  138 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC-----CCSSSCEEEEE
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc-----cCCCCceEEEE
Confidence            3688999999999999999987 66799999999 59999999999999876 99999999876     22468999998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      +..+.......     -..+.+++.+.++|||||.+++
T Consensus       139 s~~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          139 SEWMGYCLFYE-----SMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             ECCCBBTBTBT-----CCHHHHHHHHHHHEEEEEEEES
T ss_pred             EccccccccCc-----hhHHHHHHHHHHhCCCCCEEcc
Confidence            86432211000     0124789999999999999864

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.28  E-value=9e-12  Score=118.22  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++..|..+++|+|+|+.+++.|+++.     .++.++++|+.++     +..+++||.|+.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~-----~~~~~~fD~v~~  154 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRL-----PFSDTSMDAIIR  154 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSC-----SBCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhC-----CCCCCceeEEEE
Confidence            467999999999999999999988899999999999999998764     4689999999765     224679999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      .+. +              .+++++.++|||||.+++.+.....
T Consensus       155 ~~~-~--------------~~l~~~~~~L~pgG~l~~~~~~~~~  183 (269)
T 1p91_A          155 IYA-P--------------CKAEELARVVKPGGWVITATPGPRH  183 (269)
T ss_dssp             ESC-C--------------CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             eCC-h--------------hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence            754 1              3578899999999999998755443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.28  E-value=1.3e-11  Score=112.54  Aligned_cols=96  Identities=10%  Similarity=0.160  Sum_probs=78.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||||||+|.++..+     .. +++|+|+|+.+++.|+++.     .++.++++|+.++     +.++++||.|+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~-----~~~~~~fD~v~  100 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEAL-----PFPGESFDVVL  100 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSC-----CSCSSCEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccC-----CCCCCcEEEEE
Confidence            4679999999999999887     34 8999999999999998876     5789999999775     22567899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+..+  .      ..+++++.++|||||.+++.+
T Consensus       101 ~~~~l~~~~~--~------~~~l~~~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A          101 LFTTLEFVED--V------ERVLLEARRVLRPGGALVVGV  132 (211)
T ss_dssp             EESCTTTCSC--H------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcChhhhcCC--H------HHHHHHHHHHcCCCCEEEEEe
Confidence            8754443221  1      379999999999999999976

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.28  E-value=2.4e-11  Score=121.65  Aligned_cols=130  Identities=9%  Similarity=0.052  Sum_probs=98.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+| |+|.+++.+++..|..+++|+|+|+.+++.|++++.+.|+.|++++++|+.+.++..   .+++||.|++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~---~~~~fD~Vi~  247 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY---ALHKFDTFIT  247 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT---TSSCBSEEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh---ccCCccEEEE
Confidence            367999999 999999999999888899999999999999999999999889999999998732211   2468999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCe-EEEEEeCc----HHHHHHHHHHHH-HcCCceeEee
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDI----EEVMLRMKQQFL-EYGKGKLVLV  372 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG-~l~~~td~----~~~~~~~~~~l~-~~g~~~~~~~  372 (420)
                      +-  |+.    ...   ...+++.+.+.||||| .+++.+..    ......+.+.+. ..++....+.
T Consensus       248 ~~--p~~----~~~---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  307 (373)
T 2qm3_A          248 DP--PET----LEA---IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDII  307 (373)
T ss_dssp             CC--CSS----HHH---HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred             CC--CCc----hHH---HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence            62  331    111   2589999999999999 44555533    222245666676 7776554333

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.28  E-value=1.8e-11  Score=122.03  Aligned_cols=107  Identities=15%  Similarity=0.086  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..+|||||||+|.++..+++++|+.+++++|+ +.+++.|++++.+.++ .+++|+.+|+.+.. ..+   ++++|.|+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~---p~~~D~v~  253 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRD-VPF---PTGFDAVW  253 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSS-CCC---CCCCSEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccC-CCC---CCCcCEEE
Confidence            468999999999999999999999999999999 9999999999888776 47999999997630 001   36799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +...-..+  ...    ....+|+++++.|||||+|++.
T Consensus       254 ~~~vlh~~--~~~----~~~~~l~~~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          254 MSQFLDCF--SEE----EVISILTRVAQSIGKDSKVYIM  286 (363)
T ss_dssp             EESCSTTS--CHH----HHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EechhhhC--CHH----HHHHHHHHHHHhcCCCcEEEEE
Confidence            86422110  111    1137899999999999999885

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.27  E-value=9.4e-11  Score=118.21  Aligned_cols=129  Identities=23%  Similarity=0.244  Sum_probs=94.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||+|||+|.+++.+|+.  ...|+|+|+|+.+++.|++|+..+++.+ ++.++|+.+.++..    ++.||.|+++
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~~~----~~~fD~Ii~d  287 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLRGL----EGPFHHVLLD  287 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHHTC----CCCEEEEEEC
T ss_pred             CCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHHHh----cCCCCEEEEC
Confidence            789999999999999999997  4459999999999999999999999874 57799998875321    3349999886


Q ss_pred             CCCCCCC-Ccchhhhh--hHHHHHHHHHhhccCCeEEEEEeCc-----HHHHHHHHHHHHHcCCce
Q 014711          311 CPNPDFN-RPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       311 fpdp~~k-~~~~k~Rl--~~~~~l~~i~~~LkpgG~l~~~td~-----~~~~~~~~~~l~~~g~~~  368 (420)
                        .|.+. .+....+.  ...+++..+.+.|+|||.|++.+..     +.+.+.+.+.+...+...
T Consensus       288 --pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~  351 (393)
T 4dmg_A          288 --PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRL  351 (393)
T ss_dssp             --CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCE
T ss_pred             --CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeE
Confidence              33322 22111111  2358899999999999999976643     233344555666666543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=5.3e-12  Score=119.72  Aligned_cols=97  Identities=15%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++  |..+++|+|+|+.+++.|+++.      |+.|+++|+.++     +.++++||.|++
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~-----~~~~~~fD~v~~  100 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENL-----ALPDKSVDGVIS  100 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSC-----CSCTTCBSEEEE
T ss_pred             CCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhC-----CCCCCCEeEEEE
Confidence            468999999999999999997  6889999999999998776543      899999999875     225789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .+.-.+..+        ...+++++.++|| ||++++.+
T Consensus       101 ~~~l~~~~~--------~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          101 ILAIHHFSH--------LEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             ESCGGGCSS--------HHHHHHHHHHHBC-SSCEEEEE
T ss_pred             cchHhhccC--------HHHHHHHHHHHhC-CcEEEEEE
Confidence            754322211        1489999999999 99777654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.27  E-value=2e-11  Score=121.19  Aligned_cols=211  Identities=10%  Similarity=0.036  Sum_probs=128.1

Q ss_pred             CcccHHHHHHHhcCCCeEE--Eec---cceEEEcCCCCchHHHHHHHHHhhhcCCCC---eeEechhHHH-H-HhhcCCC
Q 014711          115 GPRSVEEITSTITKCKKVI--WVG---PVKFRFSSQYSNGASKLTGMLCKVSQGTCN---VTVIGSMACK-A-IAKVSSS  184 (420)
Q Consensus       115 Gp~T~~~~~~~~~~~~~i~--wnG---p~G~~e~~~f~~GT~~l~~~~a~~~~~~~~---~~i~gg~~~~-~-~~~~~~~  184 (420)
                      ||.|++++++.++...+.+  |..   .+|+++.+   .|+|.+.+..+.....+..   .++.+-.... . .......
T Consensus        63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~---~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (359)
T 1x19_A           63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE---DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMG  139 (359)
T ss_dssp             CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHHHHHHHHTGGG
T ss_pred             CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee---CCeEecCHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            8999999999999876653  444   45888865   2466654332222212122   2222211111 1 1111112


Q ss_pred             -cceeeeecCCCeeeeeeccccCCC---c-ccccc----CCc-c-ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCC
Q 014711          185 -IFGLNMVESGSAVWEFLKGRMLPG---V-SALDR----AFP-F-DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK  253 (420)
Q Consensus       185 -~~~~st~~GGGa~le~l~g~~lPg---v-~aL~~----~~p-~-~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P  253 (420)
                       .+.+++  |..  ++++..  .|.   . +.+..    ... . ...+.+.+.-.+..+|||||||+|.++..+++++|
T Consensus       140 L~~~l~~--g~~--~~~~~~--~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p  213 (359)
T 1x19_A          140 LSQAVRG--QKN--FKGQVP--YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP  213 (359)
T ss_dssp             HHHHHTT--SCC--CCCSSC--SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCT
T ss_pred             HHHHHhc--CCC--Cccccc--CchhhHHHHHHHHHHHHhccchhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCC
Confidence             245556  332  555432  222   1 11111    000 0 00122223222468999999999999999999999


Q ss_pred             CCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHH
Q 014711          254 DLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVE  332 (420)
Q Consensus       254 ~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~  332 (420)
                      +.+++++|+ +.+++.|++++.+.++.+ ++++++|+.+. +  +  ++  .|.|++...-....+      -....+|+
T Consensus       214 ~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~--~~--~D~v~~~~vlh~~~d------~~~~~~l~  279 (359)
T 1x19_A          214 ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--Y--PE--ADAVLFCRILYSANE------QLSTIMCK  279 (359)
T ss_dssp             TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C--C--CC--CSEEEEESCGGGSCH------HHHHHHHH
T ss_pred             CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C--C--CC--CCEEEEechhccCCH------HHHHHHHH
Confidence            999999999 999999999998888765 99999999765 1  1  22  299887632211000      01247999


Q ss_pred             HHHhhccCCeEEEEEe
Q 014711          333 AVSDLLVHDGKVFLQS  348 (420)
Q Consensus       333 ~i~~~LkpgG~l~~~t  348 (420)
                      ++.++|||||++++..
T Consensus       280 ~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          280 KAFDAMRSGGRLLILD  295 (359)
T ss_dssp             HHHTTCCTTCEEEEEE
T ss_pred             HHHHhcCCCCEEEEEe
Confidence            9999999999997753

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.27  E-value=1.5e-11  Score=116.90  Aligned_cols=108  Identities=10%  Similarity=0.073  Sum_probs=82.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChH------HHHHHHHHhHHhCC-CcEEEEEcC-hhhhhhhhhccC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGK------LVTHCRDSLQLSGI-TNGYFIATN-ATSTFRSIVASY  300 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~------~i~~A~~~~~~~~l-~nv~~~~~D-a~~~~~~~~~~~  300 (420)
                      ++.+|||||||+|.++..+++.+ |+.+++|+|+|+.      +++.|++++...++ .|++++++| ....   .++.+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~  119 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD---LGPIA  119 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC---CGGGT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc---cCCCC
Confidence            46899999999999999999996 8899999999998      99999999988777 589999998 2211   11224


Q ss_pred             CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +++||.|++..+-.+...  +      ..+++.+.++++|||++++..
T Consensus       120 ~~~fD~v~~~~~l~~~~~--~------~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFAS--A------NALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             TCCCSEEEEESCGGGSSC--H------HHHHHHHHHHTTTCSEEEEEE
T ss_pred             CCCEEEEEEccchhhCCC--H------HHHHHHHHHHhCCCCEEEEEE
Confidence            688999998743222111  1      246777777777899999863

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.26  E-value=3e-11  Score=120.60  Aligned_cols=212  Identities=14%  Similarity=0.157  Sum_probs=128.3

Q ss_pred             CcccHHHHHHHhcCCCeEE--Eec---cceEEEcCCCCchH-HHHHHHHHhhhcCCCCeeEechhHHHH---Hhh-cCCC
Q 014711          115 GPRSVEEITSTITKCKKVI--WVG---PVKFRFSSQYSNGA-SKLTGMLCKVSQGTCNVTVIGSMACKA---IAK-VSSS  184 (420)
Q Consensus       115 Gp~T~~~~~~~~~~~~~i~--wnG---p~G~~e~~~f~~GT-~~l~~~~a~~~~~~~~~~i~gg~~~~~---~~~-~~~~  184 (420)
                      ||.|++++++.++...+.+  |..   .+|+++.+.  .|+ |.+.+.-..+.. ....++.+......   ... ...-
T Consensus        70 g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~--~~~~y~~t~~s~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~l  146 (369)
T 3gwz_A           70 GPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLG--HDDLFAQNALSAVLLP-DPASPVATDARFQAAPWHWRAWEQL  146 (369)
T ss_dssp             SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECS--STTEEECCHHHHTTSC-CTTCHHHHHHHHHHSHHHHHHHHTH
T ss_pred             CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeC--CCceEecCHHHHHHhc-CCchhHHHHHHHcCCHHHHHHHHhH
Confidence            8999999999999887763  444   459888642  455 555333222221 11122222211100   001 1111


Q ss_pred             cceeeeecCCCe--------eeeeeccccCCCc-cccccCCc-----cccccccccCCCCCCEEEEEcCCccHHHHHHHH
Q 014711          185 IFGLNMVESGSA--------VWEFLKGRMLPGV-SALDRAFP-----FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMAR  250 (420)
Q Consensus       185 ~~~~st~~GGGa--------~le~l~g~~lPgv-~aL~~~~p-----~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~  250 (420)
                      .+.++|  |..+        +++++...  |.. +.+...+.     ....+.+.+.-.+..+|||||||+|.++..+++
T Consensus       147 ~~~l~~--g~~~~~~~~g~~~~~~~~~~--~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~  222 (369)
T 3gwz_A          147 THSVRT--GEASFDVANGTSFWQLTHED--PKARELFNRAMGSVSLTEAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLD  222 (369)
T ss_dssp             HHHHHH--SSCSHHHHHSSCHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHH
T ss_pred             HHHHhC--CCChhHhhcCCCHHHHHHhC--HHHHHHHHHHHHHHHhhhHHHHHHhCCCccCcEEEEeCCCccHHHHHHHH
Confidence            345556  3332        22332211  110 01100000     001122233222468999999999999999999


Q ss_pred             hCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHH
Q 014711          251 KRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRS  329 (420)
Q Consensus       251 ~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~  329 (420)
                      ++|+.+++++|+ +.+++.|++++...++ ++++|+.+|+.+.    +  +. .+|.|++...-.++  ...    ...+
T Consensus       223 ~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~--p~-~~D~v~~~~vlh~~--~d~----~~~~  288 (369)
T 3gwz_A          223 AFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET----I--PD-GADVYLIKHVLHDW--DDD----DVVR  288 (369)
T ss_dssp             HCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC----C--CS-SCSEEEEESCGGGS--CHH----HHHH
T ss_pred             HCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC----C--CC-CceEEEhhhhhccC--CHH----HHHH
Confidence            999999999999 9999999999988886 5799999999732    2  23 79999886321111  111    1137


Q ss_pred             HHHHHHhhccCCeEEEEE
Q 014711          330 LVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       330 ~l~~i~~~LkpgG~l~~~  347 (420)
                      +|+++++.|+|||++++.
T Consensus       289 ~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          289 ILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             HHHHHHTTCCTTCEEEEE
T ss_pred             HHHHHHHHcCCCCEEEEE
Confidence            999999999999999885

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.26  E-value=1.8e-11  Score=110.76  Aligned_cols=121  Identities=15%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC--CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh--------------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK--DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF--------------  293 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P--~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~--------------  293 (420)
                      ++.+|||+|||+|.++..+++++|  ..+++|+|+|+.+           ..+|+.++++|+.+..              
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccccc
Confidence            357899999999999999999988  6899999999931           2467999999997652              


Q ss_pred             -----h---hhhccCCCeEeEEEEeCCCCCCCC--cchhh-hhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHH
Q 014711          294 -----R---SIVASYPGKLILVSIQCPNPDFNR--PEHRW-RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL  362 (420)
Q Consensus       294 -----~---~~~~~~~~~~d~i~~~fpdp~~k~--~~~k~-Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~  362 (420)
                           .   ..+  ++.+||.|+++.+-+|...  .++.+ .-....+++.+.++|||||.|++.+-.......+.+.+.
T Consensus        91 ~~~~~~~~~~~~--~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~  168 (201)
T 2plw_A           91 NNSVDYKLKEIL--QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLK  168 (201)
T ss_dssp             -CHHHHHHHHHH--TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHH
T ss_pred             chhhHHHHHhhc--CCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHH
Confidence                 0   012  3578999998754444211  11111 111235889999999999999986532222334555555


Q ss_pred             H
Q 014711          363 E  363 (420)
Q Consensus       363 ~  363 (420)
                      .
T Consensus       169 ~  169 (201)
T 2plw_A          169 G  169 (201)
T ss_dssp             T
T ss_pred             H
Confidence            5

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.25  E-value=4.8e-11  Score=114.52  Aligned_cols=108  Identities=15%  Similarity=0.098  Sum_probs=82.9

Q ss_pred             CCEEEEEcCCc---cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhh--------hhhcc
Q 014711          231 QPLVVDIGSGN---GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFR--------SIVAS  299 (420)
Q Consensus       231 ~~~vLDIGcG~---G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~--------~~~~~  299 (420)
                      ...|||||||+   |.++..+++.+|+.+|+|+|+|+.|++.|++++..  ..+++|+++|+.+...        +.+  
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~--  153 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMI--  153 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHC--
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccC--
Confidence            46899999999   99887777889999999999999999999998743  3589999999976410        122  


Q ss_pred             CCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          300 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       300 ~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...++|.|++++.-.|..+..      ...+|++++++|+|||+|++..
T Consensus       154 d~~~~d~v~~~~vlh~~~d~~------~~~~l~~~~~~L~pGG~l~i~~  196 (274)
T 2qe6_A          154 DFSRPAAIMLVGMLHYLSPDV------VDRVVGAYRDALAPGSYLFMTS  196 (274)
T ss_dssp             CTTSCCEEEETTTGGGSCTTT------HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCCEEEEEechhhhCCcHH------HHHHHHHHHHhCCCCcEEEEEE
Confidence            224789998764333222111      1379999999999999999874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.24  E-value=1.1e-11  Score=114.99  Aligned_cols=102  Identities=17%  Similarity=0.302  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC------CCeEEEEeCChHHHHHHHHHhHHhC-----CCcEEEEEcChhhhhhhhhc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK------DLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P------~~~viGiDis~~~i~~A~~~~~~~~-----l~nv~~~~~Da~~~~~~~~~  298 (420)
                      ++.+|||||||+|.++..+++..+      ..+|+|+|+++.+++.|++++.+.+     ..|+.++++|+.+.++    
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----  159 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP----  159 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG----
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC----
Confidence            367999999999999999999765      3699999999999999999988776     6789999999976321    


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                       ..++||.|++..+-++              +++.+.+.|||||++++.+..
T Consensus       160 -~~~~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 -PNAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             -GGCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEESC
T ss_pred             -cCCCccEEEECCchHH--------------HHHHHHHHhcCCCEEEEEEec
Confidence             1368999988754432              336788999999999998743

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.24  E-value=1e-10  Score=112.52  Aligned_cols=133  Identities=11%  Similarity=0.052  Sum_probs=89.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeC-ChHHHHHHHHHh-----HHhCCC-----cEEEEEcChhhhhhhhhc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEV-NGKLVTHCRDSL-----QLSGIT-----NGYFIATNATSTFRSIVA  298 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDi-s~~~i~~A~~~~-----~~~~l~-----nv~~~~~Da~~~~~~~~~  298 (420)
                      .+.+|||||||+|.+++.+++.. ..+|+|+|+ |+.+++.|++++     ...++.     |+.+...|..+.......
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            36789999999999999998863 458999999 899999999999     555554     788886665432111110


Q ss_pred             c-CCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhcc---C--CeEEEEEeCcHH-----HHHHHHHHHHHcC-C
Q 014711          299 S-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV---H--DGKVFLQSDIEE-----VMLRMKQQFLEYG-K  366 (420)
Q Consensus       299 ~-~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lk---p--gG~l~~~td~~~-----~~~~~~~~l~~~g-~  366 (420)
                      . .+.+||.|++.  |..+....      ...+++.+.++|+   |  ||.+++......     ......+.+++.| |
T Consensus       158 ~~~~~~fD~Ii~~--dvl~~~~~------~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f  229 (281)
T 3bzb_A          158 CTGLQRFQVVLLA--DLLSFHQA------HDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGAL  229 (281)
T ss_dssp             HHSCSSBSEEEEE--SCCSCGGG------HHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTE
T ss_pred             hccCCCCCEEEEe--CcccChHH------HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCE
Confidence            0 25789999875  33322111      2479999999999   9  998777543321     1234666778888 7


Q ss_pred             ceeEe
Q 014711          367 GKLVL  371 (420)
Q Consensus       367 ~~~~~  371 (420)
                      ....+
T Consensus       230 ~v~~~  234 (281)
T 3bzb_A          230 IAEPW  234 (281)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76544

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.24  E-value=4.8e-11  Score=123.27  Aligned_cols=134  Identities=16%  Similarity=0.130  Sum_probs=97.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|..+..+|+..+ ...++|+|+|+.+++.+++++.+.|+.|+.++++|+..+. ..   .+++||.|+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~-~~---~~~~fD~Il  192 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG-AA---VPEMFDAIL  192 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH-HH---STTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh-hh---ccccCCEEE
Confidence            367999999999999999999864 5899999999999999999999999999999999998862 21   256899999


Q ss_pred             EeCC---------CCCCCCcchh---hh--hhHHHHHHHHHhhccCCeEEEEEeCcH---HHHHHHHHHHHHcCCc
Q 014711          309 IQCP---------NPDFNRPEHR---WR--MVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEYGKG  367 (420)
Q Consensus       309 ~~fp---------dp~~k~~~~k---~R--l~~~~~l~~i~~~LkpgG~l~~~td~~---~~~~~~~~~l~~~g~~  367 (420)
                      +.-|         +|..+.....   ..  -.+.++|+.+.+.|||||+|++.|-..   .--+.+...+++++-+
T Consensus       193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~~~  268 (479)
T 2frx_A          193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDA  268 (479)
T ss_dssp             EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHSTTT
T ss_pred             ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCCCc
Confidence            8622         1110000000   01  134689999999999999999986321   1112234455666543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.24  E-value=4.5e-11  Score=118.23  Aligned_cols=104  Identities=17%  Similarity=0.253  Sum_probs=82.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++. +..+++|+|+|+ +++.|++++..+++ .+++++++|+.++     +.+++++|.|+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~Iv  136 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV-----HLPVEKVDVII  136 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSCSCEEEEE
T ss_pred             CCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-----cCCCCcEEEEE
Confidence            4679999999999999999987 456999999997 99999999998888 6899999999875     12457899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      +... ++..  ++.  -.-+.++..+.++|||||.++
T Consensus       137 s~~~-~~~l--~~~--~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          137 SEWM-GYFL--LFE--SMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ECCC-BTTB--TTT--CHHHHHHHHHHHHEEEEEEEE
T ss_pred             EcCc-hhhc--cCH--HHHHHHHHHHHhhcCCCcEEE
Confidence            7531 1110  010  012478999999999999987

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.24  E-value=2.4e-11  Score=112.51  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=80.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++..  .+++|+|+|+.+++.|++++...+  |+.++++|+.+.++     .+++||.|++
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~-----~~~~fD~v~~  140 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE-----EEKPYDRVVV  140 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc-----cCCCccEEEE
Confidence            46799999999999999999985  799999999999999999987666  89999999977321     2568999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      ..+-++              +...+.+.|+|||++++.+..
T Consensus       141 ~~~~~~--------------~~~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          141 WATAPT--------------LLCKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             SSBBSS--------------CCHHHHHTEEEEEEEEEEECS
T ss_pred             CCcHHH--------------HHHHHHHHcCCCcEEEEEEcC
Confidence            744332              224678899999999998754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.24  E-value=4.1e-11  Score=115.22  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=94.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.+++.+|+. ...+|+++|+++.+++.+++|++.+++.| +.++++|+.++.      ..+.+|.|+
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~------~~~~~D~Vi  197 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------GENIADRIL  197 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------CCSCEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc------cccCCCEEE
Confidence            4789999999999999999987 45789999999999999999999999975 999999998762      467899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC---c---HHHHHHHHHHHHHcCCce
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD---I---EEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td---~---~~~~~~~~~~l~~~g~~~  368 (420)
                      ++.|  .  .        ..+|+..+.++|||||.+++..-   .   ....+.+.+...+.|+..
T Consensus       198 ~~~p--~--~--------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v  251 (278)
T 3k6r_A          198 MGYV--V--R--------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             ECCC--S--S--------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ECCC--C--c--------HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence            8733  1  1        12688889999999999987531   1   122344555666777654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.24  E-value=6.4e-11  Score=121.59  Aligned_cols=115  Identities=18%  Similarity=0.115  Sum_probs=90.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|..+..+|+..++ ..++|+|+|+.+++.+++++.+.|+. +.++++|+.++. ..+   +++||.|+
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-~~~---~~~FD~Il  175 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-EAF---GTYFHRVL  175 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-HHH---CSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-hhc---cccCCEEE
Confidence            4689999999999999999998764 79999999999999999999999998 999999998873 222   67899999


Q ss_pred             EeCCCC----CCCCcchhh----------hhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp----~~k~~~~k~----------Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +.-|--    +.+..+.+.          .-.+.++|+.+.+.|||||+|++.|-
T Consensus       176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            863210    001111000          11347899999999999999998763

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.23  E-value=2.5e-11  Score=123.58  Aligned_cols=108  Identities=16%  Similarity=0.082  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHH-------HHHhHHhC--CCcEEEEEcChhhhhhhhhccC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC-------RDSLQLSG--ITNGYFIATNATSTFRSIVASY  300 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A-------~~~~~~~~--l~nv~~~~~Da~~~~~~~~~~~  300 (420)
                      ++.+|||||||+|.+++.+|+.++...|+|+|+++.+++.|       ++++...|  +.|++++++|....... +...
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~-~~~~  320 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR-VAEL  320 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH-HHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc-cccc
Confidence            46899999999999999999988888999999999999999       88888888  57999999865421000 1001


Q ss_pred             CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ..+||.|+++..- +  ..+      -+..|+++.+.|||||.+++.
T Consensus       321 ~~~FDvIvvn~~l-~--~~d------~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          321 IPQCDVILVNNFL-F--DED------LNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             GGGCSEEEECCTT-C--CHH------HHHHHHHHHTTCCTTCEEEES
T ss_pred             cCCCCEEEEeCcc-c--ccc------HHHHHHHHHHhCCCCeEEEEe
Confidence            4579999986211 1  111      136789999999999999884

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.23  E-value=3.6e-11  Score=129.22  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHH------hCCCcEEEEEcChhhhhhhhhccCCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQL------SGITNGYFIATNATSTFRSIVASYPG  302 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~------~~l~nv~~~~~Da~~~~~~~~~~~~~  302 (420)
                      .+.+|||||||+|.++..|++.. |..+|+|+|+|+.+++.|++++..      .++.|++|+++|+.++     +..++
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-----p~~d~  795 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-----DSRLH  795 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-----CTTSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-----CcccC
Confidence            46899999999999999999997 568999999999999999997653      3667999999999886     22468


Q ss_pred             eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      +||.|++...-.+...      -....+++++.++|||| .+++.+.+..+
T Consensus       796 sFDlVV~~eVLeHL~d------p~l~~~L~eI~RvLKPG-~LIISTPN~ey  839 (950)
T 3htx_A          796 DVDIGTCLEVIEHMEE------DQACEFGEKVLSLFHPK-LLIVSTPNYEF  839 (950)
T ss_dssp             SCCEEEEESCGGGSCH------HHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred             CeeEEEEeCchhhCCh------HHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence            8999998743222111      01136899999999999 88887766544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.22  E-value=3.5e-11  Score=113.83  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=79.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|+++..    .+  ++++|+.++     +.++++||.|++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~-----~~~~~~fD~v~~  120 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDL-----PFPSGAFEAVLA  120 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSC-----CSCTTCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHC-----CCCCCCEEEEEE
Confidence            4678999999999999999987  5799999999999999988764    23  888998775     224788999987


Q ss_pred             eCCC-CCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          310 QCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       310 ~fpd-p~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      ...- .+..+        ...+++++.++|||||.+++.+.+.
T Consensus       121 ~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          121 LGDVLSYVEN--------KDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             CSSHHHHCSC--------HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             cchhhhcccc--------HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            5311 11111        1489999999999999999987554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.22  E-value=4.5e-11  Score=118.51  Aligned_cols=105  Identities=17%  Similarity=0.270  Sum_probs=84.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...++. +++|+++|+.+.    +   +..+|.|+
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---~~~~D~v~  254 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----L---PRKADAII  254 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----C---SSCEEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC----C---CCCccEEE
Confidence            467999999999999999999999999999999 99999999999888876 799999999753    1   23499998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.++.+      .....+++++.++|+|||++++..
T Consensus       255 ~~~vl~~~~~------~~~~~~l~~~~~~L~pgG~l~i~e  288 (360)
T 1tw3_A          255 LSFVLLNWPD------HDAVRILTRCAEALEPGGRILIHE  288 (360)
T ss_dssp             EESCGGGSCH------HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EcccccCCCH------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8632211100      011379999999999999998753

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.21  E-value=4.5e-11  Score=110.04  Aligned_cols=118  Identities=14%  Similarity=0.172  Sum_probs=88.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||||||+|.++..+++.      +|+|+|+.+++.|+++       ++.++++|+.++     +.++++||.|++.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~-----~~~~~~fD~v~~~  109 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-------GVFVLKGTAENL-----PLKDESFDFALMV  109 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-------TCEEEECBTTBC-----CSCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-------CCEEEEcccccC-----CCCCCCeeEEEEc
Confidence            578999999999999998765      9999999999999876       688999998765     2246789999987


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH-----------------------HHHHHHHHHHHcCCc
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----------------------VMLRMKQQFLEYGKG  367 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~-----------------------~~~~~~~~l~~~g~~  367 (420)
                      ..-.+..+        ...+++.+.++|+|||.+++.+....                       ..+++.+.+++.||.
T Consensus       110 ~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~  181 (219)
T 1vlm_A          110 TTICFVDD--------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFE  181 (219)
T ss_dssp             SCGGGSSC--------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCE
T ss_pred             chHhhccC--------HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCe
Confidence            43222111        13799999999999999998742110                       124567778888887


Q ss_pred             eeEeecc
Q 014711          368 KLVLVQD  374 (420)
Q Consensus       368 ~~~~~~D  374 (420)
                      .+.+..+
T Consensus       182 ~~~~~~~  188 (219)
T 1vlm_A          182 EFKVVQT  188 (219)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecc
Confidence            7655444

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.21  E-value=5.5e-11  Score=117.49  Aligned_cols=106  Identities=15%  Similarity=0.221  Sum_probs=85.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ..+|||||||+|.++..+++++|+.+++++|+ +.+++.|++++.+.++. +++++.+|+.+.. ..   .+..+|.|++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~---~~~~~D~v~~  254 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR-NF---EGGAADVVML  254 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG-GG---TTCCEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc-cc---CCCCccEEEE
Confidence            68999999999999999999999999999999 88999999999888875 5999999998752 11   2556999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ...-.++.+  .    ....+++.+++.|+|||+|++.
T Consensus       255 ~~vlh~~~~--~----~~~~~l~~~~~~L~pgG~l~i~  286 (352)
T 3mcz_A          255 NDCLHYFDA--R----EAREVIGHAAGLVKPGGALLIL  286 (352)
T ss_dssp             ESCGGGSCH--H----HHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ecccccCCH--H----HHHHHHHHHHHHcCCCCEEEEE
Confidence            632211111  0    1137999999999999999885

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.20  E-value=7.2e-12  Score=119.16  Aligned_cols=136  Identities=12%  Similarity=0.002  Sum_probs=91.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-----------------------------CC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----------------------------IT  280 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-----------------------------l~  280 (420)
                      .+.+|||||||+|.++..++... ..+|+|+|+|+.|++.|++++....                             ..
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            45789999999998877766552 2379999999999999998764421                             01


Q ss_pred             cEE-EEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe--CcH------
Q 014711          281 NGY-FIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIE------  351 (420)
Q Consensus       281 nv~-~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t--d~~------  351 (420)
                      ++. ++++|+.+..+ .-+...++||.|+.++.-.+... +..   -...++++++++|||||+|++.+  +..      
T Consensus       134 ~i~~~~~~D~~~~~~-~~~~~~~~fD~V~~~~~l~~i~~-~~~---~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~  208 (263)
T 2a14_A          134 AVKRVLKCDVHLGNP-LAPAVLPLADCVLTLLAMECACC-SLD---AYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK  208 (263)
T ss_dssp             HEEEEEECCTTSSST-TTTCCCCCEEEEEEESCHHHHCS-SHH---HHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             hhheEEeccccCCCC-CCccccCCCCEeeehHHHHHhcC-CHH---HHHHHHHHHHHHcCCCcEEEEEEeecCccceeCC
Confidence            354 89999987421 00012568999998753211000 000   11378999999999999999974  110      


Q ss_pred             -------HHHHHHHHHHHHcCCceeEe
Q 014711          352 -------EVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       352 -------~~~~~~~~~l~~~g~~~~~~  371 (420)
                             --.+++.+.+.+.||....+
T Consensus       209 ~~~~~~~~~~~~l~~~l~~aGF~i~~~  235 (263)
T 2a14_A          209 REFSCVALEKGEVEQAVLDAGFDIEQL  235 (263)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             eEeeccccCHHHHHHHHHHCCCEEEEE
Confidence                   01346788899999876543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.20  E-value=1.3e-10  Score=119.20  Aligned_cols=133  Identities=19%  Similarity=0.155  Sum_probs=97.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|..+..+++..++ .+++|+|+|+.+++.+++++.+.|++|+.++++|+.++. ..+  .+++||.|+
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~-~~~--~~~~fD~Vl  335 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP-EII--GEEVADKVL  335 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS-SSS--CSSCEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc-hhh--ccCCCCEEE
Confidence            4679999999999999999999877 899999999999999999999999999999999998762 112  347899999


Q ss_pred             EeCCCC----CCCCcchh--------hh--hhHHHHHHHHHhhccCCeEEEEEeCc---HHHHHHHHHHHHHcC
Q 014711          309 IQCPNP----DFNRPEHR--------WR--MVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  365 (420)
Q Consensus       309 ~~fpdp----~~k~~~~k--------~R--l~~~~~l~~i~~~LkpgG~l~~~td~---~~~~~~~~~~l~~~g  365 (420)
                      +.-|-.    +.+..+.+        ..  -.+..+++.+.+.|||||++++.|-.   ..-.+.+...+++++
T Consensus       336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~  409 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHP  409 (450)
T ss_dssp             EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCS
T ss_pred             EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence            863210    11111100        01  12368999999999999999987632   111223445566763

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.20  E-value=4e-11  Score=118.41  Aligned_cols=111  Identities=14%  Similarity=0.236  Sum_probs=89.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.+++. |+  ...+++|+|+|+.+++.|++|+..+++ .|++++++|+.++       . .+||.|+
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~-------~-~~fD~Vi  263 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV-------D-VKGNRVI  263 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC-------C-CCEEEEE
T ss_pred             CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh-------c-CCCcEEE
Confidence            468999999999999999 87  478999999999999999999999998 5899999999876       2 6799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  364 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~  364 (420)
                      ++.  |..          ..+++..+.+.|+|||.+++.+.... .+...+.+.+.
T Consensus       264 ~dp--P~~----------~~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~  306 (336)
T 2yx1_A          264 MNL--PKF----------AHKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKK  306 (336)
T ss_dssp             ECC--TTT----------GGGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHH
T ss_pred             ECC--cHh----------HHHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHHh
Confidence            852  221          12688999999999999988654333 45566666655

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.20  E-value=1.8e-10  Score=117.47  Aligned_cols=132  Identities=12%  Similarity=0.191  Sum_probs=97.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||+|||+|..+..+++..|+..++|+|+|+.+++.+++++.+.++ ++.++++|+.+.. ..+  .+++||.|++
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~-~~~--~~~~fD~Vl~  321 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPS-QWC--GEQQFDRILL  321 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTH-HHH--TTCCEEEEEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhch-hhc--ccCCCCEEEE
Confidence            46799999999999999999999889999999999999999999998887 5799999998763 223  3578999998


Q ss_pred             eCCCC----CCCCcchhh----------hhhHHHHHHHHHhhccCCeEEEEEeCc---HHHHHHHHHHHHHcC
Q 014711          310 QCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG  365 (420)
Q Consensus       310 ~fpdp----~~k~~~~k~----------Rl~~~~~l~~i~~~LkpgG~l~~~td~---~~~~~~~~~~l~~~g  365 (420)
                      +-|-.    +.+..+.+.          .-.+.++++.+.+.|||||++++.|-.   ....+.+...+++++
T Consensus       322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~  394 (429)
T 1sqg_A          322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA  394 (429)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCC
Confidence            73311    001111000          113468999999999999999998721   122233455666664

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.20  E-value=5.4e-11  Score=110.21  Aligned_cols=101  Identities=17%  Similarity=0.235  Sum_probs=79.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++..+  +++|+|+|+.+++.|+++.     +++.++++|+.++     + .++++|.|++
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~-----~-~~~~~D~v~~  106 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDF-----R-LGRKFSAVVS  106 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTC-----C-CSSCEEEEEE
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHc-----c-cCCCCcEEEE
Confidence            468999999999999999999975  8999999999999998874     4789999999875     1 2578999986


Q ss_pred             eCC-CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fp-dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .+. -.+...  ..   ....+++.+.++|||||.+++.+
T Consensus       107 ~~~~~~~~~~--~~---~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          107 MFSSVGYLKT--TE---ELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CTTGGGGCCS--HH---HHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCchHhhcCC--HH---HHHHHHHHHHHhcCCCeEEEEEe
Confidence            431 111111  01   11479999999999999999864

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.20  E-value=8.4e-11  Score=107.83  Aligned_cols=104  Identities=12%  Similarity=0.110  Sum_probs=80.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++..+++. + .+++|+|+|+.+++.++++.       ..++++|+.+..   .+.++++||.|++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~---~~~~~~~fD~v~~   99 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMD---MPYEEEQFDCVIF   99 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCC---CCSCTTCEEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcC---CCCCCCccCEEEE
Confidence            4689999999999999999988 4 89999999999999887654       268899987641   1224678999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      ...-.+..+  +      ..+++++.+.|+|||.+++.+.+...
T Consensus       100 ~~~l~~~~~--~------~~~l~~~~~~L~~gG~l~~~~~~~~~  135 (230)
T 3cc8_A          100 GDVLEHLFD--P------WAVIEKVKPYIKQNGVILASIPNVSH  135 (230)
T ss_dssp             ESCGGGSSC--H------HHHHHHTGGGEEEEEEEEEEEECTTS
T ss_pred             CChhhhcCC--H------HHHHHHHHHHcCCCCEEEEEeCCcch
Confidence            743222111  1      37999999999999999998754433

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.20  E-value=1.7e-10  Score=104.53  Aligned_cols=112  Identities=13%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++.     |++++++|+.++        +++||.|++
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~--------~~~~D~v~~  116 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEI--------SGKYDTWIM  116 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGC--------CCCEEEEEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHC--------CCCeeEEEE
Confidence            4678999999999999999987 55689999999999999999875     789999999875        368999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG  365 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g  365 (420)
                      +  .|++...+.    ....+++.+.+.|   |.+++.++ +....++.+.+.+.|
T Consensus       117 ~--~p~~~~~~~----~~~~~l~~~~~~~---g~~~~~~~-~~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          117 N--PPFGSVVKH----SDRAFIDKAFETS---MWIYSIGN-AKARDFLRREFSARG  162 (200)
T ss_dssp             C--CCC-----------CHHHHHHHHHHE---EEEEEEEE-GGGHHHHHHHHHHHE
T ss_pred             C--CCchhccCc----hhHHHHHHHHHhc---CcEEEEEc-CchHHHHHHHHHHCC
Confidence            7  343222111    1237888899988   44555443 333566777788777

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.19  E-value=3.1e-11  Score=113.22  Aligned_cols=115  Identities=13%  Similarity=0.100  Sum_probs=85.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh--hhhhhccCCCeE
Q 014711          231 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKL  304 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~--~~~~~~~~~~~~  304 (420)
                      +.+|||||||+|.++..||+.    .|+.+|+|+|+|+.+++.|+.    . ..|++++++|+.+.  ++ .+  .+.+|
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~-~~~v~~~~gD~~~~~~l~-~~--~~~~f  153 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D-MENITLHQGDCSDLTTFE-HL--REMAH  153 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G-CTTEEEEECCSSCSGGGG-GG--SSSCS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c-CCceEEEECcchhHHHHH-hh--ccCCC
Confidence            578999999999999999997    789999999999999988861    1 26899999999874  22 11  23479


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHh-hccCCeEEEEEeCcH----HH-HHHHHHHHHHcC
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSDIE----EV-MLRMKQQFLEYG  365 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~-~LkpgG~l~~~td~~----~~-~~~~~~~l~~~g  365 (420)
                      |.|++...   +    .    ..+.++.++.+ .|||||+|++. |..    .+ .+.+.+.+++++
T Consensus       154 D~I~~d~~---~----~----~~~~~l~~~~r~~LkpGG~lv~~-d~~~~~~~~~~~~~~~~l~~~~  208 (236)
T 2bm8_A          154 PLIFIDNA---H----A----NTFNIMKWAVDHLLEEGDYFIIE-DMIPYWYRYAPQLFSEYLGAFR  208 (236)
T ss_dssp             SEEEEESS---C----S----SHHHHHHHHHHHTCCTTCEEEEC-SCHHHHHHHCHHHHHHHHHTTT
T ss_pred             CEEEECCc---h----H----hHHHHHHHHHHhhCCCCCEEEEE-eCcccccccCHHHHHHHHHhCc
Confidence            99988643   1    1    12478999997 99999999984 221    11 124556666664

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.19  E-value=1.8e-11  Score=117.61  Aligned_cols=137  Identities=12%  Similarity=0.044  Sum_probs=89.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-----------------CC-------------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----------------GI-------------  279 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-----------------~l-------------  279 (420)
                      .+.+|||||||+|.+.. ++...+..+|+|+|+|+.|++.|++++.+.                 +.             
T Consensus        71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            46789999999999544 444445679999999999999998865421                 10             


Q ss_pred             CcEEEEEcChhhhhhh-hhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc--------
Q 014711          280 TNGYFIATNATSTFRS-IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--------  350 (420)
Q Consensus       280 ~nv~~~~~Da~~~~~~-~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~--------  350 (420)
                      ..+.++++|+.+.++- ....++++||.|++++.-.|....  ..  -...+|+++.++|||||+|++....        
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~--~~--~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~  225 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD--LA--SFQRALDHITTLLRPGGHLLLIGALEESWYLAG  225 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSS--HH--HHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCC--HH--HHHHHHHHHHHhcCCCCEEEEEEecCcceEEcC
Confidence            0267888898773220 000135679999988532221000  00  1147899999999999999985200        


Q ss_pred             -------HHHHHHHHHHHHHcCCceeEe
Q 014711          351 -------EEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       351 -------~~~~~~~~~~l~~~g~~~~~~  371 (420)
                             ..-.+++.+.+++.||..+.+
T Consensus       226 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~  253 (289)
T 2g72_A          226 EARLTVVPVSEEEVREALVRSGYKVRDL  253 (289)
T ss_dssp             TEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             CeeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence                   001456778888888876543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.19  E-value=6.2e-11  Score=113.00  Aligned_cols=105  Identities=11%  Similarity=0.122  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..||++  ..+|+|+|+|+.|++.|++++...      +++.|+.++........+++||.|++
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~fD~Vv~  116 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHFDFVLN  116 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred             CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCccEEEE
Confidence            4679999999999999999987  579999999999999999987644      22233322210000002568999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ++.-.++...      -.+.+++.+.++| |||++++...
T Consensus       117 ~~~l~~~~~~------~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          117 DRLINRFTTE------EARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             hhhhHhCCHH------HHHHHHHHHHHhC-cCcEEEEEec
Confidence            7432211111      1146889999999 9999999764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.19  E-value=3.9e-11  Score=114.52  Aligned_cols=111  Identities=8%  Similarity=-0.061  Sum_probs=89.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH----hCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~----~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||||||+|..+..+++. + .+++++|+++.+++.|++++..    ..-++++++++|+.++       . ++||
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-------~-~~fD  141 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-------I-KKYD  141 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-------C-CCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-------H-hhCC
Confidence            4578999999999999999988 7 8999999999999999887643    1235799999999775       2 6799


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH----HHHHHHHHHHHH
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLE  363 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~----~~~~~~~~~l~~  363 (420)
                      .|++..+||.             .+++.+.+.|+|||.+++.+...    .....+.+.+.+
T Consensus       142 ~Ii~d~~dp~-------------~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~  190 (262)
T 2cmg_A          142 LIFCLQEPDI-------------HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGG  190 (262)
T ss_dssp             EEEESSCCCH-------------HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHT
T ss_pred             EEEECCCChH-------------HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHH
Confidence            9999877774             58999999999999999975432    234445555554

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.18  E-value=1.4e-11  Score=116.00  Aligned_cols=137  Identities=12%  Similarity=0.011  Sum_probs=95.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-----------------------------C
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-----------------------------T  280 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-----------------------------~  280 (420)
                      .+.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++...+.                             .
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            357899999999999999998865 5899999999999999988754321                             1


Q ss_pred             cE-EEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc---------
Q 014711          281 NG-YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---------  350 (420)
Q Consensus       281 nv-~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~---------  350 (420)
                      ++ .++++|+.+... ..+...++||.|++.+.-.+... +.   -....+++++.++|||||+|++..-.         
T Consensus       135 ~v~~~~~~d~~~~~~-~~~~~~~~fD~v~~~~~l~~~~~-~~---~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~  209 (265)
T 2i62_A          135 AIKQVLKCDVTQSQP-LGGVSLPPADCLLSTLCLDAACP-DL---PAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGE  209 (265)
T ss_dssp             HEEEEEECCTTSSST-TTTCCCCCEEEEEEESCHHHHCS-SH---HHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             hheeEEEeeeccCCC-CCccccCCccEEEEhhhhhhhcC-Ch---HHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCC
Confidence            28 999999987521 00001278999988742110000 00   01247899999999999999986410         


Q ss_pred             ------HHHHHHHHHHHHHcCCceeEee
Q 014711          351 ------EEVMLRMKQQFLEYGKGKLVLV  372 (420)
Q Consensus       351 ------~~~~~~~~~~l~~~g~~~~~~~  372 (420)
                            .--.+++.+.+.+.||..+.+.
T Consensus       210 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~  237 (265)
T 2i62_A          210 QKFSSLPLGWETVRDAVEEAGYTIEQFE  237 (265)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             ccccccccCHHHHHHHHHHCCCEEEEEE
Confidence                  0013467888999998876543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.18  E-value=9.9e-11  Score=117.35  Aligned_cols=105  Identities=17%  Similarity=0.227  Sum_probs=82.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.++..++++ ...+|+|+|+| .+++.|++++..+++.+ ++++++|+.++.      .+++||.|+
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~D~Iv  134 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS------LPEKVDVII  134 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC------CSSCEEEEE
T ss_pred             CCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC------cCCcceEEE
Confidence            4689999999999999999987 33599999999 99999999999998865 999999998762      247899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +.....+ ....    -....+++.+.++|||||.|++.
T Consensus       135 ~~~~~~~-l~~e----~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          135 SEWMGYF-LLRE----SMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             ECCCBTT-BTTT----CTHHHHHHHHHHHEEEEEEEESS
T ss_pred             EcChhhc-ccch----HHHHHHHHHHHhhCCCCeEEEEe
Confidence            8431111 1100    01247899999999999999763

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.17  E-value=2.1e-10  Score=123.84  Aligned_cols=131  Identities=13%  Similarity=0.166  Sum_probs=98.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||+|||+|.+++.+|+.. ..+|+++|+|+.+++.|++|+..++++  |++++++|+.++++.    ..++||.|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~----~~~~fD~I  613 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE----ANEQFDLI  613 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH----CCCCEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh----cCCCccEE
Confidence            46899999999999999999853 347999999999999999999999987  799999999987532    35789999


Q ss_pred             EEeCCCCCCCCcch-----hhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          308 SIQCPNPDFNRPEH-----RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       308 ~~~fpdp~~k~~~~-----k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      +++  .|.+.....     ...-.+.+++..+.++|+|||.|++.+....+ ..-.+.+.+.++..
T Consensus       614 i~D--PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~-~~~~~~l~~~g~~~  676 (703)
T 3v97_A          614 FID--PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGF-RMDLDGLAKLGLKA  676 (703)
T ss_dssp             EEC--CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTC-CCCHHHHHHTTEEE
T ss_pred             EEC--CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-ccCHHHHHHcCCce
Confidence            886  233221100     01112368899999999999999998865332 22355677777653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.16  E-value=1.1e-10  Score=115.83  Aligned_cols=104  Identities=13%  Similarity=0.166  Sum_probs=81.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++ .+++++++|+.++.      .++++|.|+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------~~~~~D~Iv  121 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS------LPEQVDIII  121 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC------CSSCEEEEE
T ss_pred             CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC------CCCceeEEE
Confidence            3679999999999999999886 567999999996 88999999988888 58999999998751      246899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +..+.-+....      -..+.+..+.+.|||||.+++.
T Consensus       122 s~~~~~~~~~~------~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          122 SEPMGYMLFNE------RMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             ECCCBTTBTTT------SHHHHHHHGGGGEEEEEEEESC
T ss_pred             EeCchhcCChH------HHHHHHHHHHhhcCCCeEEEEe
Confidence            86332111110      0136777889999999999864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.16  E-value=4.7e-10  Score=114.48  Aligned_cols=125  Identities=18%  Similarity=0.196  Sum_probs=94.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||+|||+|.+++.||+.  ..+|+|+|+|+.+++.|++++..++++|++|+++|+.+.+... +..+++||.|++
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~-~~~~~~fD~Vv~  362 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ-PWAKNGFDKVLL  362 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS-GGGTTCCSEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhh-hhhcCCCCEEEE
Confidence            4578999999999999999988  6799999999999999999999999999999999998753221 113568999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +   |.....        .++++.+. .++|++.+++.++...+... ...+.+.||....
T Consensus       363 d---PPr~g~--------~~~~~~l~-~~~p~~ivyvsc~p~tlard-~~~l~~~Gy~~~~  410 (433)
T 1uwv_A          363 D---PARAGA--------AGVMQQII-KLEPIRIVYVSCNPATLARD-SEALLKAGYTIAR  410 (433)
T ss_dssp             C---CCTTCC--------HHHHHHHH-HHCCSEEEEEESCHHHHHHH-HHHHHHTTCEEEE
T ss_pred             C---CCCccH--------HHHHHHHH-hcCCCeEEEEECChHHHHhh-HHHHHHCCcEEEE
Confidence            5   321111        14555554 37999999997765555444 4566777887654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.15  E-value=2.2e-10  Score=112.71  Aligned_cols=104  Identities=14%  Similarity=0.287  Sum_probs=81.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|++++..+++. +++++++|+.++.   +  +++++|.|+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~--~~~~~D~Iv  110 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH---L--PFPKVDIII  110 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC---C--SSSCEEEEE
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc---C--CCCcccEEE
Confidence            3678999999999999998886 55699999999 6999999999988885 5999999998761   2  357899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      +..+.....   +.  -.-..++..+.++|||||.++
T Consensus       111 s~~~~~~l~---~~--~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          111 SEWMGYFLL---YE--SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ECCCBTTBS---TT--CCHHHHHHHHHHHEEEEEEEE
T ss_pred             EeCchhhcc---cH--HHHHHHHHHHHhhcCCCeEEE
Confidence            863322110   00  011478899999999999997

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.15  E-value=7.1e-11  Score=115.85  Aligned_cols=102  Identities=17%  Similarity=0.180  Sum_probs=83.2

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      .+|||||||+|.++..+++++|+.+++++|+ +.+++.|++++...++ .+++++++|+.+.    +   +..+|.|++.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---~~~~D~v~~~  240 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE----V---PSNGDIYLLS  240 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC----C---CSSCSEEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC----C---CCCCCEEEEc
Confidence            7999999999999999999999999999999 9999999999887765 4799999998752    2   3579999886


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ..-..+  ...    ....+++.+++.|+|||++++.
T Consensus       241 ~vl~~~--~~~----~~~~~l~~~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          241 RIIGDL--DEA----ASLRLLGNCREAMAGDGRVVVI  271 (334)
T ss_dssp             SCGGGC--CHH----HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hhccCC--CHH----HHHHHHHHHHHhcCCCCEEEEE
Confidence            322110  000    1137999999999999999986

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.14  E-value=2e-10  Score=104.19  Aligned_cols=128  Identities=13%  Similarity=0.088  Sum_probs=83.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-----hhhhc-cCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVA-SYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-----~~~~~-~~~~~  303 (420)
                      ++.+|||+|||+|.++..++++  ...|+|+|+++.           ....|++++++|+.+..     ...+. ...++
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~-----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~   91 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM-----------EEIAGVRFIRCDIFKETIFDDIDRALREEGIEK   91 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC-----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred             CCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc-----------ccCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence            4689999999999999999988  789999999985           23568999999997641     11120 00148


Q ss_pred             EeEEEEeCCCCCCCCc---chhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          304 LILVSIQCPNPDFNRP---EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~---~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      ||.|+++.+..+.-..   +....-+....++.+.++|||||.|++.+-...-...+...++.+ |..+.+
T Consensus        92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~  161 (191)
T 3dou_A           92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKI  161 (191)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEE
T ss_pred             ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEE
Confidence            9999886432221111   111111225788999999999999998763222234456666543 443433

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.14  E-value=2.5e-10  Score=102.70  Aligned_cols=120  Identities=13%  Similarity=0.125  Sum_probs=82.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC---------CeEEEEeCChHHHHHHHHHhHHhCCCcEEEE-EcChhhhhh-----
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD---------LNFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATSTFR-----  294 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~---------~~viGiDis~~~i~~A~~~~~~~~l~nv~~~-~~Da~~~~~-----  294 (420)
                      ++.+|||+|||+|.++..+++..+.         .+++|+|+|+.+           .+.+++++ ++|+.....     
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHHH
Confidence            3679999999999999999999765         899999999842           34678999 999876421     


Q ss_pred             hhhccCCCeEeEEEEeCCCCCCCCcchhh-----hhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHc
Q 014711          295 SIVASYPGKLILVSIQCPNPDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  364 (420)
Q Consensus       295 ~~~~~~~~~~d~i~~~fpdp~~k~~~~k~-----Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~  364 (420)
                      ..+  ++.+||.|++.++..+.  .++..     ......+++++.++|||||.|++.+-.......+.+.+...
T Consensus        91 ~~~--~~~~fD~V~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  161 (196)
T 2nyu_A           91 EVL--PGRRADVILSDMAPNAT--GFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE  161 (196)
T ss_dssp             HHS--GGGCEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred             Hhc--CCCCCcEEEeCCCCCCC--CCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH
Confidence            112  24689999986532221  11110     11124789999999999999999853322234455555543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.13  E-value=2.4e-10  Score=109.27  Aligned_cols=128  Identities=9%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             CCEEEEEcCCc--cHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhh--------hhhcc
Q 014711          231 QPLVVDIGSGN--GLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFR--------SIVAS  299 (420)
Q Consensus       231 ~~~vLDIGcG~--G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~--------~~~~~  299 (420)
                      ...+||||||.  +..+..++++ .|+.+|+++|.|+.|++.|++++...+..+++|+++|+.+...        ..++ 
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D-  157 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD-  157 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC-
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC-
Confidence            36899999997  4455666654 8999999999999999999998865444579999999988621        1111 


Q ss_pred             CCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---Cc-HHHHHHHHHHHHHcC
Q 014711          300 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DI-EEVMLRMKQQFLEYG  365 (420)
Q Consensus       300 ~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---d~-~~~~~~~~~~l~~~g  365 (420)
                      .+..+ .|+++..-.|......     -..+++++.+.|+|||+|.+.+   |. +...+.+.+.+...+
T Consensus       158 ~~~p~-av~~~avLH~l~d~~~-----p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g  221 (277)
T 3giw_A          158 LTRPV-ALTVIAIVHFVLDEDD-----AVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARN  221 (277)
T ss_dssp             TTSCC-EEEEESCGGGSCGGGC-----HHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTT
T ss_pred             cCCcc-hHHhhhhHhcCCchhh-----HHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcC
Confidence            12233 3555533333221110     0278999999999999999874   32 334455666565544

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.12  E-value=4.2e-10  Score=112.84  Aligned_cols=102  Identities=10%  Similarity=0.075  Sum_probs=87.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh---------------CCCcEEEEEcChhhhhhh
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS---------------GITNGYFIATNATSTFRS  295 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~---------------~l~nv~~~~~Da~~~~~~  295 (420)
                      +.+|||+|||+|.+++.+|++.+...|+++|+++.+++.+++|++.+               +++|++++++|+..++..
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            67899999999999999999988889999999999999999999998               888899999999987532


Q ss_pred             hhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          296 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       296 ~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                          ....||.|++   ||...         ..++++.+.+.|||||.+++.+
T Consensus       128 ----~~~~fD~I~l---DP~~~---------~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          128 ----RHRYFHFIDL---DPFGS---------PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             ----STTCEEEEEE---CCSSC---------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----ccCCCCEEEe---CCCCC---------HHHHHHHHHHhcCCCCEEEEEe
Confidence                1457999985   45311         1379999999999999998864

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.12  E-value=5.8e-10  Score=113.56  Aligned_cols=107  Identities=16%  Similarity=0.228  Sum_probs=84.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.+++.+|+.  ..+|+|+|+|+.+++.|++++..++++ ++|+++|+.+++       ..+||.|++
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~-------~~~fD~Vv~  359 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS-------VKGFDTVIV  359 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC-------CTTCSEEEE
T ss_pred             CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC-------ccCCCEEEE
Confidence            4679999999999999999987  568999999999999999999988988 999999998762       227999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHH
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM  357 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~  357 (420)
                      +   |-...       ..+.+++.+. .|+|+|.+++.++...+...+
T Consensus       360 d---PPr~g-------~~~~~~~~l~-~l~p~givyvsc~p~tlarDl  396 (425)
T 2jjq_A          360 D---PPRAG-------LHPRLVKRLN-REKPGVIVYVSCNPETFARDV  396 (425)
T ss_dssp             C---CCTTC-------SCHHHHHHHH-HHCCSEEEEEESCHHHHHHHH
T ss_pred             c---CCccc-------hHHHHHHHHH-hcCCCcEEEEECChHHHHhHH
Confidence            5   32111       1124666664 599999999988655554443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.11  E-value=4.8e-10  Score=112.01  Aligned_cols=121  Identities=15%  Similarity=0.136  Sum_probs=84.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccC----------
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY----------  300 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~----------  300 (420)
                      +..|||+|||+|.+++.+|+.  ..+|+|+|+|+.+++.|++|+..++++|++|+++|+.++++.+....          
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            467999999999999999986  46899999999999999999999999999999999998754321100          


Q ss_pred             -CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          301 -PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       301 -~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                       +.+||.|++.   |-..           .+...+.+.|+++|.++..+-++.....-...|.+ +|..
T Consensus       292 ~~~~fD~Vv~d---PPr~-----------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~-~y~~  345 (369)
T 3bt7_A          292 KSYQCETIFVD---PPRS-----------GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQ-THKV  345 (369)
T ss_dssp             GGCCEEEEEEC---CCTT-----------CCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH-HEEE
T ss_pred             ccCCCCEEEEC---cCcc-----------ccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhh-CcEE
Confidence             0379999874   3211           12234455666788777666554433333333433 3443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.10  E-value=1.2e-10  Score=111.78  Aligned_cols=108  Identities=15%  Similarity=0.224  Sum_probs=78.1

Q ss_pred             CCEEEEEcCCccH----HHHHHHHhCC----CCeEEEEeCChHHHHHHHHHhHH-----------------------hC-
Q 014711          231 QPLVVDIGSGNGL----FLLGMARKRK----DLNFLGLEVNGKLVTHCRDSLQL-----------------------SG-  278 (420)
Q Consensus       231 ~~~vLDIGcG~G~----~~~~lA~~~P----~~~viGiDis~~~i~~A~~~~~~-----------------------~~-  278 (420)
                      ..+|+|+|||+|.    +++.|++..|    +.+++|+|+|+.|++.|++++-.                       .+ 
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4689999999999    5666777655    46999999999999999987510                       01 


Q ss_pred             --C-----CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          279 --I-----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       279 --l-----~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                        +     ++|.|.+.|+.+. +  ++ ..+.||.|++...-.++..      -.+.++++.+++.|+|||+|++.+
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~-~--~~-~~~~fDlI~crnvliyf~~------~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEK-Q--YN-VPGPFDAIFCRNVMIYFDK------TTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCS-S--CC-CCCCEEEEEECSSGGGSCH------HHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             eeechhhcccCeEEecccCCC-C--CC-cCCCeeEEEECCchHhCCH------HHHHHHHHHHHHHhCCCcEEEEEe
Confidence              0     3699999999763 1  11 1468999988522122111      123589999999999999999843

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.09  E-value=3e-10  Score=112.34  Aligned_cols=129  Identities=11%  Similarity=0.119  Sum_probs=95.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCC-----CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKD-----LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~-----~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      +.+|||+|||+|.+++.+++..+.     .+++|+|+++.+++.|+.++...++ ++.++++|+....      ....||
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~------~~~~fD  203 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL------LVDPVD  203 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC------CCCCEE
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc------ccCCcc
Confidence            578999999999999999988765     7899999999999999999988887 7899999986531      356899


Q ss_pred             EEEEeCCCCCCCCcchhh----------hhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHcCC
Q 014711          306 LVSIQCPNPDFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGK  366 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~----------Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~g~  366 (420)
                      .|+.+-|-.+........          ...+..|+..+.+.|+|||++.+.+.+    ......+++.+.+.++
T Consensus       204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~  278 (344)
T 2f8l_A          204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH  278 (344)
T ss_dssp             EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred             EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence            999984311111100000          012236899999999999999998721    1224567777777665

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.09  E-value=3.5e-10  Score=107.59  Aligned_cols=131  Identities=15%  Similarity=0.098  Sum_probs=93.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-------CCC-----CeEEEEeCCh---HHHH-----------HHHHHhHH-------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-------RKD-----LNFLGLEVNG---KLVT-----------HCRDSLQL-------  276 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-------~P~-----~~viGiDis~---~~i~-----------~A~~~~~~-------  276 (420)
                      +..+|||||||+|..++.+++.       .|+     .+|+++|..+   +.+.           .|++.+..       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3578999999999999887664       674     5899999887   4444           44555443       


Q ss_pred             -------hCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          277 -------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       277 -------~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                             .+..|++++.+|+.+.++..-......||.|++   |+|.+++++  ++.++++++.+++.|+|||+|...|-
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~ifl---D~fsp~~~p--~lw~~~~l~~l~~~L~pGG~l~tysa  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFL---DGFAPAKNP--DMWTQNLFNAMARLARPGGTLATFTS  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEE---CSSCTTTCG--GGCCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEE---CCCCcccCh--hhcCHHHHHHHHHHcCCCcEEEEEeC
Confidence                   123579999999999765421000137999966   787666655  56678999999999999999986553


Q ss_pred             cHHHHHHHHHHHHHcCCcee
Q 014711          350 IEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       350 ~~~~~~~~~~~l~~~g~~~~  369 (420)
                      ..    .+++.+.+.||...
T Consensus       215 a~----~vrr~L~~aGF~v~  230 (257)
T 2qy6_A          215 AG----FVRRGLQEAGFTMQ  230 (257)
T ss_dssp             BH----HHHHHHHHHTEEEE
T ss_pred             CH----HHHHHHHHCCCEEE
Confidence            32    46777888888754

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.08  E-value=1.2e-10  Score=120.50  Aligned_cols=104  Identities=13%  Similarity=0.155  Sum_probs=80.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.+++.+|+ .+..+|+|+|+|+ +++.|++++..+++ .+++++++|+.++ +     .+++||.|+
T Consensus       158 ~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~-----~~~~fD~Iv  229 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-S-----LPEQVDIII  229 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-C-----CSSCEEEEE
T ss_pred             CCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-c-----cCCCeEEEE
Confidence            367999999999999999887 5778999999998 99999999999888 5799999999875 1     246899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++.+.-     |.... -..+.+..+.+.|||||.+++.
T Consensus       230 s~~~~~-----~~~~e-~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          230 SEPMGY-----MLFNE-RMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             CCCCHH-----HHTCH-HHHHHHHHGGGGEEEEEEEESC
T ss_pred             EeCchH-----hcCcH-HHHHHHHHHHHhcCCCCEEEEE
Confidence            753210     00000 0125667889999999999853

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.07  E-value=2.5e-10  Score=115.27  Aligned_cols=120  Identities=16%  Similarity=0.109  Sum_probs=91.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|.+++.+++++ +..+++|+|+++.+++.|         .++.++++|+.+..      .++.||.|+
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~------~~~~fD~Ii  103 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE------PGEAFDLIL  103 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC------CSSCEEEEE
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcC------ccCCCCEEE
Confidence            35699999999999999999886 678999999999998766         47999999998752      356899999


Q ss_pred             EeCCCCCCCCcc---------hh-hhh-------------hHHHHHHHHHhhccCCeEEEEEeCcH----HHHHHHHHHH
Q 014711          309 IQCPNPDFNRPE---------HR-WRM-------------VQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQF  361 (420)
Q Consensus       309 ~~fpdp~~k~~~---------~k-~Rl-------------~~~~~l~~i~~~LkpgG~l~~~td~~----~~~~~~~~~l  361 (420)
                      .+  .|+.....         .. +..             ....|++.+.+.|+|||++.+.+...    .+.+.+++.+
T Consensus       104 ~N--PPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l  181 (421)
T 2ih2_A          104 GN--PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFL  181 (421)
T ss_dssp             EC--CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHH
T ss_pred             EC--cCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHH
Confidence            98  56643322         11 111             12378999999999999999987442    2356678877


Q ss_pred             HHcCC
Q 014711          362 LEYGK  366 (420)
Q Consensus       362 ~~~g~  366 (420)
                      .+.++
T Consensus       182 ~~~~~  186 (421)
T 2ih2_A          182 AREGK  186 (421)
T ss_dssp             HHHSE
T ss_pred             HhcCC
Confidence            77665

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.06  E-value=6.4e-10  Score=110.45  Aligned_cols=103  Identities=12%  Similarity=0.076  Sum_probs=80.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+|||||||+|.++..+++++|+.+++..|. +.+++.|++++...+.+||+|+.+|..+.       +....|.+++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~-------~~~~~D~~~~  250 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD-------PLPEADLYIL  250 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS-------CCCCCSEEEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC-------CCCCceEEEe
Confidence            357899999999999999999999999999997 88999999988776778999999998653       2334688877


Q ss_pred             eCCC-CCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpd-p~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ...- -|+   ..    ....+|+++++.|+|||++++.
T Consensus       251 ~~vlh~~~---d~----~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          251 ARVLHDWA---DG----KCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             ESSGGGSC---HH----HHHHHHHHHHHHCCTTCEEEEE
T ss_pred             eeecccCC---HH----HHHHHHHHHHhhCCCCCEEEEE
Confidence            5211 111   11    1137899999999999999885

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.05  E-value=2.3e-10  Score=115.68  Aligned_cols=123  Identities=19%  Similarity=0.280  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEE--EEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY--FIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~--~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||||||+|.++..+++.  ..+++|+|+|+.+++.|+++    ++.+..  |...++..+     +..+++||.|
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l-----~~~~~~fD~I  175 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDV-----RRTEGPANVI  175 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHH-----HHHHCCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhc-----ccCCCCEEEE
Confidence            4679999999999999999987  56999999999999998775    433321  223333332     1136899999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH-------------------HHHHHHHHHHcCCce
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-------------------MLRMKQQFLEYGKGK  368 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~-------------------~~~~~~~l~~~g~~~  368 (420)
                      +++..-.+..+        ...++++++++|||||++++.+.+...                   .+++.+.+++.||..
T Consensus       176 ~~~~vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~  247 (416)
T 4e2x_A          176 YAANTLCHIPY--------VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFEL  247 (416)
T ss_dssp             EEESCGGGCTT--------HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEE
T ss_pred             EECChHHhcCC--------HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEE
Confidence            98743222211        138999999999999999997532110                   235777788888776


Q ss_pred             eEe
Q 014711          369 LVL  371 (420)
Q Consensus       369 ~~~  371 (420)
                      ..+
T Consensus       248 ~~~  250 (416)
T 4e2x_A          248 VDV  250 (416)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.04  E-value=4.7e-10  Score=108.21  Aligned_cols=77  Identities=14%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||||||+|.++..|++.  ..+++|+|+|+.+++.+++++...+. .|++++++|+.+.       .-.++|.|+
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~-------~~~~fD~vv   98 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-------DLPFFDTCV   98 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-------CCCCCSEEE
T ss_pred             CCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc-------cchhhcEEE
Confidence            4678999999999999999998  45899999999999999999876665 6899999999875       123789999


Q ss_pred             EeCCCCC
Q 014711          309 IQCPNPD  315 (420)
Q Consensus       309 ~~fpdp~  315 (420)
                      .+.|-.|
T Consensus        99 ~nlpy~~  105 (285)
T 1zq9_A           99 ANLPYQI  105 (285)
T ss_dssp             EECCGGG
T ss_pred             EecCccc
Confidence            9865443

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.02  E-value=1.5e-09  Score=109.20  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=86.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC--------------------------------------CCeEEEEeCChHHHHHHH
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK--------------------------------------DLNFLGLEVNGKLVTHCR  271 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P--------------------------------------~~~viGiDis~~~i~~A~  271 (420)
                      .+..+||.+||+|.+++++|....                                      ..+++|+|+++.+++.|+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            357899999999999999987632                                      267999999999999999


Q ss_pred             HHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccC--CeEEEEEe
Q 014711          272 DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH--DGKVFLQS  348 (420)
Q Consensus       272 ~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkp--gG~l~~~t  348 (420)
                      +|+..+++. +++|.++|+.++.      .+.++|.|+++  .|+.........+  ..+.+.+.+.||+  |+.+++-|
T Consensus       275 ~Na~~~gl~~~i~~~~~D~~~l~------~~~~~D~Iv~N--PPyg~rl~~~~~l--~~ly~~lg~~lk~~~g~~~~iit  344 (385)
T 3ldu_A          275 ENAEIAGVDEYIEFNVGDATQFK------SEDEFGFIITN--PPYGERLEDKDSV--KQLYKELGYAFRKLKNWSYYLIT  344 (385)
T ss_dssp             HHHHHHTCGGGEEEEECCGGGCC------CSCBSCEEEEC--CCCCCSHHHHHHH--HHHHHHHHHHHHTSBSCEEEEEE
T ss_pred             HHHHHcCCCCceEEEECChhhcC------cCCCCcEEEEC--CCCcCccCCHHHH--HHHHHHHHHHHhhCCCCEEEEEE
Confidence            999999986 7999999998862      24689999887  5553221111111  2455666666766  88888888


Q ss_pred             CcHHHH
Q 014711          349 DIEEVM  354 (420)
Q Consensus       349 d~~~~~  354 (420)
                      .+..+.
T Consensus       345 ~~~~l~  350 (385)
T 3ldu_A          345 SYEDFE  350 (385)
T ss_dssp             SCTTHH
T ss_pred             CCHHHH
Confidence            766643

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.00  E-value=2.6e-09  Score=107.33  Aligned_cols=114  Identities=14%  Similarity=0.144  Sum_probs=85.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCC--------------------------------------CeEEEEeCChHHHHHHHH
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKD--------------------------------------LNFLGLEVNGKLVTHCRD  272 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~--------------------------------------~~viGiDis~~~i~~A~~  272 (420)
                      +..+||.+||+|.++++.|....+                                      .+++|+|+++.+++.|++
T Consensus       195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~  274 (384)
T 3ldg_A          195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK  274 (384)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence            567999999999999998876433                                      569999999999999999


Q ss_pred             HhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccC--CeEEEEEeC
Q 014711          273 SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH--DGKVFLQSD  349 (420)
Q Consensus       273 ~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkp--gG~l~~~td  349 (420)
                      |+...|+.+ ++|.++|+.++.      .+.++|.|+++  .|+-..-..+..+  ..+.+.+.+.||+  ||.+++-|.
T Consensus       275 Na~~~gl~~~I~~~~~D~~~l~------~~~~fD~Iv~N--PPYG~rl~~~~~l--~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          275 NAREVGLEDVVKLKQMRLQDFK------TNKINGVLISN--PPYGERLLDDKAV--DILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHTTCTTTEEEEECCGGGCC------CCCCSCEEEEC--CCCTTTTSCHHHH--HHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHcCCCCceEEEECChHHCC------ccCCcCEEEEC--CchhhccCCHHHH--HHHHHHHHHHHhhCCCcEEEEEEC
Confidence            999999875 999999998862      24589999887  5553221111111  2455556666665  999998887


Q ss_pred             cHHHH
Q 014711          350 IEEVM  354 (420)
Q Consensus       350 ~~~~~  354 (420)
                      +..+.
T Consensus       345 ~~~l~  349 (384)
T 3ldg_A          345 DTDFE  349 (384)
T ss_dssp             CTTHH
T ss_pred             CHHHH
Confidence            66643

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.00  E-value=5.3e-10  Score=102.21  Aligned_cols=107  Identities=9%  Similarity=0.065  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.++..++     .+++|+|+|+.               ++.++++|+.++     +.++++||.|++
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------------~~~~~~~d~~~~-----~~~~~~fD~v~~  121 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------------DPRVTVCDMAQV-----PLEDESVDVAVF  121 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------------STTEEESCTTSC-----SCCTTCEEEEEE
T ss_pred             CCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------------CceEEEeccccC-----CCCCCCEeEEEE
Confidence            35789999999999998874     68999999987               567889998774     224678999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH--HHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--VMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~--~~~~~~~~l~~~g~~~~~  370 (420)
                      .+.-.+   .+      ...+++++.++|+|||.+++..-...  ..+++.+.+++.||....
T Consensus       122 ~~~l~~---~~------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~  175 (215)
T 2zfu_A          122 CLSLMG---TN------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVS  175 (215)
T ss_dssp             ESCCCS---SC------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEE
T ss_pred             ehhccc---cC------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEE
Confidence            743321   11      14899999999999999998643221  245678889999987654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.00  E-value=1.9e-09  Score=108.67  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=84.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCC--------------------------------------CeEEEEeCChHHHHHHHH
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKD--------------------------------------LNFLGLEVNGKLVTHCRD  272 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~--------------------------------------~~viGiDis~~~i~~A~~  272 (420)
                      +..+||.+||+|.+++++|....+                                      ..++|+|+++.+++.|++
T Consensus       202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~  281 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ  281 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence            567999999999999998876433                                      569999999999999999


Q ss_pred             HhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccC--CeEEEEEeC
Q 014711          273 SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH--DGKVFLQSD  349 (420)
Q Consensus       273 ~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkp--gG~l~~~td  349 (420)
                      |+...|+.+ ++|.++|+.++.      .+.++|.|+++  .|+......+..+  ..+.+.+.+.||+  ||.+++-|.
T Consensus       282 Na~~~gl~~~I~~~~~D~~~~~------~~~~fD~Iv~N--PPYg~rl~~~~~l--~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          282 NAVEAGLGDLITFRQLQVADFQ------TEDEYGVVVAN--PPYGERLEDEEAV--RQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHTTCTTCSEEEECCGGGCC------CCCCSCEEEEC--CCCCCSHHHHHHH--HHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHcCCCCceEEEECChHhCC------CCCCCCEEEEC--CCCccccCCchhH--HHHHHHHHHHHhcCCCCEEEEEEC
Confidence            999999874 999999998862      24589999887  4542221111111  2345555556655  999988887


Q ss_pred             cHHHH
Q 014711          350 IEEVM  354 (420)
Q Consensus       350 ~~~~~  354 (420)
                      +..+.
T Consensus       352 ~~~l~  356 (393)
T 3k0b_A          352 YELFE  356 (393)
T ss_dssp             CTTHH
T ss_pred             CHHHH
Confidence            66653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.99  E-value=5.3e-10  Score=112.05  Aligned_cols=100  Identities=18%  Similarity=0.065  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCC------ccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-hhhhccCC
Q 014711          230 AQPLVVDIGSG------NGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-RSIVASYP  301 (420)
Q Consensus       230 ~~~~vLDIGcG------~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-~~~~~~~~  301 (420)
                      .+.+|||||||      +|..++.++++ +|+.+++|+|+|+.|.         ...+|++|+++|+.++. ...+...+
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d  286 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY  286 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence            35789999999      77788888876 6999999999999972         13468999999998751 10111014


Q ss_pred             CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++||.|+.... .+     ..   ....+|++++++|||||+|++.
T Consensus       287 ~sFDlVisdgs-H~-----~~---d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          287 GPFDIVIDDGS-HI-----NA---HVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             CCEEEEEECSC-CC-----HH---HHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCccEEEECCc-cc-----ch---hHHHHHHHHHHhcCCCeEEEEE
Confidence            78999987521 11     11   1247899999999999999985

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.99  E-value=4.2e-09  Score=102.74  Aligned_cols=117  Identities=9%  Similarity=0.024  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||+|||+|..+..+|+.. +...|+++|+++.+++.+++++.+.|+.|+.++++|+.++... .+ ...+||.|+
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~-~~-~~~~fD~Vl  179 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS-DP-RYHEVHYIL  179 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT-CG-GGTTEEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc-cc-ccCCCCEEE
Confidence            46799999999999999999874 5689999999999999999999999999999999999876211 00 014699998


Q ss_pred             EeCC-----------CC-CCCCcchh--h--hhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCP-----------NP-DFNRPEHR--W--RMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fp-----------dp-~~k~~~~k--~--Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +.-|           |. |.+...+.  .  .-++.++|+.+.+.|+ ||+++..|-
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC  235 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC  235 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence            7522           21 10000000  0  1234678888888887 999988763

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.99  E-value=1.6e-09  Score=108.47  Aligned_cols=103  Identities=15%  Similarity=0.263  Sum_probs=78.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +.+|||||||+|.+++..|+. -..+|+|+|.|+ +++.|++++..+++.+ ++++++|+.++.      .++.+|.|+.
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~------lpe~~Dvivs  155 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE------LPEQVDAIVS  155 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC------CSSCEEEEEC
T ss_pred             CCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec------CCccccEEEe
Confidence            679999999999988776765 346899999996 8899999999999875 999999998862      3578999976


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      ...+-...   +. . +-+.++....++|||||.++-
T Consensus       156 E~~~~~l~---~e-~-~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          156 EWMGYGLL---HE-S-MLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CCCBTTBT---TT-C-SHHHHHHHHHHHEEEEEEEES
T ss_pred             eccccccc---cc-c-hhhhHHHHHHhhCCCCceECC
Confidence            43222100   00 0 125788888999999998764

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.99  E-value=2e-09  Score=108.30  Aligned_cols=122  Identities=14%  Similarity=0.116  Sum_probs=94.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCc--EEEEEcChhhhhh-hhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFR-SIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~n--v~~~~~Da~~~~~-~~~~~~~~~~d  305 (420)
                      ++.+|||++||+|.+++.+|++.++ ..|+++|+++.+++.+++|++.+++.|  ++++++|+.+++. .    ....||
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~----~~~~fD  127 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE----WGFGFD  127 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC----CSSCEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh----hCCCCc
Confidence            3678999999999999999997654 689999999999999999999999987  9999999998753 3    245799


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHH--HHHHHHHHHcCCc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM--LRMKQQFLEYGKG  367 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~--~~~~~~l~~~g~~  367 (420)
                      .|++   ||. ..        ...+++.+.+.|+|||.+++.+....-.  .+....++.+|..
T Consensus       128 ~V~l---DP~-g~--------~~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rkYg~~  179 (392)
T 3axs_A          128 YVDL---DPF-GT--------PVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMAR  179 (392)
T ss_dssp             EEEE---CCS-SC--------CHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSB
T ss_pred             EEEE---CCC-cC--------HHHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHHhCCc
Confidence            9977   552 11        1268999999999999999876332211  0234455555543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.99  E-value=5.4e-10  Score=111.55  Aligned_cols=97  Identities=16%  Similarity=0.229  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      ..+++|+++|+.+-    +  ++.  |.|++
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~--p~~--D~v~~  267 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFDG----V--PKG--DAIFI  267 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC----C--CCC--SEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCCC----C--CCC--CEEEE
Confidence            468999999999999999999999999999999 888876643      25899999999752    2  233  88887


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .+.-.+  ....    ....+|++++++|||||+|++.
T Consensus       268 ~~vlh~--~~~~----~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          268 KWICHD--WSDE----HCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             ESCGGG--BCHH----HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             echhhc--CCHH----HHHHHHHHHHHHcCCCCEEEEE
Confidence            632211  0000    1137899999999999999885

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.97  E-value=5e-10  Score=110.73  Aligned_cols=102  Identities=19%  Similarity=0.281  Sum_probs=75.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..+|||||||+|.++..+++++|+.+++++|++ .++.  ++++...+. .+++|+++|+.+.    +   + ++|.|+
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~~----~---p-~~D~v~  252 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLRE----V---P-HADVHV  252 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTTC----C---C-CCSEEE
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCCC----C---C-CCcEEE
Confidence            4679999999999999999999999999999994 4444  333333343 4699999999632    1   3 899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.++  ...    ....+|++++++|||||+|++..
T Consensus       253 ~~~vlh~~--~d~----~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          253 LKRILHNW--GDE----DSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             EESCGGGS--CHH----HHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             EehhccCC--CHH----HHHHHHHHHHHhcCCCCEEEEEE
Confidence            86322111  100    11379999999999999998853

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.97  E-value=2.5e-10  Score=109.79  Aligned_cols=106  Identities=15%  Similarity=0.076  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhH-HhCCC-cEEEE--EcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ-LSGIT-NGYFI--ATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~-~~~l~-nv~~~--~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||+|||+|.++..++++   .+|+|+|+|+ ++..++++.. ..... |+.|+  ++|+.++       ++++||
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-------~~~~fD  150 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-------EPFQAD  150 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-------CCCCCS
T ss_pred             CCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-------CCCCcC
Confidence            4678999999999999999987   6899999999 5433322110 00111 78999  9999875       367899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCe--EEEEEe
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG--KVFLQS  348 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG--~l~~~t  348 (420)
                      .|++.+. .+.... .....-...+|+.+.++|||||  .|++.+
T Consensus       151 ~Vvsd~~-~~~~~~-~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          151 TVLCDIG-ESNPTA-AVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             EEEECCC-CCCSCH-HHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             EEEECCC-cCCCch-hhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            9998765 221111 0000001137899999999999  998865

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.96  E-value=4.1e-10  Score=107.59  Aligned_cols=105  Identities=11%  Similarity=0.092  Sum_probs=72.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH-hCC-CcEEEE--EcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-SGI-TNGYFI--ATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~-~~l-~nv~~~--~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||+|||+|.++..+++.   .+|+|+|+++ ++..++++... ... .|+.|+  ++|+.++       ++.+||
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-------~~~~fD  142 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-------PVERTD  142 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-------CCCCCS
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-------CCCCCc
Confidence            3678999999999999999987   6899999999 53322211000 001 178999  9999875       367899


Q ss_pred             EEEEeCCCCCCCCcchhhhhh-HHHHHHHHHhhccCCe--EEEEEe
Q 014711          306 LVSIQCPNPDFNRPEHRWRMV-QRSLVEAVSDLLVHDG--KVFLQS  348 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~-~~~~l~~i~~~LkpgG--~l~~~t  348 (420)
                      .|++.+. ...  .++..... ...+|+.+.++|||||  .|++.+
T Consensus       143 ~V~sd~~-~~~--~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          143 VIMCDVG-ESS--PKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             EEEECCC-CCC--SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEEeCc-ccC--CccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            9998765 221  11110000 1137899999999999  999876

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.96  E-value=1e-09  Score=106.14  Aligned_cols=120  Identities=9%  Similarity=0.064  Sum_probs=82.1

Q ss_pred             CCCEEEEEcCCc------cHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEE-EEcChhhhhhhhhccCC
Q 014711          230 AQPLVVDIGSGN------GLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYP  301 (420)
Q Consensus       230 ~~~~vLDIGcG~------G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~-~~~Da~~~~~~~~~~~~  301 (420)
                      ++.+|||+|||+      |.  ..+++..| +..|+|+|+|+.             ++|++| +++|+.++.      .+
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~------~~  121 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVH------TA  121 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCC------CS
T ss_pred             CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCC------cc
Confidence            467999999955      66  55676766 689999999998             247889 999998751      24


Q ss_pred             CeEeEEEEeCCCCCCCC--c-chhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          302 GKLILVSIQCPNPDFNR--P-EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~k~--~-~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ++||.|+++.+.++...  . +.....+.+++++.+.++|||||.|++..-......++.+.++++||..+.
T Consensus       122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~  193 (290)
T 2xyq_A          122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAF  193 (290)
T ss_dssp             SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEE
T ss_pred             CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEE
Confidence            68999998755443211  1 111111235789999999999999999652222234577778887765443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.95  E-value=1.1e-09  Score=109.20  Aligned_cols=97  Identities=13%  Similarity=0.216  Sum_probs=76.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      .++++++++|+.+-    +   +. +|.|++
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~---~~-~D~v~~  273 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFAS----V---PQ-GDAMIL  273 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC----C---CC-EEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCcccC----C---CC-CCEEEE
Confidence            467999999999999999999999999999999 999877653      35799999999752    2   22 899988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ...-.+.  ...    ....+|++++++|||||+|++.
T Consensus       274 ~~~lh~~--~d~----~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          274 KAVCHNW--SDE----KCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             ESSGGGS--CHH----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ecccccC--CHH----HHHHHHHHHHHhcCCCCEEEEE
Confidence            7432111  111    1137999999999999999886

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.95  E-value=1.1e-09  Score=102.59  Aligned_cols=120  Identities=14%  Similarity=0.060  Sum_probs=75.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEE-EcChhhhhhhhhcc---CCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVAS---YPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~-~~Da~~~~~~~~~~---~~~~~d  305 (420)
                      .+.+|||||||+|.++..|++. ...+|+|+|+|+.|++.|+++..+     +... ..++.......++.   ...++|
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~D  110 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDER-----VVVMEQFNFRNAVLADFEQGRPSFTSID  110 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTT-----EEEECSCCGGGCCGGGCCSCCCSEEEEC
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCcc-----ccccccceEEEeCHhHcCcCCCCEEEEE
Confidence            4679999999999999999988 335999999999999988775432     2211 12222221111110   112333


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC------c-----------H----HHHHHHHHHHHHc
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD------I-----------E----EVMLRMKQQFLEY  364 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td------~-----------~----~~~~~~~~~l~~~  364 (420)
                      .++++.                ..+++++.++|||||+|++.+.      +           +    ...+++.+.+++.
T Consensus       111 ~v~~~l----------------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~a  174 (232)
T 3opn_A          111 VSFISL----------------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQL  174 (232)
T ss_dssp             CSSSCG----------------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEhhhH----------------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHC
Confidence            332221                2689999999999999998631      0           0    1123466677788


Q ss_pred             CCceeEe
Q 014711          365 GKGKLVL  371 (420)
Q Consensus       365 g~~~~~~  371 (420)
                      ||....+
T Consensus       175 Gf~v~~~  181 (232)
T 3opn_A          175 GFSVKGL  181 (232)
T ss_dssp             TEEEEEE
T ss_pred             CCEEEEE
Confidence            8876544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.94  E-value=4.8e-09  Score=99.12  Aligned_cols=124  Identities=10%  Similarity=-0.001  Sum_probs=93.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ....|||||||.|-+++.++...|..+|+++|+++.+++.+++++..+|+. .++.+.|...-.      +++.+|.+.+
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~------p~~~~DvaL~  204 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDR------LDEPADVTLL  204 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSC------CCSCCSEEEE
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccC------CCCCcchHHH
Confidence            357899999999999999999999999999999999999999999988876 788888887542      4788999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-----------HHHHHHHHHHHHHcCCce
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----------EEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-----------~~~~~~~~~~l~~~g~~~  368 (420)
                      +-.-|      +-.+--+...+ .+.+.|+|+|.|+-. +.           +.|.+++.+.+.+.||..
T Consensus       205 lkti~------~Le~q~kg~g~-~ll~aL~~~~vvVSf-p~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~  266 (281)
T 3lcv_B          205 LKTLP------CLETQQRGSGW-EVIDIVNSPNIVVTF-PTKSLGQRSKGMFQNYSQSFESQARERSCRI  266 (281)
T ss_dssp             TTCHH------HHHHHSTTHHH-HHHHHSSCSEEEEEE-ECC-------CHHHHHHHHHHHHHHHHTCCE
T ss_pred             HHHHH------HhhhhhhHHHH-HHHHHhCCCCEEEec-cchhhcCCCcchhhHHHHHHHHHHHhcCCce
Confidence            62222      11111112344 789999999988642 22           455556666666777744

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.94  E-value=1.2e-09  Score=109.00  Aligned_cols=97  Identities=16%  Similarity=0.235  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      ..+++|+.+|+.+-    +  +.+  |.|++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~----~--p~~--D~v~~  265 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFKE----V--PSG--DTILM  265 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC----C--CCC--SEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCCC----C--CCC--CEEEe
Confidence            468999999999999999999999999999999 888876643      36899999999752    2  233  98887


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ...-..  ....    ....+|++++++|||||+|++.
T Consensus       266 ~~vlh~--~~d~----~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          266 KWILHD--WSDQ----HCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             ESCGGG--SCHH----HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hHHhcc--CCHH----HHHHHHHHHHHHcCCCCEEEEE
Confidence            632110  0000    1137899999999999999885

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.92  E-value=1.4e-09  Score=106.00  Aligned_cols=104  Identities=12%  Similarity=0.058  Sum_probs=71.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeC----ChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEV----NGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDi----s~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~  304 (420)
                      ++.+|||+|||+|.++..+|++   ..|+|+|+    ++.++..+  .....+.+++.|+++ |+..+       ++.+|
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l-------~~~~f  149 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFI-------PPERC  149 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTS-------CCCCC
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccC-------CcCCC
Confidence            3679999999999999999987   58999999    55443211  111223467999999 88765       35689


Q ss_pred             eEEEEeCCCCCCCCcchhh-hhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          305 ILVSIQCPNPDFNRPEHRW-RMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~-Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      |.|++.++..   ..++.. ......+|..+.++|||||.|++.+
T Consensus       150 D~V~sd~~~~---~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          150 DTLLCDIGES---SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             SEEEECCCCC---CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CEEEECCccc---cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            9998865321   111110 0000147888999999999999875

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.92  E-value=1.6e-09  Score=107.16  Aligned_cols=97  Identities=13%  Similarity=0.221  Sum_probs=75.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      .++++|+++|+.+-    +   + .+|.|++
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~---p-~~D~v~~  252 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFTS----I---P-NADAVLL  252 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTTC----C---C-CCSEEEE
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccCC----C---C-CccEEEe
Confidence            357999999999999999999999999999999 999887754      35699999999652    2   2 3899988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccC---CeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH---DGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkp---gG~l~~~  347 (420)
                      ...-...  ...    ....+|++++++|||   ||++++.
T Consensus       253 ~~~lh~~--~d~----~~~~~l~~~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          253 KYILHNW--TDK----DCLRILKKCKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             ESCGGGS--CHH----HHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             ehhhccC--CHH----HHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            6422111  111    113799999999999   9999885

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.90  E-value=3e-09  Score=103.23  Aligned_cols=75  Identities=15%  Similarity=0.294  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||||||+|.++..|++.  ..+++|+|+++.+++.|++++...+..|++++++|+..+       +..++|.|++
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~-------~~~~~D~Vv~  112 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT-------VFPKFDVCTA  112 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS-------CCCCCSEEEE
T ss_pred             CcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC-------CcccCCEEEE
Confidence            4678999999999999999987  569999999999999999999878888999999999875       2347999999


Q ss_pred             eCCC
Q 014711          310 QCPN  313 (420)
Q Consensus       310 ~fpd  313 (420)
                      +.|-
T Consensus       113 n~py  116 (299)
T 2h1r_A          113 NIPY  116 (299)
T ss_dssp             ECCG
T ss_pred             cCCc
Confidence            8543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.89  E-value=2.1e-09  Score=103.76  Aligned_cols=99  Identities=16%  Similarity=0.122  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEE-EEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~-~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.++||||||+|.++..|++. +..+|+|+|+|+.|++.+.++     ..++. +...|+..+..+.+  +..+||.++
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~-----~~rv~~~~~~ni~~l~~~~l--~~~~fD~v~  156 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ-----DDRVRSMEQYNFRYAEPVDF--TEGLPSFAS  156 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT-----CTTEEEECSCCGGGCCGGGC--TTCCCSEEE
T ss_pred             cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh-----CcccceecccCceecchhhC--CCCCCCEEE
Confidence            4679999999999999999887 557999999999999876442     12333 33456554422222  244599988


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +...-.+         +  ..+|.++.++|||||.|++.
T Consensus       157 ~d~sf~s---------l--~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          157 IDVSFIS---------L--NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             ECCSSSC---------G--GGTHHHHHHHSCTTCEEEEE
T ss_pred             EEeeHhh---------H--HHHHHHHHHHcCcCCEEEEE
Confidence            7532111         1  36899999999999999885

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.87  E-value=3.5e-09  Score=108.38  Aligned_cols=112  Identities=19%  Similarity=0.163  Sum_probs=85.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC-------------CCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhh
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR-------------KDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRS  295 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~-------------P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~  295 (420)
                      +.+|+|.|||+|.+++.+++..             +..+++|+|+++.+++.|+.++..+++.  ++.+.++|+....  
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~--  249 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE--  249 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC--
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc--
Confidence            5689999999999999988763             4578999999999999999999888886  7889999987651  


Q ss_pred             hhccCCCeEeEEEEeCCCCCCCCcchhh-----h------hhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          296 IVASYPGKLILVSIQCPNPDFNRPEHRW-----R------MVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       296 ~~~~~~~~~d~i~~~fpdp~~k~~~~k~-----R------l~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                          ....||.|+.+  .|+........     .      -.+..|+..+.+.|||||++.+.+..
T Consensus       250 ----~~~~fD~Iv~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          250 ----PSTLVDVILAN--PPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             ----CSSCEEEEEEC--CCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ----ccCCcCEEEEC--CCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence                23489999988  34322111100     0      01247999999999999999887643

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.87  E-value=6.1e-09  Score=109.84  Aligned_cols=75  Identities=19%  Similarity=0.281  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +-+|||||||.|.++..||+.  +.+|+|||.|+.+|+.|+..+.+.+..|+.|.++++.++... +  .+++||.|++.
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~-~--~~~~fD~v~~~  141 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA-L--EEGEFDLAIGL  141 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH-C--CTTSCSEEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh-c--cCCCccEEEEC
Confidence            468999999999999999998  789999999999999999999888877899999999987422 2  46789999876

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.86  E-value=8.6e-09  Score=100.17  Aligned_cols=80  Identities=9%  Similarity=0.145  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~  308 (420)
                      ++.++||+|||+|.++..+++++|+.+++|+|+|+.+++.|++++...+ .|++|+++|+.++ +..+.. ...+||.|+
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l-~~~l~~~g~~~~D~Vl  103 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA-DFLLKTLGIEKVDGIL  103 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH-HHHHHHTTCSCEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHH-HHHHHhcCCCCCCEEE
Confidence            4679999999999999999999998999999999999999999998877 7899999999876 322211 125799998


Q ss_pred             EeC
Q 014711          309 IQC  311 (420)
Q Consensus       309 ~~f  311 (420)
                      +..
T Consensus       104 ~D~  106 (301)
T 1m6y_A          104 MDL  106 (301)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            753

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.83  E-value=3.8e-09  Score=93.55  Aligned_cols=107  Identities=13%  Similarity=0.098  Sum_probs=79.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||.                +++|+|+.|++.|+++...    +++++++|+.++.  ..+.++++||.|++
T Consensus        12 ~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~--~~~~~~~~fD~V~~   69 (176)
T 2ld4_A           12 AGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLL--QSAHKESSFDIILS   69 (176)
T ss_dssp             TTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGG--GGCCCSSCEEEEEE
T ss_pred             CCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCc--cccCCCCCEeEEEE
Confidence            478999999996                2499999999999988632    5899999998762  10114789999998


Q ss_pred             eCCCCCC-CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH---------HHHHHHHHHHHcCC
Q 014711          310 QCPNPDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------VMLRMKQQFLEYGK  366 (420)
Q Consensus       310 ~fpdp~~-k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~---------~~~~~~~~l~~~g~  366 (420)
                      ++.-.|. .+  .      .+++++++++|||||+|++......         ..+++.+.+++.||
T Consensus        70 ~~~l~~~~~~--~------~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           70 GLVPGSTTLH--S------AEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             CCSTTCCCCC--C------HHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             CChhhhcccC--H------HHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            7544443 11  1      3899999999999999999642110         14567888999998

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.80  E-value=3e-08  Score=92.77  Aligned_cols=100  Identities=14%  Similarity=-0.074  Sum_probs=76.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ....|||||||.|-+++.+.   |...|+|+||++.+++.+++++...+ .+.++..+|.....      +++++|.+.+
T Consensus       105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~------~~~~~DvvLl  174 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAP------PAEAGDLALI  174 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSC------CCCBCSEEEE
T ss_pred             CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCC------CCCCcchHHH
Confidence            46799999999999999877   89999999999999999999988777 67899999997652      4678999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      +-      .-|+--+.-....+ .+.+.|++++.++-
T Consensus       175 lk------~lh~LE~q~~~~~~-~ll~aL~~~~vvVs  204 (253)
T 3frh_A          175 FK------LLPLLEREQAGSAM-ALLQSLNTPRMAVS  204 (253)
T ss_dssp             ES------CHHHHHHHSTTHHH-HHHHHCBCSEEEEE
T ss_pred             HH------HHHHhhhhchhhHH-HHHHHhcCCCEEEE
Confidence            72      21221111112333 77779999987764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.79  E-value=6.7e-09  Score=102.96  Aligned_cols=96  Identities=18%  Similarity=0.244  Sum_probs=74.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ..+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      .++++++++|+.+-    +   + .+|.|++.
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~---~-~~D~v~~~  258 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFKS----I---P-SADAVLLK  258 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTTC----C---C-CCSEEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCCC----C---C-CceEEEEc
Confidence            57899999999999999999999999999999 788876643      36799999998652    2   2 48999887


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccC---CeEEEEE
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVH---DGKVFLQ  347 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkp---gG~l~~~  347 (420)
                      ..-.++  ...    ....+|++++++|+|   ||++++.
T Consensus       259 ~vlh~~--~d~----~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          259 WVLHDW--NDE----QSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             SCGGGS--CHH----HHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             ccccCC--CHH----HHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            432211  111    113799999999999   9999885

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.78  E-value=9.6e-09  Score=97.66  Aligned_cols=75  Identities=17%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCCh-------HHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCC-
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNG-------KLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYP-  301 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~-------~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~-  301 (420)
                      +.+|||+|||+|.+++.+|+.  ..+|+|+|+|+       .+++.|++++..+++.| ++++++|+.++++.+   ++ 
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~---~~~  158 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPAL---VKT  158 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHH---HHH
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhh---hcc
Confidence            578999999999999999997  57999999999       99999999988888766 999999999875422   23 


Q ss_pred             -CeEeEEEEe
Q 014711          302 -GKLILVSIQ  310 (420)
Q Consensus       302 -~~~d~i~~~  310 (420)
                       .+||.|+++
T Consensus       159 ~~~fD~V~~d  168 (258)
T 2r6z_A          159 QGKPDIVYLD  168 (258)
T ss_dssp             HCCCSEEEEC
T ss_pred             CCCccEEEEC
Confidence             689999886

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.76  E-value=1.5e-08  Score=102.37  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=78.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--CCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +.+|||+|||+|..++.+|+.  ..+|+|+|+|+.+++.|++|+...  |+.|++++++|+.++++..   .+.+||.|+
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~---~~~~fDvV~  168 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLI---KTFHPDYIY  168 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHH---HHHCCSEEE
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhc---cCCCceEEE
Confidence            688999999999999999987  579999999999999999999988  8889999999999864321   135799998


Q ss_pred             EeCCCCCCCCcchhhhhh-----HHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMV-----QRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~-----~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++   |..... +.+|++     .|.+......++.....+.++.
T Consensus       169 lD---PPrr~~-~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~  209 (410)
T 3ll7_A          169 VD---PARRSG-ADKRVYAIADCEPDLIPLATELLPFCSSILAKL  209 (410)
T ss_dssp             EC---CEEC------CCCCGGGEESCHHHHHHHHGGGSSEEEEEE
T ss_pred             EC---CCCcCC-CCceEEehhhcCCCHHHHHHHHHhhCCcEEEEc
Confidence            74   422221 122322     2444443333444556666664

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.75  E-value=4.9e-08  Score=94.55  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.++..|++.  ..+|+|+|+++.+++.+++++.  +..|++++++|+.++.   +  ++.++|.|+.
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~---~--~~~~fD~Iv~  120 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVD---L--NKLDFNKVVA  120 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSC---G--GGSCCSEEEE
T ss_pred             CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCC---c--ccCCccEEEE
Confidence            4678999999999999999998  5799999999999999999886  4568999999998761   1  3457999998


Q ss_pred             eCC
Q 014711          310 QCP  312 (420)
Q Consensus       310 ~fp  312 (420)
                      +.|
T Consensus       121 NlP  123 (295)
T 3gru_A          121 NLP  123 (295)
T ss_dssp             ECC
T ss_pred             eCc
Confidence            844

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.73  E-value=5.7e-08  Score=93.70  Aligned_cols=128  Identities=16%  Similarity=0.242  Sum_probs=101.3

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-----CCCcEEEEEcChhhhhhhhhccCCCe
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----GITNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-----~l~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      ++..+||=||-|.|..+.++++..|..+++.+||++..++.|++.....     .-++++++.+|+..++..    ..++
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~----~~~~  157 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ----TSQT  157 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC----SSCC
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh----cccc
Confidence            4678999999999999999998877889999999999999999876432     235799999999988632    4678


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      ||.|++..+||+-.    ...|.+.+|++.+.++|+|||.+..++..    ......+.+.+.+.
T Consensus       158 yDvIi~D~~dp~~~----~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~  218 (294)
T 3o4f_A          158 FDVIISDCTDPIGP----GESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY  218 (294)
T ss_dssp             EEEEEESCCCCCCT----TCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcCCC----chhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh
Confidence            99999998888632    23477789999999999999999997632    22233455555554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.68  E-value=1.2e-07  Score=102.16  Aligned_cols=118  Identities=17%  Similarity=0.169  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh------------------------------------------CCCCeEEEEeCChHHH
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK------------------------------------------RKDLNFLGLEVNGKLV  267 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~------------------------------------------~P~~~viGiDis~~~i  267 (420)
                      .+..+||.+||+|.++++.|..                                          .++..++|+|+++.++
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            3567999999999999998865                                          2346899999999999


Q ss_pred             HHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhh--hhhHHHHHHHHHhhccCCeEE
Q 014711          268 THCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW--RMVQRSLVEAVSDLLVHDGKV  344 (420)
Q Consensus       268 ~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~--Rl~~~~~l~~i~~~LkpgG~l  344 (420)
                      +.|++|+...|+.+ ++|.++|+.++..   +...+++|.|++|  .|+-..-..+.  .-+. +-+.+..+.+.|||.+
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~---~~~~~~~d~Iv~N--PPYG~Rlg~~~~l~~ly-~~l~~~lk~~~~g~~~  343 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTN---PLPKGPYGTVLSN--PPYGERLDSEPALIALH-SLLGRIMKNQFGGWNL  343 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCC---SCTTCCCCEEEEC--CCCCC---CCHHHHHHH-HHHHHHHHHHCTTCEE
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCcc---ccccCCCCEEEeC--CCccccccchhHHHHHH-HHHHHHHHhhCCCCeE
Confidence            99999999999986 9999999988621   1112379999997  55522111010  1111 2234445556689999


Q ss_pred             EEEeCcHHH
Q 014711          345 FLQSDIEEV  353 (420)
Q Consensus       345 ~~~td~~~~  353 (420)
                      ++-|.++.+
T Consensus       344 ~ilt~~~~l  352 (703)
T 3v97_A          344 SLFSASPDL  352 (703)
T ss_dssp             EEEESCHHH
T ss_pred             EEEeCCHHH
Confidence            999977665

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.67  E-value=5.1e-08  Score=92.47  Aligned_cols=74  Identities=19%  Similarity=0.129  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-hhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-RSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-~~~~~~~~~~~d~i~  308 (420)
                      ++..|||||||+|.++..|+++.  .+++|+|+++.+++.+++++..  ..|++++++|+.++. ++.+  .+.++| |+
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~--~~~~~~-vv  101 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVK--TDKPLR-VV  101 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSC--CSSCEE-EE
T ss_pred             CcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhc--cCCCeE-EE
Confidence            46789999999999999999884  7999999999999999998764  568999999998872 2211  135677 66


Q ss_pred             Ee
Q 014711          309 IQ  310 (420)
Q Consensus       309 ~~  310 (420)
                      .|
T Consensus       102 ~N  103 (255)
T 3tqs_A          102 GN  103 (255)
T ss_dssp             EE
T ss_pred             ec
Confidence            77

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.66  E-value=5e-10  Score=105.37  Aligned_cols=108  Identities=14%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.++..+++..  .+++|+|+|+.+++.|++++.  ...|++++++|+.++.   ++ .+++| .|+.
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~---~~-~~~~f-~vv~   99 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQ---FP-NKQRY-KIVG   99 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTT---CC-CSSEE-EEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcC---cc-cCCCc-EEEE
Confidence            46789999999999999999984  799999999999999988765  3468999999998761   11 13578 6666


Q ss_pred             eCCCCCCCCcchhhhhh-----HHHHH----HHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMV-----QRSLV----EAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~-----~~~~l----~~i~~~LkpgG~l~~~t  348 (420)
                      +  .|+......-..+.     ...++    +.+.++|+|||.+.+.+
T Consensus       100 n--~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          100 N--IPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             E--CCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             e--CCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            6  34422211100110     01233    56788888988876643

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.63  E-value=5.7e-07  Score=89.29  Aligned_cols=128  Identities=12%  Similarity=0.051  Sum_probs=96.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC------CcEEEEEcChhhhhhhhhccCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI------TNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l------~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      .+.+|||+++|.|.=+.+||+..+...++++|+++..+...++++++.+.      .|+.+.+.|+..+ ...   ..+.
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~-~~~---~~~~  223 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW-GEL---EGDT  223 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH-HHH---STTC
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc-chh---cccc
Confidence            47899999999999999999988778899999999999999999988765      4799999999886 222   3678


Q ss_pred             EeEEEEeCC-----------CCCCCCcchhh---h--hhHHHHHHHHHhhccCCeEEEEEe------CcHHHHHHHHHHH
Q 014711          304 LILVSIQCP-----------NPDFNRPEHRW---R--MVQRSLVEAVSDLLVHDGKVFLQS------DIEEVMLRMKQQF  361 (420)
Q Consensus       304 ~d~i~~~fp-----------dp~~k~~~~k~---R--l~~~~~l~~i~~~LkpgG~l~~~t------d~~~~~~~~~~~l  361 (420)
                      ||.|.+.-|           +|..+.+....   +  -+|.++|..+.+.|||||+++-.|      .++...+++++..
T Consensus       224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~  303 (359)
T 4fzv_A          224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELL  303 (359)
T ss_dssp             EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHH
T ss_pred             CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhC
Confidence            999988633           11111111111   1  245789999999999999999887      3455555554443

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.59  E-value=1e-07  Score=99.88  Aligned_cols=128  Identities=16%  Similarity=0.135  Sum_probs=92.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCC------------------CCeEEEEeCChHHHHHHHHHhHHhCCCc-----EEEEEc
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRK------------------DLNFLGLEVNGKLVTHCRDSLQLSGITN-----GYFIAT  287 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P------------------~~~viGiDis~~~i~~A~~~~~~~~l~n-----v~~~~~  287 (420)
                      +.+|+|.+||+|.+++.+++...                  ..+++|+|+++.+++.|+.++..+++.+     +.+.++
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g  249 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  249 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence            56899999999999999887531                  2479999999999999999998888876     889999


Q ss_pred             ChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchh--------hhhhHHHHHHHHHhhccCCeEEEEEeCcHHH-----H
Q 014711          288 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR--------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----M  354 (420)
Q Consensus       288 Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k--------~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~-----~  354 (420)
                      |+.....  .  ....||.|+.|  .|+.......        ..-....|+..+.+.|||||++.+.+.+..+     .
T Consensus       250 DtL~~~~--~--~~~~fD~Vv~N--PPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~  323 (541)
T 2ar0_A          250 NTLGSDG--E--NLPKAHIVATN--PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG  323 (541)
T ss_dssp             CTTSHHH--H--TSCCEEEEEEC--CCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH
T ss_pred             CCccccc--c--cccCCeEEEEC--CCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHH
Confidence            9876421  1  35679999988  4442221100        0011237999999999999999988644322     3


Q ss_pred             HHHHHHHHHc
Q 014711          355 LRMKQQFLEY  364 (420)
Q Consensus       355 ~~~~~~l~~~  364 (420)
                      ..+++.+.+.
T Consensus       324 ~~iR~~L~~~  333 (541)
T 2ar0_A          324 TDIRRDLMDK  333 (541)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            4466655544

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.59  E-value=4e-07  Score=83.16  Aligned_cols=102  Identities=13%  Similarity=0.033  Sum_probs=77.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC---CcEEEEEcChhhh--------------h
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI---TNGYFIATNATST--------------F  293 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l---~nv~~~~~Da~~~--------------~  293 (420)
                      ..+|||||||  .+++.+|+. ++.+++.+|.+++..+.|++++.+.|+   .|++++.+|+.+.              +
T Consensus        31 a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            5789999985  688888874 589999999999999999999999885   5799999997542              1


Q ss_pred             hhhh----cc-CCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          294 RSIV----AS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       294 ~~~~----~~-~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      +.+.    .. ..++||.|++.   .-      + |   ...+..+.+.|+|||.+++  |+
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfID---g~------k-~---~~~~~~~l~~l~~GG~Iv~--DN  154 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVD---GR------F-R---VGCALATAFSITRPVTLLF--DD  154 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEEC---SS------S-H---HHHHHHHHHHCSSCEEEEE--TT
T ss_pred             HHHhhhhhccccCCCCCEEEEe---CC------C-c---hhHHHHHHHhcCCCeEEEE--eC
Confidence            2111    11 13689999885   21      1 1   1566667799999999966  54

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.59  E-value=4.1e-07  Score=85.44  Aligned_cols=59  Identities=20%  Similarity=0.277  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~  292 (420)
                      ++..|||||||+|.++..++++.  .+++|+|+|+.+++.+++++..  ..|++++++|+.++
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~   88 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQF   88 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGC
T ss_pred             CCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhC
Confidence            46789999999999999999985  7899999999999999998753  36899999999876

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.58  E-value=3.9e-07  Score=95.32  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=97.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC---CCCeEEEEeCChHHHHHHHHHhHHhCC--CcEEEEEcChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~---P~~~viGiDis~~~i~~A~~~~~~~~l--~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      .+.+|+|.+||+|.+++.+++..   +..+++|+|+++.++..|+.++..+|+  .++.+.++|.....  +.......|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d--~p~~~~~~f  298 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDED--WPTQEPTNF  298 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSC--SCCSSCCCB
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccc--ccccccccc
Confidence            46789999999999999998874   467899999999999999999988888  57999999987541  100135689


Q ss_pred             eEEEEeCCCCCCCCcc------hhhhh-----------hHHHHHHHHHhhcc-CCeEEEEEeCcHHH-----HHHHHHHH
Q 014711          305 ILVSIQCPNPDFNRPE------HRWRM-----------VQRSLVEAVSDLLV-HDGKVFLQSDIEEV-----MLRMKQQF  361 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~------~k~Rl-----------~~~~~l~~i~~~Lk-pgG~l~~~td~~~~-----~~~~~~~l  361 (420)
                      |.|+.|  .|+.....      ...|.           .+-.|+..+.+.|+ |||++.+.+.+..+     ...+++.+
T Consensus       299 D~IvaN--PPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~L  376 (542)
T 3lkd_A          299 DGVLMN--PPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKAL  376 (542)
T ss_dssp             SEEEEC--CCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHH
T ss_pred             cEEEec--CCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHH
Confidence            999998  45432210      00111           11358999999999 99999887654433     34567766


Q ss_pred             HHcCC
Q 014711          362 LEYGK  366 (420)
Q Consensus       362 ~~~g~  366 (420)
                      .+.+.
T Consensus       377 le~~~  381 (542)
T 3lkd_A          377 LEEGA  381 (542)
T ss_dssp             HHTTC
T ss_pred             HhCCc
Confidence            66543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.53  E-value=4.3e-07  Score=97.70  Aligned_cols=129  Identities=11%  Similarity=0.102  Sum_probs=89.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC---CCeEEEEeCChHHHHHH--HHHhHH----hCCCcEEEEEcChhhhhhhhhccC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK---DLNFLGLEVNGKLVTHC--RDSLQL----SGITNGYFIATNATSTFRSIVASY  300 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P---~~~viGiDis~~~i~~A--~~~~~~----~~l~nv~~~~~Da~~~~~~~~~~~  300 (420)
                      .+.+|||.|||+|.+++.+++..+   ..+++|+|+++.+++.|  +.++..    ++..+..+...|.....  ..  .
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~--~~--~  396 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLN--PE--D  396 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCC--GG--G
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccc--cc--c
Confidence            367999999999999999998875   35899999999999999  555543    34444566667765531  11  2


Q ss_pred             CCeEeEEEEeCCCCCCCCcc--h-----hhhh----------------hHHHHHHHHHhhccCCeEEEEEeCcHHH----
Q 014711          301 PGKLILVSIQCPNPDFNRPE--H-----RWRM----------------VQRSLVEAVSDLLVHDGKVFLQSDIEEV----  353 (420)
Q Consensus       301 ~~~~d~i~~~fpdp~~k~~~--~-----k~Rl----------------~~~~~l~~i~~~LkpgG~l~~~td~~~~----  353 (420)
                      ...||.|..|  .|+.....  .     ..|+                +...|+..+.+.|+|||++.+.+....+    
T Consensus       397 ~~kFDVVIgN--PPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg  474 (878)
T 3s1s_A          397 FANVSVVVMN--PPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQG  474 (878)
T ss_dssp             GTTEEEEEEC--CBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCS
T ss_pred             cCCCCEEEEC--CCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCC
Confidence            4679999998  56632111  0     0111                2346899999999999999998755443    


Q ss_pred             --HHHHHHHHHHc
Q 014711          354 --MLRMKQQFLEY  364 (420)
Q Consensus       354 --~~~~~~~l~~~  364 (420)
                        ...+++.+.+.
T Consensus       475 ~~~kkLRk~LLe~  487 (878)
T 3s1s_A          475 NESKAFREFLVGN  487 (878)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHhC
Confidence              34566665544

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.52  E-value=2.6e-07  Score=88.68  Aligned_cols=59  Identities=15%  Similarity=0.127  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC--CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~--~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~  292 (420)
                      ++..|||||||+|.++..|++..+.  .+++|+|+++.+++.++++.    ..|++++++|+.++
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTF  102 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGC
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcC
Confidence            4678999999999999999998543  55999999999999999983    45899999999886

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.50  E-value=1.7e-07  Score=89.57  Aligned_cols=73  Identities=14%  Similarity=0.083  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++ .|||||||+|.++..|++..  .+|+|+|+++.+++.+++++..   .|++++++|+.++.   ++ ....+|.|+.
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~---~~-~~~~~~~iv~  116 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYP---WE-EVPQGSLLVA  116 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSC---GG-GSCTTEEEEE
T ss_pred             CC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCC---hh-hccCccEEEe
Confidence            35 89999999999999999984  7899999999999999998752   58999999998862   11 0124688888


Q ss_pred             eCC
Q 014711          310 QCP  312 (420)
Q Consensus       310 ~fp  312 (420)
                      |.|
T Consensus       117 NlP  119 (271)
T 3fut_A          117 NLP  119 (271)
T ss_dssp             EEC
T ss_pred             cCc
Confidence            843

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.45  E-value=1.2e-06  Score=86.98  Aligned_cols=120  Identities=14%  Similarity=0.170  Sum_probs=91.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-----C---CCcEEEEEcChhhhhhhhhccCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----G---ITNGYFIATNATSTFRSIVASYP  301 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-----~---l~nv~~~~~Da~~~~~~~~~~~~  301 (420)
                      ++.+||=||-|.|..+.++.+. |..+++.+||++..++.|++.....     .   -++++++.+|+..++.+... ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~-~~  282 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK-EG  282 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH-HT
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh-cc
Confidence            4678999999999999999875 5589999999999999999875321     1   13599999999998754321 24


Q ss_pred             CeEeEEEEeCCCCCCCC--cchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          302 GKLILVSIQCPNPDFNR--PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~k~--~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      ..||.|++..+||....  ......++.++|++.+.+.|+|||.++.++...
T Consensus       283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~  334 (381)
T 3c6k_A          283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV  334 (381)
T ss_dssp             CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET
T ss_pred             CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence            67999999877654221  233446778899999999999999999876543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.44  E-value=6.9e-07  Score=84.30  Aligned_cols=58  Identities=17%  Similarity=0.233  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~  292 (420)
                      ++..|||||||+|.++..|++. +..+++|+|+++.+++.++++    ...|++++++|+.++
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKF   88 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTC
T ss_pred             CcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhC
Confidence            4678999999999999999987 568999999999999999876    346899999999886

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.43  E-value=2.4e-07  Score=87.96  Aligned_cols=73  Identities=21%  Similarity=0.209  Sum_probs=58.4

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-------C-C-CcEEEEEcChhhhhhhhhccCCC
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-------G-I-TNGYFIATNATSTFRSIVASYPG  302 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-------~-l-~nv~~~~~Da~~~~~~~~~~~~~  302 (420)
                      .+|||+|||+|..++.+|.+  ..+|+++|+++.+++.++++++..       + + .|++++++|+.++++. +   +.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~-~---~~  163 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I---TP  163 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT-C---SS
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh-C---cc
Confidence            78999999999999999998  568999999998877766654432       2 4 5799999999987532 1   34


Q ss_pred             eEeEEEEe
Q 014711          303 KLILVSIQ  310 (420)
Q Consensus       303 ~~d~i~~~  310 (420)
                      +||.|++.
T Consensus       164 ~fDvV~lD  171 (258)
T 2oyr_A          164 RPQVVYLD  171 (258)
T ss_dssp             CCSEEEEC
T ss_pred             cCCEEEEc
Confidence            69999885

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.40  E-value=2.3e-06  Score=82.15  Aligned_cols=123  Identities=10%  Similarity=0.012  Sum_probs=90.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC-----CCCeEEEEeCCh--------------------------HHHHHHHHHhHHhCC
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEVNG--------------------------KLVTHCRDSLQLSGI  279 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~-----P~~~viGiDis~--------------------------~~i~~A~~~~~~~~l  279 (420)
                      ...|||+||..|..++.||+..     |+.+++++|..+                          ..++.+++++.+.|+
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            5689999999999999998764     588999999642                          146788999999997


Q ss_pred             --CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHH
Q 014711          280 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEV  353 (420)
Q Consensus       280 --~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~  353 (420)
                        ++++++.+|+.+.++..   ++.++|.|++-. |     ...    -....|+.+...|+|||.+++  |+    +..
T Consensus       187 ~~~~I~li~Gda~etL~~~---~~~~~d~vfIDa-D-----~y~----~~~~~Le~~~p~L~pGGiIv~--DD~~~~~G~  251 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPTA---PIDTLAVLRMDG-D-----LYE----STWDTLTNLYPKVSVGGYVIV--DDYMMCPPC  251 (282)
T ss_dssp             CSTTEEEEESCHHHHSTTC---CCCCEEEEEECC-C-----SHH----HHHHHHHHHGGGEEEEEEEEE--SSCTTCHHH
T ss_pred             CcCceEEEEeCHHHHHhhC---CCCCEEEEEEcC-C-----ccc----cHHHHHHHHHhhcCCCEEEEE--cCCCCCHHH
Confidence              68999999998876532   356899998852 2     100    113789999999999999987  44    333


Q ss_pred             HHHHHHHHHHcCCce
Q 014711          354 MLRMKQQFLEYGKGK  368 (420)
Q Consensus       354 ~~~~~~~l~~~g~~~  368 (420)
                      .+.+.+.++++++..
T Consensus       252 ~~Av~Ef~~~~~i~~  266 (282)
T 2wk1_A          252 KDAVDEYRAKFDIAD  266 (282)
T ss_dssp             HHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHhcCCce
Confidence            344555556666543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.34  E-value=5.1e-07  Score=94.53  Aligned_cols=129  Identities=15%  Similarity=0.038  Sum_probs=90.4

Q ss_pred             CEEEEEcCCccHHHHHHHHhCC---------------CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhh
Q 014711          232 PLVVDIGSGNGLFLLGMARKRK---------------DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRS  295 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P---------------~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~  295 (420)
                      .+|+|.+||+|.+++.+++..+               ..+++|+|+++.++..|+.++..+++. ++.+.++|.... + 
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~-~-  323 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD-D-  323 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS-C-
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC-c-
Confidence            4899999999999998865432               468999999999999999999888875 444478887653 1 


Q ss_pred             hhccCCCeEeEEEEeCCCCCCCCc-ch-----hhhh-----------------hHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014711          296 IVASYPGKLILVSIQCPNPDFNRP-EH-----RWRM-----------------VQRSLVEAVSDLLVHDGKVFLQSDIEE  352 (420)
Q Consensus       296 ~~~~~~~~~d~i~~~fpdp~~k~~-~~-----k~Rl-----------------~~~~~l~~i~~~LkpgG~l~~~td~~~  352 (420)
                      .+  .+..||.|+.|  .|+.... ..     ..|.                 .+-.|+..+.+.|+|||++.+.+.+..
T Consensus       324 ~~--~~~~fD~Iv~N--PPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~  399 (544)
T 3khk_A          324 QH--PDLRADFVMTN--PPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS  399 (544)
T ss_dssp             SC--TTCCEEEEEEC--CCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH
T ss_pred             cc--ccccccEEEEC--CCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh
Confidence            11  35689999998  4553211 00     0010                 112699999999999999888764322


Q ss_pred             ------HHHHHHHHHHHcCC
Q 014711          353 ------VMLRMKQQFLEYGK  366 (420)
Q Consensus       353 ------~~~~~~~~l~~~g~  366 (420)
                            ....+++.+.+.+.
T Consensus       400 L~~~~~~~~~iRk~Lle~~~  419 (544)
T 3khk_A          400 MSSNTNNEGEIRKTLVEQDL  419 (544)
T ss_dssp             HHCCGGGHHHHHHHHHHTTC
T ss_pred             hhcCcchHHHHHHHHHhCCc
Confidence                  23457776666553

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.22  E-value=8.9e-07  Score=83.71  Aligned_cols=77  Identities=13%  Similarity=0.047  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-hhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-RSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-~~~~~~~~~~~d~i~  308 (420)
                      .+..|||||||+|.++. +++ .+..+++|+|+++.+++.+++++..  ..|++++++|+.++. ++.+. .+...+.|+
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~~~~~~~~-~~~~~~~vv   95 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGELAE-KMGQPLRVF   95 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHHHH-HHTSCEEEE
T ss_pred             CcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhCCHHHhhc-ccCCceEEE
Confidence            35789999999999999 654 4434499999999999999887653  258999999998851 22220 012346777


Q ss_pred             EeC
Q 014711          309 IQC  311 (420)
Q Consensus       309 ~~f  311 (420)
                      .|.
T Consensus        96 sNl   98 (252)
T 1qyr_A           96 GNL   98 (252)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            774

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.08  E-value=1.2e-05  Score=85.26  Aligned_cols=101  Identities=14%  Similarity=0.188  Sum_probs=72.5

Q ss_pred             CCEEEEEcCCccHH---HHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEe
Q 014711          231 QPLVVDIGSGNGLF---LLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       231 ~~~vLDIGcG~G~~---~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ..+|||||||+|-+   ++..+++. -..+|+++|.|+ +...|++...+++..+ |+++++|++++.      .++.+|
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~------LPEKVD  430 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV------APEKAD  430 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC------CSSCEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc------CCcccC
Confidence            35899999999988   44444442 234789999997 5667888888888875 999999999872      367899


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV  344 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l  344 (420)
                      .|+.-...-. -..+   .+  ++.+....+.|||||.+
T Consensus       431 IIVSEwMG~f-Ll~E---~m--levL~Ardr~LKPgGim  463 (637)
T 4gqb_A          431 IIVSELLGSF-ADNE---LS--PECLDGAQHFLKDDGVS  463 (637)
T ss_dssp             EEECCCCBTT-BGGG---CH--HHHHHHHGGGEEEEEEE
T ss_pred             EEEEEcCccc-cccc---CC--HHHHHHHHHhcCCCcEE
Confidence            9976432221 0001   11  46788889999999985

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.08  E-value=2.5e-05  Score=78.07  Aligned_cols=167  Identities=11%  Similarity=0.091  Sum_probs=103.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHh-----------------CCCCeEEEEeCC-----------hHHHHHHHHHhHHhCC-Cc
Q 014711          231 QPLVVDIGSGNGLFLLGMARK-----------------RKDLNFLGLEVN-----------GKLVTHCRDSLQLSGI-TN  281 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~-----------------~P~~~viGiDis-----------~~~i~~A~~~~~~~~l-~n  281 (420)
                      ..+|+|+||++|..++.+...                 .|+.+|+.-|+-           +...+.+++   ..+. .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            578999999999999887765                 578899999988           444433222   1221 23


Q ss_pred             EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchh-----------hh----------h-------hH---HHH
Q 014711          282 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR-----------WR----------M-------VQ---RSL  330 (420)
Q Consensus       282 v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k-----------~R----------l-------~~---~~~  330 (420)
                      -.|+.+....+....|  +++++|.++.++.-.|..+....           .+          +       .+   ..|
T Consensus       130 ~~f~~gvpgSFy~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F  207 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLF--PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF  207 (384)
T ss_dssp             SEEEEECCSCTTSCCS--CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccC--CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            4777787777655556  68999999999877774432100           00          0       00   356


Q ss_pred             HHHHHhhccCCeEEEEEe---CcH--H-----HHHHHHHHHHHcCCceeEeeccccccccCCCCCCCCCCCCCC--CHHH
Q 014711          331 VEAVSDLLVHDGKVFLQS---DIE--E-----VMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR--SDWE  398 (420)
Q Consensus       331 l~~i~~~LkpgG~l~~~t---d~~--~-----~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--T~~E  398 (420)
                      |+..++.|+|||++++.+   ++.  .     ....+++.+...|.-..+ .-|-         +  ..|...+  .+++
T Consensus       208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~e-k~ds---------f--~~P~y~ps~~E~~  275 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEE-KLDS---------F--NVPIYAPSTEEVK  275 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHH-HHHT---------C--CCSBCCCCHHHHH
T ss_pred             HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchh-hhcc---------c--CCcccCCCHHHHH
Confidence            888899999999999985   222  2     455566666666642211 1111         1  1233334  4555


Q ss_pred             HHHHHCC-CCeEEEEEE
Q 014711          399 QHVIDRG-APMYRLMLS  414 (420)
Q Consensus       399 ~~~~~~G-~~i~~~~~~  414 (420)
                      ....+.| +.|.++...
T Consensus       276 ~~le~~g~F~i~~le~~  292 (384)
T 2efj_A          276 RIVEEEGSFEILYLETF  292 (384)
T ss_dssp             HHHHHHCSEEEEEEEEE
T ss_pred             HHHHHcCCceEEEEEEE
Confidence            5566665 577776544

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.00  E-value=1.9e-05  Score=78.66  Aligned_cols=117  Identities=13%  Similarity=0.104  Sum_probs=74.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHH--------hC-------CCCeEEEEeCChHHHHHHHHHhHHhC-----------C-CcE
Q 014711          230 AQPLVVDIGSGNGLFLLGMAR--------KR-------KDLNFLGLEVNGKLVTHCRDSLQLSG-----------I-TNG  282 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~--------~~-------P~~~viGiDis~~~i~~A~~~~~~~~-----------l-~nv  282 (420)
                      ...+|+|+|||+|..++.+..        ++       |+.+|+.-|+-.......-+.+....           . .+-
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence            357899999999999988732        22       67778888877666554444433210           0 011


Q ss_pred             EEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhh-----------h------------h-------hHHHHHH
Q 014711          283 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW-----------R------------M-------VQRSLVE  332 (420)
Q Consensus       283 ~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~-----------R------------l-------~~~~~l~  332 (420)
                      .|+.+....+....|  +++++|.|+.++.-.|..+....-           +            .       .-..||+
T Consensus       132 ~f~~gvpgSFy~rlf--P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~  209 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLF--PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR  209 (374)
T ss_dssp             SEEEEEESCTTSCCS--CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccC--CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            344444444433344  589999999998888855322100           0            0       0136789


Q ss_pred             HHHhhccCCeEEEEEe
Q 014711          333 AVSDLLVHDGKVFLQS  348 (420)
Q Consensus       333 ~i~~~LkpgG~l~~~t  348 (420)
                      ..++.|+|||++++.+
T Consensus       210 ~ra~eL~pGG~mvl~~  225 (374)
T 3b5i_A          210 ARAAEVKRGGAMFLVC  225 (374)
T ss_dssp             HHHHHEEEEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEEE
Confidence            9999999999999875

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.98  E-value=1.4e-05  Score=68.68  Aligned_cols=85  Identities=13%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             CCEEEEEcCCcc-HHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNG-LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G-~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ..++||||||+| ..+..|+++ .+..|+++|+++.++.               |++.|+.+-..+.    -..+|.||.
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------------~v~dDiF~P~~~~----Y~~~DLIYs   95 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------------IVRDDITSPRMEI----YRGAALIYS   95 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------------EECCCSSSCCHHH----HTTEEEEEE
T ss_pred             CCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------------eEEccCCCCcccc----cCCcCEEEE
Confidence            469999999999 699999974 2688999999998775               8899997642211    137999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +=|.|.          +++.+++...++   |.-+++.+
T Consensus        96 irPP~E----------l~~~i~~lA~~v---~adliI~p  121 (153)
T 2k4m_A           96 IRPPAE----------IHSSLMRVADAV---GARLIIKP  121 (153)
T ss_dssp             ESCCTT----------THHHHHHHHHHH---TCEEEEEC
T ss_pred             cCCCHH----------HHHHHHHHHHHc---CCCEEEEc
Confidence            756553          444454444333   67777765

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.96  E-value=2e-05  Score=83.72  Aligned_cols=108  Identities=9%  Similarity=-0.020  Sum_probs=73.0

Q ss_pred             CCEEEEEcCCccHHHHH---HHH-hC---------CCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhh
Q 014711          231 QPLVVDIGSGNGLFLLG---MAR-KR---------KDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSI  296 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~---lA~-~~---------P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~  296 (420)
                      ..+|||||||+|-+...   .++ ..         ...+|+++|.|+.++...+++.. ++..+ |+++++|++++....
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            46899999999999632   222 11         24599999999988866665553 77765 999999999883100


Q ss_pred             hccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          297 VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       297 ~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      -...++.+|.|+.-...-. -     ...+.++.|..+.+.|||||.++
T Consensus       489 ~~~~~ekVDIIVSElmGsf-l-----~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELLGSF-G-----DNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTTCCCCSEEEECCCBTT-B-----GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCCCCcccEEEEeccccc-c-----chhccHHHHHHHHHhCCCCcEEE
Confidence            0002567999976533221 0     01134688888899999999753

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.93  E-value=3e-05  Score=73.94  Aligned_cols=73  Identities=15%  Similarity=0.152  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~  308 (420)
                      ++.++||.+||.|.++..++++  +.+++|+|.++.+++.|++ +..   .+++++++|..++ ..++.. ...++|.|+
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l-~~~L~~~g~~~vDgIL   94 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHL-KRHLAALGVERVDGIL   94 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGH-HHHHHHTTCSCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchH-HHHHHHcCCCCcCEEE
Confidence            4679999999999999999998  7899999999999999988 643   5899999999987 333321 235799987


Q ss_pred             E
Q 014711          309 I  309 (420)
Q Consensus       309 ~  309 (420)
                      +
T Consensus        95 ~   95 (285)
T 1wg8_A           95 A   95 (285)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.89  E-value=3.2e-05  Score=76.64  Aligned_cols=173  Identities=12%  Similarity=0.099  Sum_probs=108.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh----------------CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK----------------RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~----------------~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~  292 (420)
                      +..+|+|+||++|..++.+...                .|+.+|+.-|+-.......-+.+..... .+-.|+.+....+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3467999999999887655443                5788999999999988888777643211 1346777776665


Q ss_pred             hhhhhccCCCeEeEEEEeCCCCCCCCcchh----------------------hhhhH---HHHHHHHHhhccCCeEEEEE
Q 014711          293 FRSIVASYPGKLILVSIQCPNPDFNRPEHR----------------------WRMVQ---RSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       293 ~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k----------------------~Rl~~---~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ....|  +++++|.++.++.-.|..+....                      .+..+   ..||+..++.|+|||++++.
T Consensus       131 y~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          131 YGRLF--PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SSCCS--CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhccC--CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            44555  68999999999877775432100                      00011   46899999999999999997


Q ss_pred             eC---c-----------HHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCCCCCCCCCHHHHHHHHCCC-CeEEEE
Q 014711          348 SD---I-----------EEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGA-PMYRLM  412 (420)
Q Consensus       348 td---~-----------~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~~~~~~~T~~E~~~~~~G~-~i~~~~  412 (420)
                      +-   +           ......+++.+...|.-..+ .-|-         +..+.-+.-..+|.....+.|. .|.++.
T Consensus       209 ~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e-k~d~---------f~~P~y~ps~~E~~~~ie~~G~F~i~~~e  278 (359)
T 1m6e_X          209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEE-KMDK---------FNIPQYTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCS-TTGG---------GCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             EecCCCCCccccchHHHHHHHHHHHHHHHHccccchh-hhhc---------cCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence            51   1           11233444444555642111 1121         1122223445667777777765 887765


Q ss_pred             EE
Q 014711          413 LS  414 (420)
Q Consensus       413 ~~  414 (420)
                      ..
T Consensus       279 ~~  280 (359)
T 1m6e_X          279 AS  280 (359)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.89  E-value=1.5e-05  Score=75.56  Aligned_cols=124  Identities=12%  Similarity=0.065  Sum_probs=74.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||.|.++...+++.+...+.|+|++.++....... ...+. |+..++.++...   .+  .+..+|.|..
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv~---~l--~~~~~DlVls  146 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDIH---RL--EPVKCDTLLC  146 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCTT---TS--CCCCCSEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEeccceeh---hc--CCCCccEEEe
Confidence            35689999999999999999887777889999985531100000 00111 545556665322   12  4678999987


Q ss_pred             eCCCCCCCCcchhhh-hhHHHHHHHHHhhccCC-eEEEEEeCc---HHHHHHHHHHHHHc
Q 014711          310 QCPNPDFNRPEHRWR-MVQRSLVEAVSDLLVHD-GKVFLQSDI---EEVMLRMKQQFLEY  364 (420)
Q Consensus       310 ~fpdp~~k~~~~k~R-l~~~~~l~~i~~~Lkpg-G~l~~~td~---~~~~~~~~~~l~~~  364 (420)
                      ... |  ...++... .-+-.+|+.+.++|+|| |.|++..=.   +. ..+.++.|+.+
T Consensus       147 D~a-p--nsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~-~~~l~~~lk~~  202 (277)
T 3evf_A          147 DIG-E--SSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPD-VLEKLELLQRR  202 (277)
T ss_dssp             CCC-C--CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHH-HHHHHHHHHHH
T ss_pred             cCc-c--CcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcc-HHHHHHHHHHh
Confidence            532 1  12222111 11124588999999999 999998633   33 33345555543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.79  E-value=0.00019  Score=69.27  Aligned_cols=129  Identities=12%  Similarity=0.019  Sum_probs=82.1

Q ss_pred             CCEEEEEcCCccHHHHHHH----HhCCCC--eEEEEeCCh--------HHH-HHHHHHhHH---hCCC--cEEEEEcChh
Q 014711          231 QPLVVDIGSGNGLFLLGMA----RKRKDL--NFLGLEVNG--------KLV-THCRDSLQL---SGIT--NGYFIATNAT  290 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA----~~~P~~--~viGiDis~--------~~i-~~A~~~~~~---~~l~--nv~~~~~Da~  290 (420)
                      .-+|||+|+|+|...+...    +..|+.  +++.+|..+        ... +..+.....   ..-.  .+.+..+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            4679999999998654322    336664  578888532        111 112111111   1112  3678999999


Q ss_pred             hhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          291 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       291 ~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +.++.+   ....+|.+|+   |+....+.+  .+=++++++.++++++|||+|.-.|-    ...+++.|.+.||.+..
T Consensus       177 ~~l~~l---~~~~~Da~fl---DgFsP~kNP--eLWs~e~f~~l~~~~~pgg~laTYta----ag~VRR~L~~aGF~V~k  244 (308)
T 3vyw_A          177 KRIKEV---ENFKADAVFH---DAFSPYKNP--ELWTLDFLSLIKERIDEKGYWVSYSS----SLSVRKSLLTLGFKVGS  244 (308)
T ss_dssp             HHGGGC---CSCCEEEEEE---CCSCTTTSG--GGGSHHHHHHHHTTEEEEEEEEESCC----CHHHHHHHHHTTCEEEE
T ss_pred             HHHhhh---cccceeEEEe---CCCCcccCc--ccCCHHHHHHHHHHhCCCcEEEEEeC----cHHHHHHHHHCCCEEEe
Confidence            886543   2457999987   443222222  24457999999999999999875442    34588899999998654


Q ss_pred             e
Q 014711          371 L  371 (420)
Q Consensus       371 ~  371 (420)
                      +
T Consensus       245 ~  245 (308)
T 3vyw_A          245 S  245 (308)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.70  E-value=3e-05  Score=73.70  Aligned_cols=124  Identities=9%  Similarity=-0.031  Sum_probs=74.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||+|||.|.++...+++.+...++|+|++.++...+... ...+ .|+..++.++...   .+  ....+|.|.+
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g-~~ii~~~~~~dv~---~l--~~~~~DvVLS  162 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG-WNLIRFKDKTDVF---NM--EVIPGDTLLC  162 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT-GGGEEEECSCCGG---GS--CCCCCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC-CceEEeeCCcchh---hc--CCCCcCEEEe
Confidence            35689999999999999999888888899999987642222110 0112 2333334332211   12  4678999977


Q ss_pred             eCCCCCCCCcchhh-hhhHHHHHHHHHhhccCC--eEEEEEeCc---HHHHHHHHHHHHHc
Q 014711          310 QCPNPDFNRPEHRW-RMVQRSLVEAVSDLLVHD--GKVFLQSDI---EEVMLRMKQQFLEY  364 (420)
Q Consensus       310 ~fpdp~~k~~~~k~-Rl~~~~~l~~i~~~Lkpg--G~l~~~td~---~~~~~~~~~~l~~~  364 (420)
                      ..   -|...++.. ..-+-.+|+.+.++|+||  |.|++..=.   +.+ .+.++.|+.+
T Consensus       163 Dm---ApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~-~~l~~~lk~~  219 (282)
T 3gcz_A          163 DI---GESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLI-MEELSRLQLK  219 (282)
T ss_dssp             CC---CCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHH-HHHHHHHHHH
T ss_pred             cC---ccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccH-HHHHHHHHHh
Confidence            42   222222211 111124588889999999  999998633   333 3445555543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.48  E-value=0.00019  Score=69.08  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=42.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  278 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~  278 (420)
                      .+.+|||++||+|..++.+++.  +.+++|+|+++.+++.|++++.+..
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            5789999999999999998887  6799999999999999999987653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.48  E-value=0.00042  Score=72.22  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=88.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC-------------CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-hhh
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR-------------KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-RSI  296 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~-------------P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-~~~  296 (420)
                      +.+|+|-+||+|.|++...+..             ...+++|+|+++.+...|+-++.-+|..+-.+.++|..... .+.
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~  297 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREM  297 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGC
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhh
Confidence            5689999999999998876531             13579999999999999999988888877778888876531 111


Q ss_pred             hccCCCeEeEEEEeCCCCCCCCcch--hhh--------hhHHHHHHHHHhhcc-------CCeEEEEEeCcHHH-----H
Q 014711          297 VASYPGKLILVSIQCPNPDFNRPEH--RWR--------MVQRSLVEAVSDLLV-------HDGKVFLQSDIEEV-----M  354 (420)
Q Consensus       297 ~~~~~~~~d~i~~~fpdp~~k~~~~--k~R--------l~~~~~l~~i~~~Lk-------pgG~l~~~td~~~~-----~  354 (420)
                      .  ....||.|..|  .|+-.....  ..+        -.+-.|+..+.+.||       |||++.+.+.+-.+     .
T Consensus       298 ~--~~~~fD~Il~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~  373 (530)
T 3ufb_A          298 G--DKDRVDVILTN--PPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGIS  373 (530)
T ss_dssp             C--GGGCBSEEEEC--CCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHH
T ss_pred             c--ccccceEEEec--CCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchH
Confidence            1  23579999998  454221110  001        112467888888887       69999887643222     2


Q ss_pred             HHHHHHHHHc
Q 014711          355 LRMKQQFLEY  364 (420)
Q Consensus       355 ~~~~~~l~~~  364 (420)
                      ..+++.+-+.
T Consensus       374 ~~iRk~Lle~  383 (530)
T 3ufb_A          374 ARIKEELLKN  383 (530)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            3466655544

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.41  E-value=0.0002  Score=68.41  Aligned_cols=123  Identities=11%  Similarity=0.021  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++..|||+||++|.++..++++.+-..++|+|+...+...... ....+..-+.+... |+..+       ....+|.|.
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~~l-------~~~~~DlVl  152 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVFTM-------PTEPSDTLL  152 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTTTS-------CCCCCSEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCCceEEeecCceeeec-------CCCCcCEEe
Confidence            4789999999999999999987777789999998643110000 00011111333322 32221       356899997


Q ss_pred             EeCCCCCCCCcchhh-hhhHHHHHHHHHhhccCC-eEEEEEeC---cHHHHHHHHHHHHHc
Q 014711          309 IQCPNPDFNRPEHRW-RMVQRSLVEAVSDLLVHD-GKVFLQSD---IEEVMLRMKQQFLEY  364 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~-Rl~~~~~l~~i~~~Lkpg-G~l~~~td---~~~~~~~~~~~l~~~  364 (420)
                      ...   -|...++.. ...+-.+|..+.++|+|| |.|++..=   .+.+ ...++.|+.+
T Consensus       153 sD~---APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~-~~ll~~lk~~  209 (300)
T 3eld_A          153 CDI---GESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDV-IEKLERLQLR  209 (300)
T ss_dssp             ECC---CCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHH-HHHHHHHHHH
T ss_pred             ecC---cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccH-HHHHHHHHHh
Confidence            742   222222211 111235688889999999 99999862   3332 3345555543

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.21  E-value=0.00068  Score=64.62  Aligned_cols=109  Identities=15%  Similarity=0.091  Sum_probs=70.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +..|||+||++|.++...+.+..-..|+|+|+-..--+.= ...+..+.+.|.|.+. |+..+       .+..+|.|.+
T Consensus        95 ~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l-------~~~~~D~ivc  166 (321)
T 3lkz_A           95 VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYR-------PSECCDTLLC  166 (321)
T ss_dssp             CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSS-------CCCCCSEEEE
T ss_pred             CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhC-------CCCCCCEEEE
Confidence            5699999999999999888887666899999986511000 0001223345889887 88665       3466899887


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~td  349 (420)
                      .--..-+...-...|-+  ..|+.+.++|++| |.|++..=
T Consensus       167 DigeSs~~~~ve~~Rtl--~vLel~~~wL~~~~~~f~~KVl  205 (321)
T 3lkz_A          167 DIGESSSSAEVEEHRTI--RVLEMVEDWLHRGPREFCVKVL  205 (321)
T ss_dssp             CCCCCCSCHHHHHHHHH--HHHHHHHHHHTTCCCEEEEEES
T ss_pred             ECccCCCChhhhhhHHH--HHHHHHHHHhccCCCcEEEEEc
Confidence            53211100000111211  4788889999999 99999863

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.19  E-value=0.0013  Score=70.60  Aligned_cols=131  Identities=11%  Similarity=0.084  Sum_probs=85.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC-------CC-----CeEEEEeC---ChHHHHHHHH-----------HhHHh-----C-
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR-------KD-----LNFLGLEV---NGKLVTHCRD-----------SLQLS-----G-  278 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~-------P~-----~~viGiDi---s~~~i~~A~~-----------~~~~~-----~-  278 (420)
                      .-+|+|+|+|+|...+.+.+.+       |+     .+|+.+|.   +.+-+..|.+           .+..+     | 
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            4689999999999988776542       33     67999999   4444444322           11111     1 


Q ss_pred             ----C----CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          279 ----I----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       279 ----l----~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                          +    -.++++.+|+.+.++.+.......+|.+|+.   +....+.+  .+-+.+++..+.++++|||++.-.+-.
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD---~f~p~~np--~~w~~~~~~~l~~~~~~g~~~~t~~~~  213 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLD---GFAPAKNP--DMWNEQLFNAMARMTRPGGTFSTFTAA  213 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEEC---SSCC--CC--TTCSHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEEC---CCCCCCCh--hhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence                1    1478999999988754311114679999873   32111111  133468999999999999998765532


Q ss_pred             HHHHHHHHHHHHHcCCceeE
Q 014711          351 EEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       351 ~~~~~~~~~~l~~~g~~~~~  370 (420)
                          ..+++.+.+.|+....
T Consensus       214 ----~~vr~~l~~aGf~~~~  229 (689)
T 3pvc_A          214 ----GFVRRGLQQAGFNVTK  229 (689)
T ss_dssp             ----HHHHHHHHHTTCEEEE
T ss_pred             ----HHHHHHHHhCCeEEEe
Confidence                3578888899987543

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.14  E-value=0.00032  Score=64.89  Aligned_cols=107  Identities=15%  Similarity=0.146  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||+||++|.++...+.+.....|+|+|+-..--+.= ...+..|...++|.++ |...+       ++.++|.|.
T Consensus        78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~-------~~~~~Dtll  149 (267)
T 3p8z_A           78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYL-------PPEKCDTLL  149 (267)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGC-------CCCCCSEEE
T ss_pred             CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeec-------CCccccEEE
Confidence            35699999999999999888887777899999986432100 0012346677999999 98655       356799998


Q ss_pred             EeCCCCCCCCcc-hhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPE-HRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~-~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +.--..- ..+. ...|-+  ..|+.+.++|++ |.|++..
T Consensus       150 cDIgeSs-~~~~vE~~Rtl--rvLela~~wL~~-~~fc~KV  186 (267)
T 3p8z_A          150 CDIGESS-PSPTVEESRTI--RVLKMVEPWLKN-NQFCIKV  186 (267)
T ss_dssp             ECCCCCC-SCHHHHHHHHH--HHHHHHGGGCSS-CEEEEEE
T ss_pred             EecCCCC-CChhhhhhHHH--HHHHHHHHhccc-CCEEEEE
Confidence            7531111 1110 111222  478888999999 7888875

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.12  E-value=0.0014  Score=63.98  Aligned_cols=76  Identities=12%  Similarity=0.101  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccC--CCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY--PGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~--~~~~d~  306 (420)
                      ++.++||..||.|..+..++++ .|+.+++|+|.++.+++.|+ ++   .-.++++++++..++ ..++...  .+++|.
T Consensus        57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l-~~~L~~~g~~~~vDg  131 (347)
T 3tka_A           57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSAL-GEYVAERDLIGKIDG  131 (347)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGH-HHHHHHTTCTTCEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHH-HHHHHhcCCCCcccE
Confidence            4789999999999999999988 58899999999999999884 43   236899999999887 3333211  236999


Q ss_pred             EEEe
Q 014711          307 VSIQ  310 (420)
Q Consensus       307 i~~~  310 (420)
                      |++.
T Consensus       132 ILfD  135 (347)
T 3tka_A          132 ILLD  135 (347)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9765

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.06  E-value=0.0032  Score=67.26  Aligned_cols=130  Identities=14%  Similarity=0.082  Sum_probs=86.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHh-------CCC-----CeEEEEeC---ChHHHHHHHHH-----------hHHh-----C-
Q 014711          231 QPLVVDIGSGNGLFLLGMARK-------RKD-----LNFLGLEV---NGKLVTHCRDS-----------LQLS-----G-  278 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~-------~P~-----~~viGiDi---s~~~i~~A~~~-----------~~~~-----~-  278 (420)
                      ..+|+|+|+|+|...+...+.       +|+     .+|+++|.   +.+.+..+.+.           ...+     + 
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            468999999999987766443       233     46999999   77777644331           1111     1 


Q ss_pred             --------CCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          279 --------ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       279 --------l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                              --.+++..+|+.+.++.+-......+|.+|+   |+....+.+  .+-+.+++..++++++|||++.-.+-.
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~---D~f~p~~np--~~w~~~~~~~l~~~~~~g~~~~t~~~~  221 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFL---DGFAPAKNP--DMWTQNLFNAMARLARPGGTLATFTSA  221 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEE---CCSCGGGCG--GGSCHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEE---CCCCCcCCh--hhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence                    1236788899998876431112467999987   443111111  244579999999999999998865533


Q ss_pred             HHHHHHHHHHHHHcCCcee
Q 014711          351 EEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       351 ~~~~~~~~~~l~~~g~~~~  369 (420)
                          ..+++.+.+.|+...
T Consensus       222 ----~~vr~~L~~aGf~v~  236 (676)
T 3ps9_A          222 ----GFVRRGLQDAGFTMQ  236 (676)
T ss_dssp             ----HHHHHHHHHHTCEEE
T ss_pred             ----HHHHHHHHhCCeEEE
Confidence                357778888888654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.90  E-value=0.0016  Score=60.98  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH--hCCCcEEEEEc-ChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL--SGITNGYFIAT-NATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~--~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~  306 (420)
                      .+..|||+||+.|.++...++..+-..+.|.++..+. . . .-...  .|..=++|.++ |..++       .+..+|.
T Consensus        73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~-~P~~~~~~Gv~~i~~~~G~Df~~~-------~~~~~Dv  142 (269)
T 2px2_A           73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-E-EPMLMQSYGWNIVTMKSGVDVFYK-------PSEISDT  142 (269)
T ss_dssp             CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-C-CCCCCCSTTGGGEEEECSCCGGGS-------CCCCCSE
T ss_pred             CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-c-CCCcccCCCceEEEeeccCCccCC-------CCCCCCE
Confidence            4789999999999999998886222233444444331 0 0 00000  12112466667 98774       3567999


Q ss_pred             EEEeCCCCCCCCcchhh---hhhHHHHHHHHHhhccCCe-EEEEEe
Q 014711          307 VSIQCPNPDFNRPEHRW---RMVQRSLVEAVSDLLVHDG-KVFLQS  348 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~---Rl~~~~~l~~i~~~LkpgG-~l~~~t  348 (420)
                      |.+..   -|...++..   |.+.  .|+.+.++|+||| .|++..
T Consensus       143 VLSDM---APnSG~~~vD~~Rs~~--aL~~A~~~Lk~gG~~FvvKV  183 (269)
T 2px2_A          143 LLCDI---GESSPSAEIEEQRTLR--ILEMVSDWLSRGPKEFCIKI  183 (269)
T ss_dssp             EEECC---CCCCSCHHHHHHHHHH--HHHHHHHHHTTCCSEEEEEE
T ss_pred             EEeCC---CCCCCccHHHHHHHHH--HHHHHHHHhhcCCcEEEEEE
Confidence            97742   222332211   2222  6777889999999 898886

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.77  E-value=0.0079  Score=59.45  Aligned_cols=68  Identities=9%  Similarity=0.103  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.++||+||.+|.++..++++  ...|+|||+.+-. .    .+  ....+|.++++|+..+.+     ....+|.|++
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-~----~l--~~~~~V~~~~~d~~~~~~-----~~~~~D~vvs  276 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-Q----SL--MDTGQVTWLREDGFKFRP-----TRSNISWMVC  276 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-H----HH--HTTTCEEEECSCTTTCCC-----CSSCEEEEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-h----hh--ccCCCeEEEeCccccccC-----CCCCcCEEEE
Confidence            4789999999999999999988  6899999987421 1    11  234689999999987621     3567999987


Q ss_pred             eC
Q 014711          310 QC  311 (420)
Q Consensus       310 ~f  311 (420)
                      ..
T Consensus       277 Dm  278 (375)
T 4auk_A          277 DM  278 (375)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.72  E-value=0.0027  Score=62.59  Aligned_cols=59  Identities=14%  Similarity=0.018  Sum_probs=51.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  292 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~  292 (420)
                      +..|||||.|.|.+|..|++.....+++++|+++..+...++.. .  ..|++++++|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCccch
Confidence            57899999999999999998744467999999999998888776 2  46899999999776

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.57  E-value=0.0027  Score=59.73  Aligned_cols=47  Identities=23%  Similarity=0.299  Sum_probs=41.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  278 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~  278 (420)
                      ++.+|||..||+|..+++..+.  +.+++|+|+++.+++.|++++...+
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            5789999999999999998877  6899999999999999999987544

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.41  E-value=0.01  Score=56.43  Aligned_cols=123  Identities=14%  Similarity=0.133  Sum_probs=87.7

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +..+||+=+|||.+++++.+.  ..+++.+|.++..++..++|+..  ..++++++.|+...+....+ +...+|.|++ 
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~-~~~~fdLVfi-  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLP-PPEKRGLIFI-  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCS-CTTSCEEEEE-
T ss_pred             CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcC-CCCCccEEEE-
Confidence            455899999999999998873  57999999999999999988864  35799999999887654443 3456999977 


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHh--hccCCeEEEEEeC--cHHHHHHHHHHHHHcCC
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD--IEEVMLRMKQQFLEYGK  366 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~--~LkpgG~l~~~td--~~~~~~~~~~~l~~~g~  366 (420)
                        ||-.....     ...+.++.+.+  .+.|+|.+.+--.  .....+.+.+.+++.+.
T Consensus       166 --DPPYe~k~-----~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~  218 (283)
T 2oo3_A          166 --DPSYERKE-----EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS  218 (283)
T ss_dssp             --CCCCCSTT-----HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred             --CCCCCCCc-----HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence              56333211     11244544444  5679999988632  23335567777776665

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.30  E-value=0.013  Score=55.11  Aligned_cols=106  Identities=12%  Similarity=0.151  Sum_probs=72.4

Q ss_pred             CCEEEEEcCCccHHHHHHHHh-------CCCCeEEEEeCC-----h----------------------HHHHHHH---HH
Q 014711          231 QPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLEVN-----G----------------------KLVTHCR---DS  273 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~-------~P~~~viGiDis-----~----------------------~~i~~A~---~~  273 (420)
                      ...++|+||-.|..+..+|+.       +++.+++|+|.-     +                      +.++...   ++
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            467999999999999987753       478999999921     1                      1122111   11


Q ss_pred             hHHhCC--CcEEEEEcChhhhhhhhhcc-CCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          274 LQLSGI--TNGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       274 ~~~~~l--~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      ....+.  +|+.++.+++.+.++.++.. +...+|.+++-. |-     ..    -....++.+...|+|||.+++
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D~-----Y~----~t~~~le~~~p~l~~GGvIv~  215 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-DL-----YE----PTKAVLEAIRPYLTKGSIVAF  215 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-CC-----HH----HHHHHHHHHGGGEEEEEEEEE
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-cc-----cc----hHHHHHHHHHHHhCCCcEEEE
Confidence            122343  68999999999987765432 345799998853 21     00    113678889999999999998

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.19  E-value=0.021  Score=55.94  Aligned_cols=129  Identities=10%  Similarity=0.036  Sum_probs=79.8

Q ss_pred             CEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          232 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      .+++|+.||.|.+.+.+.+..- -..++++|+++.+++..+.|..     +..++++|+.++....++  ...+|.++..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~--~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFD--RLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHH--HHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcC--cCCcCEEEEc
Confidence            5799999999999999988732 1369999999999999988753     345788999887433231  2258999887


Q ss_pred             CC-CCCCCCcchh-----h-hhhHHHHHHHHHhhcc--CCeEEEEE-eC---cHHHHHHHHHHHHHcCCceeE
Q 014711          311 CP-NPDFNRPEHR-----W-RMVQRSLVEAVSDLLV--HDGKVFLQ-SD---IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       311 fp-dp~~k~~~~k-----~-Rl~~~~~l~~i~~~Lk--pgG~l~~~-td---~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +| .++......+     | .++ .++++ +.+.++  |-- |+++ ..   ....++.+++.|++.|+...+
T Consensus        76 pPCq~fS~ag~~~g~~d~r~~l~-~~~~~-~i~~~~~~P~~-~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~  145 (343)
T 1g55_A           76 PPCQPFTRIGRQGDMTDSRTNSF-LHILD-ILPRLQKLPKY-ILLENVKGFEVSSTRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             CC------------------CHH-HHHHH-HGGGCSSCCSE-EEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCcchhhcCCcCCccCccchHH-HHHHH-HHHHhcCCCCE-EEEeCCccccCHHHHHHHHHHHHHCCCeeEE
Confidence            65 2222211111     1 121 23433 444566  654 4443 11   124567788899998876543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.14  E-value=0.024  Score=54.02  Aligned_cols=100  Identities=11%  Similarity=0.095  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcC------CccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCC
Q 014711          229 PAQPLVVDIGS------GNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP  301 (420)
Q Consensus       229 ~~~~~vLDIGc------G~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~  301 (420)
                      |.+.+|||+|+      -.|.+  .+.+..|+ ..++++|+.+-..           ..+ .++++|.....      ..
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~~------~~  167 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATVH------TA  167 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGEE------ES
T ss_pred             cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CCC-eEEEccccccc------cC
Confidence            45889999995      66773  44555787 6999999997421           123 55999976541      25


Q ss_pred             CeEeEEEEeCCCCCCCCcchhh-hh--hHHHHHHHHHhhccCCeEEEEEe
Q 014711          302 GKLILVSIQCPNPDFNRPEHRW-RM--VQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~k~~~~k~-Rl--~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ..+|.|..-..++-.......+ |.  +-+..++-+.+.|+|||.|++..
T Consensus       168 ~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV  217 (344)
T 3r24_A          168 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  217 (344)
T ss_dssp             SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence            7899998754333222211111 11  23567788899999999999985

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.94  E-value=0.076  Score=52.67  Aligned_cols=127  Identities=12%  Similarity=0.034  Sum_probs=81.0

Q ss_pred             CEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc---cCCCeEeEE
Q 014711          232 PLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA---SYPGKLILV  307 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~---~~~~~~d~i  307 (420)
                      ..++|+-||.|.+...+.+.  +. .+.++|+++.+++..+.|.     ++..++++|+.++....+.   .....+|.|
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence            46899999999999999887  34 4679999999998887764     4567889999886432220   024579999


Q ss_pred             EEeCCC-CCCCCc-----chhhhhhHHHHHHHHHhhccCCeEEE------EEeCcHHHHHHHHHHHHHcCCce
Q 014711          308 SIQCPN-PDFNRP-----EHRWRMVQRSLVEAVSDLLVHDGKVF------LQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       308 ~~~fpd-p~~k~~-----~~k~Rl~~~~~l~~i~~~LkpgG~l~------~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      +..+|= ++....     +.+..++ ..+++ +.+.++|.-.++      +..+...+++.++ .|++.|+..
T Consensus        76 ~ggpPCQ~fS~ag~~~~~d~r~~L~-~~~~~-~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           76 IGGPPCQGFSSIGKGNPDDSRNQLY-MHFYR-LVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             EECCCCCTTC-------CHHHHHHH-HHHHH-HHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred             EecCCCCCcccccCCCCCCchHHHH-HHHHH-HHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence            887552 222111     1111222 34444 344568865443      1123455677788 899888765

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.86  E-value=0.027  Score=53.82  Aligned_cols=86  Identities=14%  Similarity=0.119  Sum_probs=56.4

Q ss_pred             CCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchh------h---h---hh--HHHHHHHHHhhccCCeEE
Q 014711          279 ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR------W---R---MV--QRSLVEAVSDLLVHDGKV  344 (420)
Q Consensus       279 l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k------~---R---l~--~~~~l~~i~~~LkpgG~l  344 (420)
                      +.+++++++|+.+.+.. +  ++++||.|+.+  .|+.......      .   +   .+  ..++++++.++|||||.+
T Consensus        19 ~~~~~i~~gD~~~~l~~-l--~~~s~DlIvtd--PPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l   93 (297)
T 2zig_A           19 FGVHRLHVGDAREVLAS-F--PEASVHLVVTS--PPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRL   93 (297)
T ss_dssp             --CEEEEESCHHHHHTT-S--CTTCEEEEEEC--CCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCCEEEECcHHHHHhh-C--CCCceeEEEEC--CCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence            45789999999987532 3  46899999887  5554321100      0   0   11  135778999999999999


Q ss_pred             EEEeCcH-------------HHHHHHHHHHHHcCCcee
Q 014711          345 FLQSDIE-------------EVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       345 ~~~td~~-------------~~~~~~~~~l~~~g~~~~  369 (420)
                      ++.+++.             .+...+.+.+.+.||...
T Consensus        94 ~i~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~  131 (297)
T 2zig_A           94 VIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNL  131 (297)
T ss_dssp             EEEECCEEEECC----EEEECHHHHHHHHHHHTTCEEE
T ss_pred             EEEECCCccccccCCcccccccHHHHHHHHHHcCCeee
Confidence            9987632             133457778888887643

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.74  E-value=0.028  Score=56.38  Aligned_cols=61  Identities=15%  Similarity=0.121  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCccHHHHHHH-HhCCC-CeEEEEeCChHHHHHHHHHhHH---hCC-CcEEEEEcChh
Q 014711          230 AQPLVVDIGSGNGLFLLGMA-RKRKD-LNFLGLEVNGKLVTHCRDSLQL---SGI-TNGYFIATNAT  290 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA-~~~P~-~~viGiDis~~~i~~A~~~~~~---~~l-~nv~~~~~Da~  290 (420)
                      ++.+++|||++.|.++..++ +..+. .+|+++|.++...+..++++..   ++. +|+++++.-+-
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            57899999999999999988 56665 7999999999999999999987   346 78888775543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.47  E-value=0.056  Score=52.36  Aligned_cols=85  Identities=16%  Similarity=0.074  Sum_probs=57.0

Q ss_pred             CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcc--------hhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          280 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE--------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       280 ~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~--------~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      .+.+++++|+.+.+.. +  +++++|+|++.  .|+.....        ..--..-.+.+.++.++|+|||.+++.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~-l--~~~svDlI~tD--PPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           13 SNGSMYIGDSLELLES-F--PEESISLVMTS--PPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SSEEEEESCHHHHGGG-S--CSSCEEEEEEC--CCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCceEEeCcHHHHHhh-C--CCCCeeEEEEC--CCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            4588999999887542 3  47899999885  44432210        0000112478889999999999999987753


Q ss_pred             ----------HHHHHHHHHHHHcCCcee
Q 014711          352 ----------EVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       352 ----------~~~~~~~~~l~~~g~~~~  369 (420)
                                .....+.+.++..||...
T Consensus        88 ~~~g~~~~~~~~~~~i~~~~~~~Gf~~~  115 (323)
T 1boo_A           88 YMKGVPARSIYNFRVLIRMIDEVGFFLA  115 (323)
T ss_dssp             EETTEEEECCHHHHHHHHHHHTTCCEEE
T ss_pred             ecCCCcccccchHHHHHHHHHhCCCEEE
Confidence                      134556677788887543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.44  E-value=0.21  Score=48.40  Aligned_cols=125  Identities=12%  Similarity=0.010  Sum_probs=81.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ...++|+.||.|.+...+.+.. -..+.++|+++.+++..+.|....     .  ++|+.++....+    ..+|.++..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~~~-----~--~~Di~~~~~~~~----~~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEK-----P--EGDITQVNEKTI----PDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSCC-----C--BSCGGGSCGGGS----CCCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcCCC-----C--cCCHHHcCHhhC----CCCCEEEEC
Confidence            4789999999999999988762 235888999999999888876321     1  688888743323    248999888


Q ss_pred             CCCC-CCCCcc------hhhhhhHHHHHHHHHhhccCCeEEEEEe-------CcHHHHHHHHHHHHHcCCceeE
Q 014711          311 CPNP-DFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       311 fpdp-~~k~~~------~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-------d~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +|=. +.....      .+..|+ .++++.+ +.++|. .|+++-       +....++.+++.|++.|+...+
T Consensus        79 pPCQ~fS~ag~~~g~~d~r~~L~-~~~~r~i-~~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~  149 (327)
T 2c7p_A           79 FPCQAFSISGKQKGFEDSRGTLF-FDIARIV-REKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA  149 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCHH-HHHHHHH-HHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred             CCCCCcchhcccCCCcchhhHHH-HHHHHHH-HhccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEE
Confidence            6532 222111      111232 3555544 456885 445541       2234577888999999876543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.57  E-value=0.13  Score=48.07  Aligned_cols=81  Identities=15%  Similarity=0.065  Sum_probs=52.4

Q ss_pred             EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCC-cchh-----h--hhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          282 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PEHR-----W--RMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       282 v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~-~~~k-----~--Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      .+++++|+.+.+.. +  +++++|.|++.  .|+... ....     .  .-.....++++.++|+|||.+++.++... 
T Consensus         5 ~~l~~gD~~~~l~~-l--~~~~vdlI~~D--PPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~-   78 (260)
T 1g60_A            5 NKIHQMNCFDFLDQ-V--ENKSVQLAVID--PPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFN-   78 (260)
T ss_dssp             SSEEECCHHHHHHH-S--CTTCEEEEEEC--CCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHH-
T ss_pred             CeEEechHHHHHHh-c--cccccCEEEEC--CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHH-
Confidence            36789999887653 3  46799999885  444332 1100     0  01224778889999999999999865433 


Q ss_pred             HHHHHHHHHHcCCce
Q 014711          354 MLRMKQQFLEYGKGK  368 (420)
Q Consensus       354 ~~~~~~~l~~~g~~~  368 (420)
                      ...+...+.+.+|..
T Consensus        79 ~~~~~~~~~~~gf~~   93 (260)
T 1g60_A           79 CAFICQYLVSKGMIF   93 (260)
T ss_dssp             HHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHhhccce
Confidence            234555677777754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.37  E-value=0.35  Score=40.27  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=69.8

Q ss_pred             CEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeEEE
Q 014711          232 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS  308 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~i~  308 (420)
                      ..++=+|||.  ++..+|+.  .-+..|+++|.+++.++.+++    .   ++.++.+|+.+.  +.+. ..-...|.++
T Consensus         8 ~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~--~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            8 NHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRE----R---GVRAVLGNAANE--EIMQLAHLECAKWLI   76 (140)
T ss_dssp             SCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEESCTTSH--HHHHHTTGGGCSEEE
T ss_pred             CCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c---CCCEEECCCCCH--HHHHhcCcccCCEEE
Confidence            4577788754  44444443  236799999999998876653    2   357788998764  1111 0124678888


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      +..|++.          . ...+-...+.+.|+..++.....+.+.    +.|++.|...
T Consensus        77 ~~~~~~~----------~-n~~~~~~a~~~~~~~~iiar~~~~~~~----~~l~~~G~d~  121 (140)
T 3fwz_A           77 LTIPNGY----------E-AGEIVASARAKNPDIEIIARAHYDDEV----AYITERGANQ  121 (140)
T ss_dssp             ECCSCHH----------H-HHHHHHHHHHHCSSSEEEEEESSHHHH----HHHHHTTCSE
T ss_pred             EECCChH----------H-HHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHCCCCE
Confidence            7655542          1 123445667788999998888776653    4566677653

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.16  E-value=0.38  Score=46.65  Aligned_cols=130  Identities=12%  Similarity=0.052  Sum_probs=80.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC-CCCeE-EEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR-KDLNF-LGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~-P~~~v-iGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ..+++|+-||.|.+...+.+.. +-..+ .++|+++.+++.-+.|...     . ++++|+.++..+.++  ...+|.++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~--~~~~Dil~   81 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIE--SLNCNTWF   81 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHH--HTCCCEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhc--cCCCCEEE
Confidence            4689999999999999998773 22345 7999999999888877531     1 567888877443332  23689998


Q ss_pred             EeCCCCCC------CCc---chhhhhhHHHHHHHHHhhc--cCCeEEEEEe----CcHHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDF------NRP---EHRWRMVQRSLVEAVSDLL--VHDGKVFLQS----DIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~------k~~---~~k~Rl~~~~~l~~i~~~L--kpgG~l~~~t----d~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ..+|=.-+      +.+   +.+..++ .++++.+.+.+  +|- .|+++-    -....++.+++.|++.|+...+
T Consensus        82 ggpPCQ~fs~S~ag~~~~~~d~r~~L~-~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~  156 (327)
T 3qv2_A           82 MSPPCQPYNNSIMSKHKDINDPRAKSV-LHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYYIKD  156 (327)
T ss_dssp             ECCCCTTCSHHHHTTTCTTTCGGGHHH-HHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCEEEE
T ss_pred             ecCCccCcccccCCCCCCCccccchhH-HHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCEEEE
Confidence            87653323      111   1111221 13333233345  564 444542    0123567788899999886543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.54  E-value=0.22  Score=48.71  Aligned_cols=96  Identities=16%  Similarity=0.170  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE--cChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~--~Da~~~~~~~~~~~~~~~d~  306 (420)
                      .+..||-+|||. |..++.+|+..-...|+++|.+++.++.+++    .|...+ +-.  .|..+.+.+.   ..+.+|.
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~v-i~~~~~~~~~~~~~~---~~gg~D~  261 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGATHV-INSKTQDPVAAIKEI---TDGGVNF  261 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCSEE-EETTTSCHHHHHHHH---TTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCCEE-ecCCccCHHHHHHHh---cCCCCcE
Confidence            467899999987 8889999988633379999999998887754    344321 111  1222221222   1336898


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++-.-..              +..++...+.|+++|++.+.
T Consensus       262 vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          262 ALESTGS--------------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEECSCC--------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             EEECCCC--------------HHHHHHHHHHHhcCCEEEEe
Confidence            8654221              25778889999999999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.38  E-value=0.41  Score=46.52  Aligned_cols=98  Identities=12%  Similarity=0.108  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC---hhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN---ATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D---a~~~~~~~~~~~~~~~d  305 (420)
                      .+..||-+|+|. |..++.+|+.....+|+++|.+++.++.+++    .|...  .+..+   ..+............+|
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~~i~~~~~~g~D  244 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADL--VLQISKESPQEIARKVEGQLGCKPE  244 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSE--EEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCE--EEcCcccccchHHHHHHHHhCCCCC
Confidence            467899999986 8888999988643389999999988877653    45442  22222   12221111100124688


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-.-..              +..+....+.|+|+|++.+.
T Consensus       245 ~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          245 VTIECTGA--------------EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             EEEECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECCCC--------------hHHHHHHHHHhcCCCEEEEE
Confidence            88654221              25678888999999999874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.29  E-value=0.35  Score=46.71  Aligned_cols=98  Identities=14%  Similarity=0.199  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..||=+|+|. |..++.+|+.....+|+++|.+++.++.+++    .|...+--...|..+.+.+..  ....+|.++
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~v~~~t--~g~g~d~v~  244 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADAAVKSGAGAADAIRELT--GGQGATAVF  244 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSEEEECSTTHHHHHHHHH--GGGCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcCCCcHHHHHHHHh--CCCCCeEEE
Confidence            467888899976 8888999988767899999999998887754    454432111112222212221  133688886


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      -.-..              +..++...+.|+++|++.+.
T Consensus       245 d~~G~--------------~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          245 DFVGA--------------QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             ESSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             ECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            54222              25788899999999999874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.78  E-value=0.29  Score=48.45  Aligned_cols=108  Identities=13%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE---cCh-hhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNA-TSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~---~Da-~~~~~~~~~~~~~~~  304 (420)
                      .+..||-+|||. |.+++.+|+..-..+|+++|.+++.++.+++    .|. .  .+.   .|. .+.+.+..  ....+
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-~--~i~~~~~~~~~~~~~~~~--~g~g~  255 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF-E--TIDLRNSAPLRDQIDQIL--GKPEV  255 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC-E--EEETTSSSCHHHHHHHHH--SSSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-c--EEcCCCcchHHHHHHHHh--CCCCC
Confidence            467899999987 8899999998643389999999998877643    454 2  222   221 22222222  23368


Q ss_pred             eEEEEeCCCCCCCC-cchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          305 ILVSIQCPNPDFNR-PEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~-~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |.++-.-..+.... .... .+..+..+....+.|+++|++.+.
T Consensus       256 Dvvid~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          256 DCGVDAVGFEAHGLGDEAN-TETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             EEEEECSCTTCBCSGGGTT-SBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CEEEECCCCcccccccccc-ccccHHHHHHHHHHHhcCCEEEEe
Confidence            99865533321000 0000 000014678889999999998753

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.21  E-value=0.13  Score=49.71  Aligned_cols=60  Identities=20%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~  292 (420)
                      ++.+|||--||+|..+++..+.  +.+++|+|+++..++.+++++.+.+.. ...++.|+.++
T Consensus       252 ~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~i  311 (323)
T 1boo_A          252 PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNNIS-EEKITDIYNRI  311 (323)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSCSC-HHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhcccc-hHHHHHHHHHH
Confidence            5789999999999999887776  689999999999999999998765542 44455555554

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=92.15  E-value=0.37  Score=46.80  Aligned_cols=129  Identities=11%  Similarity=0.058  Sum_probs=80.0

Q ss_pred             CEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          232 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      .+++|+-||.|.+...+.+..- -..+.++|+++.+++.-+.|..     +..+++.|+.++....++  ...+|.++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~--~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIK--KWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHH--HTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhc--cCCCCEEEec
Confidence            4699999999999999887732 2457899999999888777642     334678899887443332  2358998887


Q ss_pred             CCC-CCCCCcc------hhhhhhHHHHHHHHHhhcc-CCeEEEEEe-C---cHHHHHHHHHHHHHcCCceeE
Q 014711          311 CPN-PDFNRPE------HRWRMVQRSLVEAVSDLLV-HDGKVFLQS-D---IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       311 fpd-p~~k~~~------~k~Rl~~~~~l~~i~~~Lk-pgG~l~~~t-d---~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      +|= |+.....      .+..++ .++++ +.+.++ |- .|+++- .   ....++.+.+.|++.|+...+
T Consensus        77 pPCQ~fS~ag~~~~~~d~r~~L~-~~~~r-~i~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~  145 (333)
T 4h0n_A           77 PPCQPFTRNGKYLDDNDPRTNSF-LYLIG-ILDQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQE  145 (333)
T ss_dssp             CCCCCSEETTEECCTTCTTSCCH-HHHHH-HGGGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCcchhhhhhccCCcCcccccH-HHHHH-HHHHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEE
Confidence            652 2211111      111222 24444 334454 74 444542 1   123467788899998876543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.79  E-value=0.45  Score=46.09  Aligned_cols=96  Identities=13%  Similarity=0.056  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE---cChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~---~Da~~~~~~~~~~~~~~~d  305 (420)
                      .+..||=+|+|. |..++.+|+..-..+|+++|.+++.++.+++    .|...  ++.   .|..+.+.+..  ....+|
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~v~~~t--~g~g~D  237 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGATD--IINYKNGDIVEQILKAT--DGKGVD  237 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCCE--EECGGGSCHHHHHHHHT--TTCCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCce--EEcCCCcCHHHHHHHHc--CCCCCC
Confidence            366788889986 8888888987643489999999988877755    34432  222   22222212221  234699


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-....|              ..+....+.|+|+|++.+.
T Consensus       238 ~v~d~~g~~--------------~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          238 KVVIAGGDV--------------HTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             EEEECSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCCh--------------HHHHHHHHHHhcCCEEEEe
Confidence            987653333              4678888999999998753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.53  E-value=1  Score=43.43  Aligned_cols=96  Identities=13%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccC---CC
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASY---PG  302 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~---~~  302 (420)
                      .+..||-+|+|. |..++.+|+.. ..+|+++|.+++.++.+++    .|...+ +-..   |..+.+.+..  .   ..
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~-~~~~~~~~~~~~i~~~~--~~~~g~  239 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGADVT-LVVDPAKEEESSIIERI--RSAIGD  239 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSEE-EECCTTTSCHHHHHHHH--HHHSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEE-EcCcccccHHHHHHHHh--ccccCC
Confidence            467888899876 78888888876 5679999999998877753    454422 2211   2211111111  1   24


Q ss_pred             eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .+|.++-.-..              +..++...+.|+++|++++.
T Consensus       240 g~D~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          240 LPNVTIDCSGN--------------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             CCSEEEECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCEEEECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            58888654221              24678888999999999874

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.41  E-value=0.53  Score=45.39  Aligned_cols=82  Identities=6%  Similarity=0.036  Sum_probs=51.8

Q ss_pred             EEEE-EcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCc-----chhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH--
Q 014711          282 GYFI-ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP-----EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV--  353 (420)
Q Consensus       282 v~~~-~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~-----~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~--  353 (420)
                      .+++ ++|+.+.+.. +  +++++|+|++.  .|+....     +..---.-...+.++.++|+|||.+++.+|+...  
T Consensus        39 ~~l~i~gD~l~~L~~-l--~~~svDlI~tD--PPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~  113 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAK-L--PDDSVQLIICD--PPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGE  113 (319)
T ss_dssp             EEEEEECCHHHHHHT-S--CTTCEEEEEEC--CCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCC
T ss_pred             ceEEECCcHHHHHHh-C--ccCCcCEEEEC--CCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccccc
Confidence            6777 9999987643 3  46799999885  4443221     0000001246778889999999999999876422  


Q ss_pred             -----HHHHHHHHHHcC-Cce
Q 014711          354 -----MLRMKQQFLEYG-KGK  368 (420)
Q Consensus       354 -----~~~~~~~l~~~g-~~~  368 (420)
                           ...+...+...| +..
T Consensus       114 ~~~~~l~~l~~~i~~~G~~~~  134 (319)
T 1eg2_A          114 AGSGDLISIISHMRQNSKMLL  134 (319)
T ss_dssp             TTBCCHHHHHHHHHHHCCCEE
T ss_pred             cccccHHHHHHHHhCccccee
Confidence                 134555555555 543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.37  E-value=0.23  Score=48.00  Aligned_cols=47  Identities=17%  Similarity=0.114  Sum_probs=39.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCCh---HHHHHHHHHhHHhC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNG---KLVTHCRDSLQLSG  278 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~---~~i~~A~~~~~~~~  278 (420)
                      ++.+|||-=||+|..+++..+.  +.+++|+|+++   ..++.+++++.+.+
T Consensus       242 ~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          242 PGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            5789999999999999998877  68999999999   99999999987654

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=91.08  E-value=1.2  Score=42.95  Aligned_cols=96  Identities=15%  Similarity=0.217  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcCh-hhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA-TSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da-~~~~~~~~~~~~~~~d~  306 (420)
                      .+..||-+|+|. |..++.+|+.. |+.+++++|.|++.++.+++    .|...+  +..+- .+.....-  ....+|.
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~v--i~~~~~~~~~~~~~--~g~g~D~  241 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADYV--SEMKDAESLINKLT--DGLGASI  241 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSEE--ECHHHHHHHHHHHH--TTCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCEE--eccccchHHHHHhh--cCCCccE
Confidence            367899999975 77888888874 57899999999998877754    354322  11111 11111211  2336898


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++-.-..              +..++...+.|+++|++.+.
T Consensus       242 vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          242 AIDLVGT--------------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             EEESSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCC--------------hHHHHHHHHHhhcCCEEEEe
Confidence            8664222              24778888999999998764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=90.98  E-value=0.7  Score=44.41  Aligned_cols=94  Identities=17%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE--cChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~--~Da~~~~~~~~~~~~~~~d~  306 (420)
                      .+..||-+|+|. |..++.+|+.. ..+|+++|.+++.++.+++    .|...+ +-.  .|..+.+.+ .   .+.+|.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~~-~---~g~~d~  235 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGAEVA-VNARDTDPAAWLQK-E---IGGAHG  235 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSEE-EETTTSCHHHHHHH-H---HSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCCCEE-EeCCCcCHHHHHHH-h---CCCCCE
Confidence            467788899986 89999999986 5699999999998887654    454321 211  122222111 1   236888


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++.....              ...++...+.|+|+|++.+.
T Consensus       236 vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          236 VLVTAVS--------------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             EEESSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEeCCC--------------HHHHHHHHHHhccCCEEEEe
Confidence            8654222              36788899999999998874

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=90.87  E-value=2.3  Score=41.19  Aligned_cols=126  Identities=13%  Similarity=0.140  Sum_probs=78.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC---------------------CCcEEEEEcC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---------------------ITNGYFIATN  288 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~---------------------l~nv~~~~~D  288 (420)
                      ....|+.+|||.......|...+|+..|+-+|. |+.++.-++.+.+.+                     ..+.+++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            357899999999999999998888889999998 888877777665541                     2579999999


Q ss_pred             hhhh--hhhhhcc-CC-CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE-EEeC-----cHHHHHHHH
Q 014711          289 ATST--FRSIVAS-YP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF-LQSD-----IEEVMLRMK  358 (420)
Q Consensus       289 a~~~--~~~~~~~-~~-~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~-~~td-----~~~~~~~~~  358 (420)
                      +.+.  +...+.. .+ .....+..-..-.+....      ...++++.+.+.. |+|.++ +..-     ...+...|.
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~------~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~  248 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNN------ESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQ  248 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH------HHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH------HHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHH
Confidence            9874  1111111 12 223334333322222111      1146777787776 677664 4321     224555566


Q ss_pred             HHHHH
Q 014711          359 QQFLE  363 (420)
Q Consensus       359 ~~l~~  363 (420)
                      ..+.+
T Consensus       249 ~~l~~  253 (334)
T 1rjd_A          249 SNLKE  253 (334)
T ss_dssp             HHHHH
T ss_pred             HHhhc
Confidence            66665

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=90.59  E-value=0.89  Score=44.76  Aligned_cols=107  Identities=12%  Similarity=0.096  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc--C-hhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT--N-ATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~--D-a~~~~~~~~~~~~~~~d  305 (420)
                      .+..||-+|||. |.+++.+|+..-...|+++|.+++.++.+++    .|..  .+...  | ..+.+.+..  ....+|
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--~i~~~~~~~~~~~v~~~t--~g~g~D  256 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFE--IADLSLDTPLHEQIAALL--GEPEVD  256 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCE--EEETTSSSCHHHHHHHHH--SSSCEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCCc--EEccCCcchHHHHHHHHh--CCCCCC
Confidence            467888899977 8889999998644479999999998887754    4542  12111  1 122112222  234689


Q ss_pred             EEEEeCCCCCCC-C---cchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFN-R---PEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k-~---~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-.-..+... .   -|+.   -.+..+....+.|++||++.+.
T Consensus       257 vvid~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          257 CAVDAVGFEARGHGHEGAKHE---APATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             EEEECCCTTCBCSSTTGGGSB---CTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCCccccccccccccc---chHHHHHHHHHHHhcCCEEEEe
Confidence            886543322100 0   0000   0124678889999999998763

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.56  E-value=0.72  Score=44.52  Aligned_cols=88  Identities=17%  Similarity=0.141  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..||=+|+|. |..++.+|+.. ..+|+++|.+++.++.+++    .|...+-   .|...+        ...+|.++
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v~---~~~~~~--------~~~~D~vi  239 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS----MGVKHFY---TDPKQC--------KEELDFII  239 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH----TTCSEEE---SSGGGC--------CSCEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh----cCCCeec---CCHHHH--------hcCCCEEE
Confidence            467888899986 88888899876 5699999999988877644    5544332   333222        22688887


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      -....+              ..+....+.|+|+|++.+.
T Consensus       240 d~~g~~--------------~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          240 STIPTH--------------YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             ECCCSC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred             ECCCcH--------------HHHHHHHHHHhcCCEEEEE
Confidence            553333              2456778899999998875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.04  E-value=1.2  Score=43.34  Aligned_cols=96  Identities=11%  Similarity=0.108  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc----ChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~----Da~~~~~~~~~~~~~~~  304 (420)
                      .+..||-+|+|. |..++.+|+..-..+|+++|.+++.++.+++    .|...+ +-..    |..+.+.+..   .+.+
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~v-i~~~~~~~~~~~~~~~~~---~~g~  263 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGATDF-VNPNDHSEPISQVLSKMT---NGGV  263 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCCEE-ECGGGCSSCHHHHHHHHH---TSCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCceE-EeccccchhHHHHHHHHh---CCCC
Confidence            467888899876 7888889988643389999999998887753    454322 1111    1222222221   2368


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~  347 (420)
                      |.++-.-..              +..+....+.|+++ |++++.
T Consensus       264 D~vid~~g~--------------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          264 DFSLECVGN--------------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             SEEEECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCC--------------HHHHHHHHHHhhcCCcEEEEE
Confidence            888654221              25778889999999 998764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=89.92  E-value=0.98  Score=44.13  Aligned_cols=100  Identities=19%  Similarity=0.161  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEE-EEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~-~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+..||=+|+|. |..++.+|+..-...|+++|.+++..+.+++    .|...+. ....|..+.+.+......+.+|.+
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvv  257 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLVPGGVDVV  257 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSSTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhccCCCCCEE
Confidence            467788899976 8888889988644489999999998877755    4543211 111222222221000113478988


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +-....              ...++...+.|++||++.+.
T Consensus       258 id~~G~--------------~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          258 IECAGV--------------AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             EECSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCCC--------------HHHHHHHHHHhccCCEEEEE
Confidence            654221              26788899999999999874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=89.80  E-value=0.85  Score=44.45  Aligned_cols=96  Identities=17%  Similarity=0.250  Sum_probs=62.7

Q ss_pred             CCEEEEEc-CC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIG-SG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIG-cG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..||=+| +| .|..++.+|+.....+|+++|.+++.++.+++    .|...+--...|..+.+.+.   ....+|.++
T Consensus       172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~vi~~~~~~~~~v~~~---~~~g~Dvvi  244 (363)
T 4dvj_A          172 APAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHHVIDHSKPLAAEVAAL---GLGAPAFVF  244 (363)
T ss_dssp             EEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSEEECTTSCHHHHHHTT---CSCCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCCHHHHHHHh---cCCCceEEE
Confidence            56788888 54 48889999987567899999999988877754    45432211111222111111   235688876


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      -...              .+..+..+.++|+++|++++.
T Consensus       245 d~~g--------------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          245 STTH--------------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             ECSC--------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             ECCC--------------chhhHHHHHHHhcCCCEEEEE
Confidence            5411              125778889999999999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=89.59  E-value=0.68  Score=40.59  Aligned_cols=96  Identities=8%  Similarity=-0.003  Sum_probs=59.9

Q ss_pred             CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc--ChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT--NATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~--Da~~~~~~~~~~~~~~~d  305 (420)
                      .+..||.+|+  |.|..++.+++.. +.+++++|.+++.++.+++    .+... .+-..  +..+.+.+..  ....+|
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~g~~~-~~d~~~~~~~~~~~~~~--~~~~~D  109 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----LGVEY-VGDSRSVDFADEILELT--DGYGVD  109 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----TCCSE-EEETTCSTHHHHHHHHT--TTCCEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCE-EeeCCcHHHHHHHHHHh--CCCCCe
Confidence            4678999994  5577777777764 5789999999987766533    34322 12111  1111111111  234689


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .++-+- -+              ..++...+.|+|+|++++..
T Consensus       110 ~vi~~~-g~--------------~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          110 VVLNSL-AG--------------EAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             EEEECC-CT--------------HHHHHHHHTEEEEEEEEECS
T ss_pred             EEEECC-ch--------------HHHHHHHHHhccCCEEEEEc
Confidence            887542 11              46778889999999998753

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=89.30  E-value=1.3  Score=43.07  Aligned_cols=96  Identities=8%  Similarity=0.022  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc----ChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~----Da~~~~~~~~~~~~~~~  304 (420)
                      .+..||=+|+|. |..++.+|+..-..+|+++|.+++.++.+++    .|...+ +-..    |..+.+.+.   ..+.+
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~v-i~~~~~~~~~~~~i~~~---t~gg~  262 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATEC-LNPKDYDKPIYEVICEK---TNGGV  262 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSEE-ECGGGCSSCHHHHHHHH---TTSCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEE-EecccccchHHHHHHHH---hCCCC
Confidence            467888899875 7888888987643489999999998877753    454322 1111    222222222   13468


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~  347 (420)
                      |.++-.-..              +..+....+.|+++ |++++.
T Consensus       263 Dvvid~~g~--------------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          263 DYAVECAGR--------------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SEEEECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCC--------------HHHHHHHHHHHhcCCCEEEEE
Confidence            888654221              25778889999999 998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=89.30  E-value=2.1  Score=41.39  Aligned_cols=98  Identities=13%  Similarity=0.032  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE--cChhhh---hhhhhccCCCe
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATST---FRSIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~--~Da~~~---~~~~~~~~~~~  303 (420)
                      .+..||=+|+|. |..++.+|+..--..|+++|.+++.++.+++.+ .   .-+.+..  .+..++   +.+..  ....
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~-~---~~~~~~~~~~~~~~~~~~v~~~t--~g~g  252 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEIC-P---EVVTHKVERLSAEESAKKIVESF--GGIE  252 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHC-T---TCEEEECCSCCHHHHHHHHHHHT--SSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhc-h---hcccccccccchHHHHHHHHHHh--CCCC
Confidence            356677789977 888899998864445999999999998887651 1   1122221  111222   11211  2346


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +|.++-....              +..+....+.|+++|++++.
T Consensus       253 ~Dvvid~~g~--------------~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          253 PAVALECTGV--------------ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             CSEEEECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCEEEECCCC--------------hHHHHHHHHHhcCCCEEEEE
Confidence            8888654222              25778889999999999874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=89.21  E-value=1.6  Score=42.50  Aligned_cols=96  Identities=10%  Similarity=0.124  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc----ChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~----Da~~~~~~~~~~~~~~~  304 (420)
                      .+..||-+|+|. |..++.+|+..-..+|+++|.+++.++.+++    .|...+ +-..    |..+.+.+.   ..+.+
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~v-i~~~~~~~~~~~~~~~~---~~~g~  262 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGATEC-VNPQDYKKPIQEVLTEM---SNGGV  262 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEE-ECGGGCSSCHHHHHHHH---TTSCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCceE-ecccccchhHHHHHHHH---hCCCC
Confidence            467888899876 7888888988643389999999998877743    454322 1111    122221221   13468


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~  347 (420)
                      |.++-.-..              +..+....+.|+++ |++.+.
T Consensus       263 D~vid~~g~--------------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          263 DFSFEVIGR--------------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             SEEEECSCC--------------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             cEEEECCCC--------------HHHHHHHHHHhhcCCcEEEEe
Confidence            888654222              25778889999999 998763

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=89.07  E-value=0.95  Score=43.14  Aligned_cols=77  Identities=16%  Similarity=0.063  Sum_probs=55.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCe-EEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~-viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ...+++|+-||.|.+...+.+..-+.. +.++|+++.+++.-+.|.     ++..++++|+.++....++ ....+|.++
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~-~~~~~Dll~   88 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQ-EWGPFDLVI   88 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHH-HTCCCSEEE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhc-ccCCcCEEE
Confidence            356899999999999999887732332 699999999988776653     2446788999887543332 124689998


Q ss_pred             EeCC
Q 014711          309 IQCP  312 (420)
Q Consensus       309 ~~fp  312 (420)
                      ..+|
T Consensus        89 ggpP   92 (295)
T 2qrv_A           89 GGSP   92 (295)
T ss_dssp             ECCC
T ss_pred             ecCC
Confidence            8764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=88.72  E-value=1.5  Score=42.60  Aligned_cols=96  Identities=13%  Similarity=0.152  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc----ChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~----Da~~~~~~~~~~~~~~~  304 (420)
                      .+..||=+|+|. |..++.+|+..-..+|+++|.+++.++.+++    .|...+ +-..    |..+.+.+.   ..+.+
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~v-i~~~~~~~~~~~~v~~~---~~~g~  261 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGATEC-INPQDFSKPIQEVLIEM---TDGGV  261 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCSEE-ECGGGCSSCHHHHHHHH---TTSCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceE-eccccccccHHHHHHHH---hCCCC
Confidence            467888899876 7788888887643389999999998887754    454322 1111    122222222   13468


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~  347 (420)
                      |.++-....              +..+....+.|+++ |++++.
T Consensus       262 D~vid~~g~--------------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          262 DYSFECIGN--------------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             SEEEECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCc--------------HHHHHHHHHhhccCCcEEEEE
Confidence            888654222              25778889999999 998764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=88.61  E-value=1.8  Score=42.20  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc----ChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~----Da~~~~~~~~~~~~~~~  304 (420)
                      .+..||=+|+|. |.+++.+|+..-..+|+++|.+++.++.+++    .|...+ +-..    |..+.+.+..   .+.+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~v-i~~~~~~~~~~~~v~~~~---~~g~  266 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATDC-LNPRELDKPVQDVITELT---AGGV  266 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEE-ECGGGCSSCHHHHHHHHH---TSCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCcEE-EccccccchHHHHHHHHh---CCCc
Confidence            467888899875 7888888988643389999999998877743    454322 1111    2222222221   2368


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~  347 (420)
                      |.++-.-..              +..+....+.|+++ |++.+.
T Consensus       267 Dvvid~~G~--------------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          267 DYSLDCAGT--------------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SEEEESSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             cEEEECCCC--------------HHHHHHHHHHhhcCCCEEEEE
Confidence            888654221              25778889999999 998763

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=88.52  E-value=1.6  Score=42.61  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC---hhhh---hhhhhccCCC
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN---ATST---FRSIVASYPG  302 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D---a~~~---~~~~~~~~~~  302 (420)
                      .+..||-+|+|. |..++.+|+..-..+++++|.+++.++.+++    .|...  ++..+   -.++   +.+..  ...
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~v~~~~--~g~  266 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADL--TLNRRETSVEERRKAIMDIT--HGR  266 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHHHHT--TTS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCcE--EEeccccCcchHHHHHHHHh--CCC
Confidence            467899999774 7778888888633699999999988877753    45432  22222   1122   11211  223


Q ss_pred             eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .+|.++-.-..+              ..+....+.|+++|++.+.
T Consensus       267 g~Dvvid~~g~~--------------~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          267 GADFILEATGDS--------------RALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             CEEEEEECSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             CCcEEEECCCCH--------------HHHHHHHHHHhcCCEEEEE
Confidence            689887653322              4667788999999998764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=88.01  E-value=1.4  Score=42.52  Aligned_cols=96  Identities=15%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~d  305 (420)
                      .+..||-+|+|. |..++.+|+..-..+++++|.+++.++.+++    .|...+  +..   |..+.+.+..  ....+|
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~~~--~~~~~~~~~~~v~~~~--~g~g~D  238 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGADYV--INPFEEDVVKEVMDIT--DGNGVD  238 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCSEE--ECTTTSCHHHHHHHHT--TTSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEE--ECCCCcCHHHHHHHHc--CCCCCC
Confidence            357799999964 7788888887633389999999988877753    343321  221   2222111211  233689


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-.-..              +..+..+.+.|+++|++.+.
T Consensus       239 ~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          239 VFLEFSGA--------------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             EEEECSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            88665222              25678888999999998864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=87.92  E-value=3.5  Score=33.74  Aligned_cols=110  Identities=13%  Similarity=0.061  Sum_probs=65.2

Q ss_pred             CEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          232 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ..++=+|||  .++..+++.  .-+..|+++|.+++.++.+++    .   .+.++.+|+.+.. .+-...-...|.+++
T Consensus         7 ~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~---~~~~~~gd~~~~~-~l~~~~~~~~d~vi~   76 (141)
T 3llv_A            7 YEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E---GFDAVIADPTDES-FYRSLDLEGVSAVLI   76 (141)
T ss_dssp             CSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEECCTTCHH-HHHHSCCTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C---CCcEEECCCCCHH-HHHhCCcccCCEEEE
Confidence            457778885  466555554  236789999999988766643    2   3577888887641 111101245788877


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                      ..++.-          . ...+....+.+. ...++.....+.+.    +.+++.|..
T Consensus        77 ~~~~~~----------~-n~~~~~~a~~~~-~~~iia~~~~~~~~----~~l~~~G~~  118 (141)
T 3llv_A           77 TGSDDE----------F-NLKILKALRSVS-DVYAIVRVSSPKKK----EEFEEAGAN  118 (141)
T ss_dssp             CCSCHH----------H-HHHHHHHHHHHC-CCCEEEEESCGGGH----HHHHHTTCS
T ss_pred             ecCCHH----------H-HHHHHHHHHHhC-CceEEEEEcChhHH----HHHHHcCCC
Confidence            654321          1 133444555566 66777766655543    345666654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.87  E-value=3.8  Score=35.18  Aligned_cols=112  Identities=18%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCccHHHHHHHHh--CC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccC--CCeEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARK--RK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY--PGKLI  305 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~--~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~--~~~~d  305 (420)
                      +..|+=+|||  .++..+++.  .. +..|+++|.+++.++.+++    .+   +..+.+|..+. . .+...  -...|
T Consensus        39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g---~~~~~gd~~~~-~-~l~~~~~~~~ad  107 (183)
T 3c85_A           39 HAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG---RNVISGDATDP-D-FWERILDTGHVK  107 (183)
T ss_dssp             TCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT---CCEEECCTTCH-H-HHHTBCSCCCCC
T ss_pred             CCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC---CCEEEcCCCCH-H-HHHhccCCCCCC
Confidence            3457777775  555544443  12 5689999999987765542    33   45667777543 1 11101  23578


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      .|++..|++.          .+ ..+-...+.+.|+..++..+......+    .+.+.|...
T Consensus       108 ~vi~~~~~~~----------~~-~~~~~~~~~~~~~~~ii~~~~~~~~~~----~l~~~G~~~  155 (183)
T 3c85_A          108 LVLLAMPHHQ----------GN-QTALEQLQRRNYKGQIAAIAEYPDQLE----GLLESGVDA  155 (183)
T ss_dssp             EEEECCSSHH----------HH-HHHHHHHHHTTCCSEEEEEESSHHHHH----HHHHHTCSE
T ss_pred             EEEEeCCChH----------HH-HHHHHHHHHHCCCCEEEEEECCHHHHH----HHHHcCCCE
Confidence            8887655431          11 223345667778889888887665433    455566543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=87.74  E-value=1.4  Score=42.98  Aligned_cols=96  Identities=15%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE----cChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA----TNATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~----~Da~~~~~~~~~~~~~~~  304 (420)
                      .+..||=+|+|. |..++.+|+..-..+|+++|.+++.++.+++    .|...+ +-.    .|..+.+.+.   .++.+
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~v-i~~~~~~~~~~~~i~~~---~~gg~  264 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVNEF-VNPKDHDKPIQEVIVDL---TDGGV  264 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCCEE-ECGGGCSSCHHHHHHHH---TTSCB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCcEE-EccccCchhHHHHHHHh---cCCCC
Confidence            356788889975 8888889988644489999999998887643    454321 111    1222222222   23478


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~  347 (420)
                      |.++-....              +..+....+.|++| |++.+.
T Consensus       265 D~vid~~g~--------------~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          265 DYSFECIGN--------------VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             SEEEECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCC--------------HHHHHHHHHHhhccCCEEEEE
Confidence            988764322              26788899999997 998874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.63  E-value=2.3  Score=42.42  Aligned_cols=100  Identities=12%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             CEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeEEE
Q 014711          232 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS  308 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~i~  308 (420)
                      ..|+=+||  |.++..+++.  .-+..|+.||.+++.++.+++    .|   +.++.+|+.+..  .+. ..-...|.|+
T Consensus         5 ~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g---~~vi~GDat~~~--~L~~agi~~A~~vi   73 (413)
T 3l9w_A            5 MRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG---MKVFYGDATRMD--LLESAGAAKAEVLI   73 (413)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT---CCCEESCTTCHH--HHHHTTTTTCSEEE
T ss_pred             CeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC---CeEEEcCCCCHH--HHHhcCCCccCEEE
Confidence            44666776  5555555543  236789999999999887753    23   567899998741  111 1234578888


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  353 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~  353 (420)
                      +..+++.          . ...+-...+.+.|...++..+.+...
T Consensus        74 v~~~~~~----------~-n~~i~~~ar~~~p~~~Iiara~~~~~  107 (413)
T 3l9w_A           74 NAIDDPQ----------T-NLQLTEMVKEHFPHLQIIARARDVDH  107 (413)
T ss_dssp             ECCSSHH----------H-HHHHHHHHHHHCTTCEEEEEESSHHH
T ss_pred             ECCCChH----------H-HHHHHHHHHHhCCCCeEEEEECCHHH
Confidence            7765542          1 24456667788899888888765554

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=87.45  E-value=2.4  Score=40.39  Aligned_cols=123  Identities=11%  Similarity=0.015  Sum_probs=78.5

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  312 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp  312 (420)
                      .++|+=||-|.+...+-+.. -..+.++|+++.+++.-+.|..      -.++++|+.++..+.+    ..+|.++..+|
T Consensus         2 kvidLFsG~GG~~~G~~~aG-~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~----~~~D~l~ggpP   70 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF----PKCDGIIGGPP   70 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTT-CEEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS----CCCSEEECCCC
T ss_pred             eEEEeCcCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC----CcccEEEecCC
Confidence            58999999999998887762 1246799999999888776632      2578899988743323    25788876654


Q ss_pred             -CCCCCCc------chhhhhhHHHHHHHHHhhccCCeEEEEEe-------CcHHHHHHHHHHHHHcCCcee
Q 014711          313 -NPDFNRP------EHRWRMVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       313 -dp~~k~~------~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-------d~~~~~~~~~~~l~~~g~~~~  369 (420)
                       .++....      +.+..|+ .++++ +.+.++|. +|+++-       +....++.+++.|++.||...
T Consensus        71 CQ~fS~ag~~~g~~d~R~~L~-~~~~r-~i~~~~Pk-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~  138 (331)
T 3ubt_Y           71 SQSWSEGGSLRGIDDPRGKLF-YEYIR-ILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVH  138 (331)
T ss_dssp             GGGTEETTEECCTTCGGGHHH-HHHHH-HHHHHCCS-EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEE
T ss_pred             CCCcCCCCCccCCCCchhHHH-HHHHH-HHhccCCe-EEEeeeecccccccccchhhhhhhhhccCCcEEE
Confidence             2221111      1112232 24444 44557886 455552       334567888999999887653

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=87.24  E-value=3.8  Score=39.14  Aligned_cols=98  Identities=13%  Similarity=0.060  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCCcc-HHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNG-LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G-~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+..||=+|+|.+ .+++.+|+..-..+|+++|.+++.++.+++    .|... +..-..|..+.+.+..  ....+|.+
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t--~g~g~d~~  236 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT--GGLGVQSA  236 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT--TSSCEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc--CCCCceEE
Confidence            4678888999874 456667777667899999999988776644    34332 2222233333222222  23346666


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +..-.              .+..+....+.|+++|++.+.
T Consensus       237 ~~~~~--------------~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          237 IVCAV--------------ARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             EECCS--------------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             EEecc--------------CcchhheeheeecCCceEEEE
Confidence            55311              136778888999999998764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=87.18  E-value=2.5  Score=40.97  Aligned_cols=94  Identities=15%  Similarity=0.108  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC---hhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN---ATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D---a~~~~~~~~~~~~~~~d  305 (420)
                      .+..||=+|+|. |..++.+|+.. ..+++++|.+++.++.+++    .|...+  +..+   ..+.+.+..  ....+|
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v--i~~~~~~~~~~v~~~~--~g~g~D  259 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFA----LGADHG--INRLEEDWVERVYALT--GDRGAD  259 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCSEE--EETTTSCHHHHHHHHH--TTCCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHH----cCCCEE--EcCCcccHHHHHHHHh--CCCCce
Confidence            467899999886 78888888875 5699999999988877654    454322  2222   222112222  234689


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-....               ..+....+.|+|+|++.+.
T Consensus       260 ~vid~~g~---------------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          260 HILEIAGG---------------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             EEEEETTS---------------SCHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCh---------------HHHHHHHHHhhcCCEEEEE
Confidence            88765331               2456677899999999875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=87.09  E-value=2.6  Score=41.10  Aligned_cols=93  Identities=13%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..||-+|+|. |..++.+|+.. +.+++++|.+++.++.+++    .|...+  +..+-.+.... +   ...+|.++
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~~v--i~~~~~~~~~~-~---~~g~Dvvi  262 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGADEV--VNSRNADEMAA-H---LKSFDFIL  262 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSEE--EETTCHHHHHT-T---TTCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEE--eccccHHHHHH-h---hcCCCEEE
Confidence            467889999986 88888899876 5689999999998887754    454322  22211122111 1   24688886


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      -.-..+              ..++...+.|+++|++.+.
T Consensus       263 d~~g~~--------------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          263 NTVAAP--------------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             ECCSSC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred             ECCCCH--------------HHHHHHHHHhccCCEEEEe
Confidence            543332              2456677899999998764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=87.01  E-value=3  Score=37.16  Aligned_cols=101  Identities=13%  Similarity=0.069  Sum_probs=62.1

Q ss_pred             EEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014711          234 VVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  311 (420)
Q Consensus       234 vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f  311 (420)
                      |+=+|  .|.++..+|+.  ..+..|+.+|.+++.++...+.   .   ++.++.+|+.+.. .+-...-...|.+++..
T Consensus         3 iiIiG--~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~---~~~~i~gd~~~~~-~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            3 VIIIG--GETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L---KATIIHGDGSHKE-ILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             EEEEC--CHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S---SSEEEESCTTSHH-HHHHHTCCTTCEEEECC
T ss_pred             EEEEC--CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c---CCeEEEcCCCCHH-HHHhcCcccCCEEEEec
Confidence            34445  47777777765  2467899999999887654332   2   3578899987641 11000123568887765


Q ss_pred             CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHH
Q 014711          312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM  354 (420)
Q Consensus       312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~  354 (420)
                      ++..           ...++....+.+.|...++..+.++.+.
T Consensus        74 ~~d~-----------~n~~~~~~a~~~~~~~~iia~~~~~~~~  105 (218)
T 3l4b_C           74 PRDE-----------VNLFIAQLVMKDFGVKRVVSLVNDPGNM  105 (218)
T ss_dssp             SCHH-----------HHHHHHHHHHHTSCCCEEEECCCSGGGH
T ss_pred             CCcH-----------HHHHHHHHHHHHcCCCeEEEEEeCcchH
Confidence            5431           1245566666777778887776665543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=86.82  E-value=1.9  Score=41.48  Aligned_cols=95  Identities=18%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~  304 (420)
                      .+..+|-+|+  |.|..++.+++.. ..+++++|.+++.++.+++    .|... .+-..   +..+.+....   ++.+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g~~~-~~d~~~~~~~~~~~~~~~---~~~~  239 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IGGEV-FIDFTKEKDIVGAVLKAT---DGGA  239 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TTCCE-EEETTTCSCHHHHHHHHH---TSCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cCCce-EEecCccHhHHHHHHHHh---CCCC
Confidence            4688999999  5788888888875 5699999999887766643    34331 12111   2222222222   2268


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |.++-+...              ...++.+.+.|+++|++++.
T Consensus       240 D~vi~~~g~--------------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          240 HGVINVSVS--------------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             EEEEECSSC--------------HHHHHHHTTSEEEEEEEEEC
T ss_pred             CEEEECCCc--------------HHHHHHHHHHHhcCCEEEEE
Confidence            888665221              25778889999999998764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=86.54  E-value=1.4  Score=42.46  Aligned_cols=97  Identities=15%  Similarity=0.222  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCC--ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC--hhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSG--NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN--ATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG--~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D--a~~~~~~~~~~~~~~~d  305 (420)
                      .+..+|-+|+|  .|..++.+++..+..+++++|.+++.++.+++    .|... .+-..|  ..+.+.+..  ..+.+|
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~--~~~~~d  242 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGADY-VINASMQDPLAEIRRIT--ESKGVD  242 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCSE-EEETTTSCHHHHHHHHT--TTSCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCE-EecCCCccHHHHHHHHh--cCCCce
Confidence            46889999998  66777888887646799999999988877743    34332 222222  111111211  114788


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-.-..              +..++...+.|+++|++++.
T Consensus       243 ~vi~~~g~--------------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          243 AVIDLNNS--------------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             EEEESCCC--------------HHHHTTGGGGEEEEEEEEEC
T ss_pred             EEEECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            88654221              24677788999999998764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=86.07  E-value=2.6  Score=40.11  Aligned_cols=94  Identities=11%  Similarity=0.103  Sum_probs=60.6

Q ss_pred             CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~  304 (420)
                      .+..+|-.||  |.|..++.+++.. +.+++++|.+++.++.+++    .+.. ..+-..   +..+.+...   ..+.+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~~~~~~---~~~~~  215 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ----IGFD-AAFNYKTVNSLEEALKKA---SPDGY  215 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS-EEEETTSCSCHHHHHHHH---CTTCE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCc-EEEecCCHHHHHHHHHHH---hCCCC
Confidence            4688999998  6777788888765 5699999999988877622    3432 222111   222222221   12468


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |.++-+-.               ...+....+.|+++|++.+.
T Consensus       216 d~vi~~~g---------------~~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          216 DCYFDNVG---------------GEFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             EEEEESSC---------------HHHHHHHHTTEEEEEEEEEC
T ss_pred             eEEEECCC---------------hHHHHHHHHHHhcCCEEEEE
Confidence            88865421               13567788999999998764

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=85.97  E-value=6.8  Score=39.87  Aligned_cols=132  Identities=12%  Similarity=-0.011  Sum_probs=78.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhh------------hc
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSI------------VA  298 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~------------~~  298 (420)
                      ..+++|+-||.|.+...+.+.. -..+.++|+++.+++.-+.|...  .++..++++|+.++....            +.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG-~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~  164 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHIR  164 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTT-EEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhhh
Confidence            4689999999999999987762 12489999999988877766421  123456789998874110            00


Q ss_pred             cCCCeEeEEEEeCCCC-CCCCcc---------------hhhhhhHHHHHHHHHhhccCCeEEEEE-------eCcHHHHH
Q 014711          299 SYPGKLILVSIQCPNP-DFNRPE---------------HRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVML  355 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp-~~k~~~---------------~k~Rl~~~~~l~~i~~~LkpgG~l~~~-------td~~~~~~  355 (420)
                      .....+|.++..+|=. +.....               .+..|+ .++++.+ +.++|- .|+++       ++....+.
T Consensus       165 ~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf-~e~~riI-~~~rPk-~fvlENV~gl~s~~~g~~f~  241 (482)
T 3me5_A          165 QHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLF-FDVVRII-DARRPA-MFVLENVKNLKSHDKGKTFR  241 (482)
T ss_dssp             HHSCCCSEEEEECCCCCC------------------CTTTTSHH-HHHHHHH-HHHCCS-EEEEEEETTTTTGGGGHHHH
T ss_pred             hcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHH-HHHHHHH-HHcCCc-EEEEeCcHHHhcccCCcHHH
Confidence            0113589888876522 221111               111122 2444433 456785 44454       13335677


Q ss_pred             HHHHHHHHcCCce
Q 014711          356 RMKQQFLEYGKGK  368 (420)
Q Consensus       356 ~~~~~l~~~g~~~  368 (420)
                      .+++.|++.|+..
T Consensus       242 ~i~~~L~~lGY~v  254 (482)
T 3me5_A          242 IIMQTLDELGYDV  254 (482)
T ss_dssp             HHHHHHHHTTEEE
T ss_pred             HHHHHHhcCCcEE
Confidence            8899999988654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=84.94  E-value=2.5  Score=40.53  Aligned_cols=95  Identities=11%  Similarity=0.058  Sum_probs=61.8

Q ss_pred             CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc--ChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT--NATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~--Da~~~~~~~~~~~~~~~d  305 (420)
                      .+..+|-+|+  |.|..++.+++.. ..++++++.+++.++.+++    .|...+ +-..  |..+.+.+..  ....+|
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~ga~~~-~d~~~~~~~~~~~~~~--~~~~~d  237 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKA----LGADET-VNYTHPDWPKEVRRLT--GGKGAD  237 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEE-EETTSTTHHHHHHHHT--TTTCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCEE-EcCCcccHHHHHHHHh--CCCCce
Confidence            4688999998  6788888888876 5699999999998887753    344322 1111  1111112221  134689


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-.-. +              ..+..+.+.|+++|++.+.
T Consensus       238 ~vi~~~g-~--------------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          238 KVVDHTG-A--------------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             EEEESSC-S--------------SSHHHHHHHEEEEEEEEES
T ss_pred             EEEECCC-H--------------HHHHHHHHhhccCCEEEEE
Confidence            8866532 2              2456677899999998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=84.90  E-value=1.6  Score=41.83  Aligned_cols=95  Identities=8%  Similarity=0.002  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCC--ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE--cChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSG--NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG--~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~--~Da~~~~~~~~~~~~~~~d  305 (420)
                      .+..||=+|+|  .|..++.+|+.. +.+++++|.+++.++.+++    .|... .+-.  .|..+.+.+..  ....+|
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~~-~~~~~~~~~~~~~~~~~--~~~g~D  215 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAAY-VIDTSTAPLYETVMELT--NGIGAD  215 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSE-EEETTTSCHHHHHHHHT--TTSCEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCcE-EEeCCcccHHHHHHHHh--CCCCCc
Confidence            46889999987  688888888876 5699999999988877765    34332 1211  12222212222  234689


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-.-..               ..+....+.|+++|++++.
T Consensus       216 vvid~~g~---------------~~~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          216 AAIDSIGG---------------PDGNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             EEEESSCH---------------HHHHHHHHTEEEEEEEEEC
T ss_pred             EEEECCCC---------------hhHHHHHHHhcCCCEEEEE
Confidence            88654211               2233445899999999875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=84.58  E-value=2.9  Score=41.04  Aligned_cols=112  Identities=16%  Similarity=0.242  Sum_probs=76.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc--EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n--v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..||.|+.+.|..+..++...    ++.+.=|--.-..++.|+.++++.+  +++...-. .        ....+|.+.
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~--------~~~~~~~v~  105 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLNGIDESSVKFLDSTA-D--------YPQQPGVVL  105 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTS-C--------CCSSCSEEE
T ss_pred             CCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHcCCCccceEeccccc-c--------cccCCCEEE
Confidence            3569999999999999988653    3445436666667788888888864  56543211 1        356789998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  364 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~  364 (420)
                      +..|..       +..+  ...|..+...|+||+.+++..++......+.+.|++.
T Consensus       106 ~~lpk~-------~~~l--~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~  152 (375)
T 4dcm_A          106 IKVPKT-------LALL--EQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV  152 (375)
T ss_dssp             EECCSC-------HHHH--HHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred             EEcCCC-------HHHH--HHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence            875432       1122  3678899999999999988766554445566666654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=84.28  E-value=2.6  Score=40.34  Aligned_cols=95  Identities=13%  Similarity=0.143  Sum_probs=61.9

Q ss_pred             CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~  304 (420)
                      .+..||-+|+  |.|..++.+++.. +.++++++.+++.++.+++.   .|... .+-..   |..+.+...   ....+
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~---~g~~~-~~d~~~~~~~~~~~~~~---~~~~~  226 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTK---FGFDD-AFNYKEESDLTAALKRC---FPNGI  226 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---SCCSE-EEETTSCSCSHHHHHHH---CTTCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH---cCCce-EEecCCHHHHHHHHHHH---hCCCC
Confidence            4688999998  6788888888875 56999999999887776532   34332 12111   222222221   13468


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |.++-+..               ...+....+.|+++|++.+.
T Consensus       227 d~vi~~~g---------------~~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          227 DIYFENVG---------------GKMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             EEEEESSC---------------HHHHHHHHTTEEEEEEEEEC
T ss_pred             cEEEECCC---------------HHHHHHHHHHHhcCCEEEEE
Confidence            88865411               14677888999999998764

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=83.44  E-value=2.8  Score=40.22  Aligned_cols=73  Identities=8%  Similarity=-0.003  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCc-cH-HHHHHHHhCCCCeEEE-EeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          231 QPLVVDIGSGN-GL-FLLGMARKRKDLNFLG-LEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       231 ~~~vLDIGcG~-G~-~~~~lA~~~P~~~viG-iDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .-++-=||||. |. ..+...+..|+..+++ +|.+++..   ++.+++.+..+   ...|..+++      .+..+|.|
T Consensus        23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a---~~~a~~~g~~~---~y~d~~ell------~~~~iDaV   90 (350)
T 4had_A           23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRA---REMADRFSVPH---AFGSYEEML------ASDVIDAV   90 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHH---HHHHHHHTCSE---EESSHHHHH------HCSSCSEE
T ss_pred             ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHH---HHHHHHcCCCe---eeCCHHHHh------cCCCCCEE
Confidence            34677899986 53 3344556689999987 48887654   44455566543   356777764      35679999


Q ss_pred             EEeCCCCC
Q 014711          308 SIQCPNPD  315 (420)
Q Consensus       308 ~~~fpdp~  315 (420)
                      ++.-|+.+
T Consensus        91 ~I~tP~~~   98 (350)
T 4had_A           91 YIPLPTSQ   98 (350)
T ss_dssp             EECSCGGG
T ss_pred             EEeCCCch
Confidence            99866554

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=83.35  E-value=16  Score=29.15  Aligned_cols=111  Identities=10%  Similarity=0.112  Sum_probs=62.0

Q ss_pred             CEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          232 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ..|+=+||  |.++..+++.  ..+..++.+|.+++.++..++.   .   ++.++.+|..+. ..+....-...|.|++
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~---~~~~~~~d~~~~-~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---DALVINGDCTKI-KTLEDAGIEDADMYIA   75 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---SSEEEESCTTSH-HHHHHTTTTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c---CcEEEEcCCCCH-HHHHHcCcccCCEEEE
Confidence            45777777  5555555443  2357899999998876554332   1   245667776543 1111001235788887


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                      ..|++.          . ...+..+.+.+.++ .++..+....+.    +.+++.|..
T Consensus        76 ~~~~~~----------~-~~~~~~~~~~~~~~-~ii~~~~~~~~~----~~l~~~g~~  117 (140)
T 1lss_A           76 VTGKEE----------V-NLMSSLLAKSYGIN-KTIARISEIEYK----DVFERLGVD  117 (140)
T ss_dssp             CCSCHH----------H-HHHHHHHHHHTTCC-CEEEECSSTTHH----HHHHHTTCS
T ss_pred             eeCCch----------H-HHHHHHHHHHcCCC-EEEEEecCHhHH----HHHHHcCCC
Confidence            654431          1 13445556667775 555556555542    345666754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=83.10  E-value=3.7  Score=39.36  Aligned_cols=95  Identities=12%  Similarity=0.097  Sum_probs=60.5

Q ss_pred             CCCEEEEE-cCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDI-GSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDI-GcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+..||=+ |+| .|..++.+|+.. ..++++++.+++.++.+++    .|...+--...|..+.+.+.   ....+|.+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~---~~~g~Dvv  221 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK----MGADIVLNHKESLLNQFKTQ---GIELVDYV  221 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCSEEECTTSCHHHHHHHH---TCCCEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcEEEECCccHHHHHHHh---CCCCccEE
Confidence            36788888 454 477888888875 5699999999988877765    34432211111222221221   24568988


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      +-...              .+..+..+.++|+++|+++.
T Consensus       222 ~d~~g--------------~~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          222 FCTFN--------------TDMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             EESSC--------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCC--------------chHHHHHHHHHhccCCEEEE
Confidence            65421              12567888999999999965

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=82.47  E-value=5.3  Score=38.06  Aligned_cols=97  Identities=14%  Similarity=0.128  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE--cChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~--~Da~~~~~~~~~~~~~~~d~  306 (420)
                      .+..||=.|+|. |.+++.+|+..-...++++|.+++.++.+++    .|... .+-.  .|..+.....-  ....+|.
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~~-~i~~~~~~~~~~~~~~~--~~~g~d~  232 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAMQ-TFNSSEMSAPQMQSVLR--ELRFNQL  232 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSE-EEETTTSCHHHHHHHHG--GGCSSEE
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCeE-EEeCCCCCHHHHHHhhc--ccCCccc
Confidence            467888899975 5556777887766678999999998877754    45432 1111  22222211111  1234666


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++-....              +..++...+.|++||++.+.
T Consensus       233 v~d~~G~--------------~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          233 ILETAGV--------------PQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             EEECSCS--------------HHHHHHHHHHCCTTCEEEEC
T ss_pred             ccccccc--------------cchhhhhhheecCCeEEEEE
Confidence            6543211              36788889999999999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=82.45  E-value=6.9  Score=32.52  Aligned_cols=114  Identities=9%  Similarity=0.007  Sum_probs=67.1

Q ss_pred             CEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCC-hHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          232 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVN-GKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis-~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ..++=+||  |.++..+++..  -+..|+.+|.+ ++.++...+..    ..++.++.+|+.+.. .+-...-...|.++
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~----~~~~~~i~gd~~~~~-~l~~a~i~~ad~vi   76 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL----GDNADVIPGDSNDSS-VLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH----CTTCEEEESCTTSHH-HHHHHTTTTCSEEE
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh----cCCCeEEEcCCCCHH-HHHHcChhhCCEEE
Confidence            34555665  77777766552  35789999997 45444333221    124788999987531 11000124578887


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                      +..++..          . ...+....+.+.|...++...+++.+.+    .++..|..
T Consensus        77 ~~~~~d~----------~-n~~~~~~a~~~~~~~~ii~~~~~~~~~~----~l~~~G~~  120 (153)
T 1id1_A           77 ALSDNDA----------D-NAFVVLSAKDMSSDVKTVLAVSDSKNLN----KIKMVHPD  120 (153)
T ss_dssp             ECSSCHH----------H-HHHHHHHHHHHTSSSCEEEECSSGGGHH----HHHTTCCS
T ss_pred             EecCChH----------H-HHHHHHHHHHHCCCCEEEEEECCHHHHH----HHHHcCCC
Confidence            7644421          1 2455666777888888888877766533    34566654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=82.35  E-value=0.24  Score=60.44  Aligned_cols=102  Identities=15%  Similarity=0.104  Sum_probs=48.9

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC---C--CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR---K--DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~---P--~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ..+|||||.|+|..+..+.+..   |  ...|+-.|+|+...+.|+++.....   +..-.-|..+.  .-+  .+.++|
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d---i~~~~~d~~~~--~~~--~~~~yd 1313 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH---VTQGQWDPANP--APG--SLGKAD 1313 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT---EEEECCCSSCC--CC-------CC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc---ccccccccccc--ccC--CCCcee
Confidence            3589999999998776655442   2  2468889999988877777654421   22211122110  000  245689


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|+..  +..+..+..      ...|..+.+.|||||++++.
T Consensus      1314 lvia~--~vl~~t~~~------~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A         1314 LLVCN--CALATLGDP------AVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp             EEEEE--CC--------------------------CCEEEEE
T ss_pred             EEEEc--ccccccccH------HHHHHHHHHhcCCCcEEEEE
Confidence            98765  332211111      25788899999999998875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=82.28  E-value=3  Score=40.03  Aligned_cols=94  Identities=12%  Similarity=0.141  Sum_probs=61.5

Q ss_pred             CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC--hhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN--ATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D--a~~~~~~~~~~~~~~~d  305 (420)
                      .+..||=+|+  |.|..++.+|+.. +.++++++.+++.++.+++    .|...+  +..+  ..+.+.+..  ....+|
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~v--~~~~~~~~~~v~~~~--~~~g~D  229 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----VGADIV--LPLEEGWAKAVREAT--GGAGVD  229 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSEE--EESSTTHHHHHHHHT--TTSCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcEE--ecCchhHHHHHHHHh--CCCCce
Confidence            4688999997  5688888888876 5699999999988877655    344322  2222  222222222  233689


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-.-..               ..+....+.|+++|++++.
T Consensus       230 vvid~~g~---------------~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          230 MVVDPIGG---------------PAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             EEEESCC-----------------CHHHHHHTEEEEEEEEEC
T ss_pred             EEEECCch---------------hHHHHHHHhhcCCCEEEEE
Confidence            88654222               2456678899999999874

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=82.13  E-value=10  Score=37.81  Aligned_cols=78  Identities=13%  Similarity=0.145  Sum_probs=48.5

Q ss_pred             CEEEEEcCCc-cHHHHHHHHhCCCCeEEE-EeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeEeE
Q 014711          232 PLVVDIGSGN-GLFLLGMARKRKDLNFLG-LEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       232 ~~vLDIGcG~-G~~~~~lA~~~P~~~viG-iDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~d~  306 (420)
                      .+|.=||||. |..-+......|+..+++ +|.+++..+.+.+.+.+.+++.+.....   |..+++      .+..+|.
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll------~~~~vD~   94 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNML------KDKNIDA   94 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHT------TCTTCCE
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHh------cCCCCCE
Confidence            4678889983 222223333468887765 4999988877766655556544444432   555553      3456999


Q ss_pred             EEEeCCCCC
Q 014711          307 VSIQCPNPD  315 (420)
Q Consensus       307 i~~~fpdp~  315 (420)
                      |++.-|+.+
T Consensus        95 V~i~tp~~~  103 (444)
T 2ixa_A           95 VFVSSPWEW  103 (444)
T ss_dssp             EEECCCGGG
T ss_pred             EEEcCCcHH
Confidence            999755543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=81.79  E-value=3.8  Score=40.32  Aligned_cols=97  Identities=13%  Similarity=0.102  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE---cChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~---~Da~~~~~~~~~~~~~~~d  305 (420)
                      .+..||=+|+|. |..++.+|+......|+++|.+++.++.+++    .|...  ++.   .|..+.+.+..  ....+|
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~i~~~t--~g~g~D  284 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGADH--VIDPTKENFVEAVLDYT--NGLGAK  284 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSE--EECTTTSCHHHHHHHHT--TTCCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCE--EEcCCCCCHHHHHHHHh--CCCCCC
Confidence            367788899876 7778888988644499999999998887754    34332  222   12222222221  233688


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhc----cCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL----VHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~L----kpgG~l~~~  347 (420)
                      .++-.-..+             ...+..+.+.|    +++|++.+.
T Consensus       285 ~vid~~g~~-------------~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          285 LFLEATGVP-------------QLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             EEEECSSCH-------------HHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             EEEECCCCc-------------HHHHHHHHHHHHhccCCCcEEEEe
Confidence            886542222             02445555555    999999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=81.73  E-value=4.6  Score=38.60  Aligned_cols=93  Identities=13%  Similarity=0.216  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~d  305 (420)
                      .+..||-+|+| .|..++.+|+.. ..+++++|.+++.++.+++    .|...+  +..   |..+.+.+.   . ..+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~--~d~~~~~~~~~~~~~---~-~~~d  232 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGADLV--VNPLKEDAAKFMKEK---V-GGVH  232 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCSEE--ECTTTSCHHHHHHHH---H-SSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----CCCCEE--ecCCCccHHHHHHHH---h-CCCC
Confidence            46789999996 477888888876 5699999999998887753    454321  111   111111111   1 3688


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-....              +..++...+.|+++|++.+.
T Consensus       233 ~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          233 AAVVTAVS--------------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             EEEESSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCC--------------HHHHHHHHHHhhcCCEEEEe
Confidence            88654221              25678888999999998764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=80.81  E-value=5.7  Score=38.23  Aligned_cols=95  Identities=20%  Similarity=0.186  Sum_probs=60.0

Q ss_pred             CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC--hhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN--ATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D--a~~~~~~~~~~~~~~~d  305 (420)
                      .+..||-.|+  |.|..++.+++.. +.++++++.+++.++.+++    .|... .+-..+  ..+.+.+..  ....+|
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~-~~d~~~~~~~~~~~~~~--~~~~~D  241 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQ----NGAHE-VFNHREVNYIDKIKKYV--GEKGID  241 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSE-EEETTSTTHHHHHHHHH--CTTCEE
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHH----cCCCE-EEeCCCchHHHHHHHHc--CCCCcE
Confidence            4678999997  5677888888875 5799999999988776543    34332 111111  111111222  234688


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-+.               ....+....++|+++|++.+.
T Consensus       242 ~vi~~~---------------G~~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          242 IIIEML---------------ANVNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             EEEESC---------------HHHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECC---------------ChHHHHHHHHhccCCCEEEEE
Confidence            886541               113567778999999998764

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=80.61  E-value=11  Score=35.83  Aligned_cols=107  Identities=9%  Similarity=0.021  Sum_probs=63.4

Q ss_pred             EEEEEcCCc-cHHHHHHHHhCCCCeEEE-EeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          233 LVVDIGSGN-GLFLLGMARKRKDLNFLG-LEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       233 ~vLDIGcG~-G~~~~~lA~~~P~~~viG-iDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +|.=||||. |...+....+.|+..+++ +|.+++..+...   .+.+.   .  ..|..+++      .+..+|.|++.
T Consensus         5 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~---~~~~~---~--~~~~~~~l------~~~~~D~V~i~   70 (331)
T 4hkt_A            5 RFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIA---GAYGC---E--VRTIDAIE------AAADIDAVVIC   70 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH---HHTTC---E--ECCHHHHH------HCTTCCEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHH---HHhCC---C--cCCHHHHh------cCCCCCEEEEe
Confidence            467789986 444444444568888886 799887654433   33443   3  56666654      24468999887


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE---eCcHHHHHHHHHHHHHcCCc
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~---td~~~~~~~~~~~l~~~g~~  367 (420)
                      -|+.+              -.+.+..+|+.|-.++++   +......+++.+..++.+..
T Consensus        71 tp~~~--------------h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (331)
T 4hkt_A           71 TPTDT--------------HADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK  116 (331)
T ss_dssp             SCGGG--------------HHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCchh--------------HHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe
Confidence            55543              122334456666556553   23344456666766776644

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=80.49  E-value=4  Score=39.31  Aligned_cols=92  Identities=11%  Similarity=0.056  Sum_probs=58.6

Q ss_pred             CEEEEEcCCc-cHHH-HHHH-HhCCCCe-EEEEeCChH---HHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeE
Q 014711          232 PLVVDIGSGN-GLFL-LGMA-RKRKDLN-FLGLEVNGK---LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       232 ~~vLDIGcG~-G~~~-~~lA-~~~P~~~-viGiDis~~---~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ..||=+|+|. |.++ +.+| +.. ..+ |+++|.+++   .++.+++    .|...+.....|..+ +.+.    .+.+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~~v~~~~~~~~~-i~~~----~gg~  243 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEE----LDATYVDSRQTPVED-VPDV----YEQM  243 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHH----TTCEEEETTTSCGGG-HHHH----SCCE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHH----cCCcccCCCccCHHH-HHHh----CCCC
Confidence            7899999864 7777 8888 765 455 999999987   7776643    454322000112222 2221    1268


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |.++-....              +..++...+.|+++|++.+.
T Consensus       244 Dvvid~~g~--------------~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          244 DFIYEATGF--------------PKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             EEEEECSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCC--------------hHHHHHHHHHHhcCCEEEEE
Confidence            888654221              24678889999999998864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=80.25  E-value=3.9  Score=38.95  Aligned_cols=95  Identities=12%  Similarity=0.130  Sum_probs=61.8

Q ss_pred             CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc--ChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT--NATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~--Da~~~~~~~~~~~~~~~d  305 (420)
                      .+..||-+|+  |.|..++.+++.. ..+|++++.+++.++.+.+.   .|... .+-..  |..+.+.+.   ....+|
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~---~~~~~d  220 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEE---LGFDG-AIDYKNEDLAAGLKRE---CPKGID  220 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---TCCSE-EEETTTSCHHHHHHHH---CTTCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH---cCCCE-EEECCCHHHHHHHHHh---cCCCce
Confidence            4788999998  5688888888875 56999999999887766332   34322 12111  222211111   234688


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-+-.               ...+....+.|+++|++++.
T Consensus       221 ~vi~~~g---------------~~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          221 VFFDNVG---------------GEILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEESSC---------------HHHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCC---------------cchHHHHHHHHhhCCEEEEE
Confidence            8765411               14678888999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d1phpa_	394	c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus st	2e-25
d1vpea_	398	c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga	3e-23
d1ltka_	417	c.86.1.1 (A:) Phosphoglycerate kinase {Malaria par	7e-22
d16pka_	415	c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma	2e-21
d1qpga_	415	c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yea	2e-20
d1v6sa_	390	c.86.1.1 (A:) Phosphoglycerate kinase {Thermus the	4e-19
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	2e-17
d1hdia_	413	c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus sc	2e-16
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	2e-14

>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 394

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  104 bits (261), Expect = 2e-25
 Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 5/210 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  V   L+E+   + 
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245

Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A   ++ A++K +    P D     +  +    ++ P   IP  W  +DIGP++ E    
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            I + K V+W GP+       +++G      +   +++     +VIG     A  +    
Sbjct: 306 VIRESKLVVWNGPMGVFEMDAFAHGTKA---IAEALAEALDTYSVIGGGDSAAAVEKFGL 362

Query: 185 IFGLNMVES-GSAVWEFLKGRMLPGVSALD 213
              ++ + + G A  EF++G+ LPGV AL+
Sbjct: 363 ADKMDHISTGGGASLEFMEGKQLPGVVALE 392

>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Length = 398

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermotoga maritima [TaxId: 2336]

 Score = 98.2 bits (244), Expect = 3e-23
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 4/210 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           EKPY  ++GG  + +K   +  L  + D ++  G M F  + ALG  V    VE+   D 
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244

Query: 66  ASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
           A +L++ A++K + I+ P D    +       +  +    GIP+GW  +DIGP ++E   
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304

Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
             ++  K V+W GP+       ++ G  ++   +  +++    +TV+G     A      
Sbjct: 305 QKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKFG 363

Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
                + V + G A  EFL+G+ LPG++++
Sbjct: 364 LEDKFSHVSTGGGASLEFLEGKELPGIASM 393

>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 417

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 94.8 bits (235), Expect = 7e-22
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 13/216 (6%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D +I  G M++        + +   L ++  + 
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265

Query: 65  AASDLIQFARDKHITILYPKDFWCTK--IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              ++++ A+ K++ I  P DF       ++ N   +    GIPD W  +D GP+S+E  
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325

Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              I   K VIW GP        ++ G+ +   ++ +V++      V G      + +  
Sbjct: 326 KDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQ-- 383

Query: 183 SSIFGLN-----MVESGSAVWEFLKGRMLPGVSALD 213
                       +   G A  E L+G+ LPGV AL 
Sbjct: 384 ---QNKKNEISHVSTGGGASLELLEGKELPGVLALS 416

>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 93.3 bits (231), Expect = 2e-21
 Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 2/209 (0%)

Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P  AI+GG  + +K   L  +  R D L+  G M++  + A G  +     E+   + A
Sbjct: 205 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 264

Query: 67  SDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
             L++ A D+ + ++ P D  C T+    +   I     IP+G   +DIGP+++E+   T
Sbjct: 265 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 324

Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
           I KCK  IW GP+       YS G   +   + + +     +++IG     + A++S   
Sbjct: 325 IGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEA 384

Query: 186 FGLNMVES-GSAVWEFLKGRMLPGVSALD 213
             ++ V + G A  E L+G+ LPGV+ LD
Sbjct: 385 KRMSHVSTGGGASLELLEGKTLPGVTVLD 413

>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.1 bits (223), Expect = 2e-20
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 5/212 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
            +P+ AI+GG  + +K   +  L  + D +I  G M+F          +   + +K   +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
               L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +  
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321

Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
            +T+ K K ++W GP       +++ G   L   + K S    N  +IG      +AK  
Sbjct: 322 AATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKY 380

Query: 183 SSIFGLNMV-ESGSAVWEFLKGRMLPGVSALD 213
                ++ V   G A  E L+G+ LPGV+ L 
Sbjct: 381 GVTDKISHVSTGGGASLELLEGKELPGVAFLS 412

>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 86.3 bits (213), Expect = 4e-19
 Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 3   KLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGA 62
           K  E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+  
Sbjct: 180 KDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDR 239

Query: 63  NDAASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEE 121
            D A DL+  A    + +  P+D    +      +  +FP+  IP  +  +DIGP++ E 
Sbjct: 240 LDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREA 299

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
               +   + V W GP+       +  G      +   ++      TV+G     A    
Sbjct: 300 FARALEGARTVFWNGPMGVFEVPPFDEGTLA---VGQAIAALEGAFTVVGGGDSVAAVNR 356

Query: 182 SSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 213
                    V + G A  EFL+   LPG+  L+
Sbjct: 357 LGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 78.4 bits (192), Expect = 2e-17
 Identities = 34/205 (16%), Positives = 84/205 (40%), Gaps = 13/205 (6%)

Query: 211 ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC 270
           A+     +   W+  + +   P+ +++G+G G F+ GMA++  D+N++G+E+   ++   
Sbjct: 11  AISNPADYKGKWNTVFGND-NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69

Query: 271 RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL 330
              ++ S   N   +  +A +         PG++  V +   +P   +   + R+     
Sbjct: 70  VQKVKDSEAQNVKLLNIDADTLTDVF---EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHF 126

Query: 331 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 390
           ++   +++   G +  ++D   +     + F EYG            T  +         
Sbjct: 127 LKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL---------LLTYVSLDLHNSNLE 177

Query: 391 FGVRSDWEQHVIDRGAPMYRLMLSK 415
             + +++E+     G P+YR  +  
Sbjct: 178 GNIMTEYEEKFSALGQPIYRAEVEW 202

>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 78.6 bits (193), Expect = 2e-16
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              +L+  A    + I  P DF             +   + GIP GW  +D GP+S  + 
Sbjct: 261 IVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 320

Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
           +  + + K+++W GPV       ++ G   L   + K +   C +T+IG   +  C A  
Sbjct: 321 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGC-ITIIGGGDTATCCAKW 379

Query: 180 KVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
               ++  ++    G A  E L+G++LPGV AL 
Sbjct: 380 NTEDNVSHVST--GGGASLELLEGKVLPGVDALS 411

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 69.5 bits (169), Expect = 2e-14
 Identities = 33/200 (16%), Positives = 86/200 (43%), Gaps = 13/200 (6%)

Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 271
           +         W   + +   P+ V++GSG G F+ GMA++  D+N++G+++   ++++  
Sbjct: 14  VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 72

Query: 272 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 331
           D +   G+ N   +  + +           G++  + +   +P   +   + R+  ++ +
Sbjct: 73  DKVLEVGVPNIKLLWVDGSDLTDYF---EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFL 129

Query: 332 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSF 391
           +    +L  +G++  ++D   +       F +YG     +  D             +   
Sbjct: 130 DTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDL---------HASDFEG 180

Query: 392 GVRSDWEQHVIDRGAPMYRL 411
            V +++EQ   ++G  +YR+
Sbjct: 181 NVMTEYEQKFSNKGQVIYRV 200

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d1phpa_	394	Phosphoglycerate kinase {Bacillus stearothermophil	100.0
d1v6sa_	390	Phosphoglycerate kinase {Thermus thermophilus [Tax	100.0
d16pka_	415	Phosphoglycerate kinase {Trypanosoma brucei [TaxId	100.0
d1vpea_	398	Phosphoglycerate kinase {Thermotoga maritima [TaxI	100.0
d1ltka_	417	Phosphoglycerate kinase {Malaria parasite (Plasmod	100.0
d1qpga_	415	Phosphoglycerate kinase {Baker's yeast (Saccharomy	100.0
d1hdia_	413	Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId:	100.0
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	100.0
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	100.0
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.75
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.7
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.69
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.69
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.66
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.66
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.62
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.61
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.6
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.59
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.58
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.57
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.57
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.57
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.56
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.55
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.55
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.55
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.54
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.54
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.52
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.47
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.47
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.46
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.46
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.45
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.44
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.44
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.42
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.42
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.41
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.41
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.4
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.39
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.38
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.38
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.37
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.35
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.34
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.33
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.3
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.3
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.26
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.26
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.23
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.2
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.16
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.15
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.15
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.14
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.14
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.12
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.12
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.12
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.11
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.1
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.09
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.08
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.06
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.06
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.05
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.05
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.04
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.04
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.04
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.98
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.97
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.93
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.89
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.88
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.82
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.78
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.77
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.75
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.75
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.66
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.6
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.57
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.55
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.45
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.44
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.44
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.37
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.35
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.33
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.28
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.27
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.23
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.05
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.93
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.8
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.73
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.7
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.69
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.66
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.98
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.95
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.9
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.16
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.76
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.6
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.34
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.43
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.12
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.03
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.0
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.96
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.79
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.71
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.25
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.23
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.17
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.09
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.36
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.35
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.17
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.01
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.66
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.3
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	90.72
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	90.41
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	89.78
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	89.55
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.26
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.4
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	87.99
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	87.84
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.52
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	87.22
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	85.6
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	83.12
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.02
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	81.46
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	81.05

>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=9.4e-58  Score=455.09  Aligned_cols=208  Identities=26%  Similarity=0.492  Sum_probs=192.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||++|++|+++||+|++||+||||||+|+|++||+|++|++.++.|+++++.+++++++|+
T Consensus       182 l~~p~rP~~aIiGGaKisdKi~~i~~l~~k~D~i~igG~mantfl~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~  261 (394)
T d1phpa_         182 LSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFY  261 (394)
T ss_dssp             HHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             HhCCCCCeEEEEecCccccHHHHHHHHHhhcCeEEEcchHHHHHHHHcCCccCcccccchhHHHHHHHHHHHhhcCCccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+|++|+.+. ...+..++++++||++|+++||||+|++.|++.|..|+||+||||||+||.++|+.||.+|++++++.
T Consensus       262 lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmG~fE~~~F~~GT~~l~~~ia~~  341 (394)
T d1phpa_         262 MPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEA  341 (394)
T ss_dssp             CCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHC
T ss_pred             CCccchhhccccccccceEEEhhhccCCccccccCchHHHHHHHHHhhhceEEEecceeeeeccchhHHHHHHHHHHHhc
Confidence            99999999875 34455677899999999999999999999999999999999999999999999999999999999875


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      ++   .+|++||++   ++..+++.++++|+||  ||||+++||+|+.+|++++|.+
T Consensus       342 ~~---a~sivGGGdT~aai~~~g~~~~~shvST--GGGA~Le~L~G~~LPgi~aL~~  393 (394)
T d1phpa_         342 LD---TYSVIGGGDSAAAVEKFGLADKMDHIST--GGGASLEFMEGKQLPGVVALED  393 (394)
T ss_dssp             TT---CEEEECSHHHHHHHHHTTCGGGSSEECS--CTHHHHHHHTTCCCHHHHTSCB
T ss_pred             CC---CeEEEeCHHHHHHHHHcCCcCCCcEEec--CHHHHHHHHCCCCCchHHHhhc
Confidence            42   488888875   3346777788999999  9999999999999999999875

>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.8e-57  Score=449.42  Aligned_cols=207  Identities=27%  Similarity=0.456  Sum_probs=190.9

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||++|++|+++||+|++||+||||||+|+|++||+|++|++.++.++++++.+++++++|+
T Consensus       179 l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~~~~~~~~~~~~a~~~~~~i~  258 (390)
T d1v6sa_         179 LKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRVY  258 (390)
T ss_dssp             TSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             HhhccCceEEEEecccccchHHHHHHHHHhcceeeecccHHHHHHHHcCCccCcchhhhhhhhhhHhHHHhhhhhccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      +|+|++|..+. .+....++++++||++|+++||||+|++.|++.|..|+||+||||||+||.++|+.||++|+++++..
T Consensus       259 lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGvfE~~~F~~GT~~i~~aia~~  338 (390)
T d1v6sa_         259 LPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAAL  338 (390)
T ss_dssp             CCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTTSTTTTHHHHHHHHHHHTC
T ss_pred             cccceeecccccCCccccccchhhhhhhhhhhhhhhhhhHHHHHHhcccceEEEEccccccccCchhHHHHHHHHHHHhc
Confidence            99999999875 34455577899999999999999999999999999999999999999999999999999999999753


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~  213 (420)
                      .   +.+|++||++   ++..+++.++++|+||  ||||+++||+|+.+|++++|.
T Consensus       339 ~---~a~sIiGGGdT~aai~~~g~~~~fshVST--GGGA~Le~L~G~~LPgi~aL~  389 (390)
T d1v6sa_         339 E---GAFTVVGGGDSVAAVNRLGLKERFGHVST--GGGASLEFLEKGTLPGLEVLE  389 (390)
T ss_dssp             S---SCEEEEESHHHHHHHHTTTCGGGSSEECC--SSSHHHHHHHHSCCHHHHTTC
T ss_pred             C---CCEEEEeCHHHHHHHHHcCCcCCCcEEeC--CHHHHHHHHCCCCccchhhhc
Confidence            2   2488888875   3345677778999999  999999999999999999885

>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=5.1e-57  Score=453.48  Aligned_cols=211  Identities=27%  Similarity=0.483  Sum_probs=194.1

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|||||||||||.+|+||+++||+|++||+||||||+|+|++||+|++|++.++.|+++++.+++++++|+
T Consensus       200 l~~p~~P~~aIlGGaKisdKi~~i~~l~~k~D~iligG~~antfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~  279 (415)
T d16pka_         200 LGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVI  279 (415)
T ss_dssp             HSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             HhCCCcceEEEEeccccccHHHHHHHHHhhcceeeecchHHHHHHHHcCCcccccchhhhhhhhhhhhhhhhhcceeEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCCC-CCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014711           82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (420)
Q Consensus        82 lP~D~~~~~~~~-~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (420)
                      ||+|++|+.++. .....+++.++||++++++||||+|++.|++.|..|+||+||||||+||.++|+.||++|++++++.
T Consensus       280 lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~AktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~  359 (415)
T d16pka_         280 LPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRG  359 (415)
T ss_dssp             CCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHH
T ss_pred             eccceeeccccccccccccccccccccchHHHHHHHHhhhHHhHhhhhhceEEEecceeeeeccchhHHHHHHHHHHHHh
Confidence            999999998753 3334466788999999999999999999999999999999999999999999999999999999987


Q ss_pred             hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      +...+.+||+||++   ++..+++.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       360 t~~~~~~sivGGGdT~aai~~~g~~~~~~hvST--GGGA~L~~L~G~~LPgi~aL~~  414 (415)
T d16pka_         360 THEHGLMSIIGGGDSASAAELSGEAKRMSHVST--GGGASLELLEGKTLPGVTVLDD  414 (415)
T ss_dssp             HHHHCCEEEECSHHHHHHHHHTTCTTTSSEECS--CHHHHHHHHTTCCCHHHHTSCB
T ss_pred             hccCCCEEEECCHHHHHHHHHcCCccCCcEEEC--CHHHHHHHHCCCCcchHHHhhc
Confidence            64334588888875   3446788888999999  9999999999999999999875

>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.7e-56  Score=446.58  Aligned_cols=211  Identities=26%  Similarity=0.498  Sum_probs=192.1

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (420)
                      +++|+||+++|+|||||||||++|++|+++||+|++||+||||||+|+|++||+|++|++.++.++++++.+++++++|+
T Consensus       181 l~~~~~P~~aIlGGaKisdKi~~i~~L~~k~D~iiigG~~antfL~a~G~~iG~sl~e~~~~~~~~~i~~~a~~~~~~i~  260 (398)
T d1vpea_         181 TYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIV  260 (398)
T ss_dssp             HHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             hhcccCceEEEeecCccccHHHHHHHHHHhcceeeecchHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHhhhcCCccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCCC-CCceeEecC-CCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHh
Q 014711           82 YPKDFWCTKIHH-PNQVEIFPS-HGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK  159 (420)
Q Consensus        82 lP~D~~~~~~~~-~~~~~~~~~-~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~  159 (420)
                      ||+|++|..+.+ ..+...+.+ +.||++++++||||+|+++|++.|..|+||+||||||+||.++|+.||.+|++++++
T Consensus       261 lP~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGP~G~fE~~~F~~GT~~l~~~ia~  340 (398)
T d1vpea_         261 LPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAA  340 (398)
T ss_dssp             CCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHH
T ss_pred             cchheeecccccccccceeeccccCCCCcceeeccccchHHHHHHHhccCcEEEEEcccccccccchhHHHHHHHHHHHH
Confidence            999999998752 223334344 569999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccC
Q 014711          160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (420)
Q Consensus       160 ~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~  215 (420)
                      .+++++ +|++||++   ++..+++.++++|+||  ||||+|+||+|+.+|++++|..+
T Consensus       341 ~t~~~~-~sIiGGGdT~aai~~~g~~~~f~hvST--GGGA~Le~L~G~~LPgi~aL~~~  396 (398)
T d1vpea_         341 LTEKGA-ITVVGGGDSAAAVNKFGLEDKFSHVST--GGGASLEFLEGKELPGIASMRIK  396 (398)
T ss_dssp             HHHTTC-EEEEESHHHHHHHHHTTCGGGSSEEES--CHHHHHHHHTSSCCHHHHTSCBC
T ss_pred             HhcCCC-EEEEeCHHHHHHHHHcCCcCCceEEeC--CHHHHHHHHCCCCChHHHHHhhc
Confidence            876655 78888775   3346788788999999  99999999999999999999864

>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=3.8e-56  Score=446.92  Aligned_cols=209  Identities=25%  Similarity=0.465  Sum_probs=191.2

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHH-hcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMH-ALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~-a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      +++|+||+++|+|||||||||++|++|+++||+|++||+||||||+ |+|++||+|++|++.++.|++++++|++++++|
T Consensus       202 l~~~~kP~vaIlGGaKvsdKi~vi~~L~~k~D~iiigG~mantfL~~a~g~~ig~sl~e~~~~~~~~~i~~~a~~~~~~i  281 (417)
T d1ltka_         202 LENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQI  281 (417)
T ss_dssp             HTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESSHHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEE
T ss_pred             HhccccCceEEEecCCccchHHHHHHHHhhhceeeeehhhHHHHHHhccCCccCcccchhhHHHHHHHHHHHHHhcCCce
Confidence            4789999999999999999999999999999999999999999998 699999999999999999999999999999999


Q ss_pred             ecceeEEEecCCC-C-CceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014711           81 LYPKDFWCTKIHH-P-NQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (420)
Q Consensus        81 ~lP~D~~~~~~~~-~-~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (420)
                      +||+|++|+.+.. . ....+.+.++||++|+++||||+|++.|++.|..|+||+||||||+||.++|+.||.+|+++++
T Consensus       282 ~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~aktI~WNGP~GvfE~~~F~~GT~~l~~~i~  361 (417)
T d1ltka_         282 FLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVV  361 (417)
T ss_dssp             ECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             eeccceeeecccccCcccccccccccCCccceeeeccchhhhHHHHHhccCCEEEEECCcccccccchhHHHHHHHHHHH
Confidence            9999999998752 2 2333456788999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccc
Q 014711          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (420)
Q Consensus       159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~  213 (420)
                      +.+++++ +|++||++   ++..+++.++++|+||  ||||+|+||+|+.+|++++|.
T Consensus       362 ~~t~~~~-~sivGGGdT~aai~~~g~~~~~~hvST--GGGA~Le~L~G~~LPgieaL~  416 (417)
T d1ltka_         362 EVTKKGA-ITIVGGGDTASLVEQQNKKNEISHVST--GGGASLELLEGKELPGVLALS  416 (417)
T ss_dssp             HHHHTTC-EEEECCSTTHHHHHHHTCGGGSSEECC--CSHHHHHHHTTCCCHHHHTSC
T ss_pred             HHhhCCC-EEEEeCHHHHHHHHhcCCccCCeEEEc--CHHHHHHHHCCCCCcceeccc
Confidence            8776555 78888764   4456788888999999  999999999999999999886

>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-55  Score=441.57  Aligned_cols=211  Identities=25%  Similarity=0.456  Sum_probs=192.0

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHH-hcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMH-ALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~-a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      +++|+||+++|+|||||||||++|++|+++||+|++||+||||||+ ++|+++|+|++|++.++.|+++++++++++++|
T Consensus       198 l~~p~rP~vaIlGGaKvsdKi~vl~~l~~k~D~iiigG~mantflk~~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i  277 (415)
T d1qpga_         198 LENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEV  277 (415)
T ss_dssp             HSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             hcCCCCCeEEEEecCccccHHHHHHHHHhhcceEEeechhhHHHHHhccCCcccccccccccchhhhHHHHHHHhcCCeE
Confidence            5789999999999999999999999999999999999999999998 589999999999999999999999999999999


Q ss_pred             ecceeEEEecCCC--CCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014711           81 LYPKDFWCTKIHH--PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (420)
Q Consensus        81 ~lP~D~~~~~~~~--~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (420)
                      +||+|++|+.+..  .....+++.++||++|+++||||+|++.|.+.|..|+||+||||||+||.++|+.||.+|+++++
T Consensus       278 ~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~ia  357 (415)
T d1qpga_         278 VLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVV  357 (415)
T ss_dssp             ECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             eeeccEEEeeccccccccceeecccccCCcccccccchhhHHHHHHHhccCcEEEEECCcccccccchhhHHHHHHHHHH
Confidence            9999999987642  23334567889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccC
Q 014711          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (420)
Q Consensus       159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~  215 (420)
                      +++..++ ++|+||++   ++..+++.++++|+||  ||||+|+||+|+.+|++++|.+.
T Consensus       358 ~~~~~~~-~sivGGGdT~aai~~~g~~~~~~hvST--GGGA~L~~L~G~~LPgi~aL~~~  414 (415)
T d1qpga_         358 KSSAAGN-TVIIGGGDTATVAKKYGVTDKISHVST--GGGASLELLEGKELPGVAFLSEK  414 (415)
T ss_dssp             HHHHHTC-EEEECCHHHHHHHHHTTCGGGSSEECC--CTHHHHHHHTSCCCHHHHTSCBC
T ss_pred             HhccCCC-eEEEeCHHHHHHHHHcCCccCCceEeC--CHHHHHHHHCCCCCcHHHHHhhC
Confidence            9765433 78888775   4446788888999999  99999999999999999999753

>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.2e-55  Score=440.94  Aligned_cols=210  Identities=25%  Similarity=0.515  Sum_probs=191.1

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHh-cCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014711            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (420)
Q Consensus         2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a-~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (420)
                      +++|+||+++|+|||||||||++|+||+++||.|++||+||||||+| +|++||+|++|++.++.|+++++.+++++++|
T Consensus       197 l~~p~~P~vaIlGGaKvsdKi~vi~~L~~k~d~iiigGgmantfL~a~~g~~iG~sl~e~~~~~~~~~~~~~~~~~~~~i  276 (413)
T d1hdia_         197 AESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKI  276 (413)
T ss_dssp             HTSCCSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHHHHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEE
T ss_pred             hhCCCCcceEEEeccccccHHHHHHHHHhhhceeeecchhHHHHHHHhcCCccccccchhhhhhhHHHHHHHHHHcCCcc
Confidence            46899999999999999999999999999999999999999999998 79999999999999999999999999999999


Q ss_pred             ecceeEEEecCCCC-Cc-eeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014711           81 LYPKDFWCTKIHHP-NQ-VEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (420)
Q Consensus        81 ~lP~D~~~~~~~~~-~~-~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (420)
                      +||+|++|+.+... .. ......++||++++++||||+|++.|++.|..|+||+||||||+||.++|+.||.+|+++++
T Consensus       277 ~lp~d~~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~~ia  356 (413)
T d1hdia_         277 TLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVV  356 (413)
T ss_dssp             ECCCEEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             ccccceeecccccccccccccccccccCCCceeecccchhhHHHHHHhccCCEEEEECCcccccCcchhHHHHHHHHHHH
Confidence            99999999987522 22 22345678999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014711          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (420)
Q Consensus       159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~  214 (420)
                      +++..++ +|++||++   ++..+++.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       357 ~~~~~~a-~sivGGGdT~aai~~~g~~~~~~hvST--GGGA~L~~L~G~~LPgi~aL~~  412 (413)
T d1hdia_         357 KATSRGC-ITIIGGGDTATCCAKWNTEDNVSHVST--GGGASLELLEGKVLPGVDALSN  412 (413)
T ss_dssp             HHHHTTC-EEEECTTHHHHHHHHTTCTTTSSEECS--CHHHHHHHHTTCCCHHHHTSCB
T ss_pred             HhhcCCC-EEEEeCHHHHHHHHHcCCcCCCcEEeC--CHHHHHHHHCCCCcchhhhhhc
Confidence            9875544 78888875   4456788888999999  9999999999999999999864

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=3.3e-38  Score=289.67  Aligned_cols=183  Identities=18%  Similarity=0.393  Sum_probs=165.9

Q ss_pred             ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc
Q 014711          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~  298 (420)
                      ...|.+.|++ ++|+|||||||+|.++..+|+.+|+.+|+|+|+++.++..|.+++.+.+++|++++++|+..+. +.+ 
T Consensus        21 ~~~w~~~f~~-~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~-~~~-   97 (204)
T d1yzha1          21 KAKWRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT-DYF-   97 (204)
T ss_dssp             TTTHHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG-GTS-
T ss_pred             hccHHHHcCC-CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh-hhc-
Confidence            4679999987 6899999999999999999999999999999999999999999999999999999999999874 455 


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecccccc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  378 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~  378 (420)
                       ++.++|.|+++|||||+|++|+++|++++++|+.++++|||||.|+++||++.|++++++.+.++++.......|.+  
T Consensus        98 -~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~~~~~~~--  174 (204)
T d1yzha1          98 -EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLH--  174 (204)
T ss_dssp             -CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG--
T ss_pred             -cCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccccccccc--
Confidence             58899999999999999999999999999999999999999999999999999999999999999887655555533  


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEE
Q 014711          379 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLS  414 (420)
Q Consensus       379 ~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~  414 (420)
                         .    .+....+.|+||+++.++|++||++.|+
T Consensus       175 ---~----~~~~~~~~T~yE~k~~~~G~~Iy~l~~~  203 (204)
T d1yzha1         175 ---A----SDFEGNVMTEYEQKFSNKGQVIYRVEAE  203 (204)
T ss_dssp             ---G----SCCCCCCCCHHHHHTGGGCCCCEEEEEE
T ss_pred             ---c----cccCCCCCCHHHHHHHHcCCCeEEEEEE
Confidence               2    2334567899999999999999999987

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.8e-38  Score=290.15  Aligned_cols=186  Identities=18%  Similarity=0.393  Sum_probs=169.7

Q ss_pred             cccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhh
Q 014711          218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       218 ~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~  297 (420)
                      +..+|.+.|++ ++|+|||||||+|.+++.||+++|+.+|+|+|+++.++..|.+++.+.+++|++++++|+..++ +.+
T Consensus        18 ~~~~w~~~F~~-~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~-~~~   95 (204)
T d2fcaa1          18 YKGKWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-DVF   95 (204)
T ss_dssp             GTTCHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-HHC
T ss_pred             HHhHHHHHcCC-CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh-ccc
Confidence            56689999997 6899999999999999999999999999999999999999999999999999999999999874 445


Q ss_pred             ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccc
Q 014711          298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECD  377 (420)
Q Consensus       298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~  377 (420)
                        +++++|.|+++||+||+|++|+++|++++.+|+.++++|||||.|++.||++.|+++|.+.+.+++++......|.|.
T Consensus        96 --~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~~~~~~d~~~  173 (204)
T d2fcaa1          96 --EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDLHN  173 (204)
T ss_dssp             --CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGGG
T ss_pred             --CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCccccCChhhcc
Confidence              588999999999999999999999999999999999999999999999999999999999999999876666666542


Q ss_pred             cccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014711          378 TKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  416 (420)
Q Consensus       378 ~~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~  416 (420)
                               ...+..+.|+||+++.++|++||++.+++.
T Consensus       174 ---------~~~~~~~~T~yE~k~~~~G~~iy~~~~~~~  203 (204)
T d2fcaa1         174 ---------SNLEGNIMTEYEEKFSALGQPIYRAEVEWR  203 (204)
T ss_dssp             ---------SSCTTCCCCTTGGGSSSSSCCCEEEEEECC
T ss_pred             ---------cCCCCCCCCHHHHHHHHcCCCeEEEEEEEe
Confidence                     233456789999999999999999999874

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=7.8e-18  Score=157.46  Aligned_cols=160  Identities=12%  Similarity=0.038  Sum_probs=130.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHh-CCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~-~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||+|||+|.++..||+. .|+.+|+++|+++++++.|++++.+. +..|+.+.++|+.+.+      ++.+||.|
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~------~~~~fD~V  158 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI------SDQMYDAV  158 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC------CSCCEEEE
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc------ccceeeee
Confidence            4789999999999999999987 68899999999999999999999875 5679999999997752      47789999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCC
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  387 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~  387 (420)
                      +++.|+||             ++++.+.++|||||+|++.+.+-.+...+.+.++++||...++.+-     +++ .|. 
T Consensus       159 ~ld~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~~E~-----~~R-~~~-  218 (250)
T d1yb2a1         159 IADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVEL-----MKR-RIL-  218 (250)
T ss_dssp             EECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEE-----EEC-CCC-
T ss_pred             eecCCchH-------------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEEEEE-----EeE-EEE-
Confidence            99999998             7899999999999999998877777888899999999876554432     121 242 


Q ss_pred             CCCCCCCCHHHHHHHHCCCCeEEEEEEeCCCC
Q 014711          388 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV  419 (420)
Q Consensus       388 ~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~~~  419 (420)
                      ..+...+...+.    .||+-|-+.+||.+++
T Consensus       219 ~~~~~~RP~~~m----vgHTgfl~~arK~~g~  246 (250)
T d1yb2a1         219 VREGATRPASDD----LTHTAFITFAIKKSGM  246 (250)
T ss_dssp             CCTTCCCCGGGG----SCEEEEEEEEEECCSC
T ss_pred             EcCCccCCCCCC----ccchhhhhhhcccCCC
Confidence            222334444443    7899999999998754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=6e-17  Score=152.42  Aligned_cols=159  Identities=16%  Similarity=0.221  Sum_probs=124.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHh---CCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~---~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+|||+|||+|.++..||+. .|+.+++++|+++++++.|+++++..   ...|+.+.++|+.+.     ++++++||
T Consensus        96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-----~~~~~~fD  170 (264)
T d1i9ga_          96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-----ELPDGSVD  170 (264)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-----CCCTTCEE
T ss_pred             CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-----cccCCCcc
Confidence            4789999999999999999998 79999999999999999999998764   257999999999865     22588999


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHH-HcCCceeEeeccccccccCCCC
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL-EYGKGKLVLVQDECDTKTNQGG  384 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~-~~g~~~~~~~~D~~~~~~~~~~  384 (420)
                      .|++..|+||             .+++.+.++|||||++++.+.+-.+...+.+.++ +.+|..+++.+=     +++ .
T Consensus       171 aV~ldlp~P~-------------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E~-----l~R-~  231 (264)
T d1i9ga_         171 RAVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWET-----LQR-G  231 (264)
T ss_dssp             EEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECC-----CCC-C
T ss_pred             eEEEecCCHH-------------HHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceEEEE-----EEE-E
Confidence            9999999999             7899999999999999999988888888888886 445655444322     121 2


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014711          385 WLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  417 (420)
Q Consensus       385 ~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~  417 (420)
                      |... +...++..    +-.|++-|-+.+||++
T Consensus       232 ~~v~-~~~~RP~~----~~vgHTgfl~~ark~~  259 (264)
T d1i9ga_         232 WNVV-GLAVRPQH----SMRGHTAFLVATRRLA  259 (264)
T ss_dssp             EEEE-TTEEEECS----CCCCCSCEEEEEEBCC
T ss_pred             EEec-cCeeCCCC----CCccchHHHhhhhhcc
Confidence            3211 11111110    1268889999999876

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1.5e-16  Score=150.14  Aligned_cols=159  Identities=11%  Similarity=0.099  Sum_probs=126.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||+|||+|.++..||+. .|..+++++|+|+++++.|++++.+.++ .|+.+...|+...    +  ....+|.|
T Consensus       103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~----~--~~~~~D~V  176 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----F--DEKDVDAL  176 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----C--SCCSEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc----c--cccceeee
Confidence            4789999999999999999988 5889999999999999999999999997 5799999997553    2  46789999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCC
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  387 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~  387 (420)
                      ++..|+||             ++++.+.++|||||+|++.+....+.+.+.+.++++||...++.+-     +.+ .|..
T Consensus       177 ~~d~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~E~-----l~R-~~~~  237 (266)
T d1o54a_         177 FLDVPDPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWES-----LFR-PYKP  237 (266)
T ss_dssp             EECCSCGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECC-----CCC-CEEC
T ss_pred             EecCCCHH-------------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEEEE-----EEE-EEEe
Confidence            99999998             7999999999999999988888888888999999999876655432     111 2321


Q ss_pred             CCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014711          388 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  418 (420)
Q Consensus       388 ~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~~  418 (420)
                       .+...+....    ..|++-|-+.+||+..
T Consensus       238 -~~~~vRP~~~----~vgHTgfl~~ark~~~  263 (266)
T d1o54a_         238 -VPERLRPVDR----MVAHTAYMIFATKVCR  263 (266)
T ss_dssp             -CTTSCEECSC----CCCCSCEEEEEEECSC
T ss_pred             -cCCccCCCCC----CcchHHHHHHheeccc
Confidence             1111211111    2488889999999864

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.6e-16  Score=150.33  Aligned_cols=137  Identities=18%  Similarity=0.232  Sum_probs=113.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|++++.+|+.+|+.+++|+|+|+.+++.|++|+++++++|+.|+++|..+.+      .+..||.|++
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~------~~~~fDlIvs  181 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL------AGQQFAMIVS  181 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG------TTCCEEEEEE
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc------CCCceeEEEe
Confidence            4678999999999999999999999999999999999999999999999999999999987642      3568999999


Q ss_pred             eCCCCCCCCc-----------chhhh--------hhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRP-----------EHRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~-----------~~k~R--------l~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      |  .|+....           +++..        .+...++..+.+.|+|||.++++.+. .+.+.+.+.++++||..+.
T Consensus       182 N--PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-~q~~~v~~~l~~~gf~~i~  258 (274)
T d2b3ta1         182 N--PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-QQGEAVRQAFILAGYHDVE  258 (274)
T ss_dssp             C--CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-SCHHHHHHHHHHTTCTTCC
T ss_pred             c--chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-hHHHHHHHHHHHCCCCeEE
Confidence            8  4543322           11111        12367999999999999999999865 3467788999999998777


Q ss_pred             eeccc
Q 014711          371 LVQDE  375 (420)
Q Consensus       371 ~~~D~  375 (420)
                      +.+|.
T Consensus       259 ~~kDl  263 (274)
T d2b3ta1         259 TCRDY  263 (274)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            77883

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=2.8e-16  Score=144.87  Aligned_cols=103  Identities=23%  Similarity=0.332  Sum_probs=88.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..|+++.  .+++|+|+|+.|++.|++++...+++|+.++++|+.++     ++++++||.|++
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~   88 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-----PFPDDSFDIITC   88 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccc-----cccccccceeee
Confidence            47899999999999999999985  58999999999999999999999999999999999875     236889999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .+.-.|..+.        ..+++++.++|||||++++.
T Consensus        89 ~~~l~~~~d~--------~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          89 RYAAHHFSDV--------RKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEE
T ss_pred             eceeecccCH--------HHHHHHHHHeeCCCcEEEEE
Confidence            7544443221        38999999999999999884

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.66  E-value=7.2e-16  Score=141.03  Aligned_cols=104  Identities=15%  Similarity=0.272  Sum_probs=87.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..++++.  .+++|+|+|+.|++.|++++...+.+|+.|+++|+.++     ++++++||.|++
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l-----~~~~~~fD~v~~   87 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-----PFTDERFHIVTC   87 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-----CSCTTCEEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccc-----cccccccccccc
Confidence            46899999999999999999885  58999999999999999999999999999999999886     235889999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...--|..+.        ..+++++.++|||||++++.+
T Consensus        88 ~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          88 RIAAHHFPNP--------ASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccCCH--------HHHHHHHHHhcCCCcEEEEEe
Confidence            7432222111        379999999999999999853

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.62  E-value=5.6e-15  Score=131.69  Aligned_cols=121  Identities=16%  Similarity=0.249  Sum_probs=99.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.+++.+|+..  .+|+|+|+++.+++.|++|++++++. |++++++|+.+.+.     ....+|.|+
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~-----~~~~~D~v~  105 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC-----KIPDIDIAV  105 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT-----TSCCEEEEE
T ss_pred             CCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc-----ccCCcCEEE
Confidence            47899999999999999999874  58999999999999999999999985 89999999987732     457899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                      +..+..     +      .+++++.+.+.|||||++++..-..+......+.+..+++..
T Consensus       106 ~~~~~~-----~------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~  154 (186)
T d1l3ia_         106 VGGSGG-----E------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDV  154 (186)
T ss_dssp             ESCCTT-----C------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCC
T ss_pred             EeCccc-----c------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCe
Confidence            863221     1      147899999999999999887655555566778888887754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.6e-15  Score=140.65  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=87.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..++++++ ..++|+|+|+.+++.|++++...++.+ ++|+++|+.++.      ++++||.|+
T Consensus        33 pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~------~~~~fD~v~  105 (245)
T d1nkva_          33 PGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV------ANEKCDVAA  105 (245)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC------CSSCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc------ccCceeEEE
Confidence            578999999999999999998765 799999999999999999999999864 999999998762      478999998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +...--|..+.        ..++++++++|||||++++.
T Consensus       106 ~~~~~~~~~d~--------~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_         106 CVGATWIAGGF--------AGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             EESCGGGTSSS--------HHHHHHHTTSEEEEEEEEEE
T ss_pred             EEehhhccCCH--------HHHHHHHHHHcCcCcEEEEE
Confidence            76433222111        38999999999999999985

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.9e-15  Score=138.26  Aligned_cols=129  Identities=10%  Similarity=0.121  Sum_probs=98.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++++...+..|++|+++|+.++     +..+++||.|++
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~-----~~~~~~fD~I~~  133 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-----TPEPDSYDVIWI  133 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-----CCCSSCEEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccccccccccccccccc-----cccccccccccc
Confidence            467899999999999999887765 48999999999999999999888888999999999886     225789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH--------------HHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------------EVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~--------------~~~~~~~~~l~~~g~~~~~  370 (420)
                      .+.-.+..+.      ....++++++++|||||.|++.....              ...+.+.+.+++.|+..+.
T Consensus       134 ~~~l~h~~~~------~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~  202 (222)
T d2ex4a1         134 QWVIGHLTDQ------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  202 (222)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             ccccccchhh------hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence            7533221111      01379999999999999999852100              0134566677777776544

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=2.3e-15  Score=136.51  Aligned_cols=105  Identities=17%  Similarity=0.225  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..+|+.  ..+++|+|+|+.|++.|++++...+. ++.++++|+.++     +.++++||.|++
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l-----~~~~~~fD~I~~  108 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKL-----SFEDKTFDYVIF  108 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc-cccccccccccc-----cccCcCceEEEE
Confidence            4678999999999999999986  67899999999999999999887764 578899999886     235789999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .+.-.|....+      ...+|+++.++|||||++++.+
T Consensus       109 ~~~l~~~~~~d------~~~~l~~i~~~LkpgG~lii~~  141 (226)
T d1ve3a1         109 IDSIVHFEPLE------LNQVFKEVRRVLKPSGKFIMYF  141 (226)
T ss_dssp             ESCGGGCCHHH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecchhhCChhH------HHHHHHHHHHHcCcCcEEEEEE
Confidence            75433321111      1378999999999999998865

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.58  E-value=4.8e-15  Score=140.41  Aligned_cols=104  Identities=13%  Similarity=0.034  Sum_probs=87.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..||+++ +.+|+|+|+|+.+++.|++++...|+. |++|+++|+.++     ++++++||.|+
T Consensus        67 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-----~~~~~sfD~V~  140 (282)
T d2o57a1          67 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-----PCEDNSYDFIW  140 (282)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccc-----cccccccchhh
Confidence            57899999999999999999875 679999999999999999999999986 799999999886     33678999998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +...-.+..+  +      ..+++++.++|||||+|++.
T Consensus       141 ~~~~l~h~~d--~------~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         141 SQDAFLHSPD--K------LKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             EESCGGGCSC--H------HHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhhccC--H------HHHHHHHHHhcCCCcEEEEE
Confidence            7632222111  1      37999999999999999885

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.1e-15  Score=141.70  Aligned_cols=126  Identities=13%  Similarity=0.111  Sum_probs=103.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhC-----------CCcEEEEEcChhhhhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSG-----------ITNGYFIATNATSTFRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~-----------l~nv~~~~~Da~~~~~~~~  297 (420)
                      ++.+|||+|||+|.++..||+. .|+.+|+++|+++++++.|++|+++.+           ..|+.+.+.|+...... +
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~-~  176 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED-I  176 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc-c
Confidence            4789999999999999999998 699999999999999999999987642           35899999999765221 2


Q ss_pred             ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHc--CCceeEe
Q 014711          298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY--GKGKLVL  371 (420)
Q Consensus       298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~--g~~~~~~  371 (420)
                        .+.+||.|++..|+||             ..+.++.++|||||.|++-+.+-.+.....+.++..  +|..+++
T Consensus       177 --~~~~fD~V~LD~p~P~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~  237 (324)
T d2b25a1         177 --KSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKI  237 (324)
T ss_dssp             ------EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             --CCCCcceEeecCcCHH-------------HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEE
Confidence              4678999999999999             789999999999999998888877888888888754  4544443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=7.3e-15  Score=137.45  Aligned_cols=122  Identities=15%  Similarity=0.269  Sum_probs=97.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.+++.+++.  ..+++|+|+|+.+++.|++|++.++++ ++++++|+.+.+      +.++||.|++
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~-~~~~~~d~~~~~------~~~~fD~V~a  190 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAAL------PFGPFDLLVA  190 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHG------GGCCEEEEEE
T ss_pred             ccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCc-eeEEeccccccc------cccccchhhh
Confidence            4789999999999999988876  568999999999999999999999885 588999987652      3678999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +...+           ...++++.+.++|||||+|++.--.....+.+.+.++++|+.....
T Consensus       191 ni~~~-----------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         191 NLYAE-----------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             ECCHH-----------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             ccccc-----------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEE
Confidence            73211           1247889999999999999984212334567888999999876543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.57  E-value=1.6e-14  Score=129.47  Aligned_cols=119  Identities=14%  Similarity=0.253  Sum_probs=92.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc--EEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n--v~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.+|||+|||+|.+++.+|+..|  +++|+|+|+.+++.|++++..++++|  ++++++|+.+.    +  ++++||.|
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~----~--~~~~fD~I  123 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN----V--KDRKYNKI  123 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT----C--TTSCEEEE
T ss_pred             CCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh----h--ccCCceEE
Confidence            578999999999999999998865  79999999999999999999988864  99999998654    2  47799999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHH
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  363 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~  363 (420)
                      +++  .|++...     -....+++.+.+.|||||.+++........+.+...+++
T Consensus       124 i~~--~p~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~  172 (194)
T d1dusa_         124 ITN--PPIRAGK-----EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD  172 (194)
T ss_dssp             EEC--CCSTTCH-----HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH
T ss_pred             EEc--ccEEecc-----hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHH
Confidence            986  3432211     122478999999999999998876544444444444444

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=8.5e-15  Score=133.97  Aligned_cols=105  Identities=15%  Similarity=0.247  Sum_probs=84.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~  306 (420)
                      ++.+|||||||+|..+..|++.  .|+.+|+|+|+|+.|++.|++++...+. .++.+.++|+.++       +...+|.
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~d~  111 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-------EIKNASM  111 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-------CCCSEEE
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-------cccccee
Confidence            4689999999999999999986  5899999999999999999999877664 4689999998765       3556788


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +++.+.-.|....+      ...+|+++++.|||||.|++.
T Consensus       112 i~~~~~l~~~~~~d------~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         112 VILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             EEEESCGGGSCGGG------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEeeeccccChhh------HHHHHHHHHHhCCCCceeecc
Confidence            87775443321111      137999999999999999985

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.55  E-value=4.7e-14  Score=128.15  Aligned_cols=126  Identities=14%  Similarity=0.102  Sum_probs=93.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|..+..+|+..|+..|+|+|+|+.|++.|++++++.  +|+.++..|+.... ... .....+|.++.
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~-~~~-~~~~~vd~v~~  131 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPW-KYS-GIVEKVDLIYQ  131 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGG-GTT-TTCCCEEEEEE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCcc-ccc-cccceEEEEEe
Confidence            578999999999999999999999999999999999999999998765  59999999998752 211 12345666655


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-----C----cHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----D----IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-----d----~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      .++.|+          ....+++++.+.|||||++++..     |    ....+....+.++ .+|...+
T Consensus       132 ~~~~~~----------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~E  190 (209)
T d1nt2a_         132 DIAQKN----------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIVK  190 (209)
T ss_dssp             CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEEE
T ss_pred             cccChh----------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEEE
Confidence            444332          12478999999999999998853     2    2333444444443 5776654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.55  E-value=1.5e-14  Score=129.87  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=87.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||||||+|..+..|+++  ..+++|+|+|+.+++.|++++.+.+++|+.+.+.|+..+.      .+++||.|++.
T Consensus        31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD~I~~~  102 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT------FDGEYDFILST  102 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC------CCCCEEEEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc------ccccccEEEEe
Confidence            458999999999999999998  5689999999999999999999999999999999998762      47889999987


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +.-.+....      ...++++++.++|+|||++++.+
T Consensus       103 ~~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         103 VVMMFLEAQ------TIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             SCGGGSCTT------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeeecCCHH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence            532221111      12479999999999999999865

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=1.2e-14  Score=134.39  Aligned_cols=107  Identities=15%  Similarity=0.241  Sum_probs=85.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +..+|||||||+|.++..|+++  ..+++|+|+|+.|++.|++++.+.++ ++.++++|+.++.      .++.||.|++
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~------~~~~fD~I~~  111 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIA------FKNEFDAVTM  111 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCC------CCSCEEEEEE
T ss_pred             CCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc-cchheehhhhhcc------cccccchHhh
Confidence            4678999999999999999997  46899999999999999999988776 6999999998871      3568999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      .+.--.+-.  ..   -...+|++++++|||||+|++...+
T Consensus       112 ~~~~~~~~~--~~---~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         112 FFSTIMYFD--EE---DLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             CSSGGGGSC--HH---HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhhhcCC--hH---HHHHHHHHHHHHcCCCcEEEEEecc
Confidence            642211100  01   1137999999999999999986543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=6.7e-15  Score=138.77  Aligned_cols=106  Identities=15%  Similarity=0.213  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.++..|++..|+.+++|+|+|+.|++.|+++     .+|+.|+++|+.++     ++++++||.|+.
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l-----~~~~~sfD~v~~  153 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRL-----PFSDTSMDAIIR  153 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSC-----SBCTTCEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----cccccceeeehhhc-----cCCCCCEEEEee
Confidence            56899999999999999999999999999999999999998775     35899999999876     336899999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHH
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ  360 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~  360 (420)
                      .+. |.              .++++.|+|||||+|++.+.++.+..++.+.
T Consensus       154 ~~~-~~--------------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~  189 (268)
T d1p91a_         154 IYA-PC--------------KAEELARVVKPGGWVITATPGPRHLMELKGL  189 (268)
T ss_dssp             ESC-CC--------------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTT
T ss_pred             cCC-HH--------------HHHHHHHHhCCCcEEEEEeeCCcchHHHHHH
Confidence            753 32              2467899999999999998666655444443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.54  E-value=1.2e-14  Score=134.61  Aligned_cols=109  Identities=12%  Similarity=0.162  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.++..|+++.  .+++|+|+|+.|++.|++++...+. |++|+++|+.++.      .+++||.|++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~------~~~~fD~i~~  107 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLN------INRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCC------CSCCEEEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCc-cceeeccchhhhc------ccccccccce
Confidence            45789999999999999999984  5899999999999999999887776 7999999998761      3668999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      .+..-. .-.+...+   ..+++.+++.|||||.|++...+.
T Consensus       108 ~~~~~~-~~~~~~~~---~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_         108 CLDSTN-YIIDSDDL---KKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CTTGGG-GCCSHHHH---HHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             eeeeee-ccCCHHHH---HHHHHHHHHhCCCCeEEEEEeCCH
Confidence            532111 00111111   379999999999999999865443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=1.3e-13  Score=127.08  Aligned_cols=128  Identities=13%  Similarity=0.007  Sum_probs=96.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||+|||+|.++.++|+..|+..|+|+|+|+.|++.+++++.+  .+|+.++..|+.... .+   .+..+|.+++
T Consensus        74 pG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~--~~ni~~i~~d~~~~~-~~---~~~~~~v~~i  147 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQ-EY---ANIVEKVDVI  147 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGG-GG---TTTCCCEEEE
T ss_pred             CCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh--hcccceEEEeeccCc-cc---ccccceeEEe
Confidence            57899999999999999999999999999999999999999998764  458889999998763 22   2334444333


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---------CcHHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---------d~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                      +..-.++.        -...++.++.+.|||||.+++..         +....+++..+.|++.||...+.
T Consensus       148 ~~~~~~~~--------~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~  210 (230)
T d1g8sa_         148 YEDVAQPN--------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE  210 (230)
T ss_dssp             EECCCSTT--------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             eccccchH--------HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            21111211        11368999999999999998852         33455677888899999876543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.47  E-value=1.2e-13  Score=128.56  Aligned_cols=114  Identities=14%  Similarity=0.116  Sum_probs=86.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||||||+|..+..+++.. ..+|+|+|+|+.|++.|++++...+.. ++.|.++|+....   +. .+.+||.|+
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~---~~-~~~~fD~V~   98 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH---MD-LGKEFDVIS   98 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC---CC-CSSCEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc---cc-ccccceEEE
Confidence            46899999999999999998873 358999999999999999998776654 7999999996541   11 367899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  352 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~  352 (420)
                      +++.--|....  ..  ....+++.+.++|||||+|++.+.+.+
T Consensus        99 ~~~~l~~~~~~--~~--~~~~~l~~i~~~Lk~gG~~i~~~~~~~  138 (252)
T d1ri5a_          99 SQFSFHYAFST--SE--SLDIAQRNIARHLRPGGYFIMTVPSRD  138 (252)
T ss_dssp             EESCGGGGGSS--HH--HHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EcceeeecCCC--HH--HHHHHHHHHhceeCCCCEEEEEecCHH
Confidence            87543321110  00  114789999999999999998764433

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=7.1e-14  Score=128.14  Aligned_cols=95  Identities=17%  Similarity=0.246  Sum_probs=77.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..|++.  ..+++|+|+|+.|++.|+++.    ..  .++++|+.++     ++++++||.|++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~----~~--~~~~~~~~~l-----~~~~~~fD~ii~  108 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG----VK--NVVEAKAEDL-----PFPSGAFEAVLA  108 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT----CS--CEEECCTTSC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc----cc--cccccccccc-----ccccccccceee
Confidence            4678999999999999999987  679999999999999998763    22  2568888876     235789999986


Q ss_pred             eC------CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          310 QC------PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       310 ~f------pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      .+      |||             .++|+++.++|||||.|++.+.+
T Consensus       109 ~~~~~~~~~d~-------------~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         109 LGDVLSYVENK-------------DKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             CSSHHHHCSCH-------------HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ecchhhhhhhH-------------HHHHHHHHhhcCcCcEEEEEECC
Confidence            43      233             37899999999999999997644

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-13  Score=126.95  Aligned_cols=109  Identities=11%  Similarity=-0.026  Sum_probs=85.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||||||+|.++..+++..| .+++|||+|+.+++.|++++...+ .++.++..|+...... +  ++++||.|++
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~-~--~~~~fD~i~f  127 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT-L--PDGHFDGILY  127 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG-S--CTTCEEEEEE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcc-cccccccccccccccc-c--ccccccceee
Confidence            477999999999999999998755 589999999999999999987654 4688899999876432 2  5789999976


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                         |.+....+..+....+.++++++++|||||+|.+
T Consensus       128 ---D~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         128 ---DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             ---CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ---cccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence               3333232222223345799999999999999987

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.46  E-value=1.2e-13  Score=130.78  Aligned_cols=104  Identities=15%  Similarity=0.243  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..+++..|. .+|+|+|+|+.+++.|++++...+. |++|.++|+.++     + .+++||.|+
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~-----~-~~~~fD~v~   99 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEI-----E-LNDKYDIAI   99 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTC-----C-CSSCEEEEE
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccc-----c-ccCCceEEE
Confidence            4578999999999999999998875 7899999999999999999877665 799999999875     1 256799999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +++.-.|..+  +      ..+++++.++|||||.+++..
T Consensus       100 ~~~~l~~~~d--~------~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         100 CHAFLLHMTT--P------ETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EESCGGGCSS--H------HHHHHHHHHTEEEEEEEEEEE
T ss_pred             EehhhhcCCC--H------HHHHHHHHHHcCcCcEEEEEE
Confidence            8753222211  1      378999999999999998754

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.45  E-value=4.5e-14  Score=124.88  Aligned_cols=108  Identities=8%  Similarity=-0.039  Sum_probs=82.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC------------CcEEEEEcChhhhhhhh
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI------------TNGYFIATNATSTFRSI  296 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l------------~nv~~~~~Da~~~~~~~  296 (420)
                      +++.+|||+|||+|..+..||++  +.+|+|+|+|+.|++.|++++...+.            .++.|+++|+.++.+. 
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~-   95 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR-   95 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH-
T ss_pred             CCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc-
Confidence            35789999999999999999998  78999999999999999998854332            3467888888776321 


Q ss_pred             hccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          297 VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       297 ~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                         ...++|.|+..+.-.+...      .....+++.++++|||||.+++.+
T Consensus        96 ---~~~~~D~i~~~~~l~~l~~------~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          96 ---DIGHCAAFYDRAAMIALPA------DMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             ---HHHSEEEEEEESCGGGSCH------HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ---cccceeEEEEEeeeEecch------hhhHHHHHHHHHhcCCCcEEEEEE
Confidence               2457899987643322111      112478999999999999988764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.44  E-value=2.9e-13  Score=126.38  Aligned_cols=105  Identities=18%  Similarity=0.236  Sum_probs=83.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+|||+|||+|.++..|+..+.+ .|+|+|+|+.|++.|+++..  +.++++|+++|+.++     +..+++||.|++
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~-----~~~~~~fD~I~~  164 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETA-----TLPPNTYDLIVI  164 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGC-----CCCSSCEEEEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhcccc--ccccceeEEcccccc-----ccCCCccceEEe
Confidence            4678999999999999999887644 89999999999999998864  446799999999876     225789999999


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      .+.-.|..+.      ....+|+++.+.|||||+|++..
T Consensus       165 ~~vl~hl~d~------d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         165 QWTAIYLTDA------DFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccccccchh------hhHHHHHHHHHhcCCCcEEEEEe
Confidence            8533221110      11378999999999999999853

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=4.2e-13  Score=127.13  Aligned_cols=104  Identities=14%  Similarity=0.200  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||.|.++..++++++ ++|+|+|+|+++++.|++++.+.++. ++.+...|..++        +++||.|+
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--------~~~fD~i~  122 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------AEPVDRIV  122 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--------CCCCSEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--------ccchhhhh
Confidence            578999999999999999988874 69999999999999999999998875 588888887653        66899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +...-.+...+      -.+.+++.++++|||||++++.+
T Consensus       123 si~~~eh~~~~------~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         123 SIEAFEHFGHE------NYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             EESCGGGTCGG------GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HhhHHHHhhhh------hHHHHHHHHHhccCCCceEEEEE
Confidence            76322111111      12589999999999999999864

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=2.9e-13  Score=123.18  Aligned_cols=101  Identities=17%  Similarity=0.190  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||+|.++..||+.. |+..|+++|+++.+++.|++++.+.++.|+.++++|+.+.+.     .+++||.|+
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~-----~~~~fD~I~  149 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-----EFSPYDVIF  149 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEE
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc-----cccchhhhh
Confidence            47899999999999999999984 788999999999999999999999999999999999987532     356899999


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +.+.-++              +.+.+.+.|||||++++-..
T Consensus       150 ~~~~~~~--------------~p~~l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         150 VTVGVDE--------------VPETWFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             ECSBBSC--------------CCHHHHHHEEEEEEEEEEBC
T ss_pred             hhccHHH--------------hHHHHHHhcCCCcEEEEEEC
Confidence            8753322              12345678999999988543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=7.4e-13  Score=125.64  Aligned_cols=104  Identities=16%  Similarity=0.210  Sum_probs=84.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||.|.+++.+|+.+ +++|+||.+|+..++.|++++.+.++. ++++..+|..++        +++||.|+
T Consensus        62 ~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--------~~~fD~i~  132 (285)
T d1kpga_          62 PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------DEPVDRIV  132 (285)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--------CCCCSEEE
T ss_pred             CCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--------ccccccee
Confidence            58999999999999999999998 589999999999999999998887764 699999998765        56788887


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ....-.+...+      -.+.+++++.++|||||++++.+
T Consensus       133 si~~~eh~~~~------~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         133 SIGAFEHFGHE------RYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             EESCGGGTCTT------THHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eehhhhhcCch------hHHHHHHHHHhhcCCCCcEEEEE
Confidence            65322221111      12479999999999999999864

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=1.1e-12  Score=124.93  Aligned_cols=106  Identities=12%  Similarity=0.155  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||||||.|.++..+|++++ ++++|+++|++.++.|++++...++.+ +.+...|...        .+++||.|+
T Consensus        61 ~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--------~~~~fD~i~  131 (291)
T d1kpia_          61 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--------FDEPVDRIV  131 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--------CCCCCSEEE
T ss_pred             CCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc--------cccccceEe
Confidence            589999999999999999999985 699999999999999999999999875 8888888643        378899997


Q ss_pred             Ee-----CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQ-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~-----fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ..     ++++-... +.+   -.+.+++.+.++|||||++++.+
T Consensus       132 sie~~eH~~~~~~~~-~~~---~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         132 SLGAFEHFADGAGDA-GFE---RYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EESCGGGTTCCSSCC-STT---HHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             echhHHhcchhhhhh-HHH---HHHHHHHHHHHhCCCCCceEEEE
Confidence            65     23321101 111   12589999999999999999875

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=1.6e-12  Score=125.19  Aligned_cols=135  Identities=15%  Similarity=0.101  Sum_probs=102.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||++||+|.+++++|+.  ..+|+++|+|+.+++.|++|+..+|++|++++++|+.+++..+ ......||.|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~-~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRL-EKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHH-HHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhh-HhhhcCCCEEEE
Confidence            4689999999999999999875  5689999999999999999999999999999999999875433 224678999998


Q ss_pred             eCCCCCCCCcchhhhh--hHHHHHHHHHhhccCCeEEEEEeCc-----HHHHHHHHHHHHHcCCce
Q 014711          310 QCPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl--~~~~~l~~i~~~LkpgG~l~~~td~-----~~~~~~~~~~l~~~g~~~  368 (420)
                      .-| .+.+.+....+.  .+.+++..+.++|+|||.|++.|..     ..+.+.+.+.+...+...
T Consensus       222 DpP-~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~  286 (318)
T d1wxxa2         222 DPP-AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL  286 (318)
T ss_dssp             CCC-CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             cCC-ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCE
Confidence            622 222222111111  2368899999999999999998743     344444555666666544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.40  E-value=4.6e-13  Score=124.75  Aligned_cols=104  Identities=19%  Similarity=0.310  Sum_probs=83.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ...+|||||||+|.++..+++++|+..++++|+ +++++.+++++...++. +++++.+|+.+.       .+.++|.|+
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-------~~~~~D~v~  151 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-------LPRKADAII  151 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-------CSSCEEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-------cccchhhee
Confidence            457899999999999999999999999999998 67999999999888874 799999998653       245799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +.+.-..  -...    -...+|++++++|||||+|++.
T Consensus       152 ~~~vlh~--~~d~----~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         152 LSFVLLN--WPDH----DAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             EESCGGG--SCHH----HHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ecccccc--CCch----hhHHHHHHHHHhcCCCcEEEEE
Confidence            7632111  0001    1137899999999999999874

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.39  E-value=3.9e-12  Score=116.68  Aligned_cols=126  Identities=14%  Similarity=0.103  Sum_probs=94.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.++.+||+.. |+..|+|+|+|+.+++.+++++++  ..|+..++.|+.... .+ +.....+|.|+
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~--~~~~~~i~~d~~~~~-~~-~~~~~~vD~i~  148 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPE-EY-RALVPKVDVIF  148 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGG-GG-TTTCCCEEEEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh--cCCceEEEEECCCcc-cc-cccccceEEEE
Confidence            58899999999999999999984 889999999999999999998754  457888999987652 22 22356799998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-----C----cHHHHHHHHHHHHHcCCceeE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----D----IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-----d----~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      ..++.|.          ....+++.+.+.|||||.+++.+     |    .+..+.++ +.+.+.+|...+
T Consensus       149 ~d~~~~~----------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v-~~l~~~gf~iie  208 (227)
T d1g8aa_         149 EDVAQPT----------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREV-ERELSEYFEVIE  208 (227)
T ss_dssp             ECCCSTT----------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHH-HHHHHTTSEEEE
T ss_pred             EEccccc----------hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHH-HHHHHcCCEEEE
Confidence            8765553          12368999999999999998863     2    13333433 334456777654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.2e-12  Score=120.06  Aligned_cols=142  Identities=11%  Similarity=0.084  Sum_probs=104.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhh-hhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFR-SIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~-~~~~~~~~~~d~i  307 (420)
                      +..++||||||+|++.+.||+++|+++++|+|+|+++++.|++|++.+++++ +.+++.+....+. ......++.||.|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3568999999999999999999999999999999999999999999999875 8888877654321 1222235679999


Q ss_pred             EEeCCCCCCCCcc-------hhhh--------------h--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHH
Q 014711          308 SIQCPNPDFNRPE-------HRWR--------------M--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK  358 (420)
Q Consensus       308 ~~~fpdp~~k~~~-------~k~R--------------l--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~  358 (420)
                      ++|  .|++....       .+.+              +        +..+++++..+.++..|.+.+.....+..+.+.
T Consensus       141 vsN--PPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~  218 (250)
T d2h00a1         141 MCN--PPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLK  218 (250)
T ss_dssp             EEC--CCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHH
T ss_pred             Eec--CcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHH
Confidence            998  66653211       0000              0        224567777888999999876665555567788


Q ss_pred             HHHHHcCCceeEeec
Q 014711          359 QQFLEYGKGKLVLVQ  373 (420)
Q Consensus       359 ~~l~~~g~~~~~~~~  373 (420)
                      +.+++.|+..+.+.+
T Consensus       219 ~~L~~~g~~~i~~ie  233 (250)
T d2h00a1         219 EELRIQGVPKVTYTE  233 (250)
T ss_dssp             HHHHHTTCSEEEEEE
T ss_pred             HHHHHcCCCeEEEEE
Confidence            999999987655443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.9e-13  Score=121.56  Aligned_cols=107  Identities=13%  Similarity=0.040  Sum_probs=82.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-----------------CCCcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----------------GITNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-----------------~l~nv~~~~~Da~~~  292 (420)
                      .+.+|||+|||+|..+..||++  +.+|+|||+|+.+|+.|+++....                 .-.++.++++|+.++
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            5689999999999999999997  789999999999999999876432                 124799999999887


Q ss_pred             hhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          293 FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       293 ~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ..    ...+.+|.|+....-.+.   ++.   ..+.+++.+.++|||||++++.+
T Consensus       123 ~~----~~~~~fd~i~~~~~l~~~---~~~---~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         123 PR----TNIGKFDMIWDRGALVAI---NPG---DRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             GG----SCCCCEEEEEESSSTTTS---CGG---GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cc----cccCceeEEEEEEEEEec---cch---hhHHHHHHHHhhcCCcceEEEEE
Confidence            32    246789999865322211   111   22479999999999999988765

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1.6e-12  Score=123.28  Aligned_cols=112  Identities=10%  Similarity=0.092  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC----cEEEEEcChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT----NGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~----nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      +..+|||+|||+|.++..||++  +.+|+|+|+|+.||+.|++++...+..    +..+...|...+... ++ ...+||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD-VP-AGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH-SC-CTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc-cC-CCCCce
Confidence            4578999999999999999987  679999999999999999998776643    345666676655222 22 357899


Q ss_pred             EEEEeC------CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014711          306 LVSIQC------PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  351 (420)
Q Consensus       306 ~i~~~f------pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~  351 (420)
                      .|++.+      |++....  .    -...+|++++++|||||+|++.+-+.
T Consensus       132 ~v~~~~~~~~~~~~~~~~~--~----~~~~~l~~~~~~LkpgG~li~~~~~~  177 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQ--S----EHRLALKNIASMVRPGGLLVIDHRNY  177 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSS--H----HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEEEecCchhhcCCcccCh--H----HHHHHHHHHHHHcCcCcEEEEeecCH
Confidence            998643      2321000  0    11379999999999999999976443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.35  E-value=1.3e-12  Score=119.34  Aligned_cols=100  Identities=15%  Similarity=0.246  Sum_probs=79.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +.+|||||||+|.++..++++.  .+|+|+|+|+++++.|+++..    .|+.++++|+.++.      .+++||.|++.
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~------~~~~fD~I~~~   88 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQ------LPRRYDNIVLT   88 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCC------CSSCEEEEEEE
T ss_pred             CCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc----cccccccccccccc------ccccccccccc
Confidence            5679999999999999999874  579999999999999987643    47999999997752      36789999886


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHH-hhccCCeEEEEEeCc
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVS-DLLVHDGKVFLQSDI  350 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~-~~LkpgG~l~~~td~  350 (420)
                      ..-.|..+  +      ..++.++. ++|||||.+++.+.+
T Consensus        89 ~vleh~~d--~------~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          89 HVLEHIDD--P------VALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             SCGGGCSS--H------HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ceeEecCC--H------HHHHHHHHHHhcCCCceEEEEeCC
Confidence            32222111  1      37888887 789999999998643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=9e-12  Score=120.20  Aligned_cols=135  Identities=14%  Similarity=0.079  Sum_probs=100.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.+++.+|+.. ..+|+++|+|+.+++.|++|+..+|+. +++|+++|+.+.+... ......||.|+
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~-~~~~~~fD~Vi  222 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKL-QKKGEKFDIVV  222 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH-HHTTCCEEEEE
T ss_pred             CCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHH-HhccCCCCchh
Confidence            47899999999999999999874 358999999999999999999999985 7999999999875433 22467899999


Q ss_pred             EeCCCCCCCCcchhhhh--hHHHHHHHHHhhccCCeEEEEEeCc-----HHHHHHHHHHHHHcCCc
Q 014711          309 IQCPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl--~~~~~l~~i~~~LkpgG~l~~~td~-----~~~~~~~~~~l~~~g~~  367 (420)
                      +.- ..+.+.+......  .+.+++..+.++|+|||.|++.|..     +.+.+.+.+...+.+-.
T Consensus       223 ~Dp-P~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~  287 (324)
T d2as0a2         223 LDP-PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKF  287 (324)
T ss_dssp             ECC-CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEE
T ss_pred             cCC-ccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCe
Confidence            862 2222221111111  2367899999999999999997643     44455556666666533

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=1.3e-12  Score=117.41  Aligned_cols=92  Identities=13%  Similarity=0.176  Sum_probs=73.8

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ...|||||||+|.++..++      .++|+|+|+.+++.|+++       |+.++++|+.++     +.++++||.|++.
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l-----~~~~~~fD~I~~~   98 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENL-----PLKDESFDFALMV   98 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBC-----CSCTTCEEEEEEE
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------cccccccccccc-----ccccccccccccc
Confidence            4579999999999988774      358999999999998763       689999999876     2357899999887


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +.-.+..+  +      ..+++++.++|+|||.+++.+
T Consensus        99 ~~l~h~~d--~------~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          99 TTICFVDD--P------ERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             SCGGGSSC--H------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccc--c------ccchhhhhhcCCCCceEEEEe
Confidence            54333211  1      379999999999999999875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.30  E-value=5.8e-12  Score=117.51  Aligned_cols=104  Identities=17%  Similarity=0.195  Sum_probs=82.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ...+|||||||+|.++..+++++|+.+++++|+ +++++.|++++...++. ++.++.+|..+.       .+..+|.++
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-------~p~~~D~v~  152 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-------LPVTADVVL  152 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-------CSCCEEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-------ccccchhhh
Confidence            357899999999999999999999999999997 78999999999888875 599999988653       244689998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +.+.-.  ...+.    -...+|++++++|||||+|++.
T Consensus       153 ~~~vLh--~~~d~----~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         153 LSFVLL--NWSDE----DALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             EESCGG--GSCHH----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccc--ccCcH----HHHHHHHHHHhhcCCcceeEEE
Confidence            763211  00101    1137899999999999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.2e-12  Score=117.09  Aligned_cols=101  Identities=16%  Similarity=0.255  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCC-----CcEEEEEcChhhhhhhhhccCCCe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-----TNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l-----~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      ++.+|||||||+|..+..||+. .|...|+|+|+++++++.|++++.+.++     .|+.+.++|+.....     .+.+
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~-----~~~~  150 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-----EEAP  150 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-----GGCC
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc-----hhhh
Confidence            4789999999999999999987 6788999999999999999999987654     579999999987532     3678


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ||.|++....++              +...+.+.|||||++++-..
T Consensus       151 fD~I~~~~~~~~--------------ip~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         151 YDAIHVGAAAPV--------------VPQALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             EEEEEECSBBSS--------------CCHHHHHTEEEEEEEEEEES
T ss_pred             hhhhhhhcchhh--------------cCHHHHhhcCCCcEEEEEEc
Confidence            999998754332              22346789999999998543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.26  E-value=1.1e-11  Score=106.42  Aligned_cols=106  Identities=19%  Similarity=0.222  Sum_probs=83.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.++++.+.+.. .+++++|+++++++.++++++..++.| ++++++|+..++..    ...+||.|+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~----~~~~fDiIf   88 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC----LTGRFDLVF   88 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH----BCSCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc----cccccceeE
Confidence            478999999999999999888754 499999999999999999999998865 99999999887532    367899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHH--hhccCCeEEEEEeC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~--~~LkpgG~l~~~td  349 (420)
                      +.  .|+.+.       .....+..+.  ++|+|+|.+++++.
T Consensus        89 ~D--PPy~~~-------~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          89 LD--PPYAKE-------TIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             EC--CSSHHH-------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ec--hhhccc-------hHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            74  343111       1124555553  57999999999763

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=1.6e-11  Score=114.69  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=94.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||+|||+|.+++.+|++ +..+|+++|+++.+++.+++|+..++++| +.++++|+.++.      ....+|.|+
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~------~~~~~D~Ii  179 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------GENIADRIL  179 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------CCSCEEEEE
T ss_pred             CccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc------cCCCCCEEE
Confidence            4789999999999999999987 45799999999999999999999999976 999999998762      367899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC--c----HHHHHHHHHHHHHcCCce
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--I----EEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td--~----~~~~~~~~~~l~~~g~~~  368 (420)
                      ++.  |.  .        ...++..+.+.|++||.+++..-  .    ....+.+.+.....++..
T Consensus       180 ~~~--p~--~--------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v  233 (260)
T d2frna1         180 MGY--VV--R--------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  233 (260)
T ss_dssp             ECC--CS--S--------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ECC--CC--c--------hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence            863  22  1        12688889999999999976421  1    122344556666777654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=2e-11  Score=114.59  Aligned_cols=129  Identities=15%  Similarity=0.169  Sum_probs=95.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      +..+++|+|||+|..++.+++ +|+.+|+++|+|+.+++.|++|+.++++.| +.+.++|..+.+..    ..+.||.|+
T Consensus       110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~----~~~~fDlIV  184 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE----KFASIEMIL  184 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG----GTTTCCEEE
T ss_pred             cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc----ccCcccEEE
Confidence            357899999999999999885 799999999999999999999999999875 78888988775322    246899999


Q ss_pred             EeCCCCCCCCc---------chhhhhhH----HHHH-HHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCC
Q 014711          309 IQCPNPDFNRP---------EHRWRMVQ----RSLV-EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  366 (420)
Q Consensus       309 ~~fpdp~~k~~---------~~k~Rl~~----~~~l-~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~  366 (420)
                      .|  .|+....         +++..|..    -.++ +.+.+.|+|||.++|+++. .+.+.+.+.+.+.+|
T Consensus       185 sN--PPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~-~Q~~~v~~l~~~~g~  253 (271)
T d1nv8a_         185 SN--PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE-DQVEELKKIVSDTVF  253 (271)
T ss_dssp             EC--CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT-TCHHHHTTTSTTCEE
T ss_pred             Ec--ccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH-HHHHHHHHHHHhCCE
Confidence            98  4432211         12222221    0122 2356789999999999964 556677777776654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.20  E-value=1.1e-10  Score=112.01  Aligned_cols=135  Identities=10%  Similarity=0.118  Sum_probs=96.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC--CcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l--~nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||++||+|.+++.+|.. ....|+++|+|+.+++.|++|++.+++  .|++|+++|+.+.+..... ....||.|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~-~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-HHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-TTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHh-hcCCCCEE
Confidence            4789999999999999988765 345799999999999999999999987  4799999999988654432 35689999


Q ss_pred             EEeCCCCCCCCcchhhhh--hHHHHHHHHHhhccCCeEEEEEeCc-----HHHHHHHHHHHHHcCCc
Q 014711          308 SIQCPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl--~~~~~l~~i~~~LkpgG~l~~~td~-----~~~~~~~~~~l~~~g~~  367 (420)
                      ++. |+.+-+.+....+.  .+.++++.+.++|+|||.|++.|..     +.+...+.+.+...+..
T Consensus       222 i~D-PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~  287 (317)
T d2b78a2         222 IID-PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  287 (317)
T ss_dssp             EEC-CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             EEc-ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCe
Confidence            885 33332211111111  1357899999999999999998753     23333334444444443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=2e-10  Score=104.09  Aligned_cols=108  Identities=17%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhc-cCCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVA-SYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~-~~~~~~d~  306 (420)
                      ++.+|||||||+|..++.||+..+ +.+++++|+++++++.|++++++.|+. +++++.+|+.+.++.... .....||.
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~  135 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  135 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence            357899999999999999999864 689999999999999999999999986 499999999988655431 13467999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      |++   |.++      ........+.+..+.|+|||.+++
T Consensus       136 ifi---D~~~------~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         136 VFL---DHWK------DRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEE---CSCG------GGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eee---cccc------cccccHHHHHHHhCccCCCcEEEE
Confidence            977   4331      111112346667789999998765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.7e-11  Score=110.59  Aligned_cols=109  Identities=12%  Similarity=0.088  Sum_probs=79.3

Q ss_pred             CEEEEEcCCccHHHHHHHHh----CCC--CeEEEEeCChHHHHHHHHHhHHh-CCCcE--EEEEcChhhhhhhh-hccCC
Q 014711          232 PLVVDIGSGNGLFLLGMARK----RKD--LNFLGLEVNGKLVTHCRDSLQLS-GITNG--YFIATNATSTFRSI-VASYP  301 (420)
Q Consensus       232 ~~vLDIGcG~G~~~~~lA~~----~P~--~~viGiDis~~~i~~A~~~~~~~-~l~nv--~~~~~Da~~~~~~~-~~~~~  301 (420)
                      .+|||||||+|.++..+++.    +|.  ..++|+|+|+.|++.|++++.+. .+.++  .+.+.++..+.... .+..+
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            47999999999998877654    454  36899999999999999987653 34554  45666665543221 12257


Q ss_pred             CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++||.|++.+.-.|..+.        ..+|+.+.++|+|||.+++.+
T Consensus       122 ~~fD~I~~~~~l~~~~d~--------~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceeEEEEccceecCCCH--------HHHHHHHHhhCCCCCEEEEEE
Confidence            899999987544443221        379999999999999998865

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-10  Score=112.44  Aligned_cols=104  Identities=15%  Similarity=0.128  Sum_probs=78.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-------C--CCcEEEEEcChhhhhhhhhccC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-------G--ITNGYFIATNATSTFRSIVASY  300 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-------~--l~nv~~~~~Da~~~~~~~~~~~  300 (420)
                      ++.+|||||||+|.++..+|+.+|..+++|||+|+.+++.|+++..+.       |  ..|+.|+++|+.+..   +  .
T Consensus       151 ~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~---~--~  225 (328)
T d1nw3a_         151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE---W--R  225 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH---H--H
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc---c--c
Confidence            578999999999999999999999889999999999999998876542       2  357999999998752   1  1


Q ss_pred             CC--eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          301 PG--KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       301 ~~--~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +.  ..|.|+++.  -.+ ..    .+  ...|.++.+.|||||+++..
T Consensus       226 ~~~~~advi~~~~--~~f-~~----~~--~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         226 ERIANTSVIFVNN--FAF-GP----EV--DHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHCSEEEECC--TTT-CH----HH--HHHHHHHHTTCCTTCEEEES
T ss_pred             cccCcceEEEEcc--eec-ch----HH--HHHHHHHHHhCCCCcEEEEe
Confidence            21  246777651  111 00    01  26788999999999999763

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.14  E-value=1.9e-10  Score=109.44  Aligned_cols=115  Identities=10%  Similarity=0.050  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+.+|||++||+|.+++.+|+.  ...|+++|.|+.+++.|++|+..+++.  +++|+++|+.+++..... ....||.|
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~-~~~~fD~I  208 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER-RGSTYDII  208 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH-HTCCBSEE
T ss_pred             CCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhh-cCCCCCEE
Confidence            4679999999999999999876  568999999999999999999999875  599999999998754321 35689999


Q ss_pred             EEeCCCCCC---CCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          308 SIQCPNPDF---NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       308 ~~~fpdp~~---k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ++. |..+-   +.....-+-....++..+.++|+|||.+++.|
T Consensus       209 ilD-PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         209 LTD-PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             EEC-CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EEC-CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            885 22121   11111112223567788999999999766654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.6e-11  Score=113.28  Aligned_cols=136  Identities=12%  Similarity=0.010  Sum_probs=87.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE---------------------------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG---------------------------  282 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv---------------------------  282 (420)
                      .+.+|||||||+|.++..++... ..+|+|+|+|+.+++.|++++.+.+....                           
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            35789999999999988777663 34799999999999999999875543210                           


Q ss_pred             ---EEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH--------
Q 014711          283 ---YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------  351 (420)
Q Consensus       283 ---~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~--------  351 (420)
                         .....+.... ....+..+++||.|+..+.-.+....    +.....+++.+.++|||||+|++.+-..        
T Consensus       130 ~~~~~~~~~~~~~-~~~~~~~~~~fD~i~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~  204 (257)
T d2a14a1         130 AVKRVLKCDVHLG-NPLAPAVLPLADCVLTLLAMECACCS----LDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK  204 (257)
T ss_dssp             HEEEEEECCTTSS-STTTTCCCCCEEEEEEESCHHHHCSS----HHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             hhhcccccccccc-cccccccCCcccEEeehhhHHHhccc----HHHHHHHHHHHHhccCCCcEEEEEEecccccceecc
Confidence               0111111100 00012246789999887532111000    0112478999999999999999864110        


Q ss_pred             -------HHHHHHHHHHHHcCCceeEe
Q 014711          352 -------EVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       352 -------~~~~~~~~~l~~~g~~~~~~  371 (420)
                             --.+++.+.+++.||....+
T Consensus       205 ~~~~~~~~~~~~~~~~l~~aGf~v~~~  231 (257)
T d2a14a1         205 REFSCVALEKGEVEQAVLDAGFDIEQL  231 (257)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             ccccccCCCHHHHHHHHHHCCCEEEEE
Confidence                   11467888999999876554

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.9e-10  Score=101.76  Aligned_cols=106  Identities=14%  Similarity=0.147  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.++||++||+|.++++.+.+.. ..++.+|.++.+++.+++|+...+..|+.++++|+..++..    ....||.|++
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~----~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ----KGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS----CCCCEEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccc----cccccCEEEE
Confidence            467899999999999999888753 48999999999999999999998899999999999887532    4678999988


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHh--hccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~--~LkpgG~l~~~td  349 (420)
                      .  .|+....       ....+..+.+  +|+++|.++++++
T Consensus       118 D--PPY~~~~-------~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         118 D--PPFRRGL-------LEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             C--CSSSTTT-------HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             c--Cccccch-------HHHHHHHHHHCCCCCCCeEEEEEec
Confidence            5  4442221       2355666654  6999999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.12  E-value=6.8e-11  Score=107.94  Aligned_cols=96  Identities=20%  Similarity=0.202  Sum_probs=76.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|.++..||+.  ..+|+++|+++.+++.|+++..  ...|+.++++|+...++     ..++||.|++
T Consensus        70 ~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~g~~-----~~~pfD~Iiv  140 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTLGYE-----EEKPYDRVVV  140 (224)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred             ccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHh--cccccccccCchhhcch-----hhhhHHHHHh
Confidence            4789999999999999999988  4689999999999999998865  35799999999976532     2567999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-+.              +...+.+.|||||++++-.
T Consensus       141 ~~a~~~--------------ip~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         141 WATAPT--------------LLCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             SSBBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred             hcchhh--------------hhHHHHHhcCCCCEEEEEE
Confidence            753332              2233457899999998854

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=8.3e-10  Score=98.24  Aligned_cols=132  Identities=11%  Similarity=0.125  Sum_probs=95.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhh-ccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~-~~~~~~~d~i~  308 (420)
                      ++..+||++||+|.++..+++++|+.+++|+|.++.|++.|++++...+ .++.+++++..++ ...+ ....++||.|.
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~-~~~~~~~~~~~vdgIl  100 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA-DFLLKTLGIEKVDGIL  100 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH-HHHHHHTTCSCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhH-HHHHHHcCCCCcceee
Confidence            4789999999999999999999999999999999999999999987765 5799999998776 2221 11357899998


Q ss_pred             EeCC--CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHc
Q 014711          309 IQCP--NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  364 (420)
Q Consensus       309 ~~fp--dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~  364 (420)
                      +.+.  .+..+...+.- -...+.|..+.++|+|||.+.+.+-+..--..+.+.+.+.
T Consensus       101 ~DlGvSs~Qld~~~r~~-~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~  157 (192)
T d1m6ya2         101 MDLGVSTYQLKGENREL-ENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNS  157 (192)
T ss_dssp             EECSCCHHHHHTSHTHH-HHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHHC
T ss_pred             eccchhHhhhhhhhccc-hhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhhc
Confidence            7642  11111111110 1226889999999999999998774422122244455554

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.11  E-value=7.5e-11  Score=106.99  Aligned_cols=99  Identities=16%  Similarity=0.265  Sum_probs=80.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++.+|||||||+|..+..||+.. +.+|+++|+++++++.|++++.+.++.|+.++++|+...++     ..+.||.|++
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~-----~~~pfD~Iiv  151 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-----PKAPYDVIIV  151 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred             ccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc-----ccCcceeEEe
Confidence            46889999999999999999875 46799999999999999999999999999999999987532     3678999998


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ...-+.              +-..+.+.|+|||++++-.
T Consensus       152 ~~a~~~--------------ip~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         152 TAGAPK--------------IPEPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             CSBBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred             eccccc--------------CCHHHHHhcCCCCEEEEEE
Confidence            743321              1112356799999998754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=5.1e-10  Score=97.78  Aligned_cols=106  Identities=15%  Similarity=0.141  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+.+|||+|||+|.++++.+.+  ...++++|+++.+++.+++|++..++++ ++...|+..++.... ....+||.|++
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~-~~~~~fD~If~  116 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAK-AQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHH-HTTCCEEEEEE
T ss_pred             CCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhccccccc-ccCCccceeEE
Confidence            4789999999999999998877  5689999999999999999999999865 556666655432211 14578999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHH--HhhccCCeEEEEEeC
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i--~~~LkpgG~l~~~td  349 (420)
                      .  .|+.+. ..       +.+..+  ..+|+|||.++++++
T Consensus       117 D--PPY~~~-~~-------~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         117 A--PPYAMD-LA-------ALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             C--CCTTSC-TT-------HHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             c--cccccC-HH-------HHHHHHHHcCCcCCCeEEEEEec
Confidence            4  344222 11       222222  357999999999764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.8e-11  Score=111.49  Aligned_cols=137  Identities=12%  Similarity=0.009  Sum_probs=88.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC------------------------------
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI------------------------------  279 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l------------------------------  279 (420)
                      .+.++||||||+|.+.+..+.... .+|+|+|+|+.|++.+++++.+...                              
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            467999999999988766565543 3899999999999999987654321                              


Q ss_pred             CcEEEEEcChhhhhh-hhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc--------
Q 014711          280 TNGYFIATNATSTFR-SIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--------  350 (420)
Q Consensus       280 ~nv~~~~~Da~~~~~-~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~--------  350 (420)
                      ........|+..-.. ...+..++++|.|++.|.-.+...    .+--...+++.++++|||||.|++....        
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~----~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~  208 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP----DLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG  208 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS----SHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHcc----CHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence            012334455543210 001113568999988764332110    0111247899999999999999885310        


Q ss_pred             -------HHHHHHHHHHHHHcCCceeEe
Q 014711          351 -------EEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       351 -------~~~~~~~~~~l~~~g~~~~~~  371 (420)
                             .--.+++.+.+.+.|+..+..
T Consensus       209 ~~~~~~~~~t~e~v~~~l~~aGf~v~~~  236 (263)
T d2g72a1         209 EARLTVVPVSEEEVREALVRSGYKVRDL  236 (263)
T ss_dssp             TEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             CcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence                   012467888899999876543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=1e-10  Score=106.66  Aligned_cols=100  Identities=16%  Similarity=0.311  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh------CCCCeEEEEeCChHHHHHHHHHhHHh-----CCCcEEEEEcChhhhhhhhhc
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK------RKDLNFLGLEVNGKLVTHCRDSLQLS-----GITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~------~P~~~viGiDis~~~i~~A~~~~~~~-----~l~nv~~~~~Da~~~~~~~~~  298 (420)
                      ++.+|||||||+|.++..||+.      ++..+|+++|+++++++.|++++...     +..|+.++++|+.+..+    
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~----  155 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP----  155 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG----
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc----
Confidence            4789999999999999998876      34568999999999999999987543     46799999999987632    


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                       ..++||.|++...-+.              +-..+.+.|||||++++-.
T Consensus       156 -~~~~fD~Iiv~~a~~~--------------~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         156 -PNAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             -GGCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred             -cccceeeEEEEeechh--------------chHHHHHhcCCCcEEEEEE
Confidence             3568999999754331              1134567999999998754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.9e-10  Score=106.91  Aligned_cols=105  Identities=17%  Similarity=0.207  Sum_probs=77.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.+++.+|+..+ .+|+|+|.|+.+.. +++++.+++. .++.++++|+.++.     .++.++|.|+
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~-----~~~~~~D~Iv  107 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVH-----LPVEKVDVII  107 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSC-----CSCSCEEEEE
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhc-----CccccceEEE
Confidence            368899999999999999998754 58999999998865 5555555554 57999999998862     2467999998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      ...........     ..-+.++....+.|||||+++-
T Consensus       108 se~~~~~~~~e-----~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         108 SEWMGYFLLFE-----SMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             ECCCBTTBTTT-----CHHHHHHHHHHHHEEEEEEEES
T ss_pred             Eeeeeeecccc-----cccHHHHHHHHhcCCCCcEEec
Confidence            75433321111     1224777888899999999863

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=4e-10  Score=107.93  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +.+|||||||+|.+++.+|+.. ..+|+|+|.|+. ...+++++..+++. ++.++++|+.++     +.+.+++|.|+.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~-----~~~~~~~D~ivs  106 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEV-----ELPVEKVDIIIS  106 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTC-----CCSSSCEEEEEE
T ss_pred             cCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHc-----ccccceeEEEee
Confidence            6889999999999999888864 358999999975 46777888788875 599999999886     224678999976


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      .........     .-.-+.++..+.++|||||.++
T Consensus       107 ~~~~~~l~~-----e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         107 EWMGYCLFY-----ESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCCBBTBTB-----TCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeecc-----HHHHHHHHHHHHhcCCCCeEEE
Confidence            533221100     0112478999999999999986

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=2e-09  Score=96.36  Aligned_cols=124  Identities=16%  Similarity=0.131  Sum_probs=84.1

Q ss_pred             cCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014711          226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       226 f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d  305 (420)
                      .++-++..|||+|||+|.+++.++... ...|+|+|+++.+++.|++|+...+. +..++++|+..+        +..||
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~--------~~~fD  111 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF--------NSRVD  111 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC--------CCCCS
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh--------CCcCc
Confidence            333357899999999999999887663 46899999999999999999988776 578999998764        56799


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHHHHcCCce
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l~~~g~~~  368 (420)
                      .|+++  .|+.....+    ....++.....   +++.++..+ ........+.....++++..
T Consensus       112 ~Vi~n--PP~~~~~~~----~d~~~l~~~~~---~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i  166 (201)
T d1wy7a1         112 IVIMN--PPFGSQRKH----ADRPFLLKAFE---ISDVVYSIHLAKPEVRRFIEKFSWEHGFVV  166 (201)
T ss_dssp             EEEEC--CCCSSSSTT----TTHHHHHHHHH---HCSEEEEEEECCHHHHHHHHHHHHHTTEEE
T ss_pred             EEEEc--Ccccccccc----ccHHHHHHHHh---hcccchhcccchHHHHHHHHHHHhhcCceE
Confidence            99887  455322221    22345544433   344444332 23333344555566777654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=5.7e-10  Score=107.33  Aligned_cols=104  Identities=14%  Similarity=0.272  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||||||+|.+++.+|++. ..+|+|+|.|+ ++..|++++.+++.. ++.++++|+.++     +.++.++|.|+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l-----~~~~~~~D~i~  110 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV-----HLPFPKVDIII  110 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSSSCEEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc-----cCcccceeEEE
Confidence            36899999999999998888763 45899999996 678899988888865 699999999876     22478899998


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      ...........     ...+.++....++|||||.++
T Consensus       111 se~~~~~~~~e-----~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         111 SEWMGYFLLYE-----SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ECCCBTTBSTT-----CCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEecceeeccc-----hhHHHHHHHHHhccCCCeEEE
Confidence            75333221110     112468888899999999985

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.04  E-value=6.4e-10  Score=98.15  Aligned_cols=109  Identities=15%  Similarity=0.171  Sum_probs=85.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++.+|||++||+|.++++.+.+. ...++.+|.++.+++.+++|++..+.. |+.++++|+..++..... ....||.|+
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~-~~~~fDlIf  118 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE-EKLQFDLVL  118 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc-cCCCcceEE
Confidence            47899999999999999988874 348999999999999999999988876 799999999988654332 356799997


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHh--hccCCeEEEEEeC
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~--~LkpgG~l~~~td  349 (420)
                      +.  .|+ ....      ....+..+.+  +|+++|.++++++
T Consensus       119 lD--PPY-~~~~------~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         119 LD--PPY-AKQE------IVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             EC--CCG-GGCC------HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ec--hhh-hhhH------HHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            74  343 2111      1356666654  6999999999874

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.1e-09  Score=99.56  Aligned_cols=106  Identities=17%  Similarity=0.152  Sum_probs=88.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhcc-CCCeEeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVAS-YPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~-~~~~~d~  306 (420)
                      +..+|||||||+|..++.+|+..| +.+++.+|+++...+.|+++..+.|+.+ ++++.+|+.+.++..+.. .+++||.
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~  138 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  138 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence            468899999999999999999876 7899999999999999999999999875 999999999887654321 3578999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      |++.   .+  +.      .+...++.+.+.|+|||.+++
T Consensus       139 ifiD---~d--k~------~y~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1         139 AVVD---AD--KE------NCSAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             EEEC---SC--ST------THHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEe---CC--HH------HHHHHHHHHHHHhcCCcEEEE
Confidence            9884   22  11      124788899999999999988

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.04  E-value=1.3e-09  Score=104.10  Aligned_cols=131  Identities=15%  Similarity=0.167  Sum_probs=103.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-----CCCcEEEEEcChhhhhhhhhccCCCe
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----GITNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-----~l~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      ++...||.||.|.|..+..+++..|..+++.+|+++..++.|++.....     .-++++++.+|+..++..    .+..
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~----~~~~  151 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TEER  151 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CCCC
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh----cCCc
Confidence            4578999999999999999998888899999999999999999986432     235799999999998653    4678


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-----HHHHHHHHHHHHHc
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEY  364 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-----~~~~~~~~~~l~~~  364 (420)
                      +|.|++..+||+... ....++.+.+|++.+.+.|+|||.+++.+..     ......+.+.+++.
T Consensus       152 yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~  216 (312)
T d1uira_         152 YDVVIIDLTDPVGED-NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA  216 (312)
T ss_dssp             EEEEEEECCCCBSTT-CGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT
T ss_pred             ccEEEEeCCCccccc-chhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh
Confidence            999999888987432 2345677889999999999999999986522     23334455566654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.98  E-value=2.2e-09  Score=97.96  Aligned_cols=106  Identities=16%  Similarity=0.169  Sum_probs=89.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhcc--CCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVAS--YPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~--~~~~~d  305 (420)
                      +...||||||++|..++.+|+..| +.+++.+|.+++..+.|++++.+.|+.+ ++++.+|+.+.++.....  ..++||
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD  138 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  138 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence            468999999999999999999876 6899999999999999999999999875 999999999987765421  245799


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                      .|++   |.+. .       -+..+++.+.+.|+|||.+++
T Consensus       139 ~iFi---Da~k-~-------~y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1         139 FIFV---DADK-D-------NYLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             EEEE---CSCS-T-------THHHHHHHHHHHBCTTCCEEE
T ss_pred             EEEe---ccch-h-------hhHHHHHHHHhhcCCCcEEEE
Confidence            9988   4441 1       135889999999999999987

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=7.5e-10  Score=109.17  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=73.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC---------CCcEEE-EEcChhhh--hhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---------ITNGYF-IATNATST--FRSIV  297 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~---------l~nv~~-~~~Da~~~--~~~~~  297 (420)
                      ++.++||||||+|..+..+|+.+|..+++|||+|+.+++.|++++.+.+         ..+..+ .+++....  .+..+
T Consensus       216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~  295 (406)
T d1u2za_         216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI  295 (406)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred             CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccccc
Confidence            5789999999999999999999998899999999999999999887532         123333 33444322  11111


Q ss_pred             ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014711          298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  346 (420)
Q Consensus       298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~  346 (420)
                          ...|.|+++.   +....+    +  ...|.++.+.|||||+|+.
T Consensus       296 ----~~adVV~inn---~~f~~~----l--~~~L~ei~r~LKPGGrIVs  331 (406)
T d1u2za_         296 ----PQCDVILVNN---FLFDED----L--NKKVEKILQTAKVGCKIIS  331 (406)
T ss_dssp             ----GGCSEEEECC---TTCCHH----H--HHHHHHHHTTCCTTCEEEE
T ss_pred             ----ccceEEEEec---ccCchH----H--HHHHHHHHHhcCCCcEEEE
Confidence                2467777751   100111    1  3678999999999999875

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.93  E-value=1.7e-09  Score=96.50  Aligned_cols=115  Identities=12%  Similarity=0.195  Sum_probs=75.3

Q ss_pred             CCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeE
Q 014711          227 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       227 ~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~  306 (420)
                      ++-++.+|||+|||+|.+++.++... ..+|+|+|+++.+++.|++|+     .++.|+++|+.++        ++.||.
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l--------~~~fD~  110 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEI--------SGKYDT  110 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGC--------CCCEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHcc-----ccccEEEEehhhc--------CCcceE
Confidence            33457899999999999998877764 358999999999999998875     4789999999764        568999


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcC
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG  365 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g  365 (420)
                      |+.|  .||-...    +.....|++...   .++..++.... ....+.+...+...+
T Consensus       111 Vi~N--PPfg~~~----~~~D~~fl~~a~---~~~~~iy~ih~-~~~~~~i~~~~~~~~  159 (197)
T d1ne2a_         111 WIMN--PPFGSVV----KHSDRAFIDKAF---ETSMWIYSIGN-AKARDFLRREFSARG  159 (197)
T ss_dssp             EEEC--CCC-----------CHHHHHHHH---HHEEEEEEEEE-GGGHHHHHHHHHHHE
T ss_pred             EEeC--cccchhh----hhchHHHHHHHH---hcCCeEEEehh-hhHHHHHHHHhhcCc
Confidence            9887  4542111    112235665443   34555554331 122233444455443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.89  E-value=6.4e-09  Score=97.55  Aligned_cols=126  Identities=11%  Similarity=0.159  Sum_probs=95.8

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh----------CCCcEEEEEcChhhhhhhhhc
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----------GITNGYFIATNATSTFRSIVA  298 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~----------~l~nv~~~~~Da~~~~~~~~~  298 (420)
                      +++..||-||+|.|..+..+.+ +|..+++.+|+++.+++.|++.....          .-++++++.+|+..++..   
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~---  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---  146 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc---
Confidence            4578999999999999988876 56679999999999999998754221          235799999999988642   


Q ss_pred             cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                        ...+|.|++..++|..    ...++.+.+|++.+.+.|+|||.+++.+..    ......+.+.+.+.
T Consensus       147 --~~~yDvIi~D~~~~~~----~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~  210 (276)
T d1mjfa_         147 --NRGFDVIIADSTDPVG----PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV  210 (276)
T ss_dssp             --CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred             --cCCCCEEEEeCCCCCC----CcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh
Confidence              5679999998888752    234577789999999999999999987643    23334455555554

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=6.2e-09  Score=98.35  Aligned_cols=129  Identities=16%  Similarity=0.218  Sum_probs=97.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh----CCCcEEEEEcChhhhhhhhhccCCCeE
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~----~l~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++...||-||.|.|..+..+++..|..+++.+|+++.+++.|++.....    .-++++++.+|+..++..    .+..|
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~~y  163 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----FKNEF  163 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG----CSSCE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc----CCCCC
Confidence            4568999999999999999998877889999999999999999876432    235799999999988643    46789


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH----HHHHHHHHHHHHc
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY  364 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~----~~~~~~~~~l~~~  364 (420)
                      |.|++..+||+..   +..++.+.+|++.+.+.|+|||.+.+.+..+    .....+.+.+.+.
T Consensus       164 DvIi~D~~dp~~~---~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v  224 (295)
T d1inla_         164 DVIIIDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV  224 (295)
T ss_dssp             EEEEEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCcC---chhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh
Confidence            9999998888622   2235777899999999999999999987542    3334455555554

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=3e-08  Score=95.95  Aligned_cols=126  Identities=18%  Similarity=0.211  Sum_probs=95.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..+||+-||+|.+++.||+.  ..+|+|+|+++.+++.|++|+..+++.|+.|+++|+.+.+.... .....+|.|++
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~-~~~~~~d~vil  288 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP-WAKNGFDKVLL  288 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG-GGTTCCSEEEE
T ss_pred             CCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh-hhhccCceEEe
Confidence            3678999999999999999987  46899999999999999999999999999999999987643221 13466898866


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  371 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~  371 (420)
                         ||- ...-       .+.+..+.+ ++|.-.+|+.+|...++..+. .|.+.||....+
T Consensus       289 ---DPP-R~G~-------~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~-~l~~~gy~l~~i  337 (358)
T d1uwva2         289 ---DPA-RAGA-------AGVMQQIIK-LEPIRIVYVSCNPATLARDSE-ALLKAGYTIARL  337 (358)
T ss_dssp             ---CCC-TTCC-------HHHHHHHHH-HCCSEEEEEESCHHHHHHHHH-HHHHTTCEEEEE
T ss_pred             ---CCC-CccH-------HHHHHHHHH-cCCCEEEEEeCCHHHHHHHHH-HHHHCCCeEeEE
Confidence               553 1221       145555555 478888999887666666554 455678876554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.78  E-value=5.6e-08  Score=91.55  Aligned_cols=130  Identities=15%  Similarity=0.158  Sum_probs=104.4

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh----CCCcEEEEEcChhhhhhhhhccCCCeE
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~----~l~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++..+||=||-|.|..+.++.+..|-.+++.+|+++.+++.|++.....    .-++++++.+|+..++...   .++.|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~---~~~~y  155 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA---AEGSY  155 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS---CTTCE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc---cccCc
Confidence            4568999999999999999998777789999999999999999865321    2357999999999886432   35689


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHcC
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYG  365 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~g  365 (420)
                      |.|++..+||..    ...++.+.+|++.+.+.|+|||.+++.+..    ...+..+.+.+.+..
T Consensus       156 DvIi~D~~dp~~----~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF  216 (290)
T d1xj5a_         156 DAVIVDSSDPIG----PAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF  216 (290)
T ss_dssp             EEEEECCCCTTS----GGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred             cEEEEcCCCCCC----cchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence            999998888862    335688899999999999999999998753    445556666666653

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.77  E-value=1.7e-08  Score=95.75  Aligned_cols=128  Identities=13%  Similarity=0.119  Sum_probs=94.5

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh----CCCcEEEEEcChhhhhhhhhccCCCeE
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~----~l~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++..+||-||-|.|..+..+.+..|-.+++.+|+++.+++.|++.....    .-++++++.+|+..++..    .+..|
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~----~~~~y  180 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKNEF  180 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTTCE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh----CCCCC
Confidence            4578899999999999999998777789999999999999999876432    235799999999998643    46789


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      |.|++..+||..    ....+...+|++.+.+.|+|||.++.++..    ......+.+.+++.
T Consensus       181 DvII~D~~dp~~----~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v  240 (312)
T d2b2ca1         181 DVIITDSSDPVG----PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI  240 (312)
T ss_dssp             EEEEECCC-----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCC----cchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc
Confidence            999998888752    234578889999999999999999998754    33445566666553

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.6e-08  Score=93.69  Aligned_cols=129  Identities=13%  Similarity=0.157  Sum_probs=96.1

Q ss_pred             CCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH----hCCCcEEEEEcChhhhhhhhhccCCCe
Q 014711          228 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGK  303 (420)
Q Consensus       228 ~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~----~~l~nv~~~~~Da~~~~~~~~~~~~~~  303 (420)
                      .++...||-||-|.|..+..+.+..|..+++.+|+++.+++.|++....    ..-++++++.+|+..++..    .+..
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~----~~~~  151 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----NQDA  151 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT----CSSC
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc----CCCC
Confidence            3457889999999999999999877788999999999999999987643    2235799999999998643    3678


Q ss_pred             EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      +|.|++..+||..    ....+.+.+|++.+.+.|+|||.+++++..    ......+.+.+++.
T Consensus       152 yDvIi~D~~~p~~----~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~  212 (285)
T d2o07a1         152 FDVIITDSSDPMG----PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL  212 (285)
T ss_dssp             EEEEEEECC---------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCC----cccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc
Confidence            9999998888752    223577789999999999999999998643    33344555566553

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=3.3e-08  Score=92.48  Aligned_cols=128  Identities=13%  Similarity=0.187  Sum_probs=102.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh----CCCcEEEEEcChhhhhhhhhccCCCeE
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~----~l~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++...||-||-|.|..+..+.+..|..+++.+||++..++.|++.....    .-+++.++.+|+..++..    .+..+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~----~~~~y  149 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----SENQY  149 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----CCSCE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh----cCCCC
Confidence            3568999999999999999998877889999999999999999876431    235799999999988643    46789


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  364 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~  364 (420)
                      |.|++..+||+-..    ..|.+.+|++.+.+.|+|||.++..+..    +.....+.+.+++.
T Consensus       150 DvIi~D~~~p~~~~----~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~  209 (274)
T d1iy9a_         150 DVIMVDSTEPVGPA----VNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI  209 (274)
T ss_dssp             EEEEESCSSCCSCC----CCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCCCCCcc----hhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh
Confidence            99999888886322    2367789999999999999999998743    34445566666654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=5.3e-08  Score=87.20  Aligned_cols=101  Identities=17%  Similarity=0.120  Sum_probs=87.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +..++|+|||.|.-++.+|-.+|+.+++.+|.+.+-+...++-+.+.+++|+.+++..++++.      ...+||.|+.-
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~------~~~~fD~V~sR  139 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP------SEPPFDGVISR  139 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC------CCSCEEEEECS
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc------cccccceehhh
Confidence            457999999999999999999999999999999999999999999999999999999998762      35689998764


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      ---|.            +.+++.+...++++|.+++.-.
T Consensus       140 A~~~~------------~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         140 AFASL------------NDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             CSSSH------------HHHHHHHTTSEEEEEEEEEEES
T ss_pred             hhcCH------------HHHHHHHHHhcCCCcEEEEECC
Confidence            22221            4789999999999999998764

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.60  E-value=1.5e-07  Score=82.45  Aligned_cols=108  Identities=12%  Similarity=0.195  Sum_probs=82.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      ++.++||+.||||.++++.+.+. ...++.||.+..+++..++|++..+..  +..+++.|+.+.+....  ....||.|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~--~~~~fDlI  119 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ--NQPHFDVV  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC--SSCCEEEE
T ss_pred             ccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccc--cCCcccEE
Confidence            46789999999999999999885 458999999999999999999988765  48888899877643221  24569999


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHh--hccCCeEEEEEeC
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD  349 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~--~LkpgG~l~~~td  349 (420)
                      ++   ||-....      .....+..+..  +|+++|.+++++.
T Consensus       120 Fl---DPPY~~~------~~~~~l~~l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         120 FL---DPPFHFN------LAEQAISLLCENNWLKPNALIYVETE  154 (183)
T ss_dssp             EE---CCCSSSC------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             Ee---chhHhhh------hHHHHHHHHHHhCCcCCCcEEEEEec
Confidence            77   4432221      12356666644  7999999999874

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.57  E-value=1.1e-07  Score=87.30  Aligned_cols=97  Identities=14%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ...+|||||||+|.+++.+++++|+.+++..|+- ..++.      .....+++++.+|..+-    +   + ..|.+++
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~------~~~~~ri~~~~gd~~~~----~---p-~~D~~~l  145 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIEN------APPLSGIEHVGGDMFAS----V---P-QGDAMIL  145 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTT------CCCCTTEEEEECCTTTC----C---C-CEEEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhhc------cCCCCCeEEecCCcccc----c---c-cceEEEE
Confidence            3578999999999999999999999999999974 33321      12346899999998643    1   2 3488766


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ..  -.+...+.    ....+|+.+++.|+|||++++.
T Consensus       146 ~~--vLh~~~de----~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         146 KA--VCHNWSDE----KCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             ES--SGGGSCHH----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eh--hhhhCCHH----HHHHHHHHHHHHcCCCcEEEEE
Confidence            52  11111111    1237899999999999998885

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.55  E-value=7.9e-07  Score=80.98  Aligned_cols=125  Identities=16%  Similarity=0.099  Sum_probs=98.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ...++|||+|.|.-++.||-.+|+.+++.+|.+.+-+...+.-..+.+++|+.+++..++++-..  .....+||.|+.-
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~--~~~~~~~D~v~sR  148 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR--KDVRESYDIVTAR  148 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--TTTTTCEEEEEEE
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc--ccccccceEEEEh
Confidence            56899999999999999999999999999999999999999999999999999999999876211  0124689999875


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe--CcHHHHHHHHHHHHHcCCcee
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t--d~~~~~~~~~~~l~~~g~~~~  369 (420)
                      ---+.            +.+++.....+++||.+++.-  ++..-.++....+...++...
T Consensus       149 Ava~l------------~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~  197 (239)
T d1xdza_         149 AVARL------------SVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE  197 (239)
T ss_dssp             CCSCH------------HHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred             hhhCH------------HHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEE
Confidence            32232            478999999999999998864  233334445566777666543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.45  E-value=1.4e-06  Score=82.65  Aligned_cols=114  Identities=17%  Similarity=0.173  Sum_probs=88.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||++||.|.=+..++.. ..+..+++.|+++..+...++++.+.+..|+.+.+.|...+ ..    .+..||.|.
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~-~~----~~~~fD~IL  190 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI-GE----LNVEFDKIL  190 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG-GG----GCCCEEEEE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc-cc----ccccccEEE
Confidence            4789999999999999999887 44678999999999999999999999999999999998776 21    367899998


Q ss_pred             EeCC---------CCCCCCcchhh---h--hhHHHHHHHHHhhccCCeEEEEEe
Q 014711          309 IQCP---------NPDFNRPEHRW---R--MVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       309 ~~fp---------dp~~k~~~~k~---R--l~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      +.-|         +|..+......   +  -+|.++|....+.|||||+++-.|
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence            7632         12111111111   1  245889999999999999998887

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=1.5e-06  Score=81.23  Aligned_cols=114  Identities=11%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      .+..|||+++|.|.=+..||....+..++++|+++..+...++++.+.|++|+.....|.... . ..  .+..||.|.+
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~-~-~~--~~~~fd~IL~  177 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS-Q-WC--GEQQFDRILL  177 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH-H-HH--TTCCEEEEEE
T ss_pred             ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccc-h-hc--ccccccEEEE
Confidence            478999999999999999999888889999999999999999999999999988777766543 1 11  3578999988


Q ss_pred             eCCCCCC------CCcchhh--------h--hhHHHHHHHHHhhccCCeEEEEEeC
Q 014711          310 QCPNPDF------NRPEHRW--------R--MVQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       310 ~fpdp~~------k~~~~k~--------R--l~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      .-  |+.      +....+.        +  -+|.++|+.+.+.|||||+++-.|-
T Consensus       178 Da--PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         178 DA--PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             EC--CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             ec--cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            63  221      1111111        1  1458899999999999999998873

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.44  E-value=3.5e-07  Score=87.16  Aligned_cols=127  Identities=12%  Similarity=0.134  Sum_probs=88.9

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-----CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-----RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-----~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~  304 (420)
                      ++..|||.|||+|.+++.+.++     .++.+++|+|+++.++..|+.++...+.. ..+.+.|.....      ....|
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~------~~~~f  189 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-MTLLHQDGLANL------LVDPV  189 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCTTSCC------CCCCE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-hhhhcccccccc------ccccc
Confidence            4578999999999999998654     35568999999999999999998877754 466677765431      35789


Q ss_pred             eEEEEeCCCCCCCCcch------------hhhhhHHHHHHHHHhhccCCeEEEEEeCcH----HHHHHHHHHHHHcC
Q 014711          305 ILVSIQCPNPDFNRPEH------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYG  365 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~------------k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~----~~~~~~~~~l~~~g  365 (420)
                      |.|..+  .|+......            .+....-.|+..+.+.|+|||++.+.+...    ...+.+++.+.++.
T Consensus       190 D~vi~N--PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~  264 (328)
T d2f8la1         190 DVVISD--LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG  264 (328)
T ss_dssp             EEEEEE--CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred             cccccC--CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCC
Confidence            999998  444211100            011123468999999999999987765321    22455677666553

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.37  E-value=1.8e-06  Score=83.80  Aligned_cols=107  Identities=9%  Similarity=0.028  Sum_probs=87.7

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC---------------cEEEEEcChhhhhhh
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT---------------NGYFIATNATSTFRS  295 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~---------------nv~~~~~Da~~~~~~  295 (420)
                      +.+|||..||+|..++.+|+..+...|+..|+|+.+++.+++|++.++..               ++.+.+.|+..++..
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            57899999999999999999888789999999999999999999888654               377888999877532


Q ss_pred             hhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHHH
Q 014711          296 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV  353 (420)
Q Consensus       296 ~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~~  353 (420)
                          ....||.|.+   ||+= .  +      ..||+.+.+.++.||.+.+. ||...+
T Consensus       126 ----~~~~fDvIDi---DPfG-s--~------~pfldsAi~a~~~~Gll~vTaTD~a~L  168 (375)
T d2dula1         126 ----RHRYFHFIDL---DPFG-S--P------MEFLDTALRSAKRRGILGVTATDGAPL  168 (375)
T ss_dssp             ----STTCEEEEEE---CCSS-C--C------HHHHHHHHHHEEEEEEEEEEECCHHHH
T ss_pred             ----hcCcCCcccC---CCCC-C--c------HHHHHHHHHHhccCCEEEEEecCchhh
Confidence                3567999977   5641 1  1      27999999999999999986 665444

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.35  E-value=6.9e-07  Score=81.84  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ...|||||||+|.++..+++++|+.+++..|.. ..++.+      ....+++++.+|..+-        ....|.+++.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~------~~~~rv~~~~gD~f~~--------~p~aD~~~l~  145 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL------SGSNNLTYVGGDMFTS--------IPNADAVLLK  145 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC------CCBTTEEEEECCTTTC--------CCCCSEEEEE
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC------cccCceEEEecCcccC--------CCCCcEEEEE
Confidence            578999999999999999999999999999984 444322      2235799999998652        1245877665


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCC---eEEEEE
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFLQ  347 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg---G~l~~~  347 (420)
                      ..  .+.....    ...++|+.+++.|+||   |++++.
T Consensus       146 ~v--LHdw~d~----~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         146 YI--LHNWTDK----DCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             SC--GGGSCHH----HHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             ee--cccCChH----HHHHHHHHHHHHcCcccCCcEEEEE
Confidence            21  1111111    1237999999999998   666653

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.33  E-value=9.2e-07  Score=78.67  Aligned_cols=119  Identities=15%  Similarity=0.070  Sum_probs=81.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+.+|||.|||+|.++..+.++++. .+++|+|+++.++..+         .+..++++|.....      ....+|.+.
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~------~~~~fd~ii   83 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE------PGEAFDLIL   83 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC------CSSCEEEEE
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccc------cccccceec
Confidence            4679999999999999999877655 5799999998765322         34677888876541      356899998


Q ss_pred             EeCCCCCCCCcch-----------------------hhhhhHHHHHHHHHhhccCCeEEEEEeCcH----HHHHHHHHHH
Q 014711          309 IQCPNPDFNRPEH-----------------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQF  361 (420)
Q Consensus       309 ~~fpdp~~k~~~~-----------------------k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~----~~~~~~~~~l  361 (420)
                      .+.|  +....+.                       .+.-++..|+....+.|+|||++.+.+...    .+.+.+++.+
T Consensus        84 ~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l  161 (223)
T d2ih2a1          84 GNPP--YGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFL  161 (223)
T ss_dssp             ECCC--CCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHH
T ss_pred             ccCc--cccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHH
Confidence            8733  3111000                       001123578899999999999998876321    1245566666


Q ss_pred             HHcC
Q 014711          362 LEYG  365 (420)
Q Consensus       362 ~~~g  365 (420)
                      .++.
T Consensus       162 ~~~~  165 (223)
T d2ih2a1         162 AREG  165 (223)
T ss_dssp             HHHS
T ss_pred             HhcC
Confidence            6654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.28  E-value=1.2e-06  Score=79.65  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.+|..|++.  ..+++++|+++.+++.++++..  +.+|++++++|+.++.   +  +......|+.
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~~---~--~~~~~~~vv~   91 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFK---F--PKNQSYKIFG   91 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCC---C--CSSCCCEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhcc---c--cccccceeee
Confidence            4788999999999999999987  4689999999999999988764  3569999999998862   1  2333345667


Q ss_pred             eC
Q 014711          310 QC  311 (420)
Q Consensus       310 ~f  311 (420)
                      |.
T Consensus        92 NL   93 (235)
T d1qama_          92 NI   93 (235)
T ss_dssp             EC
T ss_pred             ee
Confidence            73

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.1e-06  Score=78.61  Aligned_cols=117  Identities=8%  Similarity=0.026  Sum_probs=84.6

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||++||.|.-+..+|.. .+...++++|+++..++..++++++.|++|+.+...|...+.+. .+ ..+.||.|.
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~-~~-~~~~fD~VL  171 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS-DP-RYHEVHYIL  171 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT-CG-GGTTEEEEE
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccc-cc-ccceeeEEe
Confidence            4788999999999999999876 56789999999999999999999999999999999999876221 10 125699998


Q ss_pred             EeCC---------CCCCCCc---ch--hhhh--hHHHHHHHHHhhccCCeEEEEEeC
Q 014711          309 IQCP---------NPDFNRP---EH--RWRM--VQRSLVEAVSDLLVHDGKVFLQSD  349 (420)
Q Consensus       309 ~~fp---------dp~~k~~---~~--k~Rl--~~~~~l~~i~~~LkpgG~l~~~td  349 (420)
                      +.-|         +|..+..   ..  ..++  .|.+++..+. .|+|||+++-.|-
T Consensus       172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTC  227 (293)
T d2b9ea1         172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTC  227 (293)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEES
T ss_pred             ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeec
Confidence            7633         1211111   10  0122  3456777666 4899999888773

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.27  E-value=6.1e-07  Score=82.08  Aligned_cols=95  Identities=12%  Similarity=0.163  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ..+|||||||+|.+++.+++++|+.++++.|+.+. ++.      .....+++++.+|..+-    +  +..  |.+++.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~------~~~~~r~~~~~~d~~~~----~--P~a--d~~~l~  146 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IED------APSYPGVEHVGGDMFVS----I--PKA--DAVFMK  146 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTT------CCCCTTEEEEECCTTTC----C--CCC--SCEECS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhh------cccCCceEEeccccccc----C--CCc--ceEEEE
Confidence            57899999999999999999999999999998653 221      12235799999998653    2  222  222221


Q ss_pred             -CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          311 -CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       311 -fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                       ...-|   ...    ....+|+++++.|+|||++.+.
T Consensus       147 ~vlh~~---~d~----~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         147 WICHDW---SDE----HCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             SSSTTS---CHH----HHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEeecC---CHH----HHHHHHHHHHHhcCCCceEEEE
Confidence             11112   111    1237999999999999998875

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.23  E-value=6.1e-06  Score=71.93  Aligned_cols=130  Identities=12%  Similarity=0.123  Sum_probs=90.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~i~  308 (420)
                      ++.+++|..||.|.++..+.++  +.+++|+|..+.++..|++.    ..+++.+++.+..++ ...++ .....+|.|.
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~-~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHL-KRHLAALGVERVDGIL   90 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGH-HHHHHHTTCSCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHH-HHHHHHcCCCccCEEE
Confidence            5789999999999999999987  56899999999999888764    346899999998887 33332 1346799998


Q ss_pred             EeCC--CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          309 IQCP--NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       309 ~~fp--dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                      +.+-  ....++....-. .....|......|+|||.+.+.+-+..--..+.+.+++..+.
T Consensus        91 ~DLGvSs~qld~~~re~~-~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k  150 (182)
T d1wg8a2          91 ADLGVSSFHLDDPSDELN-ALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK  150 (182)
T ss_dssp             EECSCCHHHHHCGGTHHH-HHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred             EEccCCHHHhhcchHHHH-HHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence            7641  111111111111 124578999999999999998875433223356666666544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.05  E-value=1.4e-06  Score=76.79  Aligned_cols=107  Identities=15%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCccHHHHHHH----Hh----CCCCeEEEEeCChHHHHHHHHHh--------------HH----hCC-----
Q 014711          231 QPLVVDIGSGNGLFLLGMA----RK----RKDLNFLGLEVNGKLVTHCRDSL--------------QL----SGI-----  279 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA----~~----~P~~~viGiDis~~~i~~A~~~~--------------~~----~~l-----  279 (420)
                      .-+|+++|||+|.-.-.||    +.    ..+..++|.|+|+.+++.|++-.              .+    .+.     
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            4689999999999544443    22    12457999999999999998521              00    000     


Q ss_pred             --------CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          280 --------TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       280 --------~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                              ..+.+.+.+.....    +...+.+|.|++-.---++..      -.+.++++.+++.|+|||+|++-
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~~----~~~~~~fDvI~CRNVLiYf~~------~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEKQ----YNVPGPFDAIFCRNVMIYFDK------TTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCSS----CCCCCCEEEEEECSSGGGSCH------HHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eehHHHHHHHHHHhhhhccccc----cCCCCCccEEEeehhHHhcCH------HHHHHHHHHHHHHhCCCcEEEEe
Confidence                    12334444433220    013467999987532111111      12358999999999999999884

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.93  E-value=5e-07  Score=82.81  Aligned_cols=74  Identities=16%  Similarity=0.179  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ++..|||||||+|.+|..|++.  ..++++||+++.+++.++++..  ..+|++++++|+.++.   +  +....+.|+.
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~---~--~~~~~~~vv~   99 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQ---F--PNKQRYKIVG   99 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTT---C--CCSSEEEEEE
T ss_pred             CCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhh--hccchhhhhhhhhccc---c--ccceeeeEee
Confidence            4678999999999999999998  5689999999999988876543  3469999999998862   2  3455667777


Q ss_pred             eCC
Q 014711          310 QCP  312 (420)
Q Consensus       310 ~fp  312 (420)
                      +.|
T Consensus       100 NLP  102 (245)
T d1yuba_         100 NIP  102 (245)
T ss_dssp             ECC
T ss_pred             eee
Confidence            743

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00014  Score=67.16  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|||||+|.|.+|..|++.  ..+++++|+++.++...+++...... .|+.++++|+....       ......|+
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~-------~~~~~~vV   91 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-------LPFFDTCV   91 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-------CCCCSEEE
T ss_pred             CCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh-------hhhhhhhh
Confidence            4678999999999999999998  45899999999999999988765543 58999999998761       12245677


Q ss_pred             EeCCCCC
Q 014711          309 IQCPNPD  315 (420)
Q Consensus       309 ~~fpdp~  315 (420)
                      .|  -|+
T Consensus        92 ~N--LPY   96 (278)
T d1zq9a1          92 AN--LPY   96 (278)
T ss_dssp             EE--CCG
T ss_pred             cc--hHH
Confidence            77  454

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=0.00021  Score=61.78  Aligned_cols=122  Identities=14%  Similarity=0.148  Sum_probs=80.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhh--hh-ccCCCeEe
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRS--IV-ASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~--~~-~~~~~~~d  305 (420)
                      ++..|||+||+.|.++..+++. .+...++|+|+.+-           ..++++.++++|..+....  .. ......+|
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D   90 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ   90 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCccee
Confidence            4688999999999999998876 55688999998762           3467899999999764211  10 01356799


Q ss_pred             EEEEeC-CCCCCCCc--chhh-hhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHHHHc
Q 014711          306 LVSIQC-PNPDFNRP--EHRW-RMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEY  364 (420)
Q Consensus       306 ~i~~~f-pdp~~k~~--~~k~-Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l~~~  364 (420)
                      .|.... ||.. -.+  ++.+ --+....+..+.++|++||.|++.. +... ....+..++.+
T Consensus        91 lVlSD~ap~~s-g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-~~~l~~~l~~~  152 (180)
T d1ej0a_          91 VVMSDMAPNMS-GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-FDEYLREIRSL  152 (180)
T ss_dssp             EEEECCCCCCC-SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-HHHHHHHHHHH
T ss_pred             EEEecccchhc-ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-HHHHHHHHHhh
Confidence            998753 2221 111  1111 0112466778899999999999985 3333 33455555553

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=1.3e-05  Score=73.33  Aligned_cols=59  Identities=12%  Similarity=0.057  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  292 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~  292 (420)
                      ++..|||||||.|.+|..|++.  ..+++++|+++.+++..+++..  ...|+.++++|+..+
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~~~~ii~~D~l~~   79 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPF--LGPKLTIYQQDAMTF   79 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTT--TGGGEEEECSCGGGC
T ss_pred             CCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhh--hccchhHHhhhhhhh
Confidence            4678999999999999999987  4689999999999998876432  235899999999876

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.69  E-value=5.9e-05  Score=74.00  Aligned_cols=127  Identities=18%  Similarity=0.164  Sum_probs=87.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCC-------------CCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhh
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRK-------------DLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFR  294 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P-------------~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~  294 (420)
                      .+..|+|-.||+|.+++.+.+...             +.++.|+|+++.+...|+-++.-++..  +..+.+.|..... 
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~-  240 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE-  240 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC-
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh-
Confidence            357899999999999998877532             245999999999999999988777753  4566777776431 


Q ss_pred             hhhccCCCeEeEEEEeCCCCCCCCcc-----------hhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH-----HHHHHH
Q 014711          295 SIVASYPGKLILVSIQCPNPDFNRPE-----------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----VMLRMK  358 (420)
Q Consensus       295 ~~~~~~~~~~d~i~~~fpdp~~k~~~-----------~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~-----~~~~~~  358 (420)
                           ....||.|..+  .|+-....           .+.+-.+-.|+..+.+.|++||++.+.+....     ....++
T Consensus       241 -----~~~~fD~Ii~N--PPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR  313 (425)
T d2okca1         241 -----PSTLVDVILAN--PPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIR  313 (425)
T ss_dssp             -----CSSCEEEEEEC--CCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHH
T ss_pred             -----cccccceEEec--CCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHH
Confidence                 35689999998  44421110           00111234699999999999999888754322     223456


Q ss_pred             HHHHHc
Q 014711          359 QQFLEY  364 (420)
Q Consensus       359 ~~l~~~  364 (420)
                      +.+.+.
T Consensus       314 ~~Ll~~  319 (425)
T d2okca1         314 KRLLQD  319 (425)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            655544

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.66  E-value=6.2e-05  Score=67.86  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhh-hhhccCCCeE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFR-SIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~-~~~~~~~~~~  304 (420)
                      .+..|||||++.|..++.+|..    .++.+++|+|+.+......     ....+|++++++|..+... +.+  ....+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~~~~~~l--~~~~~  152 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDLTTFEHL--REMAH  152 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCSGGGGGG--SSSCS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccHHHHHHH--HhcCC
Confidence            4578999999999998877643    4789999999987543322     2235789999999865311 112  34457


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  350 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~  350 (420)
                      |.|++-  +.     |...-.. ..+  .+...|++||++++. |.
T Consensus       153 dlIfID--~~-----H~~~~v~-~~~--~~~~lLk~GG~iIve-D~  187 (232)
T d2bm8a1         153 PLIFID--NA-----HANTFNI-MKW--AVDHLLEEGDYFIIE-DM  187 (232)
T ss_dssp             SEEEEE--SS-----CSSHHHH-HHH--HHHHTCCTTCEEEEC-SC
T ss_pred             CEEEEc--CC-----cchHHHH-HHH--HHhcccCcCCEEEEE-cC
Confidence            777764  21     2211111 122  256899999999885 54

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.98  E-value=0.00021  Score=64.49  Aligned_cols=110  Identities=14%  Similarity=0.085  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      ....|+|+|||.|.++..++.+.+...+.|+++--+.-.. -......+..-+.+...+....    .  ++..+|.|.+
T Consensus        66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~ni~~~~~~~dv~~----l--~~~~~D~vlc  138 (257)
T d2p41a1          66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGWNLVRLQSGVDVFF----I--PPERCDTLLC  138 (257)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSCCTTT----S--CCCCCSEEEE
T ss_pred             CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-CccccccccccccchhhhhHHh----c--CCCcCCEEEe
Confidence            3567999999999999999988766788888884221000 0000011111245554443222    1  4678999987


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ....--+...-...|-  -++|+.+.++|+|||.|++..
T Consensus       139 Dm~ess~~~~vd~~Rt--l~vLela~~wLk~gg~FvvKV  175 (257)
T d2p41a1         139 DIGESSPNPTVEAGRT--LRVLNLVENWLSNNTQFCVKV  175 (257)
T ss_dssp             CCCCCCSSHHHHHHHH--HHHHHHHHHHCCTTCEEEEEE
T ss_pred             eCCCCCCCchhhhhhH--HHHHHHHHHHcccCCEEEEEE
Confidence            5311110000011122  267888999999999999885

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.95  E-value=0.0014  Score=59.13  Aligned_cols=78  Identities=21%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC---------CCcEEEEEcChhhhhhhhhccCC
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---------ITNGYFIATNATSTFRSIVASYP  301 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~---------l~nv~~~~~Da~~~~~~~~~~~~  301 (420)
                      .++|||.-||.|.-+..+|..  .++|+++|.++......+..+.+..         ..|++++++|+.+++..    ..
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~----~~  162 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----IT  162 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT----CS
T ss_pred             CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc----cC
Confidence            468999999999999999988  6899999999987766665544321         24799999999988642    35


Q ss_pred             CeEeEEEEeCCCCCCC
Q 014711          302 GKLILVSIQCPNPDFN  317 (420)
Q Consensus       302 ~~~d~i~~~fpdp~~k  317 (420)
                      .++|.||+   ||.+.
T Consensus       163 ~~~DvIYl---DPMFp  175 (250)
T d2oyra1         163 PRPQVVYL---DPMFP  175 (250)
T ss_dssp             SCCSEEEE---CCCCC
T ss_pred             CCCCEEEE---CCCCc
Confidence            67999987   66553

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0014  Score=65.58  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=81.4

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhC----C--------------CCeEEEEeCChHHHHHHHHHhHHhCCCc-----EEEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKR----K--------------DLNFLGLEVNGKLVTHCRDSLQLSGITN-----GYFIA  286 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~----P--------------~~~viGiDis~~~i~~A~~~~~~~~l~n-----v~~~~  286 (420)
                      .+..|+|-.||+|.+++...+..    .              ...++|+|+++.+...|+-++.-++...     -.+..
T Consensus       164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~  243 (524)
T d2ar0a1         164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  243 (524)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence            35689999999999998876541    1              1269999999999999998877665421     12333


Q ss_pred             cChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchh--------hhhhHHHHHHHHHhhccCCeEEEEEeCcHHH-----
Q 014711          287 TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR--------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----  353 (420)
Q Consensus       287 ~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k--------~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~-----  353 (420)
                      .|....  +..  ....||.|..|  .|+-......        ..-.+-.|+..+.+.|+|||++.+.+....+     
T Consensus       244 ~~~l~~--d~~--~~~kfD~Ii~N--PPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~  317 (524)
T d2ar0a1         244 GNTLGS--DGE--NLPKAHIVATN--PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK  317 (524)
T ss_dssp             SCTTSH--HHH--TSCCEEEEEEC--CCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTH
T ss_pred             hhhhhh--ccc--ccccceeEEec--CCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhh
Confidence            333321  111  34579999998  4442211100        0111236999999999999998887643222     


Q ss_pred             HHHHHHHHHHc
Q 014711          354 MLRMKQQFLEY  364 (420)
Q Consensus       354 ~~~~~~~l~~~  364 (420)
                      ...+++.|-+.
T Consensus       318 ~~~iR~~Ll~~  328 (524)
T d2ar0a1         318 GTDIRRDLMDK  328 (524)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHc
Confidence            23456655443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0053  Score=57.42  Aligned_cols=61  Identities=15%  Similarity=0.083  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014711          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST  292 (420)
Q Consensus       229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~  292 (420)
                      .++..|||||+|.|.+|..|.+..--.+++++|+++..+...++...   -.|+.++++|+..+
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred             cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence            34678999999999999999887323589999999999998877643   25799999999865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.76  E-value=0.015  Score=49.02  Aligned_cols=95  Identities=16%  Similarity=0.139  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeEeE
Q 014711          231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~d~  306 (420)
                      +..||=+|||. |..++.+|+..-..+++++|.+++.++.|++    .|...  ++..   +..+.+.+..  ...-+|.
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~~--~i~~~~~~~~~~v~~~t--~g~G~D~   99 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGATD--ILNYKNGHIEDQVMKLT--NGKGVDR   99 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCSE--EECGGGSCHHHHHHHHT--TTSCEEE
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCccc--cccccchhHHHHHHHHh--hccCcce
Confidence            45566699998 8888899988655689999999999888865    34322  2222   1222112221  2345898


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++-.-..+              ..+++..+.|+|+|++.+.
T Consensus       100 vid~~g~~--------------~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2         100 VIMAGGGS--------------ETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             EEECSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             EEEccCCH--------------HHHHHHHHHHhcCCEEEEE
Confidence            86653333              5678888999999999884

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.60  E-value=0.026  Score=48.48  Aligned_cols=111  Identities=12%  Similarity=0.050  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEE--EcChhhhhhhhhccCCCeEeE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI--ATNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~--~~Da~~~~~~~~~~~~~~~d~  306 (420)
                      .+..||-+|||. |..++.+|+......++.+|.++..++.|++.    |.. ..+.  ..|..+...+..  ....+|.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~-~~~~~~~~~~~~~i~~~t--~g~g~D~   97 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE-IADLSLDTPLHEQIAALL--GEPEVDC   97 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE-EEETTSSSCHHHHHHHHH--SSSCEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc-EEEeCCCcCHHHHHHHHh--CCCCcEE
Confidence            477899999998 66778888888778999999999999888653    432 1111  122222222222  3456888


Q ss_pred             EEEeCCCCCCCCcchhh-hhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRW-RMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~-Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++-..--+-.-..+... ..-.+..++...+.++|||++.+.
T Consensus        98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            76432111100011100 011247899999999999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.34  E-value=0.029  Score=47.24  Aligned_cols=99  Identities=18%  Similarity=0.134  Sum_probs=64.3

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEE--EcChhhhhhhhhc-cCCCeEe
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI--ATNATSTFRSIVA-SYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~--~~Da~~~~~~~~~-~~~~~~d  305 (420)
                      .+..||=+|||. |.+++.+|+..-..+|+++|.+++.++.|++    .|... .+-  ..|..+....... .....+|
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~-vi~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADL-TLNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSE-EEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccceE-EEeccccchHHHHHHHHHhhCCCCce
Confidence            367888899985 7888889988744589999999999988855    34332 121  1222222111110 0244589


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .|+-.-..|              ..++...+.|+|||++.+.
T Consensus       103 vvid~vG~~--------------~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         103 FILEATGDS--------------RALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             EEEECSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             EEeecCCch--------------hHHHHHHHHhcCCCEEEEE
Confidence            886543232              4678888999999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.43  E-value=0.021  Score=47.55  Aligned_cols=96  Identities=9%  Similarity=0.036  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..||-+||| .|.+++.+|+.. +++++++|.|++.++.|++    .|... .+...+-.+... .   ..+.+|.++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~----lGa~~-~i~~~~~~~~~~-~---~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGADH-YIATLEEGDWGE-K---YFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSE-EEEGGGTSCHHH-H---SCSCEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc----cCCcE-EeeccchHHHHH-h---hhcccceEE
Confidence            46788889999 677778888765 6899999999998887765    45432 222222112211 1   245789887


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .....+..            ..+....+.|+|+|++.+.
T Consensus        97 ~~~~~~~~------------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          97 VCASSLTD------------IDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             ECCSCSTT------------CCTTTGGGGEEEEEEEEEC
T ss_pred             EEecCCcc------------chHHHHHHHhhccceEEEe
Confidence            64332221            1123457899999999885

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.12  E-value=0.026  Score=50.57  Aligned_cols=114  Identities=14%  Similarity=0.065  Sum_probs=74.5

Q ss_pred             CCEEEEEcCCccHHHHHHHHhC----C------------------------------------CCeEEEEeCChHHHHHH
Q 014711          231 QPLVVDIGSGNGLFLLGMARKR----K------------------------------------DLNFLGLEVNGKLVTHC  270 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~----P------------------------------------~~~viGiDis~~~i~~A  270 (420)
                      +..++|=-||+|.+.++.|...    |                                    ...++|.|+++.+++.|
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            4569999999999999877621    1                                    13468999999999988


Q ss_pred             H---HHhHHhCCCc-EEEEEcChhhhhhh-hhccCCCeEeEEEEeCCCCCCCCcc----hhhhhhHHHHHHHHHhhccCC
Q 014711          271 R---DSLQLSGITN-GYFIATNATSTFRS-IVASYPGKLILVSIQCPNPDFNRPE----HRWRMVQRSLVEAVSDLLVHD  341 (420)
Q Consensus       271 ~---~~~~~~~l~n-v~~~~~Da~~~~~~-~~~~~~~~~d~i~~~fpdp~~k~~~----~k~Rl~~~~~l~~i~~~Lkpg  341 (420)
                      +   +|+...|+.. +.+.+.|+.+..+. .+. .+.....|.+|  .|+=..-.    .-.+.+ .++...+.+.|...
T Consensus       131 ~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~-~~~~~GlIVtN--PPYGERl~~~~~~~~~~~-~~~~~~l~~~~p~~  206 (249)
T d1o9ga_         131 RRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTD--LPYGERTHWEGQVPGQPV-AGLLRSLASALPAH  206 (249)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEE--CCGGGSSSSSSCCCHHHH-HHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHcCCCceeeeeecchhccCcchhcc-CCCCCCEEEeC--CCccccccccccchHHHH-HHHHHHHHccCCCC
Confidence            4   5888888865 99999998765321 111 24456788888  55511111    001222 47777888888555


Q ss_pred             eEEEEEeC
Q 014711          342 GKVFLQSD  349 (420)
Q Consensus       342 G~l~~~td  349 (420)
                      ..+++ |+
T Consensus       207 s~~~i-t~  213 (249)
T d1o9ga_         207 AVIAV-TD  213 (249)
T ss_dssp             CEEEE-EE
T ss_pred             cEEEE-eC
Confidence            55544 53

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.03  E-value=0.081  Score=46.23  Aligned_cols=81  Identities=15%  Similarity=0.054  Sum_probs=53.8

Q ss_pred             EEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcc-hhh-----h--hhHHHHHHHHHhhccCCeEEEEEeCcHHHH
Q 014711          283 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE-HRW-----R--MVQRSLVEAVSDLLVHDGKVFLQSDIEEVM  354 (420)
Q Consensus       283 ~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~-~k~-----R--l~~~~~l~~i~~~LkpgG~l~~~td~~~~~  354 (420)
                      +++++|..+.+.. +  +++++|+|+..  .|+.-... ...     .  -...+.+.++.++|+|||.+++..+... .
T Consensus         6 ~i~~gDcle~l~~-l--pd~sVdliitd--PPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~-~   79 (256)
T d1g60a_           6 KIHQMNCFDFLDQ-V--ENKSVQLAVID--PPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFN-C   79 (256)
T ss_dssp             SEEECCHHHHHHH-S--CTTCEEEEEEC--CCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHH-H
T ss_pred             EEEeccHHHHHhh-C--cCCCcCEEEEC--CCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchh-h
Confidence            5789999998664 3  58999999885  34322111 000     0  0124678899999999999987665443 4


Q ss_pred             HHHHHHHHHcCCcee
Q 014711          355 LRMKQQFLEYGKGKL  369 (420)
Q Consensus       355 ~~~~~~l~~~g~~~~  369 (420)
                      ..+.+.+.+.+|...
T Consensus        80 ~~~~~~~~~~g~~~~   94 (256)
T d1g60a_          80 AFICQYLVSKGMIFQ   94 (256)
T ss_dssp             HHHHHHHHHTTCEEE
T ss_pred             hhhhhhhhcccceee
Confidence            456777888887653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.00  E-value=0.12  Score=40.60  Aligned_cols=99  Identities=9%  Similarity=0.027  Sum_probs=69.1

Q ss_pred             CCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCC
Q 014711          239 SGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR  318 (420)
Q Consensus       239 cG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~  318 (420)
                      ||.|..+..+++..-+..++.+|.+++.++..+.    .   ++.++.+|+.+- .-+-...-...+.+.+..+|.-   
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~---~~~~i~Gd~~~~-~~L~~a~i~~A~~vi~~~~~d~---   74 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----S---GANFVHGDPTRV-SDLEKANVRGARAVIVNLESDS---   74 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----T---TCEEEESCTTSH-HHHHHTTCTTCSEEEECCSSHH---
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----c---CccccccccCCH-HHHHHhhhhcCcEEEEeccchh---
Confidence            7889999999999878889999999998765533    2   468899999764 1111112345677777654431   


Q ss_pred             cchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHH
Q 014711          319 PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLR  356 (420)
Q Consensus       319 ~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~  356 (420)
                              ..-++....+.+.|...++..++.+.+.+.
T Consensus        75 --------~n~~~~~~~r~~~~~~~iia~~~~~~~~~~  104 (129)
T d2fy8a1          75 --------ETIHCILGIRKIDESVRIIAEAERYENIEQ  104 (129)
T ss_dssp             --------HHHHHHHHHHHHCSSSCEEEECSSGGGHHH
T ss_pred             --------hhHHHHHHHHHHCCCceEEEEEcCHHHHHH
Confidence                    123456667888999999998887776443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.13  Score=42.58  Aligned_cols=95  Identities=21%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE--cChhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~--~Da~~~~~~~~~~~~~~~d  305 (420)
                      ++.+||=.|+  |.|..++.+|+.. +.++++++.+++..+.+++    .|...+ +-.  .|..+.+.+..  ....+|
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~v-i~~~~~~~~~~i~~~t--~~~g~d   99 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQ----NGAHEV-FNHREVNYIDKIKKYV--GEKGID   99 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEE-EETTSTTHHHHHHHHH--CTTCEE
T ss_pred             CCCEEEEEecccccccccccccccc-Ccccccccccccccccccc----cCcccc-cccccccHHHHhhhhh--ccCCce
Confidence            4678999997  5677888889876 6799999999887766643    565432 111  12222212222  356688


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .++-.               .....++...++|+|+|++++.
T Consensus       100 ~v~d~---------------~g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         100 IIIEM---------------LANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEES---------------CHHHHHHHHHHHEEEEEEEEEC
T ss_pred             EEeec---------------ccHHHHHHHHhccCCCCEEEEE
Confidence            88654               1235778888999999999874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.79  E-value=0.039  Score=48.38  Aligned_cols=44  Identities=25%  Similarity=0.353  Sum_probs=39.8

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhH
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ  275 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~  275 (420)
                      ++.+|||-=||+|..+.+..+.  +.+++|+|++++.++.|+++++
T Consensus       212 ~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         212 PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence            5789999999999999876666  7899999999999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.71  E-value=0.028  Score=50.97  Aligned_cols=47  Identities=21%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG  278 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~  278 (420)
                      .+.+|||.=||+|..+.+..+.  +.+++|+|++++.++.|++++.+..
T Consensus       250 ~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         250 PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHhcc
Confidence            5789999999999998887666  7899999999999999999876543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.25  E-value=0.34  Score=39.50  Aligned_cols=98  Identities=14%  Similarity=0.113  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcCh----hhhhhhhhccCCCeE
Q 014711          230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA----TSTFRSIVASYPGKL  304 (420)
Q Consensus       230 ~~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da----~~~~~~~~~~~~~~~  304 (420)
                      .+..||=+||| .|.+++.+|+.. ..+++++|.++..++.|++.    +.. ..+...+.    .+.....-......+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~----ga~-~~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC----GAD-VTLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----TCS-EEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHc----CCc-EEEeccccccccchhhhhhhcccccCC
Confidence            35678889999 566677777765 57999999999998888663    332 22322211    111111100023457


Q ss_pred             eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      |.++-.-..              +..++...+.|+|+|++.+.
T Consensus       100 D~vid~~g~--------------~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2         100 NVTIDCSGN--------------EKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             SEEEECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             ceeeecCCC--------------hHHHHHHHHHHhcCCceEEE
Confidence            877543111              36788889999999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.23  E-value=0.35  Score=39.89  Aligned_cols=98  Identities=14%  Similarity=0.106  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCccH-HHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGL-FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~-~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..||=+|||.-. .++.+|+......++.+|.++..++.|++    .|...  ++..+-.+.........++.+|.++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~~--~i~~~~~~~~~~i~~~t~gg~D~vi  101 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGATH--VINSKTQDPVAAIKEITDGGVNFAL  101 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCeE--EEeCCCcCHHHHHHHHcCCCCcEEE
Confidence            36778889998644 46667877777789999999998888765    34432  3333222222211111245789886


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      -.-..              +..++...+.|+|+|++.+.
T Consensus       102 d~~G~--------------~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         102 ESTGS--------------PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             ECSCC--------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             EcCCc--------------HHHHHHHHhcccCceEEEEE
Confidence            64222              36888999999999999884

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.17  E-value=0.15  Score=42.57  Aligned_cols=97  Identities=13%  Similarity=0.118  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEE-EEEcC--hhhhhhhhhccCCCeEe
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATN--ATSTFRSIVASYPGKLI  305 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~-~~~~D--a~~~~~~~~~~~~~~~d  305 (420)
                      .+..||=+|||. |..++.+|+..-...++.+|.++..++.|++    .|...+- ....|  .... ....  ...-+|
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~-~~~~--~~~G~d  100 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDV-ITEL--TAGGVD  100 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHH-HHHH--HTSCBS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhh-Hhhh--hcCCCc
Confidence            367788899998 8888899998876789999999998877755    4443221 11111  1111 1111  245688


Q ss_pred             EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014711          306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  347 (420)
Q Consensus       306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~  347 (420)
                      .++-.-..              +..+++..+.|++| |++.+.
T Consensus       101 ~vie~~G~--------------~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2         101 YSLDCAGT--------------AQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             EEEESSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EEEEeccc--------------chHHHHHHHHhhcCCeEEEec
Confidence            88654222              37889999999996 999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.38  Score=39.44  Aligned_cols=100  Identities=12%  Similarity=0.040  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCCccHH-HHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE-cChhhhhhhhhccCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLF-LLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA-TNATSTFRSIVASYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~-~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~-~Da~~~~~~~~~~~~~~~d~i  307 (420)
                      .+..||=+|||.... ++.+|+.....+++++|.++..++.|++    .|...+.... .|..+.....-......+|.+
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvv  101 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEGQLGCKPEVT  101 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCcccccccccccccccccccccCCCCceEE
Confidence            356788899987555 5556776655589999999999888755    3543222221 122111111000013457887


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +-.-..              +..++...+.|++||++.+.
T Consensus       102 id~~G~--------------~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2         102 IECTGA--------------EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             EECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EeccCC--------------chhHHHHHHHhcCCCEEEEE
Confidence            654222              26789999999999999885

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.36  E-value=0.092  Score=46.50  Aligned_cols=50  Identities=14%  Similarity=0.117  Sum_probs=43.0

Q ss_pred             ccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh
Q 014711          225 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS  277 (420)
Q Consensus       225 ~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~  277 (420)
                      .+.+ ++.+|||-=||+|..+++-.+.  +.+++|+|+++..++.|++++...
T Consensus       203 ~~s~-~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         203 ALSH-PGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHSC-TTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hhcC-CCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            3443 5889999999999998887777  689999999999999999998753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.35  E-value=0.14  Score=42.01  Aligned_cols=98  Identities=14%  Similarity=0.224  Sum_probs=64.5

Q ss_pred             CCCEEEEEcC-C-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeE
Q 014711          230 AQPLVVDIGS-G-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLIL  306 (420)
Q Consensus       230 ~~~~vLDIGc-G-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~  306 (420)
                      .+..||=+|| | .|..++.+++......++++|.+++.++.+++    .|...  ++..+-.+....... .....+|.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~~--~i~~~~~~~~~~~~~~~~~~~~d~  100 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGADY--VINASMQDPLAEIRRITESKGVDA  100 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCce--eeccCCcCHHHHHHHHhhcccchh
Confidence            4678999997 3 56667778887767899999999998887765    34432  222222222221111 13456888


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++-.-..              +..++...+.|+|||++++.
T Consensus       101 vid~~g~--------------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2         101 VIDLNNS--------------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             EEESCCC--------------HHHHTTGGGGEEEEEEEEEC
T ss_pred             hhccccc--------------chHHHhhhhhcccCCEEEEe
Confidence            7654221              26778888999999999875

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.17  E-value=0.25  Score=43.42  Aligned_cols=84  Identities=6%  Similarity=-0.011  Sum_probs=53.4

Q ss_pred             cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcc-hhhh----hhHHHHHHHHHhhccCCeEEEEEeCc-----
Q 014711          281 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE-HRWR----MVQRSLVEAVSDLLVHDGKVFLQSDI-----  350 (420)
Q Consensus       281 nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~-~k~R----l~~~~~l~~i~~~LkpgG~l~~~td~-----  350 (420)
                      +-.|+.+|..+.+.. +  +++++|+|+..  .|+.-... ....    -.....+.++.|+|||+|.+++..+.     
T Consensus         4 ~~~~~~~D~le~l~~-l--~d~SIDliitD--PPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~   78 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAK-L--PDDSVQLIICD--PPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGE   78 (279)
T ss_dssp             EEEEEECCHHHHHHT-S--CTTCEEEEEEC--CCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCC
T ss_pred             cceEEechHHHHHhh-C--cCCCccEEEEC--CCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcccccc
Confidence            446889999998754 3  58999999885  34321111 1100    01246788999999999999985432     


Q ss_pred             ---HHHHHHHHHHHHHcCCcee
Q 014711          351 ---EEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       351 ---~~~~~~~~~~l~~~g~~~~  369 (420)
                         ......+...+.+.++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~  100 (279)
T d1eg2a_          79 AGSGDLISIISHMRQNSKMLLA  100 (279)
T ss_dssp             TTBCCHHHHHHHHHHHCCCEEE
T ss_pred             ccccchhhHHHHHHhccCceee
Confidence               1334445666777776543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.01  E-value=0.4  Score=39.33  Aligned_cols=97  Identities=10%  Similarity=0.145  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCCccHH-HHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeEE
Q 014711          230 AQPLVVDIGSGNGLF-LLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILV  307 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~-~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~i  307 (420)
                      ++..||=+|||.-.. ++.+++..-...++++|.+++.++.+++    .+...  ++..+-... ..... .....+|.+
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~~--~i~~~~~~~-~~~~~~~~~~g~d~v  104 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGADH--VVDARRDPV-KQVMELTRGRGVNVA  104 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCSE--EEETTSCHH-HHHHHHTTTCCEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccce--eecCcccHH-HHHHHhhCCCCceEE
Confidence            367788899987655 4667777666799999999998877765    33332  222221111 11111 123458888


Q ss_pred             EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      +-....              ...++...+.|+++|++.+.
T Consensus       105 id~~g~--------------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         105 MDFVGS--------------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EESSCC--------------HHHHHHGGGGEEEEEEEEEC
T ss_pred             EEecCc--------------chHHHHHHHHHhCCCEEEEE
Confidence            665222              26788899999999999874

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.66  E-value=0.63  Score=36.35  Aligned_cols=106  Identities=10%  Similarity=0.105  Sum_probs=65.8

Q ss_pred             CCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCC
Q 014711          239 SGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF  316 (420)
Q Consensus       239 cG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~  316 (420)
                      ||.|.++..+++.  .-+..|+.+|.+++.++.++++   .   ++.++++|+.+.. -+-...-...|.+.+..++.- 
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~---~~~vi~Gd~~~~~-~l~~~~i~~a~~vv~~t~~d~-   77 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---DALVINGDCTKIK-TLEDAGIEDADMYIAVTGKEE-   77 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHH-HHHHTTTTTCSEEEECCSCHH-
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h---hhhhccCcccchh-hhhhcChhhhhhhcccCCcHH-
Confidence            5668888888876  2467899999999988876543   1   3578899998641 111102245677777544431 


Q ss_pred             CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          317 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       317 k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                               . .-++..+.+.+.+.-.+. .+..+.+    .+.+++.|..
T Consensus        78 ---------~-N~~~~~~~k~~~~~~iI~-~~~~~~~----~~~l~~~G~d  113 (132)
T d1lssa_          78 ---------V-NLMSSLLAKSYGINKTIA-RISEIEY----KDVFERLGVD  113 (132)
T ss_dssp             ---------H-HHHHHHHHHHTTCCCEEE-ECSSTTH----HHHHHHTTCS
T ss_pred             ---------H-HHHHHHHHHHcCCceEEE-EecCHHH----HHHHHHCCCC
Confidence                     1 134455667788875554 4444444    3456677764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.30  E-value=0.4  Score=37.45  Aligned_cols=106  Identities=12%  Similarity=0.077  Sum_probs=64.6

Q ss_pred             CCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCC
Q 014711          239 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF  316 (420)
Q Consensus       239 cG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~  316 (420)
                      ||.|.++..+|+..  -+..|+.+|.+++.++.++.    .+   ...+.+|+.+. .-+-...-...|.+++..++.. 
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~---~~~~~gd~~~~-~~l~~a~i~~a~~vi~~~~~~~-   76 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA---THAVIANATEE-NELLSLGIRNFEYVIVAIGANI-   76 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TC---SEEEECCTTCT-THHHHHTGGGCSEEEECCCSCH-
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hC---Ccceeeecccc-hhhhccCCccccEEEEEcCchH-
Confidence            46678877777662  46789999999998876632    22   24567888763 1110001235677777665542 


Q ss_pred             CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014711          317 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       317 k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~  367 (420)
                                ....+-...+.+.|...++..+..+.+    .+.|++.|..
T Consensus        77 ----------~~~~~~~~~~~~~~~~~iiar~~~~~~----~~~l~~~Gad  113 (134)
T d2hmva1          77 ----------QASTLTTLLLKELDIPNIWVKAQNYYH----HKVLEKIGAD  113 (134)
T ss_dssp             ----------HHHHHHHHHHHHTTCSEEEEECCSHHH----HHHHHHHTCS
T ss_pred             ----------HhHHHHHHHHHHcCCCcEEeecccHhH----HHHHHHCCCC
Confidence                      123444455556677788888877665    3345666654

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=90.72  E-value=1.7  Score=38.46  Aligned_cols=122  Identities=11%  Similarity=0.049  Sum_probs=78.5

Q ss_pred             EEEEEcCCccHHHHHHHHhCCCCe-EEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014711          233 LVVDIGSGNGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  311 (420)
Q Consensus       233 ~vLDIGcG~G~~~~~lA~~~P~~~-viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f  311 (420)
                      .|||+=||-|.+...|-+.  +.+ +.++|+++.+.+.-+.|.     ++ .++++|+.++....+    ..+|.++..+
T Consensus         2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~~-~~~~~Di~~~~~~~~----~~~dll~~g~   69 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----SA-KLIKGDISKISSDEF----PKCDGIIGGP   69 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----CS-EEEESCTTTSCGGGS----CCCSEEEECC
T ss_pred             eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----CC-CCccCChhhCCHhHc----ccccEEeecc
Confidence            5899999999998888766  344 559999999888776663     22 457899988743322    3589998876


Q ss_pred             C-CCCCCCcchh-----h-hhhHHHHHHHHHhhccCCeEEEEEe-------CcHHHHHHHHHHHHHcCCcee
Q 014711          312 P-NPDFNRPEHR-----W-RMVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       312 p-dp~~k~~~~k-----~-Rl~~~~~l~~i~~~LkpgG~l~~~t-------d~~~~~~~~~~~l~~~g~~~~  369 (420)
                      | .++......+     | .++ .++++ +.+.++|. +|+++-       +...++..++..+.+.|+...
T Consensus        70 PCq~fS~ag~~~g~~d~r~~l~-~~~~~-~i~~~~Pk-~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~  138 (324)
T d1dcta_          70 PCQSWSEGGSLRGIDDPRGKLF-YEYIR-ILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVH  138 (324)
T ss_dssp             CCTTTSSSSCCCCSSSHHHHHH-HHHHH-HHHHHCCS-EEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEE
T ss_pred             cccccccccccccccccccchH-HHHHH-HHHhhCCc-eeeccccccccccccchhhHHHHhHHhhCCCccc
Confidence            5 3333222211     1 222 24444 55677885 455542       345667778888888776543

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=90.41  E-value=1.4  Score=39.43  Aligned_cols=124  Identities=11%  Similarity=0.029  Sum_probs=82.0

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      ++-++||+-||-|.+...|-+.  +. .+.++|+++.+++.-+.|..     +  ..++|+.++....+    ..+|.++
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~-----~--~~~~Di~~~~~~~~----~~~Dll~   76 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG-----E--KPEGDITQVNEKTI----PDHDILC   76 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS-----C--CCBSCGGGSCGGGS----CCCSEEE
T ss_pred             CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCC-----C--CCcCchhcCchhhc----ceeeeee
Confidence            4678999999999999988766  33 46779999999998887752     1  12588887633222    3589999


Q ss_pred             EeCC-CCCCCCcch------hhhhhHHHHHHHHHhhccCCeEEEEE-------eCcHHHHHHHHHHHHHcCCcee
Q 014711          309 IQCP-NPDFNRPEH------RWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGKL  369 (420)
Q Consensus       309 ~~fp-dp~~k~~~~------k~Rl~~~~~l~~i~~~LkpgG~l~~~-------td~~~~~~~~~~~l~~~g~~~~  369 (420)
                      ..+| .|+......      +..++ ..+++ +.+.++|. +|+++       .+....++.+++.|++.|+...
T Consensus        77 ggpPCq~fS~ag~~~g~~d~r~~l~-~~~~~-~i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~  148 (327)
T d2c7pa1          77 AGFPCQAFSISGKQKGFEDSRGTLF-FDIAR-IVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFH  148 (327)
T ss_dssp             EECCCTTTCTTSCCCGGGSTTSCHH-HHHHH-HHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCE
T ss_pred             cccccchhhhhhhhcCCcccchhHH-HHHHH-HHhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCcce
Confidence            8876 555333211      11232 34444 44667885 44454       2445567888899999887654

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.83  Score=41.10  Aligned_cols=131  Identities=11%  Similarity=0.044  Sum_probs=76.1

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +-.++|+-||.|.+...|-+..=+. .+.++|+++.+++.-+.|.     ++..+++.|+.++....++  ...+|.++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~--~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFD--RLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHH--HHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcC--CCCccEEEe
Confidence            3569999999999988876652122 3679999999988777653     3456778888876433332  236899988


Q ss_pred             eCC-CCCCCCcchhh----h-hhHHHHHHHHHhhc--cCCeEEEEEe-C---cHHHHHHHHHHHHHcCCceeE
Q 014711          310 QCP-NPDFNRPEHRW----R-MVQRSLVEAVSDLL--VHDGKVFLQS-D---IEEVMLRMKQQFLEYGKGKLV  370 (420)
Q Consensus       310 ~fp-dp~~k~~~~k~----R-l~~~~~l~~i~~~L--kpgG~l~~~t-d---~~~~~~~~~~~l~~~g~~~~~  370 (420)
                      .+| .++....+.+.    | -+-..+++.+ +.+  ||- +|+++- .   ....++.+++.|++.|+...+
T Consensus        75 gpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i-~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~  145 (343)
T d1g55a_          75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDIL-PRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQE  145 (343)
T ss_dssp             CCC------------------CHHHHHHHHG-GGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             ecccccccccccccccccccccccchhhhhH-hhhcCCCc-eeeeeccCCcccchhhHHHHhhhhccccccce
Confidence            765 34433222111    1 1112333333 223  575 455651 1   123467788899999976543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.55  E-value=1.5  Score=36.01  Aligned_cols=112  Identities=8%  Similarity=-0.013  Sum_probs=67.3

Q ss_pred             EEEEEcCCc-cHHHHHHHHhCCCCeEEEE-eCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          233 LVVDIGSGN-GLFLLGMARKRKDLNFLGL-EVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       233 ~vLDIGcG~-G~~~~~lA~~~P~~~viGi-Dis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      ++.=||||. |..-+...+..|+.+++|+ |.+++..+   +.+.+.+.....-...|..+++      .+..+|.|++.
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll------~~~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAK---AFATANNYPESTKIHGSYESLL------EDPEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHH---HHHHHTTCCTTCEEESSHHHHH------HCTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccc---cchhccccccceeecCcHHHhh------hccccceeeec
Confidence            356689995 5554555566789999987 88876543   3334455543222356666664      24568999886


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE---eCcHHHHHHHHHHHHHcCCc
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMKQQFLEYGKG  367 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~---td~~~~~~~~~~~l~~~g~~  367 (420)
                      -|+.              .-++.+..+|+.|=-++++   +.+..-.+++.+..++.+..
T Consensus        74 tp~~--------------~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          74 LPTS--------------LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             CCGG--------------GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ccch--------------hhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence            3332              1234455667777666664   12344466777777777654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.26  E-value=0.81  Score=37.06  Aligned_cols=91  Identities=21%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             EEEEcCCc-cHH-HHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014711          234 VVDIGSGN-GLF-LLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  311 (420)
Q Consensus       234 vLDIGcG~-G~~-~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f  311 (420)
                      |+=||||. |.. +..|.+..++.+++|+|.+++.++.|++.    +..+  -...+....       .....|.|++.-
T Consensus         4 I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~--~~~~~~~~~-------~~~~~dlIila~   70 (171)
T d2g5ca2           4 VLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID--EGTTSIAKV-------EDFSPDFVMLSS   70 (171)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS--EEESCGGGG-------GGTCCSEEEECS
T ss_pred             EEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch--hhhhhhhhh-------hccccccccccC
Confidence            66689986 443 33555566788999999999998887653    3221  111222211       133568877753


Q ss_pred             CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014711          312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      |..           ...++++++...++++-.+.-.+
T Consensus        71 p~~-----------~~~~vl~~l~~~~~~~~ii~d~~   96 (171)
T d2g5ca2          71 PVR-----------TFREIAKKLSYILSEDATVTDQG   96 (171)
T ss_dssp             CHH-----------HHHHHHHHHHHHSCTTCEEEECC
T ss_pred             Cch-----------hhhhhhhhhhccccccccccccc
Confidence            311           12478889999999987776443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.40  E-value=0.67  Score=37.40  Aligned_cols=95  Identities=13%  Similarity=0.142  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEE-EEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~-~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +.+||=.|||.-.++.....+....+++++|.+++.++.+++    .|...+.- ...|....+....   ++ .+.++.
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~~---~~-~~~~v~   99 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKV---GG-VHAAVV   99 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHH---SS-EEEEEE
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhccccc---CC-CceEEe
Confidence            566777899886665444333456799999999998877755    45432211 0112222212111   33 444433


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      .-  +            ....++...+.|+|+|++++.
T Consensus       100 ~~--~------------~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2         100 TA--V------------SKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             SS--C------------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             ec--C------------CHHHHHHHHHHhccCCceEec
Confidence            31  1            136788999999999999884

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=87.99  E-value=0.54  Score=41.83  Aligned_cols=83  Identities=17%  Similarity=0.021  Sum_probs=53.3

Q ss_pred             cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCc-------chhh-hhhHHHHHHHHHhhccCCeEEEEEeCc--
Q 014711          281 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP-------EHRW-RMVQRSLVEAVSDLLVHDGKVFLQSDI--  350 (420)
Q Consensus       281 nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~-------~~k~-Rl~~~~~l~~i~~~LkpgG~l~~~td~--  350 (420)
                      +=.++++|..+.+.. +  +++++|+|++.  .|+.-..       .+.. .-...+.+.+++++|+|+|.+++..+.  
T Consensus        12 ~~~l~~GD~le~l~~-l--~~~sVdli~tD--PPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~   86 (320)
T d1booa_          12 NGSMYIGDSLELLES-F--PEESISLVMTS--PPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAY   86 (320)
T ss_dssp             SEEEEESCHHHHGGG-S--CSSCEEEEEEC--CCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred             CCEEEehhHHHHHhh-C--ccCCCCEEEEC--CCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchh
Confidence            458999999998654 4  58999999886  4442211       1111 111246889999999999999986532  


Q ss_pred             --------HHHHHHHHHHHHHcCCce
Q 014711          351 --------EEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       351 --------~~~~~~~~~~l~~~g~~~  368 (420)
                              ..........+...++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (320)
T d1booa_          87 MKGVPARSIYNFRVLIRMIDEVGFFL  112 (320)
T ss_dssp             ETTEEEECCHHHHHHHHHHHTTCCEE
T ss_pred             hcccccccchhHHHHHHHHHhcCceE
Confidence                    223344555566666543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.84  E-value=1.1  Score=36.10  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014711          231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  309 (420)
Q Consensus       231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~  309 (420)
                      +..||=+|||. |..++.+|+.. ..+++++|.+++.++.+++    .|...  ++..+-.+..........+ .+.++.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~----~Ga~~--~i~~~~~~~~~~~~~~~~g-~~~~i~   99 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARK----LGASL--TVNARQEDPVEAIQRDIGG-AHGVLV   99 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHHSS-EEEEEE
T ss_pred             CCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhc----cCccc--cccccchhHHHHHHHhhcC-Cccccc
Confidence            55666699986 45566667766 5899999999998887754    45432  2222222221111110123 333333


Q ss_pred             eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ....              +..++...+.|+|+|++.+.
T Consensus       100 ~~~~--------------~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2         100 TAVS--------------NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             CCSC--------------HHHHHHHHTTEEEEEEEEEC
T ss_pred             cccc--------------chHHHHHHHHhcCCcEEEEE
Confidence            2111              25678889999999999874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.52  E-value=1.2  Score=35.45  Aligned_cols=110  Identities=9%  Similarity=0.018  Sum_probs=68.7

Q ss_pred             CCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeEEEEeCCCCC
Q 014711          239 SGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQCPNPD  315 (420)
Q Consensus       239 cG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~i~~~fpdp~  315 (420)
                      ||.|.++..+++.  .-+..++.+|.+++......+...   ..++.++.+|+.+-  +.+. ..-...+.+.+..++..
T Consensus         9 ~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~---~~~~~vi~Gd~~d~--~~L~~a~i~~a~~vi~~~~~d~   83 (153)
T d1id1a_           9 CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDS--SVLKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSH--HHHHHHTTTTCSEEEECSSCHH
T ss_pred             ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh---cCCcEEEEccCcch--HHHHHhccccCCEEEEccccHH
Confidence            5557777777665  236789999999876543333332   23578999999774  1111 12345777777654431


Q ss_pred             CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014711          316 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       316 ~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~  368 (420)
                                . .-.+....+.+.|.-.++..++.+.+.    +.+++.|...
T Consensus        84 ----------~-n~~~~~~~r~~~~~~~iia~~~~~~~~----~~l~~~Gad~  121 (153)
T d1id1a_          84 ----------D-NAFVVLSAKDMSSDVKTVLAVSDSKNL----NKIKMVHPDI  121 (153)
T ss_dssp             ----------H-HHHHHHHHHHHTSSSCEEEECSSGGGH----HHHHTTCCSE
T ss_pred             ----------H-HHHHHHHHHHhCCCCceEEEEcCHHHH----HHHHHCCCCE
Confidence                      1 134455677788998898888776653    3456666543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=87.22  E-value=0.67  Score=43.75  Aligned_cols=51  Identities=20%  Similarity=0.132  Sum_probs=44.1

Q ss_pred             CCCEEEEEcCCccHHHHHHHHhCCC--CeEEEEeCChHHHHHHHHHhHHhCCC
Q 014711          230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGIT  280 (420)
Q Consensus       230 ~~~~vLDIGcG~G~~~~~lA~~~P~--~~viGiDis~~~i~~A~~~~~~~~l~  280 (420)
                      ++.+++|||+=.|.++..+++..++  .+++++|.++...+..++++..+...
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            5789999999999999988877654  58999999999999999998876543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=85.60  E-value=1.2  Score=36.05  Aligned_cols=93  Identities=13%  Similarity=0.193  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..||=+|||. |.+++.+|+.. ..+++++|.+++..+.+++    .|...  ++..+-.....    .....+|.++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~----lGad~--~i~~~~~~~~~----~~~~~~D~vi   98 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGADE--VVNSRNADEMA----AHLKSFDFIL   98 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSE--EEETTCHHHHH----TTTTCEEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhc----cCCcE--EEECchhhHHH----HhcCCCceee
Confidence            366777799975 67778888876 6788899999987776654    45432  22222211111    1245689887


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      -.-..+              ..+....+.|+|+|++.+.
T Consensus        99 d~~g~~--------------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          99 NTVAAP--------------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             ECCSSC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred             eeeecc--------------hhHHHHHHHHhcCCEEEEe
Confidence            654444              2456677899999999985

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=83.12  E-value=0.79  Score=42.62  Aligned_cols=21  Identities=14%  Similarity=0.265  Sum_probs=17.9

Q ss_pred             HHHHHHHHhhccCCeEEEEEe
Q 014711          328 RSLVEAVSDLLVHDGKVFLQS  348 (420)
Q Consensus       328 ~~~l~~i~~~LkpgG~l~~~t  348 (420)
                      ..||+.=++-|+|||++++..
T Consensus       189 ~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         189 ALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             HHHHHHHHHHBCTTCEEEEEE
T ss_pred             HHHHHHHHHHhcCCcEEEEEE
Confidence            468888899999999999864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.02  E-value=1.4  Score=35.83  Aligned_cols=94  Identities=13%  Similarity=0.041  Sum_probs=60.0

Q ss_pred             CCEEEEEcCC--ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE--cChhhhhhhhhccCCCeEeE
Q 014711          231 QPLVVDIGSG--NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLIL  306 (420)
Q Consensus       231 ~~~vLDIGcG--~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~--~Da~~~~~~~~~~~~~~~d~  306 (420)
                      +..||=.|+|  .|..++.+|+.. +.++++++.|++..+.+++    .|...+ +-.  .|..+-+.+.-  ....+|.
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~----lGa~~v-i~~~~~d~~~~v~~~t--~g~g~d~  100 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAWQV-INYREEDLVERLKEIT--GGKKVRV  100 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCSEE-EETTTSCHHHHHHHHT--TTCCEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh----cCCeEE-EECCCCCHHHHHHHHh--CCCCeEE
Confidence            5667777555  677888899875 6899999999998877754    454322 211  22222222211  3456787


Q ss_pred             EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014711          307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  347 (420)
Q Consensus       307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~  347 (420)
                      ++-. ..+              +.+......|+++|++++.
T Consensus       101 v~d~-~g~--------------~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2         101 VYDS-VGR--------------DTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             EEEC-SCG--------------GGHHHHHHTEEEEEEEEEC
T ss_pred             EEeC-ccH--------------HHHHHHHHHHhcCCeeeec
Confidence            6543 222              4567788999999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=81.46  E-value=5.4  Score=32.57  Aligned_cols=98  Identities=14%  Similarity=0.077  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014711          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  308 (420)
Q Consensus       230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~  308 (420)
                      .+..|+=||+|. |..++..|+.. ..+|+.+|.+++.++..+....    .++.....+-..+ .+.+.    ..|.|+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~l-~~~~~----~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG----SRVELLYSNSAEI-ETAVA----EADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHH-HHHHH----TCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhhH-HHhhc----cCcEEE
Confidence            367899999997 66677777776 6899999999999877665432    3566777766655 33332    357775


Q ss_pred             EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014711          309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  345 (420)
Q Consensus       309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~  345 (420)
                      -.--  +|-++.+  .++.+    ++.+.+|||..++
T Consensus       101 ~aal--ipG~~aP--~lIt~----~mv~~Mk~GSVIV  129 (168)
T d1pjca1         101 GAVL--VPGRRAP--ILVPA----SLVEQMRTGSVIV  129 (168)
T ss_dssp             ECCC--CTTSSCC--CCBCH----HHHTTSCTTCEEE
T ss_pred             Eeee--cCCcccC--eeecH----HHHhhcCCCcEEE
Confidence            4322  2222222  24443    4456899999886

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=81.05  E-value=3.3  Score=33.16  Aligned_cols=109  Identities=11%  Similarity=0.037  Sum_probs=65.3

Q ss_pred             EEEEEcCCc-cH-HHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014711          233 LVVDIGSGN-GL-FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  310 (420)
Q Consensus       233 ~vLDIGcG~-G~-~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~  310 (420)
                      +|.=||||. |. .-+...+..|+..++.+|.+++..+...++   .+...   ...|..+++       +..+|.|++.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~---~~~~~~~ll-------~~~iD~V~I~   69 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR---YRVSA---TCTDYRDVL-------QYGVDAVMIH   69 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH---TTCCC---CCSSTTGGG-------GGCCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh---ccccc---ccccHHHhc-------ccccceeccc
Confidence            456689985 32 234455668888999999998776655443   34322   235655553       2358999886


Q ss_pred             CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE---eCcHHHHHHHHHHHHHcCCce
Q 014711          311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMKQQFLEYGKGK  368 (420)
Q Consensus       311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~---td~~~~~~~~~~~l~~~g~~~  368 (420)
                      -|+..              -...+..+|+.|=-++++   +.+..-.+.+.+..++++...
T Consensus        70 tp~~~--------------H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          70 AATDV--------------HSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             SCGGG--------------HHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ccccc--------------cccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            33321              223344566666556665   234455667888888887553