Citrus Sinensis ID: 014730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQRELQWFKV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHccccEEEEcccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHcccccHHHHcccccHHHHHHHHHHcHHHHHHHHHHHcHHHHHHcccccccHHHHHHccccccccccccHHHHHHHHHccccHHHcccccccccccccccccccccccccccHHHHHcccccccccHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccHHHHHHHHHcHHHHHHHHHHHccHHHEEcccccccHEHHHHHccHHHHHHHHHHcccHHHHEEEEccccccEHHHHccccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
miekndwpgvedfvtnhpdaltakivepgsktIFHTIAELlvdddsdeATCLLDklatkvdpqtlarqdnhghTAVIFCAAKGNLKALKVLLKynpdltnirdsdgylpvhnaayyghkDTFQYLLEAtngvdiyrgndGAMVLLFLIAANLYDVALDLLklhptigrdnidSRRIVLNTLsqkpyafasgsrlGRLRRLIYNCwcqqsciplekervpsiqsnddqnvdgdtenftvtskmhpkestpfgstQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYdscsnwsnqdghtifdHAVLHRREKVFNLIQGVNFTTFLfssrdksgnnilhlagrlvpssevAGAALQMQRELQWFKV
Flexible Loop (DISEMBL)
miekndwpgveDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHptigrdnidsRRIVLntlsqkpyafasgsrlgRLRRLIYNCWCQQSCIplekervpsiqsnddqnvdgDTENFTVTskmhpkestpfgsTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQRELQWFKV
Low Complexity Region (SEG)
MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFAsgsrlgrlrrlIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQRELQWFKV
Disordered region (IsUnstruct)
*********VEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPL****************************************QQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVP********************
Disordered Region (DISOPRED)
MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQRELQWFKV
Disordered Region (DISEMBL)
MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKM********GSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQRELQWFKV
Disordered Region (DISPRO)
**EKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQRELQWFKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQRELQWFKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	419	2.2.26 [Sep-21-2011]
Q0JKV1	935	Potassium channel AKT1 OS	yes	no	0.188	0.084	0.376	5e-06
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.188	0.084	0.376	5e-06
Q9BZL4	782	Protein phosphatase 1 reg	yes	no	0.155	0.083	0.385	9e-06
Q3UMT1	782	Protein phosphatase 1 reg	yes	no	0.159	0.085	0.382	1e-05
Q9ULJ7	1429	Ankyrin repeat domain-con	no	no	0.229	0.067	0.321	2e-05
Q9SQK3	315	Ankyrin repeat domain-con	no	no	0.224	0.298	0.349	4e-05
Q8BG95	976	Protein phosphatase 1 reg	no	no	0.159	0.068	0.397	7e-05
O60237	982	Protein phosphatase 1 reg	no	no	0.159	0.068	0.397	8e-05
Q5U312	978	Ankycorbin OS=Rattus norv	no	no	0.178	0.076	0.341	0.0001
Q38998	857	Potassium channel AKT1 OS	no	no	0.176	0.086	0.346	0.0002

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 56  LATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAY 115
           L   +DP      DN GHTA+   A+KGN + +++LL+Y  D  N RDS+G +P+  A  
Sbjct: 586 LKRGMDPN---ESDNDGHTALHIAASKGNEQCVRLLLEYGAD-PNARDSEGKVPLWEALC 641

Query: 116 YGHKDTFQYLLEATNGVDIYRGNDG 140
             H    Q L+E   G D+  G+ G
Sbjct: 642 EKHAAVVQLLVEG--GADLSSGDTG 664

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 56  LATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAY 115
           L   +DP      DN GHTA+   A+KGN + +++LL+Y  D  N RDS+G +P+  A  
Sbjct: 586 LKRGMDPN---ESDNDGHTALHIAASKGNEQCVRLLLEYGAD-PNARDSEGKVPLWEALC 641

Query: 116 YGHKDTFQYLLEATNGVDIYRGNDG 140
             H    Q L+E   G D+  G+ G
Sbjct: 642 EKHAAVVQLLVEG--GADLSSGDTG 664

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9BZL4|PP12C_HUMAN Protein phosphatase 1 regulatory subunit 12C OS=Homo sapiens GN=PPP1R12C PE=1 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLK--YNPDLTNIRDSDGYLPVHNAAYYGHKDTFQ 123
           AR    G +A+   AAKG ++ +++LL+  Y+P+L   RD DG+ P+H AA++G +D  +
Sbjct: 221 ARHPRTGASALHVAAAKGYIEVMRLLLQAGYDPEL---RDGDGWTPLHAAAHWGVEDACR 277

Query: 124 YLLEATNGVD 133
            L E   G+D
Sbjct: 278 LLAEHGGGMD 287

Regulates myosin phosphatase activity.

Homo sapiens (taxid: 9606)

>sp|Q3UMT1|PP12C_MOUSE Protein phosphatase 1 regulatory subunit 12C OS=Mus musculus GN=Ppp1r12c PE=1 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           AR    G +A+   AAKG ++ +++LL+   D T +RD DG+ P+H AA++G +D  + L
Sbjct: 225 ARHPRTGASALHVAAAKGYIEVMRLLLQAGYD-TELRDGDGWTPLHAAAHWGVEDACRLL 283

Query: 126 LEATNGVD 133
            E   G+D
Sbjct: 284 AEHGGGMD 291

Regulates myosin phosphatase activity.

Mus musculus (taxid: 10090)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 13/109 (11%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           D+ G T +   +A+GN++ ++ LL    D  N RD  G+ P+H AA+ GH+   + L+E 
Sbjct: 811 DSEGRTVLSIASAQGNVEVVRTLLDRGLD-ENHRDDAGWTPLHMAAFEGHRLICEALIEQ 869

Query: 129 ---TNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSR 174
              TN +D    NDG +  +       YD    LL+      + NID R
Sbjct: 870 GARTNEID----NDGRIPFILASQEGHYDCVQILLE-----NKSNIDQR 909

Homo sapiens (taxid: 9606)

>sp|Q9SQK3|EM506_ARATH Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana GN=EMB506 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           QD  G   + +    G L+ +K+L KYN D+ N+ D++G+ P+H A    ++D  + LL 
Sbjct: 214 QDRDGAAPIHYAVQVGALQTVKLLFKYNVDV-NVADNEGWTPLHIAVQSRNRDITKILL- 271

Query: 128 ATNGVD-IYRGNDGA----MVLLFLIAANLYDVALDLLKLHPT 165
            TNG D   R  DG     + L F      YD+ + LLK+ PT
Sbjct: 272 -TNGADKTRRTKDGKLALDLALCFGRDFKSYDL-VKLLKIMPT 312

Involved in the initial differentiation of the proplastid during the embryo development. Also required for correct cotyledon, true leaf and cauline leaf margin development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8BG95|MYPT2_MOUSE Protein phosphatase 1 regulatory subunit 12B OS=Mus musculus GN=Ppp1r12b PE=1 SV=2

 Score = 48.9 bits (115), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
           RQ   G TA+   AAKG  + L++L++   +L N++D DG+ P+H AA++G K+    L 
Sbjct: 212 RQARSGATALHVAAAKGYSEVLRLLIQAGYEL-NVQDHDGWTPLHAAAHWGVKEACSILA 270

Query: 127 EATNGVDI 134
           EA   +DI
Sbjct: 271 EALCDMDI 278

Regulates myosin phosphatase activity. Augments Ca(2+) sensitivity of the contractile apparatus.

Mus musculus (taxid: 10090)

>sp|O60237|MYPT2_HUMAN Protein phosphatase 1 regulatory subunit 12B OS=Homo sapiens GN=PPP1R12B PE=1 SV=2

 Score = 48.9 bits (115), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
           RQ   G TA+   AAKG  + L++L++   +L N++D DG+ P+H AA++G K+    L 
Sbjct: 212 RQARSGATALHVAAAKGYSEVLRLLIQAGYEL-NVQDYDGWTPLHAAAHWGVKEACSILA 270

Query: 127 EATNGVDI 134
           EA   +DI
Sbjct: 271 EALCDMDI 278

Regulates myosin phosphatase activity. Augments Ca(2+) sensitivity of the contractile apparatus.

Homo sapiens (taxid: 9606)

>sp|Q5U312|RAI14_RAT Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 4/79 (5%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           DN G TA+ + AA+G+L+A++VL ++   + N++D DG +P+  A   GH +   +LL+ 
Sbjct: 116 DNLGKTALHYAAAQGSLQAVQVLCEHKSPI-NLKDLDGNIPLLVAIQNGHSEACHFLLD- 173

Query: 129 TNGVDI-YRGNDGAMVLLF 146
            +G D+  R  +G   L+ 
Sbjct: 174 -HGADVNSRDKNGRTALML 191

Rattus norvegicus (taxid: 10116)

>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 56  LATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAY 115
           L   +DP      DN+G T +   A+KG L  + +LL+Y+ D  N RD++G +P+  A  
Sbjct: 538 LKRGLDPN---ESDNNGRTPLHIAASKGTLNCVLLLLEYHAD-PNCRDAEGSVPLWEAMV 593

Query: 116 YGHKDTFQYLLEATNGVD 133
            GH+   + LLE  + +D
Sbjct: 594 EGHEKVVKVLLEHGSTID 611

Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
255544802	590	ankyrin repeat-containing protein, putat	0.868	0.616	0.315	2e-39
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.875	0.216	0.297	1e-36
225464352	603	PREDICTED: uncharacterized protein LOC10	0.823	0.572	0.295	2e-36
9293890	653	unnamed protein product [Arabidopsis tha	0.899	0.577	0.290	4e-36
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.799	0.424	0.306	1e-35
296087936	750	unnamed protein product [Vitis vinifera]	0.875	0.489	0.293	4e-35
296087932	655	unnamed protein product [Vitis vinifera]	0.899	0.575	0.308	4e-35
296088578	718	unnamed protein product [Vitis vinifera]	0.887	0.518	0.304	1e-34
359494194	626	PREDICTED: uncharacterized protein LOC10	0.852	0.570	0.296	3e-34
255552378	580	ankyrin repeat-containing protein, putat	0.852	0.615	0.294	7e-34

>gi|255544802|ref|XP_002513462.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223547370|gb|EEF48865.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/418 (31%), Positives = 194/418 (46%), Gaps = 54/418 (12%)

Query: 5   NDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQT 64
             W   +      P ALTAKI      + F  IA L V   +  +   +  +   +    
Sbjct: 19  GQWITAKRIFDEDPSALTAKI------SGFEEIA-LYVAITAGHSIEFVQNIVNLMSEDL 71

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
           +   +  G+ A+   A  GNL+A K+L+K NP LT  R+     P+H AA Y H++T ++
Sbjct: 72  IGTVNRDGNNALHAAAMVGNLEAAKILVKKNPTLTQGRNVLNATPLHYAASYAHQETVRF 131

Query: 125 LLEATNG--VDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLS 182
           LL  T       +   DG  +L  LI A+ Y +AL LLK +P + R         L+ L+
Sbjct: 132 LLPVTRDEYPSPFTDKDGVRLLNSLITADFYGLALHLLKRYPALARGTDQYGFTSLDMLA 191

Query: 183 QKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKM 242
           +KP AF SGSRLG     +Y+ +C  + +  E             +  GD EN    S+ 
Sbjct: 192 RKPQAFPSGSRLGFRHSFLYH-YCAANSVDTETF-----------HQGGDVENQVGGSEK 239

Query: 243 HPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVR-I 301
           + ++   F                               ++ I    L H + VE++R +
Sbjct: 240 YCQKRFSF-------------------------------LRDIDKTLLMHKQAVELLRNL 268

Query: 302 ICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLH 361
           I E +     Q  + L  +  +A   GI E V E I +Y     + + DG TIF  A+ H
Sbjct: 269 ISEALKANESQLHSLLGSSTQTATKFGIQEFVAEAIKSYPYSVWFRDGDGCTIFHLAIKH 328

Query: 362 RREKVFNLIQGV-NFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQRELQWFK 418
           R+EK+FNL+  + N    + S  D  GN +LHLAG L PSS+++GAALQMQRELQWFK
Sbjct: 329 RQEKIFNLLYQIGNHKHIITSLADSLGNTMLHLAGTLQPSSKISGAALQMQRELQWFK 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 203/423 (47%), Gaps = 56/423 (13%)

Query: 6   DWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTL 65
           DW   + F+ ++P A+ A+I    S+T  H  A           T  +++L   + P  L
Sbjct: 186 DWKSAKAFLESNPQAVRARITRR-SETALHIAA-------GARHTRFVEELVKLMKPDDL 237

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           A Q+  G+TA+ F AA G  +  +V++  N +L  IR S G  P++ AA  GHKD  +YL
Sbjct: 238 ALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYL 297

Query: 126 LEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP 185
              T   ++ +  D   +L+  I ANL+DVAL +L   P +      +    L+ L++KP
Sbjct: 298 YSVTEEDNLTK-EDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGDTALHVLARKP 356

Query: 186 YAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPK 245
            AF SG    R   L+Y+    +  + L              NV                
Sbjct: 357 LAFYSGRARQRGVFLLYSATKGEVRLCL--------------NV---------------- 386

Query: 246 ESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLA-PSIKVIHDQKLTHMRTVEIVRIICE 304
                   + + +    +F+  N   +  L+  A P  K ++D+KL H++ +E+V+ + +
Sbjct: 387 -------IRSLCSASTHVFYXFNSQTYFGLLPHAVPGFKSVYDKKLMHIQALELVQQLWD 439

Query: 305 GVVWTNFQ-KSAQL----SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAV 359
            ++  +   K  +L    S  + +AA LGI E +   I +Y       N    TIF  AV
Sbjct: 440 KILSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAV 499

Query: 360 LHRREKVFNLIQGVN-FTTFLFSSRDKSGNNILHLAGRLVPSSEV---AGAALQMQRELQ 415
            HR+EK+FNLI  +     ++ + +D+  NN+LHLAG+L PS+ +   +GAA Q+QREL 
Sbjct: 500 AHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELH 559

Query: 416 WFK 418
           WFK
Sbjct: 560 WFK 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464352|ref|XP_002263244.1| PREDICTED: uncharacterized protein LOC100265216 [Vitis vinifera]

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 190/426 (44%), Gaps = 81/426 (19%)

Query: 5   NDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQT 64
            DW      + + P + +A I    S+ + H   EL      +     ++KL   +  + 
Sbjct: 43  GDWESAPKLLKDDPRSFSAPIGTDDSR-MLHIAVEL-----GEARMGFVEKLVEFMPSEA 96

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
           LA +D+ G TA+   A  GN+KA+K+L+  NP L NI   D + P+H+A  YGHK+   Y
Sbjct: 97  LALRDSDGATALFNAARAGNIKAVKLLVNKNPSLPNICQRDNFAPLHSAVRYGHKELTLY 156

Query: 125 LLEATNGVDI---YRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIV---- 177
           LL  T   +    +  + G  +L   +    +DVAL L++ +P +   N    +      
Sbjct: 157 LLSVTRDDEPPYPFSNSPGFELLRRALMVGFHDVALHLVERYPDLATCNFGDAKDSDDDK 216

Query: 178 --LNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTEN 235
             L  L+++P+AF SGSR        +N W  Q  I                        
Sbjct: 217 APLTVLAKRPWAFRSGSR--------FNLW--QLII------------------------ 242

Query: 236 FTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRT 295
                         + S Q+  AIF           W  +  L P IK I + K  H  T
Sbjct: 243 --------------YHSCQKANAIF-----------WELIGWLVPPIKHIQETKTMHTLT 277

Query: 296 VEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIF 355
           ++++  +C  V+  +  K      + ++ A  GIPE++ E I +Y     + ++D   +F
Sbjct: 278 LQLLNHLCTEVLKVSRAKKI-FRQSFINGAKYGIPEILEEIIKSYPYALEYLDED---VF 333

Query: 356 DHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPS---SEVAGAALQMQR 412
             AVL+R EK+FNLI        L    +   NNILHLAG+L P    S V+GAALQMQR
Sbjct: 334 KLAVLNRYEKIFNLICETGMHRQLIIRTEDDSNNILHLAGKLAPPHRLSLVSGAALQMQR 393

Query: 413 ELQWFK 418
           EL WFK
Sbjct: 394 ELHWFK 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9293890|dbj|BAB01793.1| unnamed protein product [Arabidopsis thaliana]

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 207/433 (47%), Gaps = 56/433 (12%)

Query: 2   IEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKV- 60
           I+  +    +DF+  +P+ALTA +   G   I   +    +         +++++  ++ 
Sbjct: 57  IDSGELEATKDFLDRNPEALTAILTSNGDTPIHKAVLSGHIK--------IVEEIIRRIH 108

Query: 61  DP-QTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHK 119
           DP Q L  ++++G+TA+ + A  G ++  + L+   P L ++R++  ++P+  A+ YGHK
Sbjct: 109 DPEQVLKIKNDNGYTALTYAATGGIVRIAECLVNKCPGLVSVRNAKEHIPIVVASLYGHK 168

Query: 120 DTFQYL--------LEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNI 171
              QYL        L+  +  D ++G +GAM++   I   LY +ALDL++ +P +     
Sbjct: 169 HLVQYLYSHTPLSDLDPCDDSDEHKGKNGAMLVTNCIVDGLYCIALDLIQRYPKLAYTRD 228

Query: 172 DSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDG 231
                 +  L+Q PYAF SG+RL   +R IY      SCI +EK             ++ 
Sbjct: 229 SDNDTAIMALAQTPYAFPSGTRLAFWQRWIY------SCIHIEK-------------INN 269

Query: 232 DTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLT 291
             E          + S    S Q+          KL + L     R+   I+ ++  KL 
Sbjct: 270 PHEVNNHHHHHQYRNSQDHNSIQE----------KLMKHLKYLFPRI---IRRVYKLKLG 316

Query: 292 HMRTVEIVRIICEGVVWTNF--QKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQ 349
           H +  EI+  IC+ +   +   QK+A L+ A+  A   GI E + E +  Y       N 
Sbjct: 317 HAQAKEILDCICQEIPKFDAAQQKNAGLNQALFKAVENGIVEYIEEMMRHYPDIVWSKNS 376

Query: 350 DGHTIFDHAVLHRREKVFNLIQGVNF-TTFLFSSRDKSGNNILHLAGRLVPSSE---VAG 405
            G  IF +AV  R+EK+F+LI  +      L ++ D   NN+LH A    P+S    + G
Sbjct: 377 SGLNIFFYAVSQRQEKIFSLIYNIGAKKNILATNWDIFHNNMLHHAAYRAPASRLNLIPG 436

Query: 406 AALQMQRELQWFK 418
           AALQMQRELQWFK
Sbjct: 437 AALQMQRELQWFK 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 194/418 (46%), Gaps = 83/418 (19%)

Query: 5   NDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQT 64
            DW   + F+ ++P A+ A+I    S+T  H  A           T  +++L   + P  
Sbjct: 185 GDWKSAKAFLESNPQAVRARITR-RSETALHIAA-------GARHTRFVEELVKLMKPDD 236

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
           LA Q+  G+TA+ F AA G  +  +V++  N +L  IR S G  P++ AA  GHKD  +Y
Sbjct: 237 LALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRY 296

Query: 125 LLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQK 184
           L   T   ++ +  D   +L+  I ANL+DVAL +L   P +      +    L+ L++K
Sbjct: 297 LYSVTEEDNLTK-EDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGDTALHVLARK 355

Query: 185 PYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHP 244
           P AF SGS+LG   R IY+               P  +S  D+ +            MH 
Sbjct: 356 PLAFYSGSQLGIWHRCIYS--------------FPGFKSVYDKKL------------MH- 388

Query: 245 KESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICE 304
                      I A+      +L + LW+ ++ L       HD K+      E++R    
Sbjct: 389 -----------IQAL------ELVQQLWDKILSLD------HDPKIG-----ELIR---- 416

Query: 305 GVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRRE 364
                        S  + +AA LGI E +   I +Y       N    TIF  AV HR+E
Sbjct: 417 -----------TPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQE 465

Query: 365 KVFNLIQGVN-FTTFLFSSRDKSGNNILHLAGRLVPSSEV---AGAALQMQRELQWFK 418
           K+FNLI  +     ++ + +D+  NN+LHLAG+L PS+ +   +GAA Q+QREL WFK
Sbjct: 466 KIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFK 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087936|emb|CBI35219.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 128/436 (29%), Positives = 197/436 (45%), Gaps = 69/436 (15%)

Query: 2   IEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVD 61
           + +  W  +E F   +P  ++AKI  P  +T  H                ++++L  K+ 
Sbjct: 162 LNRGRWNDIESFFNKNPGTVSAKI-SPKGETALHIAVR-------AGHVKVVEELVKKLS 213

Query: 62  PQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDT 121
           P+ L +++N G T +   A  G  +  + ++K N +LT+I D +G LPV  A   G K+ 
Sbjct: 214 PKDLKQENNEGRTPLALAALNGFKEIAQCMIKKNTELTSILDKEGILPVVRACNRGKKEV 273

Query: 122 ----FQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHP----TIGRDNIDS 173
               + Y      G     G +GA +L++ IA    D+AL +L+ HP    T  +D +  
Sbjct: 274 TRLLYNYTPPKEQGPKKGEGKNGATLLVYCIATKFLDIALHILEKHPSLAVTFNKDGVSP 333

Query: 174 RRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDT 233
               L  L QKP  F SGS+L   +R IY+C                I  N D   D   
Sbjct: 334 ----LYVLGQKPSLFKSGSQLWFWQRWIYSC----------------ISVNVDCASDWIQ 373

Query: 234 ENFT--VTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLT 291
            N    +      + +T  G +      F ++F+                   IHDQKL 
Sbjct: 374 INVVDDIAQGRDDRNNTKKGMSLLQIDNFKVVFN-------------------IHDQKLR 414

Query: 292 HMRTVEIVRIICEGVVWTNFQKSA---QLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSN 348
           H + ++I+  IC  +   N +      Q+  A+  A   G  E V E I +    + WS+
Sbjct: 415 HAQAIKILGSIC--IELQNMKVDVLGFQVHQAVFQAVKRGNVEFVTEMIKSIPELA-WSH 471

Query: 349 Q-DGHTIFDHAVLHRREKVFNLIQGVNFTTFL--FSSRDKSGNNILHLAGRLVPSSE--- 402
             +G  IF  A+L+R+EK+FNL+ G+     +   S  D+  NN+LHL   L PS +   
Sbjct: 472 DINGRNIFFIAILNRQEKIFNLLHGLTHAQKMKVISPLDRFRNNMLHLVAMLAPSEQLDG 531

Query: 403 VAGAALQMQRELQWFK 418
           ++GAALQMQRELQWFK
Sbjct: 532 ISGAALQMQRELQWFK 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087932|emb|CBI35215.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 210/431 (48%), Gaps = 54/431 (12%)

Query: 2   IEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVD 61
           ++  +W  +ED + ++PD + AKI  P   T  H IA L           +++KL  K+ 
Sbjct: 62  LDGGNWNAIEDSLRSNPDLVRAKIT-PTGLTPLH-IAAL------AGHVRVVEKLVDKLK 113

Query: 62  PQTLA-RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKD 120
           P+ L  ++D  G+T +   A+ G  +  + +L  N  L  I D D  LPV  A   G K+
Sbjct: 114 PEDLGQKEDLLGYTPLALAASDGITEIAQCMLTKNRTLAGISDGDEMLPVVIACNRGKKE 173

Query: 121 TFQYLLEATNGVDIY--RGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIV- 177
             ++L   T    +   +G +GA +L   IA+ + DVALD+LK HP +   ++D  RI+ 
Sbjct: 174 MTRFLYSHTPQEKLAPGQGKNGASLLSNCIASQILDVALDILKKHPRLAI-SLDMERIIP 232

Query: 178 LNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVP-SIQSN--DDQNVDGDTE 234
           +  L Q P  F SGS+L   +R IY      SCIP++ +     IQ N  DD     D +
Sbjct: 233 IFVLGQMPSLFKSGSQLWFWQRWIY------SCIPVKVDHASDQIQVNVADDTQHSRDVK 286

Query: 235 NFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMR 294
           N T     H      +G    +  + G                    IK I+ +KL H +
Sbjct: 287 NNTAKVLRH-----LYGPVSYLLQLLG--------------------IKNIYAKKLRHAQ 321

Query: 295 TVEIVRIICEGVVWTNFQKS--AQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGH 352
             E+++ IC  +   N + +   +L   ++ A   G  +   E I         ++ +  
Sbjct: 322 ATELLQCICNEIQKVNVEGTLGLRLHHTVIQAVKQGNVDFATEMIKYTPQLVQKTDINDR 381

Query: 353 TIFDHAVLHRREKVFNLIQGVNFT--TFLFSSRDKSGNNILHLAGRLVPSSE---VAGAA 407
            IF  A+L+R+EK+F+L+ G+N      + S+ D+ GNN+LHLA  L P+++   ++GAA
Sbjct: 382 NIFFIAILNRQEKIFSLLHGLNNVKKMKMTSNVDRFGNNMLHLAAMLAPANQLDGISGAA 441

Query: 408 LQMQRELQWFK 418
           LQMQRELQWFK
Sbjct: 442 LQMQRELQWFK 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088578|emb|CBI37569.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 131/430 (30%), Positives = 209/430 (48%), Gaps = 58/430 (13%)

Query: 2   IEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVD 61
           ++  DW   + F+ + PDA+ A I  P ++T  H    +L          ++ +L   + 
Sbjct: 131 VDDGDWVTTKAFLDHDPDAVRASI-SPTNETALHV--AILAGHAH-----IVKELVKLMT 182

Query: 62  PQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDT 121
           P+ L  +   G TA+   A  G  K  K +++  P    + +  G +PV  A++Y  KD 
Sbjct: 183 PKDLELRSGLGETALTTAAISGVTKMAKAIVEQYPSAVCVGNEHGQIPVIVASFYDQKDM 242

Query: 122 FQYLLEAT--NGVDIYRGNDGAMVLLFLIAANLYDVALDLLK--LHPTIGRDNIDSRRIV 177
            +YL   T    +   +G +GA +L FL++AN+YD+AL LLK   H +  +D   +  + 
Sbjct: 243 VRYLYSVTPIEELSPEKGTNGATLLNFLVSANIYDIALHLLKHYRHLSFTKDYYGNYTV- 301

Query: 178 LNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFT 237
              L++KP AF SGS+L    R IY+C          K  + +    +   +     + T
Sbjct: 302 -RMLARKPSAFLSGSKLLFWERWIYSC----------KYFIVNHHLLEKVYLHYLANHLT 350

Query: 238 VTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVE 297
             S        P   ++Q+     L+F               P +K I++ K TH+ + +
Sbjct: 351 CPSNYMDTYGPP--KSKQV-----LVF---------------PDLKHIYEAKWTHVGSSQ 388

Query: 298 IVRIICEGVVWTNFQKSAQLSGAMLSAAIL-GIPEVVNEFIMA---YDSCSNW-SNQDGH 352
           ++  I E +    +  S+QL    ++ AI   I   + EFI+A   +D  S W     G 
Sbjct: 389 LLDCIFEEI---PYLTSSQLEMFGINQAIYDAIKHGIIEFIVALIKHDPESIWRKGVKGR 445

Query: 353 TIFDHAVLHRREKVFNLIQGVNFTTFLFSSR-DKSGNNILHLAGRLVPSSE---VAGAAL 408
           T+F HAV+ R+EK+F+L+ G+     + + R D   NNILHLAG+L P S+   V+GAAL
Sbjct: 446 TMFSHAVVLRQEKIFSLVYGLGIKKNVIARRHDIFHNNILHLAGKLSPPSQLDRVSGAAL 505

Query: 409 QMQRELQWFK 418
           QMQRELQWFK
Sbjct: 506 QMQRELQWFK 515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494194|ref|XP_002266127.2| PREDICTED: uncharacterized protein LOC100258383 [Vitis vinifera]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 199/428 (46%), Gaps = 71/428 (16%)

Query: 6   DWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLAT---KVDP 62
           DW      + ++P  L+A+     S  I H   EL      +     ++KL     + DP
Sbjct: 51  DWERASQLLVHNPQLLSARFGTDDSG-ILHIAVEL-----GEARMGFVEKLVEFMLREDP 104

Query: 63  -QTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDT 121
            +TLA +D+   TA+   A  GN+KA+K L+K N +L NI +   + P+H A  YGHK+ 
Sbjct: 105 SETLALRDSDDATALFNAARAGNIKAVKFLVKKNQNLPNICNRQHFAPLHTAVKYGHKEL 164

Query: 122 FQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRR----IV 177
             YLL  T   D++ G+ G  +L   +    +DVAL L++ +  +   + DS        
Sbjct: 165 TLYLLSVTRD-DVWSGSSGIELLGRALMVGFHDVALRLVERYSDLATCHFDSAPHEDFAP 223

Query: 178 LNTLSQKPYAFASGSRLGRLRRLIYN-CWCQQSCIPLEKERVPSIQSNDDQNVDGDTENF 236
           L  L+++P+AF SGS     + +IY+      +C                        NF
Sbjct: 224 LTVLAKRPWAFRSGSCFNLCQLMIYHFLLLHLTCF-----------------------NF 260

Query: 237 TVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPS-IKVIHDQKLTHMRT 295
           T+ +                         K N + W  +  L P  IK I + K  H  T
Sbjct: 261 TLHTACR----------------------KANAIFWEPVGWLVPPPIKHIQETKTMHTLT 298

Query: 296 VEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIF 355
           ++++  +C  V+  +  K      + ++ A  GIPE++ E I +Y     + ++D   +F
Sbjct: 299 LQLLNHLCTEVLKVSRAKEI-FRQSFINGAKYGIPEILEEIIKSYPFALEYLDED---VF 354

Query: 356 DHAVLHRREKVFNLI--QGVNFTTFLFSSRDKSGNNILHLAGRLVPS---SEVAGAALQM 410
              VL+R EK+FNLI   G++    + +  D + +NILHLAG+L P    S V+GAALQM
Sbjct: 355 KLVVLNRYEKIFNLICETGMHRQLIIRTRDDTNNDNILHLAGKLAPPHRLSLVSGAALQM 414

Query: 411 QRELQWFK 418
           QREL WFK
Sbjct: 415 QRELHWFK 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552378|ref|XP_002517233.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543604|gb|EEF45133.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 198/428 (46%), Gaps = 71/428 (16%)

Query: 2   IEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVD 61
           ++  DW   + F+ +HPDALTA +   G   +   +    V+        ++++L T +D
Sbjct: 10  VDSGDWEAAKKFLEDHPDALTASLSADGDTALHVAVLAGHVE--------IVEELLTLLD 61

Query: 62  PQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDT 121
            + L  ++ +  TA+ + A  G  +  + L+    +L +I + +G +PV  A+ YGHKD 
Sbjct: 62  AEDLEMKNKNNATALNYAAIGGITRIAEGLVNSRKNLLSIPNQNGLIPVVVASLYGHKDM 121

Query: 122 FQYLL-EATNG-VDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLN 179
            +YL  E+  G +   +G +G M+L   I  +LYD+ALDLL+ +P +       +   L 
Sbjct: 122 ARYLYKESPKGELSPEKGKNGIMLLTTCIVDDLYDIALDLLQNYPELAYHQDSDKDTALE 181

Query: 180 TLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPL-EKERVPSIQSNDDQNVDGDTENFTV 238
            L+QKP AF SGS L                 PL +  RVP  Q +     +GD E+   
Sbjct: 182 MLAQKPSAFPSGSTL-----------------PLWQSIRVPESQPSS----NGDIES--- 217

Query: 239 TSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEI 298
                P+                                  P ++ +++ KLTH++  E+
Sbjct: 218 -----PRSGRLIRRNIIRR---------------------VPGLEYLYNLKLTHVQAHEL 251

Query: 299 VRIICEGVVWTNFQKSA----QLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTI 354
           +  +C+ +  +   KS      +  A+  A   G  E V E    Y       ++    I
Sbjct: 252 LCCLCQEI--STLHKSEFENIGVYRAIFKAVKHGTVEFVEEMTKHYPDIIWCEDECNRGI 309

Query: 355 FDHAVLHRREKVFNLIQGVNF-TTFLFSSRDKSGNNILHLAGRLVPSSE---VAGAALQM 410
           F +AVL R+EKVFNLI  +      + +S DK  NNILH A    PSS+   V+GAALQM
Sbjct: 310 FMYAVLQRQEKVFNLIYKMGAKKNSIATSWDKYFNNILHQAASPPPSSQLDRVSGAALQM 369

Query: 411 QRELQWFK 418
           QRELQW+K
Sbjct: 370 QRELQWYK 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.357	0.224	0.339	4.9e-18
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.322	0.216	0.352	6.3e-18
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.241	0.175	0.330	6.2e-16
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.324	0.225	0.367	2.7e-15
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.331	0.492	0.289	1.1e-06
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.298	0.360	0.333	2.4e-06
POMBASE|SPBP16F5.05c	146	SPBP16F5.05c "ribosome biogene	0.181	0.520	0.320	4.7e-06
UNIPROTKB|A7MBB9	168	CDKN2C "CDKN2C protein" [Bos t	0.143	0.357	0.412	6e-06
ZFIN|ZDB-GENE-050417-46	218	ankrd49 "ankyrin repeat domain	0.298	0.573	0.314	1.4e-05
TAIR|locus:2173767	315	EMB506 "embryo defective 506"	0.224	0.298	0.359	3.4e-05

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
 Identities = 54/159 (33%), Positives = 84/159 (52%)

Query:   267 LNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNF-QKSAQLSGAMLSAA 325
             L R L   L +    I  ++  K+ H++  +++  I E  +     ++S  +  A+L A 
Sbjct:   309 LMRKLLKGLSKWT-GIDEVYRLKVMHLQAKKLLLGISEETLALGLKERSETVDEALLFAV 367

Query:   326 ILGIPEVVNEFIMAYDSCSNWSNQ--DGHTIFDHAVLHRREKVFNLIQGVNFTTFLF-SS 382
               G  + + E I   +S   WS +     T+F  AV  R+EKVF+L+ G++   +L  + 
Sbjct:   368 RYGNVDFLVEMIRN-NSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYLLLAD 426

Query:   383 RDKSGNNILHLAGRLVPSSE---VAGAALQMQRELQWFK 418
             +D  GN +LHLAG   P S+   V GA LQ+QRELQWFK
Sbjct:   427 KDCDGNGVLHLAGFPSPPSKLSSVVGAPLQLQRELQWFK 465

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
 Identities = 50/142 (35%), Positives = 81/142 (57%)

Query:   282 IKVIHDQKLTHMRTVEIVRIICEGVVWTNF-QKSAQLSGAMLSAAILGIPEVVNEFIMAY 340
             I  ++  K+ H++  ++++ I E  +     ++S  +  A+L A   G  + + E I   
Sbjct:   284 IDEVYRLKVMHLQAKKLLKGISEETLALGLKERSESVDEALLFAVRYGNVDFLVEMIKN- 342

Query:   341 DSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLF-SSRDKSGNNILHLAGRLVP 399
             +S   WS     T+F+ AV  R+EKVF+L+ G+    +LF + +D  GN++LHLAG   P
Sbjct:   343 NSELLWSTGTS-TLFNTAVQVRQEKVFSLLYGLGDRKYLFLADKDSDGNSVLHLAGYPPP 401

Query:   400 SSEVA---GAALQMQRELQWFK 418
             + ++A    A LQMQRELQWFK
Sbjct:   402 NYKLATVVSATLQMQRELQWFK 423

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
 Identities = 35/106 (33%), Positives = 60/106 (56%)

Query:    56 LATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAY 115
             L  ++DP  L+ ++  G+T + F AA G+++  ++L+    DL +I +     P+H AA 
Sbjct:   104 LLREMDPPDLSLKNKDGNTPLSFAAALGDIETAEMLINMIRDLPDISNEKTMTPIHIAAL 163

Query:   116 YGHKDTFQYLLEATNGVDIYRGNDGAMVLLF--LIAANLYDVALDL 159
             YGH +  QYL   T+  D+   ND   + LF  +I+A++Y V  D+
Sbjct:   164 YGHGEMVQYLFSKTSIKDL---NDQQYLNLFHTMISADIYGVFADV 206

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
 Identities = 54/147 (36%), Positives = 80/147 (54%)

Query:   282 IKVIHDQKLTHMRTVEIVRIICEG---VVWTN-FQKSAQLSGAMLSAAILGIPEVVNEFI 337
             IK  +D K  H +  ++++ +C     ++  N  +    +  A+L AA  G  +   E I
Sbjct:   255 IKQTYDLKKRHSQAQKLLKQMCTSLRDIMAKNEIRWKETVYEALLEAAKSGNRDFFIEII 314

Query:   338 MAYDSCSNW--SNQDGHTIFDHAVLHRREKVFNLIQGVNFTTF-LFSSRDKSGNNILHLA 394
                +S   W  +   G  +F  AV  ++EK+FNLI G++     L  S DK  NNILH+A
Sbjct:   315 KC-NSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRSYDKGNNNILHIA 373

Query:   395 GRL-VPS--SEVAGAALQMQRELQWFK 418
             GRL  P   S+++GAAL+MQRE QWFK
Sbjct:   374 GRLSTPDQLSKISGAALKMQRESQWFK 400

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 44/152 (28%), Positives = 71/152 (46%)

Query:     4 KNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQ 63
             K DW      +      +  KI    S+T+ H IA     +        +  L   ++  
Sbjct:    97 KGDWKAANGIIIEQKYIIYQKITSK-SETVLH-IAVAAKHEG------FVRNLLGSLESN 148

Query:    64 TLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQ 123
              LA ++  G+TA+ F AA G ++  K+L++ N DL  IR      P+H AA +GH +  +
Sbjct:   149 DLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIHMAALFGHGEMVK 208

Query:   124 YLLEATNGVDIYRGNDGAMVLLF--LIAANLY 153
             YL + T   +    ND   V LF  +I+A++Y
Sbjct:   209 YLYKNTRFREF---NDEEFVNLFHAVISADIY 237

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 46/138 (33%), Positives = 73/138 (52%)

Query:   293 MRTVE--IVRIICEGVVWTNFQKSAQLSGA--ML--SAAILGIPEVVNEFIMAYDSCSNW 346
             MRT+   +V  +   V+    ++ +Q  G+  ML   AA  G  E++   I +Y     W
Sbjct:     1 MRTLAHMVVEELWSFVIKLPVEEISQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLI-W 59

Query:   347 S-NQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSS-RDKSGN-NILHLAGRLVPSSE- 402
             + +    ++F  A ++R EK+FN I  +     L +  ++K  N N+LHL  RL P +  
Sbjct:    60 TVDHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPPNRL 119

Query:   403 --VAGAALQMQRELQWFK 418
               V+GAALQMQRE+ W+K
Sbjct:   120 QVVSGAALQMQREILWYK 137

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBP16F5.05c SPBP16F5.05c "ribosome biogenesis protein Nop8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 114 (45.2 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 25/78 (32%), Positives = 47/78 (60%)

Query:    52 LLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKY-NPDLTNIRDSDGYLPV 110
             LLD++  K  PQ L+R+D +G++ +   +A G++  ++ ++ Y N ++ N ++  G   +
Sbjct:    17 LLDEIIEKC-PQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVINAQNESGNTAM 75

Query:   111 HNAAYYGHKDTFQYLLEA 128
             H AA  GH +  + LLEA
Sbjct:    76 HWAALNGHAEICKLLLEA 93

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0030688 "preribosome, small subunit precursor" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|A7MBB9 CDKN2C "CDKN2C protein" [Bos taurus (taxid:9913)]

 Score = 98 (39.6 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query:    68 QDNHGHTAVIFCAAK-GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
             +D  G  AVI  AA+ G L  L+ LL++  D+ NI D++G LP+H AA  GH    ++L+
Sbjct:    66 KDRTGF-AVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLPVVEFLV 123

Query:   127 EAT 129
             + T
Sbjct:   124 KHT 126

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

ZFIN|ZDB-GENE-050417-46 ankrd49 "ankyrin repeat domain 49" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 44/140 (31%), Positives = 66/140 (47%)

Query:     6 DWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTL 65
             D+P  EDF  N  + L   ++  G+++ +   AE    +D DEA             Q L
Sbjct:     2 DFP--EDF--NQLELLDPHVIPMGTRSNW---AEEEEGEDEDEAM----HTEEWYQQQEL 50

Query:    66 ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
               QD      +++ A +     ++ L+  +P L N  DSDGY P+H AAY GH D    L
Sbjct:    51 HLQDTPSEL-MLWAAERNRCATVERLIALDPTLVNCHDSDGYTPLHRAAYSGHHDVASAL 109

Query:   126 LEATNGVDIY-RGNDGAMVL 144
             L+A  G +++ R  D  M L
Sbjct:   110 LKA--GANLHARTADDWMPL 127

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2173767 EMB506 "embryo defective 506" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 37/103 (35%), Positives = 55/103 (53%)

Query:    68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
             QD  G   + +    G L+ +K+L KYN D+ N+ D++G+ P+H A    ++D  + LL 
Sbjct:   214 QDRDGAAPIHYAVQVGALQTVKLLFKYNVDV-NVADNEGWTPLHIAVQSRNRDITKILL- 271

Query:   128 ATNGVD-IYRGNDGAMVL-LFLIAAN---LYDVALDLLKLHPT 165
              TNG D   R  DG + L L L        YD+ + LLK+ PT
Sbjct:   272 -TNGADKTRRTKDGKLALDLALCFGRDFKSYDL-VKLLKIMPT 312

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010027 "thylakoid membrane organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034850001 SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (538 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	419
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.001

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G T +   A+ G+L+ +K+LL+   D+ N +D+DG  P+H AA  GH +  + LLE
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 128 ATNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLK 161
              G D+  R  DG   L         DV   LLK
Sbjct: 62  --KGADVNARDKDGNTPLHLAARNGNLDVVKLLLK 94

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +DN G T +   A  G+L+ +K+LL+   D+ N RD DG  P+H AA  G+ D  + LL+
Sbjct: 36  KDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLK 94

Query: 128 ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL 160
               V+  R  DG   L         +V   LL
Sbjct: 95  HGADVNA-RDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 73  HTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGV 132
            TA+   A  GNL+ +K+LL++  D+ N +D DG   +H AA  G+ +  + LLE  +G 
Sbjct: 29  DTALHLAARNGNLEIVKLLLEHGADV-NAKDKDGNTALHLAARNGNLEIVKLLLE--HGA 85

Query: 133 DI 134
           DI
Sbjct: 86  DI 87

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 72  GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
           G TA+   A  G L+ +K LL+   D+ N  D DG   +H AA  G+ +  + LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 77  IFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI-Y 135
              A  GNL+ +K+LL+   D   +   D    +H AA  G+ +  + LLE  +G D+  
Sbjct: 2   HLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIVKLLLE--HGADVNA 56

Query: 136 RGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDN 170
           +  DG   L         ++   LL+    I   +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 91  LLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY-RGNDGAMVL 144
           LL++ P   N  D +G  P+H AA YG  +  Q+LL+   GVD+  R +DG   L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK--PGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNA 113
             D +G+T +   A  G L+ ++ LLK   DL N+RDSDG   +  A
Sbjct: 11  ATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 32  TIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKV- 90
           ++ H   +         A  + + +    DP   A  D  G+T +   A   + K   V 
Sbjct: 189 SLLHHHLQSFKPR----ARIVRELIRAGCDP---AATDMLGNTPLHSMATGSSCKRSLVL 241

Query: 91  -LLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIA 149
            LL     + N R+  G  P+H AA + +    + L+     ++    +DG   L  ++ 
Sbjct: 242 PLLIAGISI-NARNRYGQTPLHYAAVFNNPRACRRLIALGADINA-VSSDGNTPLSLMVR 299

Query: 150 ANLYDVALDLLKLHP 164
            N        L  +P
Sbjct: 300 NNNGRAVRAALAKNP 314

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 88  LKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI-YRGNDGAMVLLF 146
           +  LL Y     NI+D  G+ P+H A Y  + +  +YLL+   G +       G   L  
Sbjct: 175 VNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDL--GANPNLVNKYGDTPLHI 231

Query: 147 LIAANLYDVALDLLKLHPTI 166
            I  N  ++   LL   P+I
Sbjct: 232 AILNNNKEIFKLLLNNGPSI 251

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	419
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.87
PHA02741	169	hypothetical protein; Provisional	99.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.81
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
PHA02741	169	hypothetical protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.73
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
PHA02736	154	Viral ankyrin protein; Provisional	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.62
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.55
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.4
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.39
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.35
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.3
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.23
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.75
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.74
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.72
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.7
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.68
PF13606	30	Ank_3: Ankyrin repeat	98.67
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.64
PF13606	30	Ank_3: Ankyrin repeat	98.58
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.55
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.51
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.51
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.47
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.46
KOG0522	560	consensus Ankyrin repeat protein [General function	98.42
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.41
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.28
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.21
KOG2384	223	consensus Major histocompatibility complex protein	98.11
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.1
KOG0522	560	consensus Ankyrin repeat protein [General function	98.1
KOG0511	516	consensus Ankyrin repeat protein [General function	98.04
KOG0511	516	consensus Ankyrin repeat protein [General function	97.88
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.88
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.8
KOG2384	223	consensus Major histocompatibility complex protein	97.39
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.33
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.59
KOG2505	591	consensus Ankyrin repeat protein [General function	96.43
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.28
KOG2505	591	consensus Ankyrin repeat protein [General function	95.49
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.11
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.68
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.96
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.89
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.67
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.16

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.3e-40  Score=319.30  Aligned_cols=268  Identities=15%  Similarity=0.193  Sum_probs=226.6

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..||++.|+.|++..+..++.. +.+| .||||.|+ .      .|+.++|++|++.|  ++++..+..|.||||.|+
T Consensus         8 ai~~gd~~~v~~ll~~~~~~~n~~-~~~~-~tpL~~A~-~------~g~~~iv~~Ll~~G--a~~n~~~~~~~t~L~~A~   76 (434)
T PHA02874          8 CIYSGDIEAIEKIIKNKGNCINIS-VDET-TTPLIDAI-R------SGDAKIVELFIKHG--ADINHINTKIPHPLLTAI   76 (434)
T ss_pred             HHhcCCHHHHHHHHHcCCCCCCCc-CCCC-CCHHHHHH-H------cCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHH
Confidence            688999999999999888888888 8899 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCC----------------------CccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCC
Q 014730           81 AKGNLKALKVLLKYNPDL----------------------TNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGN  138 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~----------------------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~  138 (419)
                      ..|+.+++++|+++|++.                      ++.++..|.||||+|+..|+.+++++|++.|++++. .+.
T Consensus        77 ~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~-~d~  155 (434)
T PHA02874         77 KIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI-EDD  155 (434)
T ss_pred             HcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC-cCC
Confidence            999999999999887542                      466788899999999999999999999999999999 999


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccc
Q 014730          139 DGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERV  218 (419)
Q Consensus       139 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (419)
                      .|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..+..                               
T Consensus       156 ~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~g~~-------------------------------  203 (434)
T PHA02874        156 NGCYPIHIAIKHNFFDIIKLLLEKGAYAN-VKDNNGESPLHNAAEYGDY-------------------------------  203 (434)
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCH-------------------------------
Confidence            99999999999999999999999999887 7899999999999986421                               


Q ss_pred             cccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHH
Q 014730          219 PSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEI  298 (419)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (419)
                                                                                                    ++
T Consensus       204 ------------------------------------------------------------------------------~i  205 (434)
T PHA02874        204 ------------------------------------------------------------------------------AC  205 (434)
T ss_pred             ------------------------------------------------------------------------------HH
Confidence                                                                                          22


Q ss_pred             HHHHHhhhhhccccc--hhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhc-hHHHHHHHhhccc
Q 014730          299 VRIICEGVVWTNFQK--SAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHR-REKVFNLIQGVNF  375 (419)
Q Consensus       299 l~~l~~~~~~~~~~~--~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~-~~~iv~~L~~~~~  375 (419)
                      ++.+++.+.  +++.  ..+ .||||.|+..+. +.+++|+ . +++++.++..|+||||+|+..+ +.+++++|+++  
T Consensus       206 v~~Ll~~g~--~i~~~~~~g-~TpL~~A~~~~~-~~i~~Ll-~-~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~--  277 (434)
T PHA02874        206 IKLLIDHGN--HIMNKCKNG-FTPLHNAIIHNR-SAIELLI-N-NASINDQDIDGSTPLHHAINPPCDIDIIDILLYH--  277 (434)
T ss_pred             HHHHHhCCC--CCcCCCCCC-CCHHHHHHHCCh-HHHHHHH-c-CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC--
Confidence            333333332  2221  122 788888888765 5666665 5 7888888888888888888765 77888888888  


Q ss_pred             ccceeeeccCCCCccchhcccccC
Q 014730          376 TTFLFSSRDKSGNNILHLAGRLVP  399 (419)
Q Consensus       376 ~~~~~~~~D~~G~t~Lh~A~~~~~  399 (419)
                       +.+++.+|..|+||||+|++.++
T Consensus       278 -gad~n~~d~~g~TpL~~A~~~~~  300 (434)
T PHA02874        278 -KADISIKDNKGENPIDTAFKYIN  300 (434)
T ss_pred             -cCCCCCCCCCCCCHHHHHHHhCC
Confidence             66778888888888888888763

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-39  Score=319.61  Aligned_cols=272  Identities=17%  Similarity=0.133  Sum_probs=231.9

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCc---hHHHHHHHHhhCCCccccccCCCCChHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDE---ATCLLDKLATKVDPQTLARQDNHGHTAVI   77 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~   77 (419)
                      |+..++.+.|+.|++. |.+++.+ +..| .||||+|+ .      .|   +.+++++|++.|  +++|.++..|.||||
T Consensus        21 ~~~~~~~~~v~~Ll~~-ga~vn~~-~~~g-~t~Lh~a~-~------~~~~~~~~iv~~Ll~~G--adin~~~~~g~TpLh   88 (471)
T PHA03095         21 NASNVTVEEVRRLLAA-GADVNFR-GEYG-KTPLHLYL-H------YSSEKVKDIVRLLLEAG--ADVNAPERCGFTPLH   88 (471)
T ss_pred             cCCCCCHHHHHHHHHc-CCCcccC-CCCC-CCHHHHHH-H------hcCCChHHHHHHHHHCC--CCCCCCCCCCCCHHH
Confidence            4578899999999987 8999999 9999 99999999 8      88   999999999999  999999999999999


Q ss_pred             HHHHcC-CHHHHHHHHhcCCCCCccCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC--c
Q 014730           78 FCAAKG-NLKALKVLLKYNPDLTNIRDSDGYLPVHNAA--YYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN--L  152 (419)
Q Consensus        78 ~A~~~g-~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~--~  152 (419)
                      +|+..| ..+++++|+++|++ ++.++..|.||||+|+  ..++.+++++|++.|++++. .+..|.||||.|+..+  .
T Consensus        89 ~A~~~~~~~~iv~lLl~~ga~-in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~-~d~~g~tpL~~a~~~~~~~  166 (471)
T PHA03095         89 LYLYNATTLDVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA-LDLYGMTPLAVLLKSRNAN  166 (471)
T ss_pred             HHHHcCCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCCC
Confidence            999999 59999999999999 8999999999999999  55789999999999999999 9999999999998865  6


Q ss_pred             HHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCC
Q 014730          153 YDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGD  232 (419)
Q Consensus       153 ~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (419)
                      .+++++|++.|+++. ..+..|.||||+++......                                            
T Consensus       167 ~~iv~~Ll~~g~~~~-~~d~~g~t~Lh~~~~~~~~~--------------------------------------------  201 (471)
T PHA03095        167 VELLRLLIDAGADVY-AVDDRFRSLLHHHLQSFKPR--------------------------------------------  201 (471)
T ss_pred             HHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHHCCCc--------------------------------------------
Confidence            899999999999988 55999999999988742110                                            


Q ss_pred             CCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhcccc
Q 014730          233 TENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQ  312 (419)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  312 (419)
                                                                                     .++++.+.+.+.  +.+
T Consensus       202 ---------------------------------------------------------------~~i~~~Ll~~g~--~~~  216 (471)
T PHA03095        202 ---------------------------------------------------------------ARIVRELIRAGC--DPA  216 (471)
T ss_pred             ---------------------------------------------------------------HHHHHHHHHcCC--CCc
Confidence                                                                           012222233322  222


Q ss_pred             --chhhhhHHHHHHHHhChH--HHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCC
Q 014730          313 --KSAQLSGAMLSAAILGIP--EVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGN  388 (419)
Q Consensus       313 --~~~~~~t~L~~A~~~g~~--e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~  388 (419)
                        ...+ .||||+|+..|+.  .+++.|+.. |++++.++..|+||||+|+..++.+++++|++.   +.+++.+|..|+
T Consensus       217 ~~d~~g-~tpLh~Aa~~~~~~~~~v~~ll~~-g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~---gad~n~~~~~g~  291 (471)
T PHA03095        217 ATDMLG-NTPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTPLHYAAVFNNPRACRRLIAL---GADINAVSSDGN  291 (471)
T ss_pred             ccCCCC-CCHHHHHHhcCCchHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCC
Confidence              2222 7899999988864  578888888 999998888899999999999999999999988   677888899999


Q ss_pred             ccchhcccccCCC
Q 014730          389 NILHLAGRLVPSS  401 (419)
Q Consensus       389 t~Lh~A~~~~~~~  401 (419)
                      ||||+|++.|+..
T Consensus       292 tpl~~A~~~~~~~  304 (471)
T PHA03095        292 TPLSLMVRNNNGR  304 (471)
T ss_pred             CHHHHHHHhCCHH
Confidence            9999999888765

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=308.73  Aligned_cols=317  Identities=14%  Similarity=0.075  Sum_probs=239.6

Q ss_pred             cCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHc
Q 014730            3 EKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAK   82 (419)
Q Consensus         3 ~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~   82 (419)
                      ..++.++|+.|+++ |.++|.+ |..| .||||+|| .      .|+.+++++|+++|  ++++.+|..|.||||+|+..
T Consensus        48 ~~~~~~iv~~Ll~~-Gadvn~~-d~~G-~TpLh~Aa-~------~g~~eiv~lLL~~G--Adin~~d~~g~TpLh~A~~~  115 (446)
T PHA02946         48 KGLDERFVEELLHR-GYSPNET-DDDG-NYPLHIAS-K------INNNRIVAMLLTHG--ADPNACDKQHKTPLYYLSGT  115 (446)
T ss_pred             cCCCHHHHHHHHHC-cCCCCcc-CCCC-CCHHHHHH-H------cCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHc
Confidence            44577899999987 8899999 9999 99999999 9      99999999999999  99999999999999999876


Q ss_pred             C--CHHHHHHHHhcCCCCCc-cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC--cHHHHH
Q 014730           83 G--NLKALKVLLKYNPDLTN-IRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN--LYDVAL  157 (419)
Q Consensus        83 g--~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~--~~~~~~  157 (419)
                      +  ..+++++|+++|++ ++ ..+..|.|||| |+..|+.+++++|++.|++++. .+..|+||||.|+..+  +.++++
T Consensus       116 ~~~~~e~v~lLl~~Gad-in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~-~d~~G~t~Lh~A~~~~~~~~~~v~  192 (446)
T PHA02946        116 DDEVIERINLLVQYGAK-INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARI-VDKFGKNHIHRHLMSDNPKASTIS  192 (446)
T ss_pred             CCchHHHHHHHHHcCCC-cccccCCCCCcHHH-HHHCCChHHHHHHHhccccccc-cCCCCCCHHHHHHHhcCCCHHHHH
Confidence            6  48999999999999 56 46889999998 6667999999999999999999 9999999999998754  478999


Q ss_pred             HHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccc
Q 014730          158 DLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFT  237 (419)
Q Consensus       158 ~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (419)
                      +|++.|+++. .+|..|.||||+|+..+...     ....+.++...               +                 
T Consensus       193 ~Ll~~Gadin-~~d~~G~TpLH~Aa~~~~~~-----~~iv~lLl~ga---------------d-----------------  234 (446)
T PHA02946        193 WMMKLGISPS-KPDHDGNTPLHIVCSKTVKN-----VDIINLLLPST---------------D-----------------  234 (446)
T ss_pred             HHHHcCCCCc-ccCCCCCCHHHHHHHcCCCc-----HHHHHHHHcCC---------------C-----------------
Confidence            9999999998 89999999999999864211     11122121000               0                 


Q ss_pred             cccccCCCCCC-CCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhh
Q 014730          238 VTSKMHPKEST-PFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQ  316 (419)
Q Consensus       238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  316 (419)
                            ..... ....|.+.++..++.......+.......  .+.+.-.+...+....++++.   +.+.      ..+
T Consensus       235 ------in~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~--~~~~~~~a~~~~~~~~~e~l~---~~g~------~~~  297 (446)
T PHA02946        235 ------VNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVI--TDQTVNICIFYDRDDVLEIIN---DKGK------QYD  297 (446)
T ss_pred             ------CCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCC--CCcHHHHHHHcCchHHHHHHH---HcCc------ccC
Confidence                  00011 12236677766655433333333222111  111111222223333333332   2221      112


Q ss_pred             hhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhccc
Q 014730          317 LSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGR  396 (419)
Q Consensus       317 ~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~  396 (419)
                       .||||+|+.+|+.++|++||++ ++       .|+||||+|+.+++.+++++|+.+   +.+++.. .+|+||||+|++
T Consensus       298 -~TpLh~Aa~~g~~eivk~Ll~~-~~-------~~~t~L~~A~~~~~~~~v~~Ll~~---ga~~n~~-~~G~t~l~~a~~  364 (446)
T PHA02946        298 -STDFKMAVEVGSIRCVKYLLDN-DI-------ICEDAMYYAVLSEYETMVDYLLFN---HFSVDSV-VNGHTCMSECVR  364 (446)
T ss_pred             -CCHHHHHHHcCCHHHHHHHHHC-CC-------ccccHHHHHHHhCHHHHHHHHHHC---CCCCCCc-cccccHHHHHHH
Confidence             6999999999999999999998 75       579999999999999999999999   5566764 589999999999


Q ss_pred             ccCCCC
Q 014730          397 LVPSSE  402 (419)
Q Consensus       397 ~~~~~~  402 (419)
                      .+...+
T Consensus       365 ~~~~~~  370 (446)
T PHA02946        365 LNNPVI  370 (446)
T ss_pred             cCCHHH
Confidence            988774

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.2e-37  Score=311.43  Aligned_cols=321  Identities=13%  Similarity=0.034  Sum_probs=229.6

Q ss_pred             cCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHc
Q 014730            3 EKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAK   82 (419)
Q Consensus         3 ~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~   82 (419)
                      +.++.+++++|+++...++|.+.+..| .||||.|+ .    ...++.+++++|+++|  ++++.+|..|.||||+|+..
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G-~TpLH~A~-~----n~~~~~eIVklLLe~G--ADVN~kD~~G~TPLH~Aa~~  222 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTG-YGILHAYL-G----NMYVDIDILEWLCNNG--VNVNLQNNHLITPLHTYLIT  222 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCC-CcHHHHHH-H----hccCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHc
Confidence            468999999999883288888756778 99999986 4    1146799999999999  99999999999999999999


Q ss_pred             CC--HHHHHHHHhcCCCCCccCCCCCchHHHHH-------------------------------------HHcCCHHHHH
Q 014730           83 GN--LKALKVLLKYNPDLTNIRDSDGYLPVHNA-------------------------------------AYYGHKDTFQ  123 (419)
Q Consensus        83 g~--~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A-------------------------------------~~~g~~~~~~  123 (419)
                      |+  .+++++|+++|++ ++.++..|.||||.|                                     +..|+.++++
T Consensus       223 g~~~~eIVklLLe~GAD-VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVk  301 (764)
T PHA02716        223 GNVCASVIKKIIELGGD-MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVY  301 (764)
T ss_pred             CCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHH
Confidence            95  5899999999999 899999999999965                                     4457889999


Q ss_pred             HHHhcCCCCccccCCCCCcHHHHHHH--cCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHH
Q 014730          124 YLLEATNGVDIYRGNDGAMVLLFLIA--ANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLI  201 (419)
Q Consensus       124 ~Ll~~g~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~  201 (419)
                      +|++.|++++. ++..|+||||+|+.  .++.+++++|++.|+++. .+|..|.||||+|+....... .  +   .   
T Consensus       302 lLLe~GAdIN~-kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~lav~~-~--l---d---  370 (764)
T PHA02716        302 SFLQPGVKLHY-KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSMLSVVN-I--L---D---  370 (764)
T ss_pred             HHHhCCCceec-cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhhhhhc-c--c---c---
Confidence            99999999999 99999999999864  467899999999999987 899999999999865311000 0  0   0   


Q ss_pred             HhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhh--hcC
Q 014730          202 YNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALM--RLA  279 (419)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  279 (419)
                       ..                                                    ....+....+..++..+.+.  ...
T Consensus       371 -~~----------------------------------------------------~~~~~~~eVVklLL~~GADIn~kn~  397 (764)
T PHA02716        371 -PE----------------------------------------------------TDNDIRLDVIQCLISLGADITAVNC  397 (764)
T ss_pred             -cc----------------------------------------------------ccccChHHHHHHHHHCCCCCCCcCC
Confidence             00                                                    00001112222233333332  233


Q ss_pred             chhHHHH--HHhhhhHhHHHHHHHHHhhhhhccc---------cchhhhhHHHHHHHHhChHH-----------------
Q 014730          280 PSIKVIH--DQKLTHMRTVEIVRIICEGVVWTNF---------QKSAQLSGAMLSAAILGIPE-----------------  331 (419)
Q Consensus       280 ~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~---------~~~~~~~t~L~~A~~~g~~e-----------------  331 (419)
                      .|.++++  ++...+....++++.|++.......         ...+....++|.++..++.+                 
T Consensus       398 ~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~  477 (764)
T PHA02716        398 LGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIH  477 (764)
T ss_pred             CCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccc
Confidence            3556663  2222222223455555554310000         00110022355555444332                 


Q ss_pred             -HHHHHHHhcCCccccccCCCCchHHHHHhhchH-----HHHHHHhhcccccceeeeccCCCCccchhcccccCC
Q 014730          332 -VVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRRE-----KVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPS  400 (419)
Q Consensus       332 -~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~-----~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~  400 (419)
                       ++..++.. +.+++.++..|+||||+|+..++.     +++++|++.   +.+++.+|.+|.||||+|++.|+.
T Consensus       478 ~v~~~~ii~-~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~---GADIN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        478 DVYHCAIIE-RYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI---QYNINIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             hhhHHHHHh-hccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC---CCCCcccCCCCCCHHHHHHHcCCc
Confidence             33444455 677888899999999999998876     456999999   788999999999999999999975

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-37  Score=306.53  Aligned_cols=266  Identities=16%  Similarity=0.162  Sum_probs=232.1

Q ss_pred             ChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHH-----HH
Q 014730            6 DWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIF-----CA   80 (419)
Q Consensus         6 ~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~-----A~   80 (419)
                      ....++.+++. +...+.. +..| .||||+|+ .      .|+.++|++|++.|  ++++..+..|.||||+     |+
T Consensus        14 ~~~~~~~~~~~-~~~~~~~-~~~~-~t~L~~A~-~------~~~~~ivk~Ll~~g--~~~~~~~~~~~t~L~~~~~~~a~   81 (480)
T PHA03100         14 KVKNIKYIIME-DDLNDYS-YKKP-VLPLYLAK-E------ARNIDVVKILLDNG--ADINSSTKNNSTPLHYLSNIKYN   81 (480)
T ss_pred             HHHHHHHHHhc-Cccchhh-hccc-chhhhhhh-c------cCCHHHHHHHHHcC--CCCCCccccCcCHHHHHHHHHHH
Confidence            34677888866 5555566 8889 99999999 9      99999999999999  9999999999999999     99


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC--cHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAA--YYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN--LYDVA  156 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~--~~~~~  156 (419)
                      ..|+.+++++|+++|++ ++..+..|.||||+|+  ..|+.+++++|+++|++++. .+..|.||||.|+..+  +.+++
T Consensus        82 ~~~~~~iv~~Ll~~ga~-i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~iv  159 (480)
T PHA03100         82 LTDVKEIVKLLLEYGAN-VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI-KNSDGENLLHLYLESNKIDLKIL  159 (480)
T ss_pred             hhchHHHHHHHHHCCCC-CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCChHHHH
Confidence            99999999999999999 6999999999999999  99999999999999999999 9999999999999999  99999


Q ss_pred             HHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcc
Q 014730          157 LDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENF  236 (419)
Q Consensus       157 ~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (419)
                      ++|++.|+++. .++..|.||||+|+..+..                                                 
T Consensus       160 ~~Ll~~g~din-~~d~~g~tpL~~A~~~~~~-------------------------------------------------  189 (480)
T PHA03100        160 KLLIDKGVDIN-AKNRYGYTPLHIAVEKGNI-------------------------------------------------  189 (480)
T ss_pred             HHHHHCCCCcc-cccCCCCCHHHHHHHhCCH-------------------------------------------------
Confidence            99999999987 7888999999999987421                                                 


Q ss_pred             ccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchh-
Q 014730          237 TVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSA-  315 (419)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-  315 (419)
                                                                                  ++++.+++.+.  +.+..+ 
T Consensus       190 ------------------------------------------------------------~iv~~Ll~~ga--~~~~~~~  207 (480)
T PHA03100        190 ------------------------------------------------------------DVIKFLLDNGA--DINAGDI  207 (480)
T ss_pred             ------------------------------------------------------------HHHHHHHHcCC--CccCCCC
Confidence                                                                        22222222222  211110 


Q ss_pred             -hh-----hHHHHHHHHhCh--HHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCC
Q 014730          316 -QL-----SGAMLSAAILGI--PEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSG  387 (419)
Q Consensus       316 -~~-----~t~L~~A~~~g~--~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G  387 (419)
                       +.     .||||.|+..|+  .++|++|++. |++++.++..|+||||+|+..++.+++++|++.   +.+++.+|..|
T Consensus       208 ~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~---gad~n~~d~~g  283 (480)
T PHA03100        208 ETLLFTIFETPLHIAACYNEITLEVVNYLLSY-GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL---GANPNLVNKYG  283 (480)
T ss_pred             CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCC
Confidence             00     689999999999  9999999999 999999999999999999999999999999999   56889999999


Q ss_pred             CccchhcccccCCC
Q 014730          388 NNILHLAGRLVPSS  401 (419)
Q Consensus       388 ~t~Lh~A~~~~~~~  401 (419)
                      .||||+|++.+...
T Consensus       284 ~tpl~~A~~~~~~~  297 (480)
T PHA03100        284 DTPLHIAILNNNKE  297 (480)
T ss_pred             CcHHHHHHHhCCHH
Confidence            99999999988765

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-37  Score=315.56  Aligned_cols=328  Identities=13%  Similarity=0.037  Sum_probs=235.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.++++.|++. |.++|.+ |..| .||||+|| .      .|+.++|++|++.|  ++++..+..|.||||+|+
T Consensus       152 ~i~~~~~~i~k~Ll~~-Gadvn~~-d~~G-~TpLh~Aa-~------~G~~~iv~~LL~~G--ad~n~~~~~g~t~L~~A~  219 (682)
T PHA02876        152 RIQQDELLIAEMLLEG-GADVNAK-DIYC-ITPIHYAA-E------RGNAKMVNLLLSYG--ADVNIIALDDLSVLECAV  219 (682)
T ss_pred             HHHCCcHHHHHHHHhC-CCCCCCC-CCCC-CCHHHHHH-H------CCCHHHHHHHHHCC--CCcCccCCCCCCHHHHHH
Confidence            3578999999999988 8999999 9999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcH-HHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLY-DVALDL  159 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~L  159 (419)
                      ..|+.+++++|++.+.+ ++    .+.++++.|+..++.+.+++|++.|++++. .+..|.||||+|+..++. +++++|
T Consensus       220 ~~~~~~ivk~Ll~~~~~-~~----~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~-~d~~g~TpLh~Aa~~~~~~~iv~lL  293 (682)
T PHA02876        220 DSKNIDTIKAIIDNRSN-IN----KNDLSLLKAIRNEDLETSLLLYDAGFSVNS-IDDCKNTPLHHASQAPSLSRLVPKL  293 (682)
T ss_pred             HcCCHHHHHHHHhcCCC-CC----CCcHHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHhCCCHHHHHHHH
Confidence            99999999999988766 22    244677777777777777777777777776 677777777777777664 477777


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccc
Q 014730          160 LKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVT  239 (419)
Q Consensus       160 l~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (419)
                      ++.|+++. ..|..|.||||+|+..+..      ....+.++...              .++..                
T Consensus       294 l~~gadin-~~d~~g~TpLh~Aa~~g~~------~~~v~~Ll~~g--------------adin~----------------  336 (682)
T PHA02876        294 LERGADVN-AKNIKGETPLYLMAKNGYD------TENIRTLIMLG--------------ADVNA----------------  336 (682)
T ss_pred             HHCCCCCC-CcCCCCCCHHHHHHHhCCC------HHHHHHHHHcC--------------CCCCC----------------
Confidence            77777765 6677777777777765311      11111111110              00000                


Q ss_pred             cccCCCCCCCCCChhhHHHHHhhHHHHHHHH-HHHHhh--hcCchhHHH-HHHhhhhHhHHHHHHHHHhhhhhccccchh
Q 014730          240 SKMHPKESTPFGSTQQITAIFGLMFHKLNRM-LWNALM--RLAPSIKVI-HDQKLTHMRTVEIVRIICEGVVWTNFQKSA  315 (419)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  315 (419)
                            .......+.+.++..+....+...+ ..+...  ....+.+++ +++..++..   +++.+++.+.  +++..+
T Consensus       337 ------~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~---iv~~Ll~~ga--d~~~~~  405 (682)
T PHA02876        337 ------ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVV---IINTLLDYGA--DIEALS  405 (682)
T ss_pred             ------cccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHH---HHHHHHHCCC--CccccC
Confidence                  0001112445554444333333322 222222  334466666 666666664   4444456654  433222


Q ss_pred             hh-hHHHHHHHHhCh-HHHHHHHHHhcCCccccccCCCCchHHHHHhhc-hHHHHHHHhhcccccceeeeccCCCCccch
Q 014730          316 QL-SGAMLSAAILGI-PEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHR-REKVFNLIQGVNFTTFLFSSRDKSGNNILH  392 (419)
Q Consensus       316 ~~-~t~L~~A~~~g~-~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~-~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh  392 (419)
                      .. .||||+|+..++ .+++++|++. |++++.+|..|+||||+|+..+ +.+++++|++.   +.+++.+|..|+||||
T Consensus       406 ~~g~T~Lh~A~~~~~~~~~vk~Ll~~-gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~---Gad~n~~d~~g~tpl~  481 (682)
T PHA02876        406 QKIGTALHFALCGTNPYMSVKTLIDR-GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN---GADVNAINIQNQYPLL  481 (682)
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHhC-CCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC---CCCCCCCCCCCCCHHH
Confidence            11 799999987665 5789999999 9999999999999999999976 78999999999   6788999999999999


Q ss_pred             hccccc
Q 014730          393 LAGRLV  398 (419)
Q Consensus       393 ~A~~~~  398 (419)
                      +|+..+
T Consensus       482 ~a~~~~  487 (682)
T PHA02876        482 IALEYH  487 (682)
T ss_pred             HHHHhC
Confidence            999754

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=312.03  Aligned_cols=336  Identities=16%  Similarity=0.135  Sum_probs=258.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhh---------------------------------------
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELL---------------------------------------   41 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~---------------------------------------   41 (419)
                      |++.|+.++|+.|+++.|..++.. |..| .||||+|+ ..                                       
T Consensus        48 A~~~g~~e~V~~ll~~~~~~~~~~-~~~~-~tpLh~a~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  124 (682)
T PHA02876         48 ALQLRQIDIVEEIIQQNPELIYIT-DHKC-HSTLHTIC-IIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHI  124 (682)
T ss_pred             HHHHHhhhHHHHHHHhCcccchhh-chhh-cccccccc-CCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHH
Confidence            788999999999999988777777 8889 99999776 32                                       


Q ss_pred             -------------------------cccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 014730           42 -------------------------VDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNP   96 (419)
Q Consensus        42 -------------------------~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~   96 (419)
                                               ..+++.|+.+++++|++.|  ++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       125 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~G--advn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Ga  202 (682)
T PHA02876        125 LKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGG--ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGA  202 (682)
T ss_pred             HHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCC--CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence                                     1223578899999999999  9999999999999999999999999999999999


Q ss_pred             CCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCc
Q 014730           97 DLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRI  176 (419)
Q Consensus        97 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~  176 (419)
                      + ++..+..|.||||+|+..|+.+++++|++.+.+++.     +.++++.|+..++.+++++|++.|.++. ..+..|.|
T Consensus       203 d-~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~-----~~~~L~~ai~~~~~~~~~~Ll~~g~~vn-~~d~~g~T  275 (682)
T PHA02876        203 D-VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK-----NDLSLLKAIRNEDLETSLLLYDAGFSVN-SIDDCKNT  275 (682)
T ss_pred             C-cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC-----CcHHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCC
Confidence            9 799999999999999999999999999999875533     4578999999999999999999999887 78899999


Q ss_pred             HHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhH
Q 014730          177 VLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQI  256 (419)
Q Consensus       177 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (419)
                      |||+|+..+..      ......++..              +.++..                      .......+.+.
T Consensus       276 pLh~Aa~~~~~------~~iv~lLl~~--------------gadin~----------------------~d~~g~TpLh~  313 (682)
T PHA02876        276 PLHHASQAPSL------SRLVPKLLER--------------GADVNA----------------------KNIKGETPLYL  313 (682)
T ss_pred             HHHHHHhCCCH------HHHHHHHHHC--------------CCCCCC----------------------cCCCCCCHHHH
Confidence            99999986431      1112222111              000000                      00112236777


Q ss_pred             HHHHhh-HHHHHHHHHHHHhh--hcCchhHHH-HHHhhh-hHhHHHHHHHHHhhhhhccccchhhh-hHHHHHHHHhChH
Q 014730          257 TAIFGL-MFHKLNRMLWNALM--RLAPSIKVI-HDQKLT-HMRTVEIVRIICEGVVWTNFQKSAQL-SGAMLSAAILGIP  330 (419)
Q Consensus       257 ~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~-~t~L~~A~~~g~~  330 (419)
                      ++..+. ...+..++..+.+.  ....+.+++ +++..+ +..   +...+.+.+.  +++..+.. .||||+|+..|+.
T Consensus       314 Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~---iv~lLl~~ga--din~~d~~G~TpLh~Aa~~~~~  388 (682)
T PHA02876        314 MAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKD---IVITLLELGA--NVNARDYCDKTPIHYAAVRNNV  388 (682)
T ss_pred             HHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHH---HHHHHHHcCC--CCccCCCCCCCHHHHHHHcCCH
Confidence            777664 33344444443333  334466666 444433 333   3334455554  44433222 8999999999999


Q ss_pred             HHHHHHHHhcCCccccccCCCCchHHHHHhhch-HHHHHHHhhcccccceeeeccCCCCccchhcccccC
Q 014730          331 EVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRR-EKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVP  399 (419)
Q Consensus       331 e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~-~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~  399 (419)
                      ++|++|++. |++++..+..|.||||+|+..++ ..++++|++.   +.+++.+|..|+||||+||+.|.
T Consensus       389 ~iv~~Ll~~-gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~---gadin~~d~~G~TpLh~Aa~~~~  454 (682)
T PHA02876        389 VIINTLLDY-GADIEALSQKIGTALHFALCGTNPYMSVKTLIDR---GANVNSKNKDLSTPLHYACKKNC  454 (682)
T ss_pred             HHHHHHHHC-CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhC---CCCCCcCCCCCChHHHHHHHhCC
Confidence            999999999 99999999999999999987655 5689999999   67889999999999999998774

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=290.66  Aligned_cols=270  Identities=18%  Similarity=0.157  Sum_probs=224.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCC------------------
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDP------------------   62 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~------------------   62 (419)
                      |++.|+.++|++|++. |.+++.. +..| .||||.|+ .      .|+.+++++|++.|..                  
T Consensus        42 A~~~g~~~iv~~Ll~~-Ga~~n~~-~~~~-~t~L~~A~-~------~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll  111 (434)
T PHA02874         42 AIRSGDAKIVELFIKH-GADINHI-NTKI-PHPLLTAI-K------IGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL  111 (434)
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCCC-CCCC-CCHHHHHH-H------cCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence            6889999999999987 8899988 9999 99999999 9      9999999999987711                  


Q ss_pred             ---ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCC
Q 014730           63 ---QTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGND  139 (419)
Q Consensus        63 ---~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~  139 (419)
                         .+++.++..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|++.|++++. .+..
T Consensus       112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~-~~~~  189 (434)
T PHA02874        112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV-KDNN  189 (434)
T ss_pred             HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-CCCC
Confidence               34667888999999999999999999999999999 799999999999999999999999999999999999 9999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCccccccc
Q 014730          140 GAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVP  219 (419)
Q Consensus       140 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (419)
                      |.||||.|+..|+.+++++|++.|+++. .++..|.||||.|+.....        ..                      
T Consensus       190 g~tpL~~A~~~g~~~iv~~Ll~~g~~i~-~~~~~g~TpL~~A~~~~~~--------~i----------------------  238 (434)
T PHA02874        190 GESPLHNAAEYGDYACIKLLIDHGNHIM-NKCKNGFTPLHNAIIHNRS--------AI----------------------  238 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHCChH--------HH----------------------
Confidence            9999999999999999999999999987 7889999999999875310        00                      


Q ss_pred             ccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHH
Q 014730          220 SIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIV  299 (419)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  299 (419)
                                                                                                   .++
T Consensus       239 -----------------------------------------------------------------------------~~L  241 (434)
T PHA02874        239 -----------------------------------------------------------------------------ELL  241 (434)
T ss_pred             -----------------------------------------------------------------------------HHH
Confidence                                                                                         000


Q ss_pred             HHHHhhhhhccccchhhhhHHHHHHHHhC-hHHHHHHHHHhcCCccccccCCCCchHHHHHhhc-hHHHHHHHhhccccc
Q 014730          300 RIICEGVVWTNFQKSAQLSGAMLSAAILG-IPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHR-REKVFNLIQGVNFTT  377 (419)
Q Consensus       300 ~~l~~~~~~~~~~~~~~~~t~L~~A~~~g-~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~-~~~iv~~L~~~~~~~  377 (419)
                         ...... +.....+ .||||+|+..+ +.+++++|++. |++++.++..|+||||+|++++ +.++++.|+...   
T Consensus       242 ---l~~~~i-n~~d~~G-~TpLh~A~~~~~~~~iv~~Ll~~-gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~---  312 (434)
T PHA02874        242 ---INNASI-NDQDIDG-STPLHHAINPPCDIDIIDILLYH-KADISIKDNKGENPIDTAFKYINKDPVIKDIIANA---  312 (434)
T ss_pred             ---HcCCCC-CCcCCCC-CCHHHHHHhcCCcHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhc---
Confidence               000000 1112223 89999999876 89999999999 9999999999999999999987 778999999983   


Q ss_pred             ceeeeccCCC-CccchhcccccC
Q 014730          378 FLFSSRDKSG-NNILHLAGRLVP  399 (419)
Q Consensus       378 ~~~~~~D~~G-~t~Lh~A~~~~~  399 (419)
                      ......+..+ .+++.++...+.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~i~~~  335 (434)
T PHA02874        313 VLIKEADKLKDSDFLEHIEIKDN  335 (434)
T ss_pred             CchhhccccchhHHHHHHHHhcc
Confidence            2333334433 555666554433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-36  Score=290.35  Aligned_cols=300  Identities=17%  Similarity=0.144  Sum_probs=232.7

Q ss_pred             ccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q 014730           20 ALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLT   99 (419)
Q Consensus        20 ~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~   99 (419)
                      ...++ |..| .||||.|+ .      ....+.+++|++.|  ++.+..+.++.+|+|+|+..|+.+.++.|+++|.+ +
T Consensus        80 ~~~a~-D~~~-n~~l~~a~-~------~~~~~~i~~Lls~g--ad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-v  147 (929)
T KOG0510|consen   80 ISYAK-DSAD-NTPLHAAV-E------YNQGDKIQVLLSYG--ADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-V  147 (929)
T ss_pred             hhhhh-hccc-CchhHHHh-h------cchHHHHHHHHhcC--CCCChhhhhccCchhhccccchHHHHHHHHHhcCC-c
Confidence            34456 8888 99999999 8      99999999999999  89999999999999999999999999999999988 8


Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHh-----hCCCCCcCCCCCC
Q 014730          100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLK-----LHPTIGRDNIDSR  174 (419)
Q Consensus       100 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-----~~~~~~~~~~~~g  174 (419)
                      +..+..|.||||+||..++.|..+.|++.|+++-. .+.+|++|+|.|+.+|..++.+.++.     ++..++ ..+..|
T Consensus       148 nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K-~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-~~~n~~  225 (929)
T KOG0510|consen  148 NLEDENGFTPLHLAARKNKVEAKKELINKGADPCK-SDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN-FDNNEK  225 (929)
T ss_pred             cccccCCCchhhHHHhcChHHHHHHHHhcCCCCCc-ccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc-cccCCC
Confidence            99999999999999999999988999999999988 89999999999999999999999998     455665 678889


Q ss_pred             CcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChh
Q 014730          175 RIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQ  254 (419)
Q Consensus       175 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (419)
                      .+|||.|...+....-...+.-....  .                                                 . 
T Consensus       226 ~~pLhlAve~g~~e~lk~~L~n~~~~--a-------------------------------------------------~-  253 (929)
T KOG0510|consen  226 ATPLHLAVEGGDIEMLKMCLQNGKKI--A-------------------------------------------------D-  253 (929)
T ss_pred             CcchhhhhhcCCHHHHHHHHhCcccc--c-------------------------------------------------h-
Confidence            99999999887554221111100000  0                                                 0 


Q ss_pred             hHHHHHhhHHHHHHHHHHHHhhhcCchhHHH-HHHhhhhHhHHHHHHHHHhhhhhccccc--hhhhhHHHHHHHHhChHH
Q 014730          255 QITAIFGLMFHKLNRMLWNALMRLAPSIKVI-HDQKLTHMRTVEIVRIICEGVVWTNFQK--SAQLSGAMLSAAILGIPE  331 (419)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~t~L~~A~~~g~~e  331 (419)
                          ..-......+.+.   ...+.++++++ +++..|+...++.|.   ..+.  +++.  .++ .||||.||+.|+++
T Consensus       254 ----~~~~~~~q~kelv---~~~d~dg~tpLH~a~r~G~~~svd~Ll---~~Ga--~I~~kn~d~-~spLH~AA~yg~~n  320 (929)
T KOG0510|consen  254 ----VQLDAMQQEKELV---NDEDNDGCTPLHYAARQGGPESVDNLL---GFGA--SINSKNKDE-ESPLHFAAIYGRIN  320 (929)
T ss_pred             ----hhhHHHHHHHHHh---hcccccCCchHHHHHHcCChhHHHHHH---HcCC--cccccCCCC-CCchHHHHHcccHH
Confidence                0000111111111   12345678888 888888886666554   4433  3322  223 89999999999999


Q ss_pred             HHHHHHH-hcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceee---eccCCCCccchhcccccCCC
Q 014730          332 VVNEFIM-AYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFS---SRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       332 ~v~~Ll~-~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~---~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +|+-||+ ..-...|..|..|+||||+|+++||..++++|++.|   .+..   ..|..|+||||.||+.|..+
T Consensus       321 tv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G---A~~~~~~e~D~dg~TaLH~Aa~~g~~~  391 (929)
T KOG0510|consen  321 TVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG---ALFLNMSEADSDGNTALHLAAKYGNTS  391 (929)
T ss_pred             HHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC---hhhhcccccccCCchhhhHHHHhccHH
Confidence            9999999 423356777789999999999999999999999995   2222   55999999999999999987

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=294.49  Aligned_cols=249  Identities=18%  Similarity=0.187  Sum_probs=222.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHH-----HHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHT-----IAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTA   75 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~-----A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~   75 (419)
                      |+..|+.++|+.|+++ |.+++.. +..| .||||+     |+ .      .|+.++++.|++.|  ++++..|..|.||
T Consensus        42 A~~~~~~~ivk~Ll~~-g~~~~~~-~~~~-~t~L~~~~~~~a~-~------~~~~~iv~~Ll~~g--a~i~~~d~~g~tp  109 (480)
T PHA03100         42 AKEARNIDVVKILLDN-GADINSS-TKNN-STPLHYLSNIKYN-L------TDVKEIVKLLLEYG--ANVNAPDNNGITP  109 (480)
T ss_pred             hhccCCHHHHHHHHHc-CCCCCCc-cccC-cCHHHHHHHHHHH-h------hchHHHHHHHHHCC--CCCCCCCCCCCch
Confidence            7899999999999988 8899888 8899 999999     99 8      99999999999999  8999999999999


Q ss_pred             HHHHH--HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC
Q 014730           76 VIFCA--AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYG--HKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN  151 (419)
Q Consensus        76 L~~A~--~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~  151 (419)
                      ||+|+  ..|+.+++++|+++|++ ++..+..|.||||+|+..|  +.+++++|+++|++++. .+..|.||||.|+..|
T Consensus       110 L~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~-~d~~g~tpL~~A~~~~  187 (480)
T PHA03100        110 LLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINA-KNRYGYTPLHIAVEKG  187 (480)
T ss_pred             hhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccc-ccCCCCCHHHHHHHhC
Confidence            99999  99999999999999999 7999999999999999999  99999999999999999 8899999999999999


Q ss_pred             cHHHHHHHHhhCCCCCcCCCCCC------CcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCC
Q 014730          152 LYDVALDLLKLHPTIGRDNIDSR------RIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSND  225 (419)
Q Consensus       152 ~~~~~~~Ll~~~~~~~~~~~~~g------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (419)
                      +.+++++|++.|+++. ..+..|      .||+|.|+..+..                                      
T Consensus       188 ~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~~t~l~~a~~~~~~--------------------------------------  228 (480)
T PHA03100        188 NIDVIKFLLDNGADIN-AGDIETLLFTIFETPLHIAACYNEI--------------------------------------  228 (480)
T ss_pred             CHHHHHHHHHcCCCcc-CCCCCCCcHHHHHhHHHHHHHhCcC--------------------------------------
Confidence            9999999999999987 778888      6777777664320                                      


Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhh
Q 014730          226 DQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEG  305 (419)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  305 (419)
                                                                                           ..++++.+++.
T Consensus       229 ---------------------------------------------------------------------~~~iv~~Ll~~  239 (480)
T PHA03100        229 ---------------------------------------------------------------------TLEVVNYLLSY  239 (480)
T ss_pred             ---------------------------------------------------------------------cHHHHHHHHHc
Confidence                                                                                 01344444555


Q ss_pred             hhhccccchhhh-hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          306 VVWTNFQKSAQL-SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       306 ~~~~~~~~~~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      +.  +++..+.. .||||.|+..|+.++|++|++. |+|++..+..|+||||+|+..++.+++++|++++
T Consensus       240 g~--din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g  306 (480)
T PHA03100        240 GV--PINIKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG  306 (480)
T ss_pred             CC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Confidence            44  33322211 8999999999999999999999 9999999999999999999999999999999995

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-35  Score=267.60  Aligned_cols=161  Identities=12%  Similarity=0.028  Sum_probs=138.7

Q ss_pred             CCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcC
Q 014730            4 KNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKG   83 (419)
Q Consensus         4 ~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g   83 (419)
                      .++.+.++.|+++ +.  +.+ |.+| .||||+|+ .      .|+.+++++|++.|  ++++..+  |.||||+|+..|
T Consensus         9 ~~~~~~~~~Lis~-~a--~~~-D~~G-~TpLh~Aa-~------~g~~eiv~~Ll~~g--a~~n~~d--~~TpLh~Aa~~g   72 (284)
T PHA02791          9 WKSKQLKSFLSSK-DA--FKA-DVHG-HSALYYAI-A------DNNVRLVCTLLNAG--ALKNLLE--NEFPLHQAATLE   72 (284)
T ss_pred             cCHHHHHHHHHhC-CC--CCC-CCCC-CcHHHHHH-H------cCCHHHHHHHHHCc--CCCcCCC--CCCHHHHHHHCC
Confidence            3567888888886 43  456 8899 99999999 9      99999999999999  7777654  689999999999


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCC-CcHHHHHHHcCcHHHHHHHHhh
Q 014730           84 NLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDG-AMVLLFLIAANLYDVALDLLKL  162 (419)
Q Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~  162 (419)
                      +.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|++.|++++. .+..| .||||+|+..|+.+++++|+++
T Consensus        73 ~~eiV~lLL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~-~~~~g~~TpL~~Aa~~g~~eivk~LL~~  150 (284)
T PHA02791         73 DTKIVKILLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFYHAVMLNDVSIVSYFLSE  150 (284)
T ss_pred             CHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCCCCcHHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999998 789999999999999999999999999999999988 78777 5899999999999999999988


Q ss_pred             CCCCCcCCC-CCCCcHHHHHHhCC
Q 014730          163 HPTIGRDNI-DSRRIVLNTLSQKP  185 (419)
Q Consensus       163 ~~~~~~~~~-~~g~~~l~~a~~~~  185 (419)
                      ++..   .| ..|.||||+|+..+
T Consensus       151 ~~~~---~d~~~g~TpLh~Aa~~g  171 (284)
T PHA02791        151 IPST---FDLAILLSCIHITIKNG  171 (284)
T ss_pred             CCcc---cccccCccHHHHHHHcC
Confidence            7543   22 24788888887764

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.9e-35  Score=290.19  Aligned_cols=169  Identities=17%  Similarity=0.178  Sum_probs=144.8

Q ss_pred             cCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHc
Q 014730            3 EKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAK   82 (419)
Q Consensus         3 ~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~   82 (419)
                      ...+.++|+.|++. |.++|.+ + .| .||||.++ .    ...++.++|++|+++|  +++|.++ .+.||||.|+..
T Consensus        12 ~~~~~~~v~~LL~~-GadvN~~-~-~g-~t~l~~~~-~----~~~~~~~iv~~Ll~~G--Advn~~~-~~~tpL~~a~~~   79 (494)
T PHA02989         12 DTVDKNALEFLLRT-GFDVNEE-Y-RG-NSILLLYL-K----RKDVKIKIVKLLIDNG--ADVNYKG-YIETPLCAVLRN   79 (494)
T ss_pred             CcCcHHHHHHHHHc-CCCcccc-c-CC-CCHHHHHH-h----cCCCChHHHHHHHHcC--CCccCCC-CCCCcHHHHHhc
Confidence            46789999999987 8899887 4 57 89987765 3    0024799999999999  9999876 579999999865


Q ss_pred             C------CHHHHHHHHhcCCCCCccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCC-ccccCCCCCcHHHHHHHc--
Q 014730           83 G------NLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYY---GHKDTFQYLLEATNGV-DIYRGNDGAMVLLFLIAA--  150 (419)
Q Consensus        83 g------~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~-~~~~~~~g~t~l~~a~~~--  150 (419)
                      +      +.+++++|+++|++ ++.++..|.||||.|+..   |+.+++++|+++|+++ +. .+..|.||||+|+..  
T Consensus        80 ~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~-~d~~g~tpLh~a~~~~~  157 (494)
T PHA02989         80 REITSNKIKKIVKLLLKFGAD-INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDV-KNSRGYNLLHMYLESFS  157 (494)
T ss_pred             cCcchhhHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccc-cCCCCCCHHHHHHHhcc
Confidence            4      57899999999999 899999999999988765   6899999999999999 78 899999999998764  


Q ss_pred             CcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          151 NLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       151 ~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      ++.+++++|++.|+++....+..|.||||+++...
T Consensus       158 ~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~  192 (494)
T PHA02989        158 VKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRND  192 (494)
T ss_pred             CCHHHHHHHHHcCCCccccccccCCChHHHHHhcc
Confidence            68999999999999987336889999999987753

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-35  Score=285.95  Aligned_cols=244  Identities=11%  Similarity=0.051  Sum_probs=157.1

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      +++||.|+ .      .|+.+++++|++.|  ++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..+.|||
T Consensus         3 ~~~L~~A~-~------~g~~~iv~~Ll~~g--~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L   72 (413)
T PHA02875          3 QVALCDAI-L------FGELDIARRLLDIG--INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESEL   72 (413)
T ss_pred             chHHHHHH-H------hCCHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHH
Confidence            55666666 6      66666666666666  66666666666666666666666666666666665 455555666666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCC
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFAS  190 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~  190 (419)
                      |.|+..|+.+++++|++.|+..+...+..|.||||+|+..|+.+++++|++.|+++. .++..|.||||+|+..+..   
T Consensus        73 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~~~g~tpLh~A~~~~~~---  148 (413)
T PHA02875         73 HDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDI---  148 (413)
T ss_pred             HHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCH---
Confidence            666666666666666666654432134556666666666666666666666666655 5566666666666654310   


Q ss_pred             CCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHH
Q 014730          191 GSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRM  270 (419)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (419)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (413)
T PHA02875        149 --------------------------------------------------------------------------------  148 (413)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccc--hhhhhHHHHHHHHhChHHHHHHHHHhcCCcccccc
Q 014730          271 LWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQK--SAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSN  348 (419)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~  348 (419)
                                                +.++.+++.+.  +++.  ..+ .||||+|+..|+.+++++|++. |++++..+
T Consensus       149 --------------------------~~v~~Ll~~g~--~~~~~d~~g-~TpL~~A~~~g~~eiv~~Ll~~-ga~~n~~~  198 (413)
T PHA02875        149 --------------------------KGIELLIDHKA--CLDIEDCCG-CTPLIIAMAKGDIAICKMLLDS-GANIDYFG  198 (413)
T ss_pred             --------------------------HHHHHHHhcCC--CCCCCCCCC-CCHHHHHHHcCCHHHHHHHHhC-CCCCCcCC
Confidence                                      12222222222  2211  112 6888888888888888888888 88888888


Q ss_pred             CCC-CchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhccccc
Q 014730          349 QDG-HTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLV  398 (419)
Q Consensus       349 ~~g-~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~  398 (419)
                      ..| .||+|+|+.+++.+++++|+++|.........+..|.|||++++...
T Consensus       199 ~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        199 KNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhc
Confidence            554 57888888888888888888885333333445778888888876543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=279.55  Aligned_cols=292  Identities=13%  Similarity=0.088  Sum_probs=226.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCc--hHHHHHHHHhhCCCccccc-cCCCCChHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDE--ATCLLDKLATKVDPQTLAR-QDNHGHTAVI   77 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g--~~~~v~~Ll~~~~~~~~~~-~~~~g~t~L~   77 (419)
                      |++.|+.++|+.|+++ |.++|.+ |..| .||||+|+ .      .+  ..+++++|++.|  ++++. .|..|.||||
T Consensus        79 Aa~~g~~eiv~lLL~~-GAdin~~-d~~g-~TpLh~A~-~------~~~~~~e~v~lLl~~G--adin~~~d~~g~tpL~  146 (446)
T PHA02946         79 ASKINNNRIVAMLLTH-GADPNAC-DKQH-KTPLYYLS-G------TDDEVIERINLLVQYG--AKINNSVDEEGCGPLL  146 (446)
T ss_pred             HHHcCCHHHHHHHHHC-cCCCCCC-CCCC-CCHHHHHH-H------cCCchHHHHHHHHHcC--CCcccccCCCCCcHHH
Confidence            6789999999999987 8999999 9999 99999998 6      65  489999999999  88885 6889999997


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC--cH
Q 014730           78 FCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYG--HKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN--LY  153 (419)
Q Consensus        78 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~--~~  153 (419)
                       ||..|+.+++++|+++|++ ++.++..|.||||+|+..+  +.+++++|++.|++++. ++.+|.||||+|+..+  +.
T Consensus       147 -aa~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~-~d~~G~TpLH~Aa~~~~~~~  223 (446)
T PHA02946        147 -ACTDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK-PDHDGNTPLHIVCSKTVKNV  223 (446)
T ss_pred             -HHHCCChHHHHHHHhcccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCCcH
Confidence             6677999999999999999 7999999999999988754  57999999999999999 9999999999999986  88


Q ss_pred             HHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCC
Q 014730          154 DVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDT  233 (419)
Q Consensus       154 ~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (419)
                      +++++|+. |+++. .+|..|.||||+|+..+...      ...+.++....                            
T Consensus       224 ~iv~lLl~-gadin-~~d~~G~TpLh~A~~~~~~~------~~~~~Ll~~g~----------------------------  267 (446)
T PHA02946        224 DIINLLLP-STDVN-KQNKFGDSPLTLLIKTLSPA------HLINKLLSTSN----------------------------  267 (446)
T ss_pred             HHHHHHHc-CCCCC-CCCCCCCCHHHHHHHhCChH------HHHHHHHhCCC----------------------------
Confidence            99999985 88887 89999999999999864321      11222222110                            


Q ss_pred             CccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHH-HHHhhhhHhHHHHHHHHHhhhhhcccc
Q 014730          234 ENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVI-HDQKLTHMRTVEIVRIICEGVVWTNFQ  312 (419)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~  312 (419)
                                    ...+.+...+...+. ......+...   ....+.+++ +++..++..++++|   ++...  .  
T Consensus       268 --------------~~~~~~~~~a~~~~~-~~~~e~l~~~---g~~~~~TpLh~Aa~~g~~eivk~L---l~~~~--~--  322 (446)
T PHA02946        268 --------------VITDQTVNICIFYDR-DDVLEIINDK---GKQYDSTDFKMAVEVGSIRCVKYL---LDNDI--I--  322 (446)
T ss_pred             --------------CCCCcHHHHHHHcCc-hHHHHHHHHc---CcccCCCHHHHHHHcCCHHHHHHH---HHCCC--c--
Confidence                          000001111111111 1111111100   012244566 88888887666655   44432  1  


Q ss_pred             chhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          313 KSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       313 ~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                         + .||||+|+..|+.++|++|+.+ |++++.+ ..|.||||+|+++++.++++.|+...
T Consensus       323 ---~-~t~L~~A~~~~~~~~v~~Ll~~-ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~  378 (446)
T PHA02946        323 ---C-EDAMYYAVLSEYETMVDYLLFN-HFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHN  378 (446)
T ss_pred             ---c-ccHHHHHHHhCHHHHHHHHHHC-CCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcC
Confidence               2 7999999999999999999999 9999985 58999999999999999999999983

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=9.1e-35  Score=290.88  Aligned_cols=325  Identities=13%  Similarity=0.009  Sum_probs=220.0

Q ss_pred             CCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCch--HHHHHHHHhhCCCccccccCCCCChHHHHH--
Q 014730            4 KNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEA--TCLLDKLATKVDPQTLARQDNHGHTAVIFC--   79 (419)
Q Consensus         4 ~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~--~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A--   79 (419)
                      .++.++++.|+++ |.++|.+ |..| .||||+|+ .      .|+  .++|++|++.|  +++|.+|..|.||||.|  
T Consensus       189 ~~~~eIVklLLe~-GADVN~k-D~~G-~TPLH~Aa-~------~g~~~~eIVklLLe~G--ADVN~kD~~G~TPLh~Ai~  256 (764)
T PHA02716        189 YVDIDILEWLCNN-GVNVNLQ-NNHL-ITPLHTYL-I------TGNVCASVIKKIIELG--GDMDMKCVNGMSPIMTYII  256 (764)
T ss_pred             cCCHHHHHHHHHc-CCCCCCC-CCCC-CCHHHHHH-H------cCCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHH
Confidence            4678999999987 8999999 9999 99999999 8      885  58999999999  99999999999999975  


Q ss_pred             -----------------------------------HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHH--cCCHHHH
Q 014730           80 -----------------------------------AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAY--YGHKDTF  122 (419)
Q Consensus        80 -----------------------------------~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~~  122 (419)
                                                         +..|+.+++++|+++|++ ++.+|..|.||||+|+.  .++.+++
T Consensus       257 ~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIV  335 (764)
T PHA02716        257 NIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNISTDII  335 (764)
T ss_pred             hhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCchHH
Confidence                                               345788999999999999 79999999999999764  5689999


Q ss_pred             HHHHhcCCCCccccCCCCCcHHHHHHH--------------cCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH-hCCCC
Q 014730          123 QYLLEATNGVDIYRGNDGAMVLLFLIA--------------ANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLS-QKPYA  187 (419)
Q Consensus       123 ~~Ll~~g~~~~~~~~~~g~t~l~~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~-~~~~~  187 (419)
                      ++|++.|++++. ++..|.||||.|+.              .++.+++++|++.|+++. .+|..|.||||.++ .... 
T Consensus       336 klLLe~GADIN~-kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn-~kn~~G~TPLh~y~~~a~n-  412 (764)
T PHA02716        336 KLLHEYGNDLNE-PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT-AVNCLGYTPLTSYICTAQN-  412 (764)
T ss_pred             HHHHHcCCCCcc-CCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCC-CcCCCCCChHHHHHHHHHh-
Confidence            999999999999 99999999999865              368999999999999998 89999999999432 2110 


Q ss_pred             CCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHH
Q 014730          188 FASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKL  267 (419)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (419)
                         .......+.++...     +......+.  .+                   .............+.....+....  
T Consensus       413 ---~~~~dIvklLis~~-----~~~~~~~~~--~q-------------------~ll~~~d~~~~~lhh~~a~~~~~~--  461 (764)
T PHA02716        413 ---YMYYDIIDCLISDK-----VLNMVKHRI--LQ-------------------DLLIRVDDTPCIIHHIIAKYNIPT--  461 (764)
T ss_pred             ---cChHHHHHHHHhCc-----chhhhhhhh--hh-------------------hhhhccCcchhhHHHHHHhcCcch--
Confidence               01112222222110     000000000  00                   000000000000111111110000  


Q ss_pred             HHHHHHHhhhcCchhHHHHH-Hhh-hhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChH-----HHHHHHHHhc
Q 014730          268 NRMLWNALMRLAPSIKVIHD-QKL-THMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIP-----EVVNEFIMAY  340 (419)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~-----e~v~~Ll~~~  340 (419)
                                  ........ ... ....+..++. +.....  +.....+ .||||+|+..|+.     |++++|++. 
T Consensus       462 ------------~~~~~~~~~~~~~~~~~v~~~~i-i~~~nv--N~~D~~G-~TPLh~Aa~~g~~~~v~~e~~k~LL~~-  524 (764)
T PHA02716        462 ------------DLYTDEYEPYDSTKIHDVYHCAI-IERYNN--AVCETSG-MTPLHVSIISHTNANIVMDSFVYLLSI-  524 (764)
T ss_pred             ------------hhhhhhhhhccccccchhhHHHH-Hhhccc--cccCCCC-CCHHHHHHHcCCccchhHHHHHHHHhC-
Confidence                        00000000 000 0001111110 011111  2223334 8999999999987     556999999 


Q ss_pred             CCccccccCCCCchHHHHHhhchH-----HHHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          341 DSCSNWSNQDGHTIFDHAVLHRRE-----KVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       341 ~~d~~~~~~~g~t~Lh~Av~~~~~-----~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      |+|++.++..|+||||+|+++++.     ++|++|++.+   .++++.      .|++|...+..+
T Consensus       525 GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~g---a~~~~~------~l~~~~~~~~~~  581 (764)
T PHA02716        525 QYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKR---PNVDIV------IIFLDKCYANGK  581 (764)
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcC---CCcchH------HHHHHhhhhhhH
Confidence            999999999999999999999966     9999999993   334433      378888666554

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.1e-35  Score=289.18  Aligned_cols=243  Identities=14%  Similarity=0.103  Sum_probs=213.7

Q ss_pred             ChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCc-hHHHHHHHHhhCCCccccccCCCCChHHHHHH--Hc
Q 014730            6 DWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDE-ATCLLDKLATKVDPQTLARQDNHGHTAVIFCA--AK   82 (419)
Q Consensus         6 ~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~--~~   82 (419)
                      +.++++.|++. |.++|.+ +..| .||||+|+ .      .| +.+++++|++.|  ++++.+|..|.||||+|+  ..
T Consensus        62 ~~~iv~~Ll~~-Gadin~~-~~~g-~TpLh~A~-~------~~~~~~iv~lLl~~g--a~in~~~~~g~tpLh~a~~~~~  129 (471)
T PHA03095         62 VKDIVRLLLEA-GADVNAP-ERCG-FTPLHLYL-Y------NATTLDVIKLLIKAG--ADVNAKDKVGRTPLHVYLSGFN  129 (471)
T ss_pred             hHHHHHHHHHC-CCCCCCC-CCCC-CCHHHHHH-H------cCCcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHhhCCc
Confidence            89999999987 8999999 9999 99999999 8      89 699999999999  999999999999999999  55


Q ss_pred             CCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCccccCCCCCcHHHHHHHc--CcHHHHHH
Q 014730           83 GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYG--HKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAA--NLYDVALD  158 (419)
Q Consensus        83 g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~  158 (419)
                      ++.+++++|+++|++ ++.++..|.||||+|+..+  +.+++++|++.|++++. .+..|.||||.++..  +..++++.
T Consensus       130 ~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~-~d~~g~t~Lh~~~~~~~~~~~i~~~  207 (471)
T PHA03095        130 INPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRE  207 (471)
T ss_pred             CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHHCCCcHHHHHH
Confidence            689999999999999 7999999999999998875  68999999999999999 799999999999875  78899999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcccc
Q 014730          159 LLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTV  238 (419)
Q Consensus       159 Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (419)
                      |++.|+++. .+|..|.||||+|+..+....                                                 
T Consensus       208 Ll~~g~~~~-~~d~~g~tpLh~Aa~~~~~~~-------------------------------------------------  237 (471)
T PHA03095        208 LIRAGCDPA-ATDMLGNTPLHSMATGSSCKR-------------------------------------------------  237 (471)
T ss_pred             HHHcCCCCc-ccCCCCCCHHHHHHhcCCchH-------------------------------------------------
Confidence            999999988 899999999999998642100                                                 


Q ss_pred             ccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccc--hhh
Q 014730          239 TSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQK--SAQ  316 (419)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~  316 (419)
                                                                                ..+..+.+.+.  +++.  ..+
T Consensus       238 ----------------------------------------------------------~~v~~ll~~g~--din~~d~~g  257 (471)
T PHA03095        238 ----------------------------------------------------------SLVLPLLIAGI--SINARNRYG  257 (471)
T ss_pred             ----------------------------------------------------------HHHHHHHHcCC--CCCCcCCCC
Confidence                                                                      11122223332  3322  223


Q ss_pred             hhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          317 LSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       317 ~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                       .||||+|+..|+.++|++||+. |+|++..+..|+||||+|+.+++.+++++|++.+
T Consensus       258 -~TpLh~A~~~~~~~~v~~LL~~-gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        258 -QTPLHYAAVFNNPRACRRLIAL-GADINAVSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             -CCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence             8999999999999999999999 9999999999999999999999999999999994

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-34  Score=284.43  Aligned_cols=241  Identities=11%  Similarity=0.058  Sum_probs=200.7

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      ...+ .||||.|+ .      .|+.++|++|++.|  ++++.+|..|.||||+||..|+.+++++|++.+.. ...  ..
T Consensus        34 ~~~~-~tPLh~A~-~------~g~~e~vk~Ll~~g--advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~-~~~--~~  100 (477)
T PHA02878         34 SLIP-FIPLHQAV-E------ARNLDVVKSLLTRG--HNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINK-CSV--FY  100 (477)
T ss_pred             cccC-cchHHHHH-H------cCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhc-ccc--cc
Confidence            5567 99999999 9      99999999999999  99999999999999999999999999999998765 222  45


Q ss_pred             CchHHHHHHHcCCHH---------------------------------HHHHHHhcCCCCccccCCC-CCcHHHHHHHcC
Q 014730          106 GYLPVHNAAYYGHKD---------------------------------TFQYLLEATNGVDIYRGND-GAMVLLFLIAAN  151 (419)
Q Consensus       106 g~t~L~~A~~~g~~~---------------------------------~~~~Ll~~g~~~~~~~~~~-g~t~l~~a~~~~  151 (419)
                      +.+|++.|+..++.+                                 ++++|+++|++++. .+.. |.||||+|+..|
T Consensus       101 ~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~-~~~~~g~tpLh~A~~~~  179 (477)
T PHA02878        101 TLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINM-KDRHKGNTALHYATENK  179 (477)
T ss_pred             chhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCc-cCCCCCCCHHHHHHhCC
Confidence            788999998887654                                 56667777888887 7777 999999999999


Q ss_pred             cHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCC
Q 014730          152 LYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDG  231 (419)
Q Consensus       152 ~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (419)
                      +.+++++|++.|+++. ..|..|.||||.|+..+.                                             
T Consensus       180 ~~~iv~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~---------------------------------------------  213 (477)
T PHA02878        180 DQRLTELLLSYGANVN-IPDKTNNSPLHHAVKHYN---------------------------------------------  213 (477)
T ss_pred             CHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCC---------------------------------------------
Confidence            9999999999998887 788889999998887531                                             


Q ss_pred             CCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccc
Q 014730          232 DTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNF  311 (419)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  311 (419)
                                                                                      .++++.+++.+.  ++
T Consensus       214 ----------------------------------------------------------------~~iv~~Ll~~ga--~i  227 (477)
T PHA02878        214 ----------------------------------------------------------------KPIVHILLENGA--ST  227 (477)
T ss_pred             ----------------------------------------------------------------HHHHHHHHHcCC--CC
Confidence                                                                            133344444443  33


Q ss_pred             cchhhh-hHHHHHHHHh-ChHHHHHHHHHhcCCcccccc-CCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCC
Q 014730          312 QKSAQL-SGAMLSAAIL-GIPEVVNEFIMAYDSCSNWSN-QDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGN  388 (419)
Q Consensus       312 ~~~~~~-~t~L~~A~~~-g~~e~v~~Ll~~~~~d~~~~~-~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~  388 (419)
                      +..+.. .||||+|+.. ++.+++++|++. |++++..+ ..|+||||+|  .++.+++++|+++   +.+++.+|..|+
T Consensus       228 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~-gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~---gadin~~d~~g~  301 (477)
T PHA02878        228 DARDKCGNTPLHISVGYCKDYDILKLLLEH-GVDVNAKSYILGLTALHSS--IKSERKLKLLLEY---GADINSLNSYKL  301 (477)
T ss_pred             CCCCCCCCCHHHHHHHhcCCHHHHHHHHHc-CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHC---CCCCCCcCCCCC
Confidence            322211 8999999976 799999999999 99999998 5899999999  4577999999999   678899999999


Q ss_pred             ccchhccccc
Q 014730          389 NILHLAGRLV  398 (419)
Q Consensus       389 t~Lh~A~~~~  398 (419)
                      ||||+|++.+
T Consensus       302 TpL~~A~~~~  311 (477)
T PHA02878        302 TPLSSAVKQY  311 (477)
T ss_pred             CHHHHHHHHc
Confidence            9999999854

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.7e-34  Score=277.59  Aligned_cols=299  Identities=17%  Similarity=0.151  Sum_probs=233.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..+.++.|+.|++. |.+.+.. +..+ .+|+|+|+ .      .|..++++.|++.|  +++|..|.+|.||||.||
T Consensus        95 a~~~~~~~~i~~Lls~-gad~~~~-n~~~-~aplh~A~-~------~~~~s~L~~Ll~~~--~dvnl~de~~~TpLh~A~  162 (929)
T KOG0510|consen   95 AVEYNQGDKIQVLLSY-GADTPLR-NLNK-NAPLHLAA-D------SGNYSCLKLLLDYG--ADVNLEDENGFTPLHLAA  162 (929)
T ss_pred             HhhcchHHHHHHHHhc-CCCCChh-hhhc-cCchhhcc-c------cchHHHHHHHHHhc--CCccccccCCCchhhHHH
Confidence            4556778899999977 8888888 8899 99999999 8      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHh-----cCCCCccccCCCCCcHHHHHHHcCcHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE-----ATNGVDIYRGNDGAMVLLFLIAANLYDV  155 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~-----~g~~~~~~~~~~g~t~l~~a~~~~~~~~  155 (419)
                      ..++.|..+.|++.|++ +...|.+|++|+|.|++.|..++.+.++.     ++..++. .+..|.||||.|+..|+.++
T Consensus       163 ~~~~~E~~k~Li~~~a~-~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~-~~n~~~~pLhlAve~g~~e~  240 (929)
T KOG0510|consen  163 RKNKVEAKKELINKGAD-PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINF-DNNEKATPLHLAVEGGDIEM  240 (929)
T ss_pred             hcChHHHHHHHHhcCCC-CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccccc-ccCCCCcchhhhhhcCCHHH
Confidence            99999988999999999 78889999999999999999999999887     6777888 88889999999999999999


Q ss_pred             HHHHHhhCCCCC--------------cCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCccccccccc
Q 014730          156 ALDLLKLHPTIG--------------RDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSI  221 (419)
Q Consensus       156 ~~~Ll~~~~~~~--------------~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (419)
                      ++..++.|+...              +..|..|.||||+|++.+....       .+.+              .+.+.++
T Consensus       241 lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~s-------vd~L--------------l~~Ga~I  299 (929)
T KOG0510|consen  241 LKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPES-------VDNL--------------LGFGASI  299 (929)
T ss_pred             HHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhH-------HHHH--------------HHcCCcc
Confidence            999998765322              1368889999999998764432       1111              1111111


Q ss_pred             ccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHH
Q 014730          222 QSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRI  301 (419)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  301 (419)
                      ....                      -...++.|.++..|....+..                                 
T Consensus       300 ~~kn----------------------~d~~spLH~AA~yg~~ntv~r---------------------------------  324 (929)
T KOG0510|consen  300 NSKN----------------------KDEESPLHFAAIYGRINTVER---------------------------------  324 (929)
T ss_pred             cccC----------------------CCCCCchHHHHHcccHHHHHH---------------------------------
Confidence            1100                      011124455555554332222                                 


Q ss_pred             HHhhhhhccccchhhh-hHHHHHHHHhChHHHHHHHHHhcCCccc---cccCCCCchHHHHHhhchHHHHHHHhhccccc
Q 014730          302 ICEGVVWTNFQKSAQL-SGAMLSAAILGIPEVVNEFIMAYDSCSN---WSNQDGHTIFDHAVLHRREKVFNLIQGVNFTT  377 (419)
Q Consensus       302 l~~~~~~~~~~~~~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~---~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~  377 (419)
                      +++......++.++.. .||||.|+++|+.++++.||+. |+..+   ..|++|.||||.|++.|+...|++|+.+   +
T Consensus       325 LL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~---G  400 (929)
T KOG0510|consen  325 LLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH---G  400 (929)
T ss_pred             HHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-ChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc---C
Confidence            2221110023333322 8999999999999999999999 99887   4579999999999999999999999999   7


Q ss_pred             ceeeeccCCCCccchh
Q 014730          378 FLFSSRDKSGNNILHL  393 (419)
Q Consensus       378 ~~~~~~D~~G~t~Lh~  393 (419)
                      +.+...|+.|.+++++
T Consensus       401 a~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  401 ADIGVKNKKGKSAFDT  416 (929)
T ss_pred             Cceeeccccccccccc
Confidence            8888899999999994

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=4e-33  Score=280.77  Aligned_cols=359  Identities=10%  Similarity=0.028  Sum_probs=209.1

Q ss_pred             HHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHH--------
Q 014730            8 PGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFC--------   79 (419)
Q Consensus         8 ~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A--------   79 (419)
                      +.|+.|+.. +..++.+ |..| .||||+|| .   ++..|+.++|++|++.|  ++++.++..|.||||.|        
T Consensus        13 ~~~~~l~~~-~~~~~~~-d~~g-~t~Lh~a~-~---~~~~~~~~~v~~Ll~~g--a~v~~~~~~g~TpL~~Aa~~g~~~v   83 (661)
T PHA02917         13 DELKQMLRD-RDPNDTR-NQFK-NNALHAYL-F---NEHCNNVEVVKLLLDSG--TNPLHKNWRQLTPLEEYTNSRHVKV   83 (661)
T ss_pred             HHHHHHHhc-cCccccc-CCCC-CcHHHHHH-H---hhhcCcHHHHHHHHHCC--CCccccCCCCCCHHHHHHHcCChhH
Confidence            344555532 4444444 5555 55555543 3   00024455555555555  55555555555555544        


Q ss_pred             ---------------------------HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHH--HHcCCHHHHHHHHhcCC
Q 014730           80 ---------------------------AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNA--AYYGHKDTFQYLLEATN  130 (419)
Q Consensus        80 ---------------------------~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~g~~~~~~~Ll~~g~  130 (419)
                                                 +..|+.+++++|+++|++ ++.++..|.||||.+  +..|+.+++++|+++|+
T Consensus        84 ~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga  162 (661)
T PHA02917         84 NKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGC  162 (661)
T ss_pred             HHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCC
Confidence                                       445567889999999999 899999999999954  35789999999999999


Q ss_pred             CCccccC---CCC-----------CcHHHHHHH-----------cCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          131 GVDIYRG---NDG-----------AMVLLFLIA-----------ANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       131 ~~~~~~~---~~g-----------~t~l~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      +++. .+   ..|           .||||+|+.           .++.+++++|++.|+++. .+|..|.||||+|+..+
T Consensus       163 ~vn~-~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn-~~d~~G~TpLh~A~~~g  240 (661)
T PHA02917        163 SVLY-EDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS-SIDKNYCTALQYYIKSS  240 (661)
T ss_pred             Cccc-cccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc-cCCCCCCcHHHHHHHcC
Confidence            9976 43   234           599999986           468999999999999998 89999999999999876


Q ss_pred             CCCCCCCchhHHHHHHHhhhcccCCCCc---ccccccc-cccCCC-----C-CCCCCCCccccccccCCCC------CCC
Q 014730          186 YAFASGSRLGRLRRLIYNCWCQQSCIPL---EKERVPS-IQSNDD-----Q-NVDGDTENFTVTSKMHPKE------STP  249 (419)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-----~-~~~~~~~~~~~~~~~~~~~------~~~  249 (419)
                      ...     ..+.+.++..+  .......   .....+. +..+..     . ..+.... ...........      ...
T Consensus       241 ~~~-----~eivk~Li~g~--d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv-~~Li~~Ga~~~~~~~~~~~~  312 (661)
T PHA02917        241 HID-----IDIVKLLMKGI--DNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLV-KLFLENGKPHGIMCSIVPLW  312 (661)
T ss_pred             CCc-----HHHHHHHHhCC--cccccccccCcccccchHHHHHHHhhccccccchHHHH-HHHHhCCCCCceeEeeeccc
Confidence            421     22333333211  0000000   0000000 000000     0 0000000 00000000000      000


Q ss_pred             CCC----hhhHHH--------------HHhh--HHHHHHHHHHHHhhhcCc--hhHHHHHHhhhhHhHHHHHHHHHhh-h
Q 014730          250 FGS----TQQITA--------------IFGL--MFHKLNRMLWNALMRLAP--SIKVIHDQKLTHMRTVEIVRIICEG-V  306 (419)
Q Consensus       250 ~~~----~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~-~  306 (419)
                      .+.    ......              ..+.  ...+..++..+++....+  +.+.   .   .....+.++.|+.. +
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~---~---~~~~~~~i~~LL~~~g  386 (661)
T PHA02917        313 RNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFR---N---INIDSYTMKYLLKKEG  386 (661)
T ss_pred             ccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccch---h---hcCCHHHHHHHHHhcC
Confidence            111    011111              0111  112233333333332211  2110   0   11112344455542 2


Q ss_pred             hhcccc-c-hhhhhHHHHHHHHhC-----------------------hHHHHHHHHHhcCCccccccCCCCchHHHHHhh
Q 014730          307 VWTNFQ-K-SAQLSGAMLSAAILG-----------------------IPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLH  361 (419)
Q Consensus       307 ~~~~~~-~-~~~~~t~L~~A~~~g-----------------------~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~  361 (419)
                      .  +.+ . .++ .||||.|++.+                       ..++|+.|+.. |+|++.++..|+||||+|+..
T Consensus       387 a--~~~~~~~~G-~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~-GAdIN~kd~~G~TpLh~Aa~~  462 (661)
T PHA02917        387 G--DAVNHLDDG-EIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPY-LKDINMIDKRGETLLHKAVRY  462 (661)
T ss_pred             C--CccccCCCC-CChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHC-CCCCCCCCCCCcCHHHHHHHc
Confidence            2  211 1 123 99999987543                       36788999999 999999999999999999999


Q ss_pred             chHHHHHHHhhcccccceeeeccCCCCccchhccc-ccC
Q 014730          362 RREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGR-LVP  399 (419)
Q Consensus       362 ~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~-~~~  399 (419)
                      ++.+++++|++.   +.+++.+|..|.||||+|+. .+.
T Consensus       463 ~~~~~v~~Ll~~---GAdin~~d~~G~T~L~~A~~~~~~  498 (661)
T PHA02917        463 NKQSLVSLLLES---GSDVNIRSNNGYTCIAIAINESRN  498 (661)
T ss_pred             CCHHHHHHHHHC---cCCCCCCCCCCCCHHHHHHHhCCC
Confidence            999999999999   67889999999999999995 444

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-34  Score=231.68  Aligned_cols=166  Identities=22%  Similarity=0.201  Sum_probs=139.2

Q ss_pred             CCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcC
Q 014730            4 KNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKG   83 (419)
Q Consensus         4 ~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g   83 (419)
                      ......|+.+++..+..++.+.|.+| +||||+|| +      .|+.+++.+|++.- +..+|.+|..|+||||+||..|
T Consensus        13 ~~~~~kveel~~s~~kSL~~r~dqD~-Rt~LHwa~-S------~g~~eiv~fLlsq~-nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen   13 NCEEFKVEELIQSDPKSLNARDDQDG-RTPLHWAC-S------FGHVEIVYFLLSQP-NVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             hchHHHHHHHHhcChhhhhccccccC-Cceeeeee-e------cCchhHHHHHHhcC-CCCCCCccccCCchhhhhhhcC
Confidence            34456788888888878888844488 99999999 8      89999999998632 4778888888999999999999


Q ss_pred             CHHHHHHHHhc-CCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhh
Q 014730           84 NLKALKVLLKY-NPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKL  162 (419)
Q Consensus        84 ~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  162 (419)
                      +.++|+.|+.+ |++ +|..+..|.||||+|+..|+.+++++|+++|+.++. +|..|.||||.|+.-|..+++++|+..
T Consensus        84 ~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~-kD~~~qtplHRAAavGklkvie~Li~~  161 (226)
T KOG4412|consen   84 NDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRI-KDKQGQTPLHRAAAVGKLKVIEYLISQ  161 (226)
T ss_pred             cHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCCCCcc-cccccCchhHHHHhccchhhHHHHHhc
Confidence            99999999988 787 788888999999999999999999999999988888 899999999999999999999999988


Q ss_pred             CCCCCcCCCCCCCcHHHHH
Q 014730          163 HPTIGRDNIDSRRIVLNTL  181 (419)
Q Consensus       163 ~~~~~~~~~~~g~~~l~~a  181 (419)
                      |+.++ ..|.+|.||||.|
T Consensus       162 ~a~~n-~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  162 GAPLN-TQDKYGFTPLHHA  179 (226)
T ss_pred             CCCCC-cccccCccHHHHH
Confidence            87766 6777777777665

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-35  Score=232.02  Aligned_cols=206  Identities=22%  Similarity=0.283  Sum_probs=182.3

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCC-CCChHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCch
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDN-HGHTAVIFCAAKGNLKALKVLLKY-NPDLTNIRDSDGYL  108 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t  108 (419)
                      .++.+.+| .      .....-++-++++. |..++.++. +|.||||+||+.|+.+++.+|+.. +.. ++.+|..|+|
T Consensus         4 ~~~~~~~~-~------~~~~~kveel~~s~-~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~-~ddkDdaGWt   74 (226)
T KOG4412|consen    4 ASLGKAIC-E------NCEEFKVEELIQSD-PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVK-PDDKDDAGWT   74 (226)
T ss_pred             cchHHHHH-h------hchHHHHHHHHhcC-hhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCC-CCCccccCCc
Confidence            67888888 7      77777888888887 557777766 999999999999999999999964 444 7888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCC
Q 014730          109 PVHNAAYYGHKDTFQYLLEA-TNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYA  187 (419)
Q Consensus       109 ~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  187 (419)
                      |||.|+..|+.++|+-|+.+ |++++. .+..|.|+||+|+.+|..+++++|++.|+.+. .+|..|             
T Consensus        75 Plhia~s~g~~evVk~Ll~r~~advna-~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~-------------  139 (226)
T KOG4412|consen   75 PLHIAASNGNDEVVKELLNRSGADVNA-TTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQG-------------  139 (226)
T ss_pred             hhhhhhhcCcHHHHHHHhcCCCCCcce-ecCCCcceehhhhcCChhhHHHHHHhcCCCCc-cccccc-------------
Confidence            99999999999999999999 999999 99999999999999999999999999998765 444333             


Q ss_pred             CCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHH
Q 014730          188 FASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKL  267 (419)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (419)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (226)
T KOG4412|consen  140 --------------------------------------------------------------------------------  139 (226)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccc
Q 014730          268 NRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWS  347 (419)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~  347 (419)
                                                                        .||||.|+.-|+++++++|+.. ++.+|++
T Consensus       140 --------------------------------------------------qtplHRAAavGklkvie~Li~~-~a~~n~q  168 (226)
T KOG4412|consen  140 --------------------------------------------------QTPLHRAAAVGKLKVIEYLISQ-GAPLNTQ  168 (226)
T ss_pred             --------------------------------------------------CchhHHHHhccchhhHHHHHhc-CCCCCcc
Confidence                                                              4577777777899999999999 9999999


Q ss_pred             cCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcc
Q 014730          348 NQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAG  395 (419)
Q Consensus       348 ~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~  395 (419)
                      |+.|+||||.|.-.++.++..+|++.   +.+....|++| ||+-.|+
T Consensus       169 Dk~G~TpL~~al~e~~~d~a~lLV~~---gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  169 DKYGFTPLHHALAEGHPDVAVLLVRA---GADTDREDKEG-TALRIAC  212 (226)
T ss_pred             cccCccHHHHHHhccCchHHHHHHHh---ccceeeccccC-chHHHHH
Confidence            99999999999888899999999999   58889999999 9988776

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.1e-33  Score=273.92  Aligned_cols=166  Identities=12%  Similarity=0.062  Sum_probs=135.4

Q ss_pred             ChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCc--hHHHHHHHHhhCCCccccccCCCCChHHHHHHH--
Q 014730            6 DWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDE--ATCLLDKLATKVDPQTLARQDNHGHTAVIFCAA--   81 (419)
Q Consensus         6 ~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~--   81 (419)
                      +.++|+.|+++ |++++++ |..| .||||+|+ .      .+  +.++|++|++.|.+++++..+.-+.+|||.++.  
T Consensus        56 ~~eivklLLs~-GAdin~k-D~~G-~TPLh~Aa-~------~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~  125 (672)
T PHA02730         56 DIKIVRLLLSR-GVERLCR-NNEG-LTPLGVYS-K------RKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSD  125 (672)
T ss_pred             cHHHHHHHHhC-CCCCccc-CCCC-CChHHHHH-H------cCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhc
Confidence            58999999976 9999999 9999 99999998 7      66  799999999998445667788888899998887  


Q ss_pred             cCCHHHHHHHHh-cCCCCCccCCC-----CCchHHHHHHHcCCHHHHHHHHhcCCCCccc------cC-CCCCcHHHHHH
Q 014730           82 KGNLKALKVLLK-YNPDLTNIRDS-----DGYLPVHNAAYYGHKDTFQYLLEATNGVDIY------RG-NDGAMVLLFLI  148 (419)
Q Consensus        82 ~g~~~~~~~Ll~-~~~~~~~~~~~-----~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~------~~-~~g~t~l~~a~  148 (419)
                      .++.+++++|+. .+.+ ++....     .|.+|+++++..++.++|++|+++||+++-.      .+ ..+.|.||++.
T Consensus       126 n~~~~~vk~Li~~~~~~-~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~i  204 (672)
T PHA02730        126 NIDLRLLKYLIVDKRIR-PSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYI  204 (672)
T ss_pred             CCcHHHHHHHHHhcCCC-hhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHH
Confidence            889999999997 4455 454422     6889999999999999999999999999511      23 33445566443


Q ss_pred             ------HcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHh
Q 014730          149 ------AANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQ  183 (419)
Q Consensus       149 ------~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~  183 (419)
                            .++..+++++|+.+|+++. .+|..|.||||++..
T Consensus       205 l~~~~~~~n~~eiv~lLIs~GadIN-~kd~~G~TpLh~~~~  244 (672)
T PHA02730        205 LSHRESESLSKDVIKCLIDNNVSIH-GRDEGGSLPIQYYWS  244 (672)
T ss_pred             HhhhhhhccCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH
Confidence                  4578999999999999998 899999999997433

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-33  Score=276.99  Aligned_cols=260  Identities=14%  Similarity=0.088  Sum_probs=214.7

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |++.|+.++|+.|+++ |.++|.+ +..| .||||+|| .      .|+.+.++.|++.+  ...+.  ..+.+|++.|+
T Consensus        44 A~~~g~~e~vk~Ll~~-gadvn~~-d~~g-~TpLh~A~-~------~g~~~~v~~Ll~~~--~~~~~--~~~~~~l~~a~  109 (477)
T PHA02878         44 AVEARNLDVVKSLLTR-GHNVNQP-DHRD-LTPLHIIC-K------EPNKLGMKEMIRSI--NKCSV--FYTLVAIKDAF  109 (477)
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCCC-CCCC-CCHHHHHH-H------CccHhHHHHHHHHH--hcccc--ccchhhHHHHH
Confidence            6889999999999987 8899999 9999 99999999 9      99999999999988  43333  57789999998


Q ss_pred             HcCCHH---------------------------------HHHHHHhcCCCCCccCCCC-CchHHHHHHHcCCHHHHHHHH
Q 014730           81 AKGNLK---------------------------------ALKVLLKYNPDLTNIRDSD-GYLPVHNAAYYGHKDTFQYLL  126 (419)
Q Consensus        81 ~~g~~~---------------------------------~~~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~~~~Ll  126 (419)
                      ..++.+                                 ++++|+++|++ ++.++.. |.||||+|+..|+.+++++|+
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD-INMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence            777644                                 56667777888 7888888 999999999999999999999


Q ss_pred             hcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhc
Q 014730          127 EATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWC  206 (419)
Q Consensus       127 ~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  206 (419)
                      ++|++++. .+..|.||||.|+..++.+++++|++.|+++. .+|..|.||||+|+.....                   
T Consensus       189 ~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in-~~d~~g~TpLh~A~~~~~~-------------------  247 (477)
T PHA02878        189 SYGANVNI-PDKTNNSPLHHAVKHYNKPIVHILLENGASTD-ARDKCGNTPLHISVGYCKD-------------------  247 (477)
T ss_pred             HCCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHhcCC-------------------
Confidence            99999999 99999999999999999999999999999988 8999999999999864210                   


Q ss_pred             ccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHH
Q 014730          207 QQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIH  286 (419)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (419)
                                                                                                      
T Consensus       248 --------------------------------------------------------------------------------  247 (477)
T PHA02878        248 --------------------------------------------------------------------------------  247 (477)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhHhHHHHHHHHHhhhhhccccchhh--hhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhc-h
Q 014730          287 DQKLTHMRTVEIVRIICEGVVWTNFQKSAQ--LSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHR-R  363 (419)
Q Consensus       287 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~-~  363 (419)
                               .++++.+++.+.  +++..+.  -.||||.|  .++.+++++|++. |+|++..+..|+||||+|++.+ .
T Consensus       248 ---------~~iv~~Ll~~ga--dvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~-gadin~~d~~g~TpL~~A~~~~~~  313 (477)
T PHA02878        248 ---------YDILKLLLEHGV--DVNAKSYILGLTALHSS--IKSERKLKLLLEY-GADINSLNSYKLTPLSSAVKQYLC  313 (477)
T ss_pred             ---------HHHHHHHHHcCC--CCCccCCCCCCCHHHHH--ccCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHHcCc
Confidence                     134444455554  4443321  18999999  5788999999999 9999999999999999999854 5


Q ss_pred             HHHHHHHhhcc--cccceeeeccCCCCcc
Q 014730          364 EKVFNLIQGVN--FTTFLFSSRDKSGNNI  390 (419)
Q Consensus       364 ~~iv~~L~~~~--~~~~~~~~~D~~G~t~  390 (419)
                      .++.++|+...  .........+..|.++
T Consensus       314 ~~~~~~li~~~~~~~~~~~~~~~~~g~~~  342 (477)
T PHA02878        314 INIGRILISNICLLKRIKPDIKNSEGFID  342 (477)
T ss_pred             cchHHHHHHHHHHHHhccCcccCcHHHHH
Confidence            67888887764  1223445556566544

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.5e-33  Score=275.81  Aligned_cols=298  Identities=13%  Similarity=0.120  Sum_probs=207.4

Q ss_pred             ChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHc---
Q 014730            6 DWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAK---   82 (419)
Q Consensus         6 ~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~---   82 (419)
                      +.+.|+.|++. + +++..  ..| .|+++.+. .    ...++.++|++|+++|  +++|.+|..|.||||.|+..   
T Consensus        17 ~~~~v~~ll~~-~-~~~~~--~~~-~~~~~~yl-~----~~~~~~~iv~~Ll~~G--advn~~d~~g~TpL~~~~~n~~~   84 (489)
T PHA02798         17 KLSTVKLLIKS-C-NPNEI--VNE-YSIFQKYL-Q----RDSPSTDIVKLFINLG--ANVNGLDNEYSTPLCTILSNIKD   84 (489)
T ss_pred             cHHHHHHHHhc-C-Chhhh--ccc-chHHHHHH-h----CCCCCHHHHHHHHHCC--CCCCCCCCCCCChHHHHHHhHHh
Confidence            46789999975 3 23222  356 78877554 3    0145899999999999  99999999999999998764   


Q ss_pred             --CCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcC---CHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCc---HH
Q 014730           83 --GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYG---HKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANL---YD  154 (419)
Q Consensus        83 --g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~---~~  154 (419)
                        +..+++++|+++|++ ++.++..|.||||+|+..+   +.+++++|+++|++++. .+..|.||||+|+..++   .+
T Consensus        85 ~~~~~~iv~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~tpL~~a~~~~~~~~~~  162 (489)
T PHA02798         85 YKHMLDIVKILIENGAD-INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL-LDKDGFTMLQVYLQSNHHIDIE  162 (489)
T ss_pred             HHhHHHHHHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc-cCCCCCcHHHHHHHcCCcchHH
Confidence              678999999999999 8999999999999999875   78999999999999999 99999999999999887   99


Q ss_pred             HHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCC
Q 014730          155 VALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTE  234 (419)
Q Consensus       155 ~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (419)
                      ++++|++.|+++....+..|.||+|.+.......   ......+.++...              ..+....         
T Consensus       163 vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~---~~~~ivk~Li~~G--------------a~i~~~~---------  216 (489)
T PHA02798        163 IIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDR---IDADILKLFVDNG--------------FIINKEN---------  216 (489)
T ss_pred             HHHHHHHhCCCcccccCcCCCcHHHHHHHhcccc---CCHHHHHHHHHCC--------------CCcccCC---------
Confidence            9999999999987334567899999987653211   1222333332221              0000000         


Q ss_pred             ccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccch
Q 014730          235 NFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKS  314 (419)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  314 (419)
                                    ..+..    .....+.                  ..++.....+..++.++   ... .  +++..
T Consensus       217 --------------~~~~~----~~~~~l~------------------~l~~~~~~~~~~i~~~l---~~~-~--dvN~~  254 (489)
T PHA02798        217 --------------KSHKK----KFMEYLN------------------SLLYDNKRFKKNILDFI---FSY-I--DINQV  254 (489)
T ss_pred             --------------ccccc----hHHHHHH------------------HHHhhcccchHHHHHHH---Hhc-C--CCCCc
Confidence                          00000    0000000                  00011111222223332   232 2  34333


Q ss_pred             hhh-hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCc
Q 014730          315 AQL-SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNN  389 (419)
Q Consensus       315 ~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t  389 (419)
                      +.. .||||.|+.+|+.+++++||+. |+|++.++..|+||||+|+++++.++++.|+++   ..+++..+..++.
T Consensus       255 d~~G~TPL~~A~~~~~~~~v~~LL~~-GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~---~~~~~~i~~~~~~  326 (489)
T PHA02798        255 DELGFNPLYYSVSHNNRKIFEYLLQL-GGDINIITELGNTCLFTAFENESKFIFNSILNK---KPNKNTISYTYYK  326 (489)
T ss_pred             CcCCccHHHHHHHcCcHHHHHHHHHc-CCcccccCCCCCcHHHHHHHcCcHHHHHHHHcc---CCCHHHHHHHHHH
Confidence            222 8999999999999999999999 999999999999999999999999999999988   3344444444433

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=273.27  Aligned_cols=254  Identities=16%  Similarity=0.132  Sum_probs=207.0

Q ss_pred             CCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHc-
Q 014730            4 KNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAK-   82 (419)
Q Consensus         4 ~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~-   82 (419)
                      .++.++|+.|+++ |.++|.+ + .| .||||.|+ .--..+..++.+++++|++.|  +++|.+|..|.||||.|+.. 
T Consensus        47 ~~~~~iv~~Ll~~-GAdvn~~-~-~~-~tpL~~a~-~~~~~~~~~~~~iv~~Ll~~G--adin~~d~~g~tpL~~a~~~~  119 (494)
T PHA02989         47 DVKIKIVKLLIDN-GADVNYK-G-YI-ETPLCAVL-RNREITSNKIKKIVKLLLKFG--ADINLKTFNGVSPIVCFIYNS  119 (494)
T ss_pred             CCChHHHHHHHHc-CCCccCC-C-CC-CCcHHHHH-hccCcchhhHHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHhc
Confidence            3578999999988 8999887 5 67 89999998 511111135688999999999  99999999999999988754 


Q ss_pred             --CCHHHHHHHHhcCCCCC-ccCCCCCchHHHHHHHc--CCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC----cH
Q 014730           83 --GNLKALKVLLKYNPDLT-NIRDSDGYLPVHNAAYY--GHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN----LY  153 (419)
Q Consensus        83 --g~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~--g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~----~~  153 (419)
                        |+.+++++|+++|++ + +.++..|.||||+|+..  ++.+++++|+++|++++...+..|.||||.|+..+    +.
T Consensus       120 ~~~~~eiv~~Ll~~Gad-in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~  198 (494)
T PHA02989        120 NINNCDMLRFLLSKGIN-VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISI  198 (494)
T ss_pred             ccCcHHHHHHHHHCCCC-cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccH
Confidence              689999999999999 7 78899999999998764  68999999999999987733678999999998754    89


Q ss_pred             HHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCC
Q 014730          154 DVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDT  233 (419)
Q Consensus       154 ~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (419)
                      +++++|++.|+++. ..+..|.++++.+..........                                          
T Consensus       199 ~iv~~Ll~~Ga~vn-~~~~~~~t~l~~~~~~~~~~~~~------------------------------------------  235 (494)
T PHA02989        199 KVIKYLIKKGVNIE-TNNNGSESVLESFLDNNKILSKK------------------------------------------  235 (494)
T ss_pred             HHHHHHHhCCCCcc-ccCCccccHHHHHHHhchhhccc------------------------------------------
Confidence            99999999999987 78888999999877642111000                                          


Q ss_pred             CccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccc
Q 014730          234 ENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQK  313 (419)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  313 (419)
                                                                                .   .++++.+... .  +++.
T Consensus       236 ----------------------------------------------------------~---~~il~~l~~~-a--dvn~  251 (494)
T PHA02989        236 ----------------------------------------------------------E---FKVLNFILKY-I--KINK  251 (494)
T ss_pred             ----------------------------------------------------------c---hHHHHHHHhC-C--CCCC
Confidence                                                                      0   1122222222 2  3333


Q ss_pred             h--hhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          314 S--AQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       314 ~--~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      .  .+ .||||+|+..|+.++|++|++. |+|++.++..|+||||+|+.+++.++++.|++.+
T Consensus       252 ~d~~G-~TpL~~Aa~~~~~~~v~~LL~~-Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        252 KDKKG-FNPLLISAKVDNYEAFNYLLKL-GDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             CCCCC-CCHHHHHHHhcCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            2  23 8999999999999999999999 9999999999999999999999999999999984

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.4e-33  Score=287.28  Aligned_cols=379  Identities=17%  Similarity=0.125  Sum_probs=228.6

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..+..++++.++.+ |.++..+ |..| .||||.|+ .      .|+++++++++.+|  +.++..+..|.||+|.|+
T Consensus       216 a~~~nri~~~eLll~~-gadv~a~-d~~g-l~~lh~a~-~------~g~~~i~~~l~~~g--a~~~~~~vr~~tplh~AA  283 (1143)
T KOG4177|consen  216 ACKKNRIKVVELLLKH-GADVSAK-DESG-LTPLHVAA-F------MGHLDIVKLLLQHG--ASVNVSTVRGETPLHMAA  283 (1143)
T ss_pred             hccccccceeeeeeec-cCcCCcc-cccC-ccHHHHHH-h------ccchhHHHHHHhcc--cccCcccccccCcchhhh
Confidence            4555666666666655 7777777 7777 78888887 7      77788888887777  777777777778888887


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      +.+..++.++|++.|++ +..++....||+|.|...|..++++++++.|+.++. .+..|.||+|+++..++.++..++.
T Consensus       284 ~~~~~e~~~~ll~~ga~-~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~a-ar~~g~t~lHlaa~~~~~~~~~~l~  361 (1143)
T KOG4177|consen  284 RAGQVEVCKLLLQNGAD-VLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNA-ARTAGYTPLHLAAKEGQVEVAGALL  361 (1143)
T ss_pred             ccchhhhHhhhhccCcc-cccccccccChhhhhcccchHHHHHHHhhccCCccc-cCcCCcccccHhhhhhhHHHHHHhh
Confidence            77777777777777777 566666777777777777777777777777766666 6666666666666555555444444


Q ss_pred             hhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchh-----------HHHHHHHhhhc-ccCCCCcccccccccccCCCCC
Q 014730          161 KLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLG-----------RLRRLIYNCWC-QQSCIPLEKERVPSIQSNDDQN  228 (419)
Q Consensus       161 ~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  228 (419)
                      ..+.... ..+..|.+|+|.|+..+........+.           .+..++-.... ++.+...+.+...+....+...
T Consensus       362 ~~~~~~~-~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG  440 (1143)
T KOG4177|consen  362 EHGAQRR-QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLG  440 (1143)
T ss_pred             ccccccC-cccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcC
Confidence            4433332 344445555555544432211100000           00000000000 1111111111111100000000


Q ss_pred             C-----------CCCCCccccccccCCCCCCCCCC-hhhHHHHHhhHHHHHHHHHHHHh--hhcCchhHHH-HHHhhhhH
Q 014730          229 V-----------DGDTENFTVTSKMHPKESTPFGS-TQQITAIFGLMFHKLNRMLWNAL--MRLAPSIKVI-HDQKLTHM  293 (419)
Q Consensus       229 ~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~  293 (419)
                      .           ..............+...++.|. +.+.++..++.....-++.....  .....+.+.+ .+...++ 
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~-  519 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDT-  519 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhh-
Confidence            0           00000011111122222333333 45556666655444433332211  1222233444 2223333 


Q ss_pred             hHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          294 RTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       294 ~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                        +...+.+++.+.|.+.....+ .||||.||..|++++||+||++ |+|++.+++.|+||||.|+..|+.+++++|+++
T Consensus       520 --v~~~~~l~~~ga~v~~~~~r~-~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  520 --VKVAKILLEHGANVDLRTGRG-YTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH  595 (1143)
T ss_pred             --HHHHHHHhhcCCceehhcccc-cchHHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHHcChHHHHHHHHHc
Confidence              344555566666434433333 8999999999999999999999 999999999999999999999999999999999


Q ss_pred             ccccceeeeccCCCCccchhcccccCCCC
Q 014730          374 NFTTFLFSSRDKSGNNILHLAGRLVPSSE  402 (419)
Q Consensus       374 ~~~~~~~~~~D~~G~t~Lh~A~~~~~~~~  402 (419)
                         +.++|..|.+|.||||+|+++|..+.
T Consensus       596 ---GA~vna~d~~g~TpL~iA~~lg~~~~  621 (1143)
T KOG4177|consen  596 ---GASVNAADLDGFTPLHIAVRLGYLSV  621 (1143)
T ss_pred             ---CCCCCcccccCcchhHHHHHhcccch
Confidence               78899999999999999999999885

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.9e-32  Score=244.26  Aligned_cols=171  Identities=18%  Similarity=0.154  Sum_probs=157.3

Q ss_pred             CccCCChHHHHHHHHhCCcccccc----c---CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCC
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAK----I---VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGH   73 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~----~---~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~   73 (419)
                      |+++|+.++|++|+++.+.++...    .   .-+| .+||-.|+ .      .||+++||.|+++|  +++|.......
T Consensus        49 aaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Ieg-appLWaAs-a------AGHl~vVk~L~~~g--a~VN~tT~TNS  118 (615)
T KOG0508|consen   49 AARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEG-APPLWAAS-A------AGHLEVVKLLLRRG--ASVNDTTRTNS  118 (615)
T ss_pred             ehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCC-CchhhHHh-c------cCcHHHHHHHHHhc--CccccccccCC
Confidence            689999999999999766555332    0   3357 89999999 9      99999999999999  99998888888


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcH
Q 014730           74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLY  153 (419)
Q Consensus        74 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~  153 (419)
                      |||-.||.-|+++++++|+++|++ +++.|..|.|.||.||..|+.+|+++|++.|++++. ++..|+|+||.++..|+.
T Consensus       119 tPLraACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~-ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA-KSYKGNTALHDCAESGSV  196 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcch-hcccCchHHHhhhhcccH
Confidence            999999999999999999999999 899999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          154 DVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       154 ~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      +++++|+..|+.+.  +|..|.|||..|+..+
T Consensus       197 divq~Ll~~ga~i~--~d~~GmtPL~~Aa~tG  226 (615)
T KOG0508|consen  197 DIVQLLLKHGAKID--VDGHGMTPLLLAAVTG  226 (615)
T ss_pred             HHHHHHHhCCceee--ecCCCCchHHHHhhhc
Confidence            99999999999875  8888999999988766

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.5e-32  Score=244.56  Aligned_cols=149  Identities=17%  Similarity=0.143  Sum_probs=135.0

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.++++.|++. +.+++.+   +| .||||+|+ .      .|+.++++.|++.|  ++++.+|..|.||||+|+
T Consensus        37 Aa~~g~~eiv~~Ll~~-ga~~n~~---d~-~TpLh~Aa-~------~g~~eiV~lLL~~G--advn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         37 AIADNNVRLVCTLLNA-GALKNLL---EN-EFPLHQAA-T------LEDTKIVKILLFSG--MDDSQFDDKGNTALYYAV  102 (284)
T ss_pred             HHHcCCHHHHHHHHHC-cCCCcCC---CC-CCHHHHHH-H------CCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHH
Confidence            6789999999999988 6666655   57 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCC-chHHHHHHHcCCHHHHHHHHhcCCCCccccC-CCCCcHHHHHHHcCcHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDG-YLPVHNAAYYGHKDTFQYLLEATNGVDIYRG-NDGAMVLLFLIAANLYDVALD  158 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~  158 (419)
                      ..|+.+++++|+++|++ ++.++..| .||||+|+..|+.+++++|+++|++.   .+ ..|.||||+|+..|+.+++++
T Consensus       103 ~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~l  178 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMIL  178 (284)
T ss_pred             HcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHH
Confidence            99999999999999999 68888877 48999999999999999999997643   23 358999999999999999999


Q ss_pred             HHhhCCCCC
Q 014730          159 LLKLHPTIG  167 (419)
Q Consensus       159 Ll~~~~~~~  167 (419)
                      |++.|+++.
T Consensus       179 LL~~gAd~n  187 (284)
T PHA02791        179 LLDYMTSTN  187 (284)
T ss_pred             HHHCCCCCC
Confidence            999998765

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.2e-32  Score=262.04  Aligned_cols=213  Identities=14%  Similarity=0.087  Sum_probs=187.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC
Q 014730           72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN  151 (419)
Q Consensus        72 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~  151 (419)
                      .+++||.|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..+.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV-KYPDIESELHDAVEEG   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCcccHHHHHHHCC
Confidence            57899999999999999999999999 799999999999999999999999999999999988 8889999999999999


Q ss_pred             cHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCC
Q 014730          152 LYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDG  231 (419)
Q Consensus       152 ~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (419)
                      +.+++++|++.|+......+..|.||||+|+..+.                                             
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~---------------------------------------------  114 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKK---------------------------------------------  114 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCC---------------------------------------------
Confidence            99999999999987765677889999999998632                                             


Q ss_pred             CCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccc
Q 014730          232 DTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNF  311 (419)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  311 (419)
                                                                                      .++++.|++.+.  +.
T Consensus       115 ----------------------------------------------------------------~~iv~~Ll~~ga--d~  128 (413)
T PHA02875        115 ----------------------------------------------------------------LDIMKLLIARGA--DP  128 (413)
T ss_pred             ----------------------------------------------------------------HHHHHHHHhCCC--CC
Confidence                                                                            134444455544  33


Q ss_pred             cc--hhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCC-
Q 014730          312 QK--SAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGN-  388 (419)
Q Consensus       312 ~~--~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~-  388 (419)
                      +.  ..+ .||||.|+..|+.++|++|++. |++++.++..|+||||+|+..++.+++++|++.   +.+++..+..|. 
T Consensus       129 ~~~~~~g-~tpLh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~---ga~~n~~~~~~~~  203 (413)
T PHA02875        129 DIPNTDK-FSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS---GANIDYFGKNGCV  203 (413)
T ss_pred             CCCCCCC-CCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCcCCCCCCc
Confidence            22  223 8999999999999999999999 999999999999999999999999999999999   567788888875 


Q ss_pred             ccchhcccccCCCC
Q 014730          389 NILHLAGRLVPSSE  402 (419)
Q Consensus       389 t~Lh~A~~~~~~~~  402 (419)
                      ||||+|++.|..+.
T Consensus       204 t~l~~A~~~~~~~i  217 (413)
T PHA02875        204 AALCYAIENNKIDI  217 (413)
T ss_pred             hHHHHHHHcCCHHH
Confidence            89999999988763

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=3.6e-31  Score=269.81  Aligned_cols=378  Identities=16%  Similarity=0.103  Sum_probs=273.5

Q ss_pred             ccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHH
Q 014730            2 IEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAA   81 (419)
Q Consensus         2 ~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~   81 (419)
                      ...++.+.++.++.. ..+.+.. +..| .||+|.|| .      .+.++.++.++.+|  +++...|..|.||||.|+.
T Consensus       184 ~~~~~~~~~~ll~~~-~~~~~a~-~~~~-~tpl~~a~-~------~nri~~~eLll~~g--adv~a~d~~gl~~lh~a~~  251 (1143)
T KOG4177|consen  184 AHCGHARVAKLLLDK-KADPNAS-ALNG-FTPLHIAC-K------KNRIKVVELLLKHG--ADVSAKDESGLTPLHVAAF  251 (1143)
T ss_pred             hhcchHHHHhhhhcc-cCCcccc-ccCC-CCchhhhc-c------ccccceeeeeeecc--CcCCcccccCccHHHHHHh
Confidence            345666777777766 7788888 8999 99999999 9      99999999999999  9999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 014730           82 KGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLK  161 (419)
Q Consensus        82 ~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  161 (419)
                      .|+++++.+|+.+|+. ++..+..|.||+|.|++.+..++.++|+++|+++.. .+....||+|.|...|..+++++++.
T Consensus       252 ~g~~~i~~~l~~~ga~-~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~-~~~~~kt~l~~a~~~g~~~i~~~~l~  329 (1143)
T KOG4177|consen  252 MGHLDIVKLLLQHGAS-VNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLA-KARDDQTPLHIASRLGHEEIVHLLLQ  329 (1143)
T ss_pred             ccchhHHHHHHhcccc-cCcccccccCcchhhhccchhhhHhhhhccCccccc-ccccccChhhhhcccchHHHHHHHhh
Confidence            9999999999999999 899999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             hCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCc-----------hhHHHHHHHhhhc-ccCCCCcccccccccccCCCCCC
Q 014730          162 LHPTIGRDNIDSRRIVLNTLSQKPYAFASGSR-----------LGRLRRLIYNCWC-QQSCIPLEKERVPSIQSNDDQNV  229 (419)
Q Consensus       162 ~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  229 (419)
                      .++.+. ..+..|.+|+|+++...........           -..+..+.-.|-. .......+..++...+.......
T Consensus       330 ~~~~~~-aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gv  408 (1143)
T KOG4177|consen  330 AGATPN-AARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGV  408 (1143)
T ss_pred             ccCCcc-ccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCc
Confidence            999888 8899999999999886543200000           0000000011111 11111122222222111111000


Q ss_pred             -----CCCCCccccccccCC-----CCCCCCCC-hhhHHHHHhh-HHHHHHHHHHHHhh--hcCchhHHH-HHHhhhhHh
Q 014730          230 -----DGDTENFTVTSKMHP-----KESTPFGS-TQQITAIFGL-MFHKLNRMLWNALM--RLAPSIKVI-HDQKLTHMR  294 (419)
Q Consensus       230 -----~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~  294 (419)
                           ...+.++......+.     ......|. +.+.++..+. .....-.+....+.  ....+++.+ .+...++..
T Consensus       409 Tplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~  488 (1143)
T KOG4177|consen  409 TPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTE  488 (1143)
T ss_pred             ceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCch
Confidence                 000000000000000     00001111 4444555442 22222222222222  233467766 677788886


Q ss_pred             HHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          295 TVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       295 ~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      .+.++..   ...|.+.+...+ .+++|.|...+...+++.+++. |+++++++..|+||||.|+.+|+.++|+||+++ 
T Consensus       489 ~~~llle---~~~~~~~~~~~~-l~~lhla~~~~~v~~~~~l~~~-ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-  562 (1143)
T KOG4177|consen  489 VVQLLLE---GGANDNLDAKKG-LTPLHLAADEDTVKVAKILLEH-GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-  562 (1143)
T ss_pred             HHHHhhh---cCCccCccchhc-cchhhhhhhhhhHHHHHHHhhc-CCceehhcccccchHHHHHhcCCchHHHHhhhC-
Confidence            6666643   333224444444 8999999999999999999999 999999999999999999999999999999999 


Q ss_pred             cccceeeeccCCCCccchhcccccCCCC
Q 014730          375 FTTFLFSSRDKSGNNILHLAGRLVPSSE  402 (419)
Q Consensus       375 ~~~~~~~~~D~~G~t~Lh~A~~~~~~~~  402 (419)
                        +.+++..|+.|.||||.||..|...+
T Consensus       563 --gAdv~ak~~~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  563 --GADVNAKDKLGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             --CccccccCCCCCChhhHHHHcChHHH
Confidence              78999999999999999999997664

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.1e-30  Score=245.04  Aligned_cols=154  Identities=21%  Similarity=0.366  Sum_probs=98.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccC-CCCChHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD-NHGHTAVIFC   79 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L~~A   79 (419)
                      |++.|+++.|+.+++..+.+++.. |++| .|+||.|+ .      +++++++++|+++|  +++|... .-+.||||+|
T Consensus        51 A~q~G~l~~v~~lve~~g~~v~~~-D~~g-~tlLHWAA-i------NNrl~v~r~li~~g--advn~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   51 ATQYGELETVKELVESEGESVNNP-DREG-VTLLHWAA-I------NNRLDVARYLISHG--ADVNAIGGVLGSTPLHWA  119 (600)
T ss_pred             HhhcchHHHHHHHHhhcCcCCCCC-CcCC-ccceeHHH-H------cCcHHHHHHHHHcC--CCccccCCCCCCCcchHH
Confidence            455666666666666656666666 6666 66666666 6      66666666666666  6666665 4456666666


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHH
Q 014730           80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDL  159 (419)
Q Consensus        80 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  159 (419)
                      +++|+..+|++|+++|++ ++.+|.+|.||+|+|+++|+.-++-||+.+|++++. +|.+|+|||++|+.+|+...+..|
T Consensus       120 ar~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~-~D~~grTpLmwAaykg~~~~v~~L  197 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL-RDNNGRTPLMWAAYKGFALFVRRL  197 (600)
T ss_pred             HHcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC-cCCCCCCHHHHHHHhcccHHHHHH
Confidence            666666666666666666 566666666666666666666666666666666666 666666666666666665556666


Q ss_pred             HhhCCCCC
Q 014730          160 LKLHPTIG  167 (419)
Q Consensus       160 l~~~~~~~  167 (419)
                      ++-++.+.
T Consensus       198 L~f~a~~~  205 (600)
T KOG0509|consen  198 LKFGASLL  205 (600)
T ss_pred             HHhccccc
Confidence            65555544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=255.91  Aligned_cols=233  Identities=15%  Similarity=0.056  Sum_probs=182.0

Q ss_pred             hHHHHHHHHhhCCCccccccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCH----HH
Q 014730           49 ATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAK---GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHK----DT  121 (419)
Q Consensus        49 ~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~----~~  121 (419)
                      .++.+|.|+..|  ..++.+|.+|.||||+||..   |+.+++++|+++|++ ++.++..|.||||+|+..|+.    ++
T Consensus        11 ~~~~~~~l~~~~--~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~~~v~~~~   87 (661)
T PHA02917         11 ALDELKQMLRDR--DPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRHVKVNKDI   87 (661)
T ss_pred             HHHHHHHHHhcc--CcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCChhHHHHH
Confidence            367789999988  77788899999999998655   889999999999999 788999999999999999984    46


Q ss_pred             HHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHH
Q 014730          122 FQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLI  201 (419)
Q Consensus       122 ~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~  201 (419)
                      ++.|++.+...+. .+  ..++++.|+..++.+++++|++.|+++. .+|..|.||||.++.....     .        
T Consensus        88 ~~~Ll~~~~~~n~-~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~~~~-----~--------  150 (661)
T PHA02917         88 AMALLEATGYSNI-ND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVMTDDP-----V--------  150 (661)
T ss_pred             HHHHHhccCCCCC-CC--cchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHHccCC-----C--------
Confidence            7889887654555 33  2367888999999999999999999998 8999999999976543210     0        


Q ss_pred             HhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCch
Q 014730          202 YNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPS  281 (419)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (419)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (661)
T PHA02917        151 --------------------------------------------------------------------------------  150 (661)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHhhhhHhHHHHHHHHHhhhhhccccchh---------------hhhHHHHHHHH-----------hChHHHHHH
Q 014730          282 IKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSA---------------QLSGAMLSAAI-----------LGIPEVVNE  335 (419)
Q Consensus       282 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---------------~~~t~L~~A~~-----------~g~~e~v~~  335 (419)
                                    .++++.|++.+.  +++..+               ...||||.|+.           .|+.++|++
T Consensus       151 --------------~eivklLi~~Ga--~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~  214 (661)
T PHA02917        151 --------------PEIIDLFIENGC--SVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKC  214 (661)
T ss_pred             --------------HHHHHHHHHcCC--CccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHH
Confidence                          122233333332  222110               01599999986           568999999


Q ss_pred             HHHhcCCccccccCCCCchHHHHHhhchH--HHHHHHhhcccccceeeeccCCCCccchhccccc
Q 014730          336 FIMAYDSCSNWSNQDGHTIFDHAVLHRRE--KVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLV  398 (419)
Q Consensus       336 Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~--~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~  398 (419)
                      |++. |+|++..+..|+||||+|+.+++.  ++|++|++-..........|..|.||+|+|+.++
T Consensus       215 Li~~-Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~~~~~~~~~~~~a~yl~  278 (661)
T PHA02917        215 LINH-GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAYSYIDDLTCCTRGIMADYLN  278 (661)
T ss_pred             HHHC-CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcccccccccCcccccchHHHHHHH
Confidence            9999 999999999999999999999985  7999997531222223467889999999999654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=243.59  Aligned_cols=272  Identities=11%  Similarity=0.059  Sum_probs=198.5

Q ss_pred             CchHHHHHHHHhhCCCccccccCCCCChHHHHHH--HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHc-----CCH
Q 014730           47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA--AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYY-----GHK  119 (419)
Q Consensus        47 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-----g~~  119 (419)
                      .-..+.|+.|++.+   +++.. ..|.|+++.+.  ..++.+++++|+++|++ ++.++..|.||||.|+..     +..
T Consensus        15 ~~~~~~v~~ll~~~---~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpL~~~~~n~~~~~~~~   89 (489)
T PHA02798         15 NVKLSTVKLLIKSC---NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN-VNGLDNEYSTPLCTILSNIKDYKHML   89 (489)
T ss_pred             cccHHHHHHHHhcC---Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC-CCCCCCCCCChHHHHHHhHHhHHhHH
Confidence            44578999999876   23332 45677776444  45589999999999999 899999999999998864     678


Q ss_pred             HHHHHHHhcCCCCccccCCCCCcHHHHHHHcC---cHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhH
Q 014730          120 DTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN---LYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGR  196 (419)
Q Consensus       120 ~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~  196 (419)
                      +++++|+++|++++. .+..|.||||.|+..+   +.+++++|++.|+++. .+|..|.||||+|+..+..    .....
T Consensus        90 ~iv~~Ll~~GadiN~-~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~a~~~~~~----~~~~v  163 (489)
T PHA02798         90 DIVKILIENGADINK-KNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQVYLQSNHH----IDIEI  163 (489)
T ss_pred             HHHHHHHHCCCCCCC-CCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCc----chHHH
Confidence            999999999999999 9999999999999875   7899999999999998 8999999999999986431    11222


Q ss_pred             HHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhh
Q 014730          197 LRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALM  276 (419)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (419)
                      .+.++...              .++....                                                   
T Consensus       164 v~~Ll~~g--------------adin~~~---------------------------------------------------  178 (489)
T PHA02798        164 IKLLLEKG--------------VDINTHN---------------------------------------------------  178 (489)
T ss_pred             HHHHHHhC--------------CCccccc---------------------------------------------------
Confidence            23232221              0000000                                                   


Q ss_pred             hcCchhHHHHHHhh--hhHhHHHHHHHHHhhhhhccccchhhh-hHHHH-------HHHHhChHHHHHHHHHhcCCcccc
Q 014730          277 RLAPSIKVIHDQKL--THMRTVEIVRIICEGVVWTNFQKSAQL-SGAML-------SAAILGIPEVVNEFIMAYDSCSNW  346 (419)
Q Consensus       277 ~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~-~t~L~-------~A~~~g~~e~v~~Ll~~~~~d~~~  346 (419)
                       ...+.++++....  ......++++.+++.+.  +++..+.. .++++       .+...++.+++++|+ . ++|+|.
T Consensus       179 -~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga--~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~-~-~~dvN~  253 (489)
T PHA02798        179 -NKEKYDTLHCYFKYNIDRIDADILKLFVDNGF--IINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIF-S-YIDINQ  253 (489)
T ss_pred             -CcCCCcHHHHHHHhccccCCHHHHHHHHHCCC--CcccCCccccchHHHHHHHHHhhcccchHHHHHHHH-h-cCCCCC
Confidence             0011122211100  01112356666777765  44332211 34443       345567788888765 5 699999


Q ss_pred             ccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCCC
Q 014730          347 SNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSE  402 (419)
Q Consensus       347 ~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~~  402 (419)
                      +|..|+||||+|+.+++.+++++|++.   +.+++.+|..|+||||+|++.|....
T Consensus       254 ~d~~G~TPL~~A~~~~~~~~v~~LL~~---GAdin~~d~~G~TpL~~A~~~~~~~i  306 (489)
T PHA02798        254 VDELGFNPLYYSVSHNNRKIFEYLLQL---GGDINIITELGNTCLFTAFENESKFI  306 (489)
T ss_pred             cCcCCccHHHHHHHcCcHHHHHHHHHc---CCcccccCCCCCcHHHHHHHcCcHHH
Confidence            999999999999999999999999999   67899999999999999999988663

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.5e-28  Score=234.45  Aligned_cols=355  Identities=10%  Similarity=0.016  Sum_probs=211.6

Q ss_pred             HHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCch-HHHHHHHHhhCCCccccccCCCCChHHHH-HHHcCCHHH
Q 014730           10 VEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEA-TCLLDKLATKVDPQTLARQDNHGHTAVIF-CAAKGNLKA   87 (419)
Q Consensus        10 v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~-~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~   87 (419)
                      .+.|+++ |.++-.  ..+| .||||.-. -      ..+ ..-++.++.-+  ..++..+.+|..|+|+ |+..|+.|+
T Consensus        21 ~~~l~~~-g~~~~~--~~~~-~t~~~~~~-~------~~~~~~~~~~~~~~~--~~~~~~n~~~~~~~~~~~s~n~~lEl   87 (631)
T PHA02792         21 AQSLIES-GANPLY--EYDG-ETPLKAYV-T------KKNNNIKNDVVILLL--SSVDYKNINDFDIFEYLCSDNIDIEL   87 (631)
T ss_pred             HHHHHHc-CCCccc--ccCC-CccHHHHH-h------hhhhhHHHHHHHHHH--hCCCcCccCCccHHHHHHHhcccHHH
Confidence            4667766 444433  4566 78888776 3      322 33445566666  5667777777777776 446777788


Q ss_pred             HHHHHhcCCCCCccCCCCCchHHHHHHH-cCCHHHHHHHHhcCCCCc---------------------------------
Q 014730           88 LKVLLKYNPDLTNIRDSDGYLPVHNAAY-YGHKDTFQYLLEATNGVD---------------------------------  133 (419)
Q Consensus        88 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~~~~Ll~~g~~~~---------------------------------  133 (419)
                      +++|+++|++ ++.++..+.||+|+|+. .++.|++++|+++|+++.                                 
T Consensus        88 vk~LI~~GAd-vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (631)
T PHA02792         88 LKLLISKGLE-INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDY  166 (631)
T ss_pred             HHHHHHcCCC-cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhcccccccc
Confidence            8888888887 67777777777777754 578888888888887521                                 


Q ss_pred             ---cccCCCCCcHHHHHHHcC-------cHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHh
Q 014730          134 ---IYRGNDGAMVLLFLIAAN-------LYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYN  203 (419)
Q Consensus       134 ---~~~~~~g~t~l~~a~~~~-------~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  203 (419)
                         . .+..|.||||+|+.++       +.++++.|+.+|+++. .+|..|.||||+|+......     ..+.+.++..
T Consensus       167 ~i~~-~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-~~d~~g~t~l~~~~~~~~i~-----~ei~~~L~~~  239 (631)
T PHA02792        167 TTDY-DDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-YYTYREHTTLYYYVDKCDIK-----REIFDALFDS  239 (631)
T ss_pred             cccc-CCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-ccCCCCChHHHHHHHcccch-----HHHHHHHHhc
Confidence               2 5667999999999988       7999999999999887 78888999999998875111     1222222222


Q ss_pred             hhcc----cCCCCcccccccccccCCCCCCCCCCCcccccc-ccCCCCCCCCCChhhHHHHHhh----------------
Q 014730          204 CWCQ----QSCIPLEKERVPSIQSNDDQNVDGDTENFTVTS-KMHPKESTPFGSTQQITAIFGL----------------  262 (419)
Q Consensus       204 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------  262 (419)
                      +...    ......+..++..  ...+.+........+-.. ..-.....+.........+...                
T Consensus       240 ~~~~~~~~~~l~~y~~~~~~~--~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~  317 (631)
T PHA02792        240 NYSGNELMNILSNYLRKQYRN--KNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYH  317 (631)
T ss_pred             cccccchHhHHHHHHHHHhcc--CccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            1100    0000000000000  000000000000000000 0000000000011111111110                


Q ss_pred             ---HHHHHHHHHHHHhhhcCchhHHH-HHHhhhhHhHHHHHHHHHhhhhhccccchhhh---hHHHHHHHHhChH---HH
Q 014730          263 ---MFHKLNRMLWNALMRLAPSIKVI-HDQKLTHMRTVEIVRIICEGVVWTNFQKSAQL---SGAMLSAAILGIP---EV  332 (419)
Q Consensus       263 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~---~t~L~~A~~~g~~---e~  332 (419)
                         ...+..++..++........... .++..++.   ++++.|++.+.  +++..+..   .||||.|+.....   ++
T Consensus       318 ~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~---eIVelLIs~GA--DIN~kD~~g~~~TpLh~A~~n~~~~v~~I  392 (631)
T PHA02792        318 TVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDP---KVVEYILKNGN--VVVEDDDNIINIMPLFPTLSIHESDVLSI  392 (631)
T ss_pred             CccHHHHHHHHHCCCccccCCcchHHHHHHHcCCH---HHHHHHHHcCC--chhhhcCCCCChhHHHHHHHhccHhHHHH
Confidence               11112222222222111122222 33344444   55666677776  66544321   6999998877654   46


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhccc
Q 014730          333 VNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGR  396 (419)
Q Consensus       333 v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~  396 (419)
                      +++|++. |+|+|.++..|+||||+|+..++.+++++|+++   +.+++.+|..|+||||+|+.
T Consensus       393 lklLIs~-GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~---GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        393 LKLCKPY-IDDINKIDKHGRSILYYCIESHSVSLVEWLIDN---GADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHhc-CCccccccccCcchHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHH
Confidence            8889999 999999999999999999999999999999999   67889999999999999986

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=234.93  Aligned_cols=331  Identities=11%  Similarity=0.059  Sum_probs=213.4

Q ss_pred             HHHHHHHHhCCcccc-cccCCCCCccHHHHHHHhhcccCCCc---hHHHHHHHHhhCCCccccccCCCCChHHHHHHHcC
Q 014730            8 PGVEDFVTNHPDALT-AKIVEPGSKTIFHTIAELLVDDDSDE---ATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKG   83 (419)
Q Consensus         8 ~~v~~ll~~~~~~~~-~~~~~~g~~t~L~~A~~~~~~~~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g   83 (419)
                      ..++.+++. ..++| .+ |..| .||||+|+ .      .|   +.++|++|+++|  ++++.+|..|.||||+|+..+
T Consensus        21 ~~~~~~~~~-~~~in~~k-d~~G-~TaLh~A~-~------~~~~~~~eivklLLs~G--Adin~kD~~G~TPLh~Aa~~~   88 (672)
T PHA02730         21 KKIKLEIET-CHNLSKHI-DRRG-NNALHCYV-S------NKCDTDIKIVRLLLSRG--VERLCRNNEGLTPLGVYSKRK   88 (672)
T ss_pred             HHHHHHHHH-hcchhhhc-CCCC-CcHHHHHH-H------cCCcCcHHHHHHHHhCC--CCCcccCCCCCChHHHHHHcC
Confidence            346777766 44566 66 8899 99999999 8      76   599999999999  999999999999999999866


Q ss_pred             --CHHHHHHHHhcCCCC-CccCCCCCchHHHHHHH--cCCHHHHHHHHh-cCCCCccccC-----CCCCcHHHHHHHcCc
Q 014730           84 --NLKALKVLLKYNPDL-TNIRDSDGYLPVHNAAY--YGHKDTFQYLLE-ATNGVDIYRG-----NDGAMVLLFLIAANL  152 (419)
Q Consensus        84 --~~~~~~~Ll~~~~~~-~~~~~~~g~t~L~~A~~--~g~~~~~~~Ll~-~g~~~~~~~~-----~~g~t~l~~a~~~~~  152 (419)
                        +.+++++|++.|+.. ++..+..+.+|||.++.  .++.+++++|++ .|++++. ..     ..|.+|++++...++
T Consensus        89 ~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~-~~~~~~~~~~~~~~yl~~~~~~  167 (672)
T PHA02730         89 YVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSK-NTNYYIHCLGLVDIYVTTPNPR  167 (672)
T ss_pred             CCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhh-hhhhhccccchhhhhHhcCCCc
Confidence              799999999996541 35567679999998877  889999999997 6678776 32     378999999999999


Q ss_pred             HHHHHHHHhhCCCCC------cCCCCC-CCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCC
Q 014730          153 YDVALDLLKLHPTIG------RDNIDS-RRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSND  225 (419)
Q Consensus       153 ~~~~~~Ll~~~~~~~------~~~~~~-g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (419)
                      .+++++|++.|+++.      ...+.. +.+.||+....... .........+.++              +.+.++...+
T Consensus       168 ~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~-~~~n~~eiv~lLI--------------s~GadIN~kd  232 (672)
T PHA02730        168 PEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRE-SESLSKDVIKCLI--------------DNNVSIHGRD  232 (672)
T ss_pred             hHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhh-hhccCHHHHHHHH--------------HCCCCCCCCC
Confidence            999999999999873      113333 44566655544222 1222233333333              3332222111


Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCC-hhhH--HHHHhhHHHHHHHHHH------HHhhhcCchhHHH----HHHhhh-
Q 014730          226 DQNVDGDTENFTVTSKMHPKESTPFGS-TQQI--TAIFGLMFHKLNRMLW------NALMRLAPSIKVI----HDQKLT-  291 (419)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~-  291 (419)
                                             ..|. +.+.  +...++ .++...+..      .++....+....+    ....+. 
T Consensus       233 -----------------------~~G~TpLh~~~~~~~~~-~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (672)
T PHA02730        233 -----------------------EGGSLPIQYYWSCSTID-IEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRV  288 (672)
T ss_pred             -----------------------CCCCCHHHHHHHcCccc-HHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhc
Confidence                                   1121 3332  222222 233333332      1110011111111    000000 


Q ss_pred             --hHhHHHHHHHHHhhhhh-----c---cccchh-------------------hhhHHHHHHHHhC---hHHHHHHHHHh
Q 014730          292 --HMRTVEIVRIICEGVVW-----T---NFQKSA-------------------QLSGAMLSAAILG---IPEVVNEFIMA  339 (419)
Q Consensus       292 --~~~~~~~l~~l~~~~~~-----~---~~~~~~-------------------~~~t~L~~A~~~g---~~e~v~~Ll~~  339 (419)
                        +...+.+++.+++....     .   ..+...                   .....||.=.++|   +.++|+.|+++
T Consensus       289 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~  368 (672)
T PHA02730        289 TPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN  368 (672)
T ss_pred             ccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC
Confidence              01112333333332110     0   011110                   0023566555555   69999999999


Q ss_pred             cCCccccccCCCCchHHHHHhhch----HHHHHHHhhcccccceeeeccCCCCccchh
Q 014730          340 YDSCSNWSNQDGHTIFDHAVLHRR----EKVFNLIQGVNFTTFLFSSRDKSGNNILHL  393 (419)
Q Consensus       340 ~~~d~~~~~~~g~t~Lh~Av~~~~----~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~  393 (419)
                       |+++|.. ..|+||||+|+..++    .+++++|+++|. ..+++..|..|.||||.
T Consensus       369 -GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga-~~dIN~kd~~G~T~Lh~  423 (672)
T PHA02730        369 -GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNG-HMAINHVSNNGRLCMYG  423 (672)
T ss_pred             -CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCC-CccccccccCCCchHhH
Confidence             9999985 799999999998774    899999999941 13578999999999994

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=4e-29  Score=236.35  Aligned_cols=142  Identities=18%  Similarity=0.153  Sum_probs=129.3

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhh-CCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCch
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATK-VDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRD-SDGYL  108 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t  108 (419)
                      ...++.|+ .      .|.++-|+.|++. |  ..++..|..|.|+||+||.+++.+++++|+++|++ +|... .-+.|
T Consensus        45 ~~~~v~A~-q------~G~l~~v~~lve~~g--~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad-vn~~gG~l~st  114 (600)
T KOG0509|consen   45 LDDIVKAT-Q------YGELETVKELVESEG--ESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD-VNAIGGVLGST  114 (600)
T ss_pred             hhhhhhHh-h------cchHHHHHHHHhhcC--cCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC-ccccCCCCCCC
Confidence            45677777 7      9999999999999 7  88999999999999999999999999999999999 78877 67889


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhC
Q 014730          109 PVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       109 ~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                      |||+|+++|+..++++|+++||+++. +|..|.+|+|.|+..|+.-++-+|+.+++++. .+|.+|+|||++|+..
T Consensus       115 PLHWAar~G~~~vv~lLlqhGAdpt~-~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  115 PLHWAARNGHISVVDLLLQHGADPTL-KDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRTPLMWAAYK  188 (600)
T ss_pred             cchHHHHcCcHHHHHHHHHcCCCCce-ecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCCHHHHHHHh
Confidence            99999999999999999999999999 99999999999999999999999999998877 7888888888888765

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=1e-26  Score=226.61  Aligned_cols=330  Identities=10%  Similarity=-0.014  Sum_probs=196.9

Q ss_pred             HHHHHHhhCCCccccccCCCCChHHHHHHHcCCH-HHHHHHHhcCCCCCccCCCCCchHHHH-HHHcCCHHHHHHHHhcC
Q 014730           52 LLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNL-KALKVLLKYNPDLTNIRDSDGYLPVHN-AAYYGHKDTFQYLLEAT  129 (419)
Q Consensus        52 ~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~-~~~~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~~~Ll~~g  129 (419)
                      ..+.|++.|  +++-. ...|.||||.-.-+.+. .-++.++..+.. ++..+.+|.+|+|+ |+..|+.|++++|+++|
T Consensus        20 ~~~~l~~~g--~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~G   95 (631)
T PHA02792         20 SAQSLIESG--ANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLLSS-VDYKNINDFDIFEYLCSDNIDIELLKLLISKG   95 (631)
T ss_pred             HHHHHHHcC--CCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHHhC-CCcCccCCccHHHHHHHhcccHHHHHHHHHcC
Confidence            478999999  77665 57888999998654443 334555555555 67788889999997 67789999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHH-cCcHHHHHHHHhhCCCCC-----------------------------------cCCCCC
Q 014730          130 NGVDIYRGNDGAMVLLFLIA-ANLYDVALDLLKLHPTIG-----------------------------------RDNIDS  173 (419)
Q Consensus       130 ~~~~~~~~~~g~t~l~~a~~-~~~~~~~~~Ll~~~~~~~-----------------------------------~~~~~~  173 (419)
                      ++++. ++..|.+|+++|+. .++.|++++|++.|++++                                   +..+..
T Consensus        96 AdvN~-~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (631)
T PHA02792         96 LEINS-IKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRM  174 (631)
T ss_pred             CCccc-ccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCC
Confidence            99999 88889999999965 699999999999997632                                   136778


Q ss_pred             CCcHHHHHHhCCC-------CCCC------C-----CchhHHHHHHHhhhc---ccCCCCcccccccccccCCCCCCCCC
Q 014730          174 RRIVLNTLSQKPY-------AFAS------G-----SRLGRLRRLIYNCWC---QQSCIPLEKERVPSIQSNDDQNVDGD  232 (419)
Q Consensus       174 g~~~l~~a~~~~~-------~~~~------~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (419)
                      |+||||+++...+       ..+.      +     ........+.+.-.+   .......+.....+++  ...+.-..
T Consensus       175 g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~--~~~~~l~~  252 (631)
T PHA02792        175 GKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGN--ELMNILSN  252 (631)
T ss_pred             CCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhcccccc--chHhHHHH
Confidence            9999999988761       1100      0     000111122221111   1112222222110000  00000000


Q ss_pred             CCccccc------c----ccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHH-HHhhhhHhHHHHHHH
Q 014730          233 TENFTVT------S----KMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIH-DQKLTHMRTVEIVRI  301 (419)
Q Consensus       233 ~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~  301 (419)
                      +..+.-.      +    ..+..-..+.+...........  +.........    .+....+. .-........+.++.
T Consensus       253 y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~--~~~~~~~~~~----~~~~q~~l~~Yl~~~~v~ieiIK~  326 (631)
T PHA02792        253 YLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNN--IIISSILKRY----TDSIQDLLSEYVSYHTVYINVIKC  326 (631)
T ss_pred             HHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhh--hHHHHHHHHH----hHHHHHHHHHHHhcCCccHHHHHH
Confidence            0000000      0    0000000000000000000000  0000000000    01122220 000111234567777


Q ss_pred             HHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCC--CCchHHHHHhhchH---HHHHHHhhcccc
Q 014730          302 ICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQD--GHTIFDHAVLHRRE---KVFNLIQGVNFT  376 (419)
Q Consensus       302 l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~--g~t~Lh~Av~~~~~---~iv~~L~~~~~~  376 (419)
                      +++.+.  +...... .++++.|+.+|+.++|++|+++ |++++.++..  |.||||+|......   +++++|+++   
T Consensus       327 LId~Ga--~~~r~~~-~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~---  399 (631)
T PHA02792        327 MIDEGA--TLYRFKH-INKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY---  399 (631)
T ss_pred             HHHCCC--ccccCCc-chHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc---
Confidence            788876  4432222 6679999999999999999999 9999999855  57999998776554   468888998   


Q ss_pred             cceeeeccCCCCccchhcccccCCC
Q 014730          377 TFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       377 ~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +.+++.+|..|.||||+|++.+..+
T Consensus       400 GADIN~kD~~G~TPLh~Aa~~~n~e  424 (631)
T PHA02792        400 IDDINKIDKHGRSILYYCIESHSVS  424 (631)
T ss_pred             CCccccccccCcchHHHHHHcCCHH
Confidence            6788999999999999999887754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.7e-26  Score=202.26  Aligned_cols=167  Identities=14%  Similarity=0.106  Sum_probs=150.2

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCc--hHHHHHHHHhhCCCccccccC-CCCChHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDE--ATCLLDKLATKVDPQTLARQD-NHGHTAVI   77 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g--~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L~   77 (419)
                      |++.|+.+.|+.|++.    ++.+ +..| .||||+|+ .      .+  +.+++++|++.|  ++++.++ ..|.||||
T Consensus        28 A~~~~~~~~vk~Li~~----~n~~-~~~g-~TpLh~a~-~------~~~~~~eiv~~Ll~~g--advn~~~~~~g~TpLh   92 (209)
T PHA02859         28 YVEKDDIEGVKKWIKF----VNDC-NDLY-ETPIFSCL-E------KDKVNVEILKFLIENG--ADVNFKTRDNNLSALH   92 (209)
T ss_pred             HHHhCcHHHHHHHHHh----hhcc-CccC-CCHHHHHH-H------cCCCCHHHHHHHHHCC--CCCCccCCCCCCCHHH
Confidence            6789999999999975    4555 8899 99999999 6      55  899999999999  9999987 48999999


Q ss_pred             HHHHc---CCHHHHHHHHhcCCCCCccCCCCCchHHHHHHH--cCCHHHHHHHHhcCCCCccccCCCCCcHHHH-HHHcC
Q 014730           78 FCAAK---GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAY--YGHKDTFQYLLEATNGVDIYRGNDGAMVLLF-LIAAN  151 (419)
Q Consensus        78 ~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~-a~~~~  151 (419)
                      +|+..   ++.+++++|+++|++ ++.++..|.||||.|+.  .++.+++++|++.|++++. ++..|.||||. |...+
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~-~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc-ccCCCCcHHHHHHHhcC
Confidence            98753   579999999999999 89999999999999876  4689999999999999999 99999999996 56678


Q ss_pred             cHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          152 LYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       152 ~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      +.+++++|++.|+++. .+|..|.||+++|+...
T Consensus       171 ~~~iv~~Ll~~Gadi~-~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        171 DKKIFDFLTSLGIDIN-ETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhhh
Confidence            9999999999999988 89999999999998763

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.4e-26  Score=200.36  Aligned_cols=136  Identities=14%  Similarity=0.160  Sum_probs=91.7

Q ss_pred             CCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcC--CHHHHHHHHhcCCCCCccCC-
Q 014730           27 EPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKG--NLKALKVLLKYNPDLTNIRD-  103 (419)
Q Consensus        27 ~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~-  103 (419)
                      ..+ .||||.|+ .      .|+.+.|+.|+..+     +..|..|.||||+|+..+  +.+++++|+++|++ ++.++ 
T Consensus        19 ~~~-~~pL~~A~-~------~~~~~~vk~Li~~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-vn~~~~   84 (209)
T PHA02859         19 YRY-CNPLFYYV-E------KDDIEGVKKWIKFV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-VNFKTR   84 (209)
T ss_pred             hcc-CcHHHHHH-H------hCcHHHHHHHHHhh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-CCccCC
Confidence            345 67777777 7      77777777777543     456677777777777643  67777777777777 56665 


Q ss_pred             CCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccCCCCCcHHHHHHH--cCcHHHHHHHHhhCCCCCcCCCCCCCcHH
Q 014730          104 SDGYLPVHNAAYY---GHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIA--ANLYDVALDLLKLHPTIGRDNIDSRRIVL  178 (419)
Q Consensus       104 ~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l  178 (419)
                      ..|.||||+|+..   ++.+++++|+++|++++. .+..|.||||.|+.  .++.+++++|++.|+++. .+|..|.|||
T Consensus        85 ~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~-~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin-~~d~~g~t~L  162 (209)
T PHA02859         85 DNNLSALHHYLSFNKNVEPEILKILIDSGSSITE-EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL-NKDFDNNNIL  162 (209)
T ss_pred             CCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc-cccCCCCcHH
Confidence            3677777776543   367777777777777777 77777777777654  356777777777776655 3443333333

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.6e-26  Score=217.56  Aligned_cols=207  Identities=11%  Similarity=-0.026  Sum_probs=175.5

Q ss_pred             HHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCc------cCCCCCchHHHHHHH--cCCHHHHH
Q 014730           52 LLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTN------IRDSDGYLPVHNAAY--YGHKDTFQ  123 (419)
Q Consensus        52 ~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~------~~~~~g~t~L~~A~~--~g~~~~~~  123 (419)
                      +.++++++|  .++|.++.+|     +|+..+..+++++|+.+|++ ++      .++..++|+||+++.  +|+.++++
T Consensus        64 ~~~~~~~~~--~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~-~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~  135 (437)
T PHA02795         64 LYDYFRIHR--DNIDQYIVDR-----LFAYITYKDIISALVSKNYM-EDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVD  135 (437)
T ss_pred             HHHHHHHcC--cchhhhhhhh-----HHhhcchHHHHHHHHhcccc-cchhhhhhhccccccHHHHHHHHhcCCCHHHHH
Confidence            568999999  8888887777     89999999999999999998 56      677889999999999  89999999


Q ss_pred             HHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHh
Q 014730          124 YLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYN  203 (419)
Q Consensus       124 ~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  203 (419)
                      +|+++||+++. .  ++.||+|.|+..++.+++++|+.+|++..+    .+.+|++-+                      
T Consensus       136 ~LI~~GADIn~-~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n----~~~~~l~~~----------------------  186 (437)
T PHA02795        136 FMVDHGAVIYK-I--ECLNAYFRGICKKESSVVEFILNCGIPDEN----DVKLDLYKI----------------------  186 (437)
T ss_pred             HHHHCCCCCCC-C--CCCCHHHHHHHcCcHHHHHHHHhcCCcccc----cccchhhhh----------------------
Confidence            99999999977 4  448999999999999999999999975431    111222100                      


Q ss_pred             hhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhH
Q 014730          204 CWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIK  283 (419)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (419)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (437)
T PHA02795        187 --------------------------------------------------------------------------------  186 (437)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhch
Q 014730          284 VIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRR  363 (419)
Q Consensus       284 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~  363 (419)
                                            .         + .|++|.|+.+++.+++++|++. |+++|.++..|+||||+|+.+++
T Consensus       187 ----------------------~---------~-~t~l~~a~~~~~~eIve~LIs~-GADIN~kD~~G~TpLh~Aa~~g~  233 (437)
T PHA02795        187 ----------------------I---------Q-YTRGFLVDEPTVLEIYKLCIPY-IEDINQLDAGGRTLLYRAIYAGY  233 (437)
T ss_pred             ----------------------h---------c-cchhHHHHhcCHHHHHHHHHhC-cCCcCcCCCCCCCHHHHHHHcCC
Confidence                                  0         0 5799999999999999999999 99999999999999999999999


Q ss_pred             HHHHHHHhhcccccceeeeccCCCCccchhcccccCCCCCCCchHHHH
Q 014730          364 EKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQ  411 (419)
Q Consensus       364 ~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~~~~~~~~~~~  411 (419)
                      .+++++|+++   +.+++.+|..|.||||+|+..|+..++.+.-..+-
T Consensus       234 ~eiVelLL~~---GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIv  278 (437)
T PHA02795        234 IDLVSWLLEN---GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKIL  278 (437)
T ss_pred             HHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHH
Confidence            9999999999   67889999999999999999997543444333333

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.7e-25  Score=210.69  Aligned_cols=151  Identities=7%  Similarity=-0.011  Sum_probs=122.7

Q ss_pred             HHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCcccc------ccCCCCChHHHHHHH--c
Q 014730           11 EDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLA------RQDNHGHTAVIFCAA--K   82 (419)
Q Consensus        11 ~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~------~~~~~g~t~L~~A~~--~   82 (419)
                      ++++.+ |.++|.+ +.+|      +|+ .      .+..+++++|+++|  ++++      .++..++|+||+++.  .
T Consensus        66 ~~~~~~-~~~i~~~-~~~~------~~~-~------~~~k~~~~~l~s~~--~~~~~~~~~~~~~~~~~~~L~~~~~n~~  128 (437)
T PHA02795         66 DYFRIH-RDNIDQY-IVDR------LFA-Y------ITYKDIISALVSKN--YMEDIFSIIIKNCNSVQDLLLYYLSNAY  128 (437)
T ss_pred             HHHHHc-Ccchhhh-hhhh------HHh-h------cchHHHHHHHHhcc--cccchhhhhhhccccccHHHHHHHHhcC
Confidence            445544 7777776 5554      777 7      99999999999999  8877      788899999999998  9


Q ss_pred             CCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcccc-----CCCCCcHHHHHHHcCcHHHHH
Q 014730           83 GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYR-----GNDGAMVLLFLIAANLYDVAL  157 (419)
Q Consensus        83 g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-----~~~g~t~l~~a~~~~~~~~~~  157 (419)
                      |+.+++++|+++|++ ++..  ++.||||.|+..++.+++++|+++|++..-..     +..+.+++|.|...++.++++
T Consensus       129 n~~eiV~~LI~~GAD-In~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve  205 (437)
T PHA02795        129 VEIDIVDFMVDHGAV-IYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYK  205 (437)
T ss_pred             CCHHHHHHHHHCCCC-CCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHH
Confidence            999999999999999 6663  46899999999999999999999998542212     234789999999999999999


Q ss_pred             HHHhhCCCCCcCCCCCCCcHHHHHH
Q 014730          158 DLLKLHPTIGRDNIDSRRIVLNTLS  182 (419)
Q Consensus       158 ~Ll~~~~~~~~~~~~~g~~~l~~a~  182 (419)
                      +|++.|+++. .+|..|.||||+|+
T Consensus       206 ~LIs~GADIN-~kD~~G~TpLh~Aa  229 (437)
T PHA02795        206 LCIPYIEDIN-QLDAGGRTLLYRAI  229 (437)
T ss_pred             HHHhCcCCcC-cCCCCCCCHHHHHH
Confidence            9999999887 55555444444443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=3.8e-26  Score=207.83  Aligned_cols=155  Identities=18%  Similarity=0.273  Sum_probs=130.8

Q ss_pred             CccCCChHHHHHHHHhCC-ccc---ccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccc--------ccc
Q 014730            1 MIEKNDWPGVEDFVTNHP-DAL---TAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTL--------ARQ   68 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~-~~~---~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~--------~~~   68 (419)
                      |++.|.+..+..|+.... ..+   -.. +..| .|||.+|| +      +||.++|++|+++. .+++        +-.
T Consensus        11 aa~~g~l~~l~~ll~~~s~~ei~~l~~~-~~~g-~tPL~iaa-R------nGH~~vVeyLle~~-~a~~e~~GsV~FDge   80 (615)
T KOG0508|consen   11 AARDGKLQLLAKLLINSSNEEIISLIGE-VQNG-GTPLLIAA-R------NGHADVVEYLLEHC-RASPEQGGSVRFDGE   80 (615)
T ss_pred             HhhhhhHHHHHHHHhCCchHHHHHHhcc-ccCC-CCceeeeh-h------cCcHHHHHHHHHHh-cCCccCCceEEeCCc
Confidence            456777777776665422 111   111 4567 89999999 9      99999999999953 1332        223


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 014730           69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLI  148 (419)
Q Consensus        69 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~  148 (419)
                      ...|-+||-.|+..||+++|+.|+++|++ +|.......|||-.||.-|++++++||+++|+|++. .++.|.|.|++|+
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~-VN~tT~TNStPLraACfDG~leivKyLvE~gad~~I-anrhGhTcLmIa~  158 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGAS-VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEI-ANRHGHTCLMIAC  158 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCc-cccccccCCccHHHHHhcchhHHHHHHHHcCCCCcc-cccCCCeeEEeee
Confidence            45688999999999999999999999988 898888899999999999999999999999999999 9999999999999


Q ss_pred             HcCcHHHHHHHHhhCCCCC
Q 014730          149 AANLYDVALDLLKLHPTIG  167 (419)
Q Consensus       149 ~~~~~~~~~~Ll~~~~~~~  167 (419)
                      .+|+.+++++|++.|++++
T Consensus       159 ykGh~~I~qyLle~gADvn  177 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGADVN  177 (615)
T ss_pred             ccCchHHHHHHHHhCCCcc
Confidence            9999999999999999987

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1e-25  Score=185.66  Aligned_cols=228  Identities=16%  Similarity=0.104  Sum_probs=201.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |.+.|+.+.++..+.-.+..++.. +++| -++++.|+ -      .|+...+..++.++  ...|..+..+.+|+.+++
T Consensus        69 ~~~s~nsd~~v~s~~~~~~~~~~t-~p~g-~~~~~v~a-p------~~s~~k~sttltN~--~rgnevs~~p~s~~slsV  137 (296)
T KOG0502|consen   69 AVRSGNSDVAVQSAQLDPDAIDET-DPEG-WSALLVAA-P------CGSVDKVSTTLTNG--ARGNEVSLMPWSPLSLSV  137 (296)
T ss_pred             hhhcCCcHHHHHhhccCCCCCCCC-Cchh-hhhhhhcC-C------CCCcceeeeeeccc--ccCCccccccCChhhHHH
Confidence            346778888888887777777777 8899 99999999 8      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..-+.+.+..+.+..   +|..|..|.|||.+|+.+|+.++|++|++.|++++. ......++|.+|+..|..+++++|+
T Consensus       138 hql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~-lgk~resALsLAt~ggytdiV~lLL  213 (296)
T KOG0502|consen  138 HQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDA-LGKYRESALSLATRGGYTDIVELLL  213 (296)
T ss_pred             HHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhh-hhhhhhhhHhHHhcCChHHHHHHHH
Confidence            988888887777664   678899999999999999999999999999999999 8999999999999999999999999


Q ss_pred             hhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcccccc
Q 014730          161 KLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTS  240 (419)
Q Consensus       161 ~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (419)
                      +++.+++ ..|-+|                                                                  
T Consensus       214 ~r~vdVN-vyDwNG------------------------------------------------------------------  226 (296)
T KOG0502|consen  214 TREVDVN-VYDWNG------------------------------------------------------------------  226 (296)
T ss_pred             hcCCCcc-eeccCC------------------------------------------------------------------
Confidence            9998876 333333                                                                  


Q ss_pred             ccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHH
Q 014730          241 KMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGA  320 (419)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~  320 (419)
                                                                                                   -||
T Consensus       227 -----------------------------------------------------------------------------gTp  229 (296)
T KOG0502|consen  227 -----------------------------------------------------------------------------GTP  229 (296)
T ss_pred             -----------------------------------------------------------------------------Cce
Confidence                                                                                         356


Q ss_pred             HHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccch
Q 014730          321 MLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILH  392 (419)
Q Consensus       321 L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh  392 (419)
                      |.+|++-|+.+||+.||.. |++++..+..|++++..|+..|+. +|+.++++   ..+.+.+|+..+||||
T Consensus       230 LlyAvrgnhvkcve~Ll~s-GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~---h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  230 LLYAVRGNHVKCVESLLNS-GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK---HALKLCQDSEKRTPLH  296 (296)
T ss_pred             eeeeecCChHHHHHHHHhc-CCCcccccccCCcHHHHHHHhhhH-HHHHHHHH---HHHHHhhcccCCCCCC
Confidence            6677777889999999999 999999999999999999999988 88888888   6778899999999997

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=9.7e-25  Score=209.23  Aligned_cols=250  Identities=20%  Similarity=0.184  Sum_probs=205.1

Q ss_pred             hcccCCCchHHHHHHHHhhCC-----------CccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchH
Q 014730           41 LVDDDSDEATCLLDKLATKVD-----------PQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLP  109 (419)
Q Consensus        41 ~~~~~~~g~~~~v~~Ll~~~~-----------~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~  109 (419)
                      +++||+.|+.+.+..|++...           +...|.+|.+|.|.||.||..|+.+++++|+++.+- +...+..|.+|
T Consensus         7 l~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-ldl~d~kg~~p   85 (854)
T KOG0507|consen    7 LIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-LDLCDTKGILP   85 (854)
T ss_pred             HHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-hhhhhccCcce
Confidence            566777999999999998641           145888999999999999999999999999999887 68888999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCC
Q 014730          110 VHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFA  189 (419)
Q Consensus       110 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~  189 (419)
                      ||+|++.|+.+++++|+..+..+|. .+..|.||||.|+..|+.+++.+|+.+|++.. .+|..+.|++++|++.+..-+
T Consensus        86 lhlaaw~g~~e~vkmll~q~d~~na-~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr~~V  163 (854)
T KOG0507|consen   86 LHLAAWNGNLEIVKMLLLQTDILNA-VNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGRAEV  163 (854)
T ss_pred             EEehhhcCcchHHHHHHhcccCCCc-ccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhhhHH
Confidence            9999999999999999999988888 99999999999999999999999999999998 899999999999999865433


Q ss_pred             CCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHH
Q 014730          190 SGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNR  269 (419)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (419)
                      ....+..     ..|                                                                 
T Consensus       164 vq~ll~~-----~~~-----------------------------------------------------------------  173 (854)
T KOG0507|consen  164 VQMLLQK-----KFP-----------------------------------------------------------------  173 (854)
T ss_pred             HHHHhhh-----ccc-----------------------------------------------------------------
Confidence            1111100     000                                                                 


Q ss_pred             HHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccC
Q 014730          270 MLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQ  349 (419)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~  349 (419)
                                                +..+.. .. +.  .-+. .. .+|||.|+.+|+.++++.|+.. |.|+|..+.
T Consensus       174 --------------------------~~~~~~-~~-~~--~~~~-~~-~~plHlaakngh~~~~~~ll~a-g~din~~t~  220 (854)
T KOG0507|consen  174 --------------------------VQSSLR-VG-DI--KRPF-PA-IYPLHLAAKNGHVECMQALLEA-GFDINYTTE  220 (854)
T ss_pred             --------------------------hhhccc-CC-CC--CCCC-CC-cCCcchhhhcchHHHHHHHHhc-CCCcccccc
Confidence                                      000000 00 00  0000 01 7899999999999999999999 999999986


Q ss_pred             CCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCC
Q 014730          350 DGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPS  400 (419)
Q Consensus       350 ~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~  400 (419)
                      .| |+||-|..-|..++|.+|++.   ..+....|.+|.|+|.+--.+-+.
T Consensus       221 ~g-talheaalcgk~evvr~ll~~---gin~h~~n~~~qtaldil~d~~~~  267 (854)
T KOG0507|consen  221 DG-TALHEAALCGKAEVVRFLLEI---GINTHIKNQHGQTALDIIIDLQEN  267 (854)
T ss_pred             cc-hhhhhHhhcCcchhhhHHHhh---ccccccccccchHHHHHHHhcchh
Confidence            66 799999999999999999999   567788999999999987766543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=2e-23  Score=217.03  Aligned_cols=167  Identities=17%  Similarity=0.070  Sum_probs=128.4

Q ss_pred             CccCCChHHHHHHHHh-CCcccccccCCCCCccHHH-HHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHH
Q 014730            1 MIEKNDWPGVEDFVTN-HPDALTAKIVEPGSKTIFH-TIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIF   78 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~-~~~~~~~~~~~~g~~t~L~-~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~   78 (419)
                      ||+.||.+.|+.++++ .+.++|.. |..| .|||| .|+ .      .++.++++.|++.|  .    .+..|.||||.
T Consensus        24 A~~~g~~~~v~~lL~~~~~~~in~~-d~~G-~t~Lh~~A~-~------~~~~eiv~lLl~~g--~----~~~~G~T~Lh~   88 (743)
T TIGR00870        24 AAERGDLASVYRDLEEPKKLNINCP-DRLG-RSALFVAAI-E------NENLELTELLLNLS--C----RGAVGDTLLHA   88 (743)
T ss_pred             HHHcCCHHHHHHHhccccccCCCCc-Cccc-hhHHHHHHH-h------cChHHHHHHHHhCC--C----CCCcChHHHHH
Confidence            6788999999999866 35677777 8888 99999 777 8      88899999999888  4    67788999998


Q ss_pred             HHHcC---CHHHHHHHHhcCCC-----CCc----cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccC---------
Q 014730           79 CAAKG---NLKALKVLLKYNPD-----LTN----IRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRG---------  137 (419)
Q Consensus        79 A~~~g---~~~~~~~Ll~~~~~-----~~~----~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~---------  137 (419)
                      |+..+   ...++..+...+.+     .++    .....|.||||+|+..|+.+++++|+++|++++. +.         
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~-~~~~~~~~~~~  167 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPA-RACGDFFVKSQ  167 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-CcCCchhhcCC
Confidence            88722   22334444444322     011    1234688999999999999999999999998876 21         


Q ss_pred             -----CCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhC
Q 014730          138 -----NDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       138 -----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                           ..|.||||.|+..|+.+++++|++.|+++. .+|..|+||||+|+..
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin-~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL-TADSLGNTLLHLLVME  218 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh-hHhhhhhHHHHHHHhh
Confidence                 358899999999999999999999888876 7888899999988775

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=3.2e-23  Score=216.76  Aligned_cols=180  Identities=22%  Similarity=0.204  Sum_probs=149.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHH
Q 014730           68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFL  147 (419)
Q Consensus        68 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a  147 (419)
                      .+..+.++|+.||..|+.++++.|++.|++ ++..|..|.||||+|+..|+.+++++|+++|++++. ++..|.||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~-~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI-RDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC-cCCCCCCHHHHH
Confidence            344567888888888888888888888888 788888888888888888888888888888888888 888888888888


Q ss_pred             HHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCC
Q 014730          148 IAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQ  227 (419)
Q Consensus       148 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (419)
                      +..|+.+++++|+..++...                                                            
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~------------------------------------------------------------  618 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISD------------------------------------------------------------  618 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccC------------------------------------------------------------
Confidence            88888888888875442211                                                            


Q ss_pred             CCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhh
Q 014730          228 NVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVV  307 (419)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  307 (419)
                                                                                                      
T Consensus       619 --------------------------------------------------------------------------------  618 (823)
T PLN03192        619 --------------------------------------------------------------------------------  618 (823)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCC
Q 014730          308 WTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSG  387 (419)
Q Consensus       308 ~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G  387 (419)
                           ...+ .++||.|+.+|+.++++.|+++ |+|++.+|..|+||||+|+..++.+++++|+++   +.+++..|..|
T Consensus       619 -----~~~~-~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~---GAdv~~~~~~g  688 (823)
T PLN03192        619 -----PHAA-GDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN---GADVDKANTDD  688 (823)
T ss_pred             -----cccC-chHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc---CCCCCCCCCCC
Confidence                 0000 4699999999999999999999 999999999999999999999999999999999   67788889988


Q ss_pred             -CccchhcccccC
Q 014730          388 -NNILHLAGRLVP  399 (419)
Q Consensus       388 -~t~Lh~A~~~~~  399 (419)
                       .||++++.....
T Consensus       689 ~~t~~~l~~~~~~  701 (823)
T PLN03192        689 DFSPTELRELLQK  701 (823)
T ss_pred             CCCHHHHHHHHHH
Confidence             999988866543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=4.3e-23  Score=215.86  Aligned_cols=166  Identities=14%  Similarity=0.092  Sum_probs=153.6

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      ||..|+.+.++.|++. |.++|.+ |..| .||||+|+ .      .|+.++++.|+++|  ++++.+|.+|.||||.|+
T Consensus       532 Aa~~g~~~~l~~Ll~~-G~d~n~~-d~~G-~TpLh~Aa-~------~g~~~~v~~Ll~~g--adin~~d~~G~TpL~~A~  599 (823)
T PLN03192        532 VASTGNAALLEELLKA-KLDPDIG-DSKG-RTPLHIAA-S------KGYEDCVLVLLKHA--CNVHIRDANGNTALWNAI  599 (823)
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCCC-CCCC-CCHHHHHH-H------cChHHHHHHHHhcC--CCCCCcCCCCCCHHHHHH
Confidence            5788999999999977 8899999 9999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..|+.+++++|++.+.. .+  ...+.++||.|+..|+.+++++|+++|++++. .+..|.||||.|+..|+.+++++|+
T Consensus       600 ~~g~~~iv~~L~~~~~~-~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~-~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        600 SAKHHKIFRILYHFASI-SD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS-EDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HhCCHHHHHHHHhcCcc-cC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            99999999999988765 22  34577999999999999999999999999999 9999999999999999999999999


Q ss_pred             hhCCCCCcCCCCCC-CcHHHHHHh
Q 014730          161 KLHPTIGRDNIDSR-RIVLNTLSQ  183 (419)
Q Consensus       161 ~~~~~~~~~~~~~g-~~~l~~a~~  183 (419)
                      +.|+++. ..|..| .+|+.++..
T Consensus       676 ~~GAdv~-~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        676 MNGADVD-KANTDDDFSPTELREL  698 (823)
T ss_pred             HcCCCCC-CCCCCCCCCHHHHHHH
Confidence            9999988 778777 899887754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=3.8e-23  Score=215.01  Aligned_cols=230  Identities=16%  Similarity=0.120  Sum_probs=173.8

Q ss_pred             CCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHH-HHHHcCCHHHHHHHHhcCCCCCccCCCCC
Q 014730           28 PGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVI-FCAAKGNLKALKVLLKYNPDLTNIRDSDG  106 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g  106 (419)
                      .+ ...++.|+ .      .|+.+.++.+++.+.+.++|..|..|.|||| .|+.+++.+++++|++++.     .+..|
T Consensus        16 ~~-~~~~l~A~-~------~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G   82 (743)
T TIGR00870        16 DE-EKAFLPAA-E------RGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVG   82 (743)
T ss_pred             HH-HHHHHHHH-H------cCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcC
Confidence            45 78999999 9      9999999999999222889999999999999 8999999999999999986     46679


Q ss_pred             chHHHHHHHcC---CHHHHHHHHhcCCCCc------cc---cCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCC
Q 014730          107 YLPVHNAAYYG---HKDTFQYLLEATNGVD------IY---RGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSR  174 (419)
Q Consensus       107 ~t~L~~A~~~g---~~~~~~~Ll~~g~~~~------~~---~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  174 (419)
                      .||||.|+..+   ...++.++...+.+..      ..   ....|.||||+|+..|+.+++++|+++|++++ .++.. 
T Consensus        83 ~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~~-  160 (743)
T TIGR00870        83 DTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-ARACG-  160 (743)
T ss_pred             hHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcCC-
Confidence            99999999732   3345555555543211      10   23569999999999999999999999999876 22110 


Q ss_pred             CcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChh
Q 014730          175 RIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQ  254 (419)
Q Consensus       175 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (419)
                      ....    ..                                                                      
T Consensus       161 ~~~~----~~----------------------------------------------------------------------  166 (743)
T TIGR00870       161 DFFV----KS----------------------------------------------------------------------  166 (743)
T ss_pred             chhh----cC----------------------------------------------------------------------
Confidence            0000    00                                                                      


Q ss_pred             hHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHH
Q 014730          255 QITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVN  334 (419)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~  334 (419)
                                                                       ...   +. ...+ .||||.|+..|+.++++
T Consensus       167 -------------------------------------------------~~~---~~-~~~g-~tpL~~Aa~~~~~~iv~  192 (743)
T TIGR00870       167 -------------------------------------------------QGV---DS-FYHG-ESPLNAAACLGSPSIVA  192 (743)
T ss_pred             -------------------------------------------------CCC---Cc-cccc-ccHHHHHHHhCCHHHHH
Confidence                                                             000   00 0011 68999999999999999


Q ss_pred             HHHHhcCCccccccCCCCchHHHHHhhc---------hHHHHHHHhhccc----ccceeeeccCCCCccchhcccccCCC
Q 014730          335 EFIMAYDSCSNWSNQDGHTIFDHAVLHR---------REKVFNLIQGVNF----TTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       335 ~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~---------~~~iv~~L~~~~~----~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +|++. |+|++..|..|+||||+|+..+         ...+.+++.+.+.    .....+..|.+|.||||+|++.|..+
T Consensus       193 lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~  271 (743)
T TIGR00870       193 LLSED-PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIV  271 (743)
T ss_pred             HHhcC-CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCcc
Confidence            99999 9999999999999999999886         2345667766641    12233778999999999999999866

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.88  E-value=5.6e-23  Score=202.97  Aligned_cols=172  Identities=15%  Similarity=0.161  Sum_probs=102.5

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccc-cCCCCChHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLAR-QDNHGHTAVIFC   79 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~-~~~~g~t~L~~A   79 (419)
                      ||..|+-|.|..|+.+ |.++.++ |+.| .+||.+|+ .      .||...|+.|+.+.  ++++. .|..+.|+|-+|
T Consensus       764 acaggh~e~vellv~r-ganiehr-dkkg-f~plImaa-t------agh~tvV~~llk~h--a~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  764 ACAGGHREEVELLVVR-GANIEHR-DKKG-FVPLIMAA-T------AGHITVVQDLLKAH--ADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             cccCccHHHHHHHHHh-ccccccc-cccc-chhhhhhc-c------cCchHHHHHHHhhh--hhhhhhcccccCceEEEe
Confidence            4555666666666655 5566666 6666 66666666 6      66666666666665  55554 345566666666


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccc-cCCCCCcHHHHHHHcCcHHHHHH
Q 014730           80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY-RGNDGAMVLLFLIAANLYDVALD  158 (419)
Q Consensus        80 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~  158 (419)
                      |..|+.++|.+||..|++ -.-++.+..|||-+|...|..++++.|+..|..++.+ ....|..||.+|..+|+-..++.
T Consensus       832 csggr~~vvelLl~~gan-kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGAN-KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             cCCCcchHHHHHHHhhcc-ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHH
Confidence            666666666666666655 3455555666666666666666666666666655553 23446666666666666666666


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          159 LLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       159 Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      |++.|.+++....-+.+|+|.+|+..+
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqg  937 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQG  937 (2131)
T ss_pred             HhcccchhccccccccccceeeccccC
Confidence            666665555333344555555555443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.9e-21  Score=163.93  Aligned_cols=144  Identities=15%  Similarity=0.079  Sum_probs=126.8

Q ss_pred             CcccccccCCCCCccHHHHHHHhhcccCCCchH----HHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHH---HHH
Q 014730           18 PDALTAKIVEPGSKTIFHTIAELLVDDDSDEAT----CLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKA---LKV   90 (419)
Q Consensus        18 ~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~----~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---~~~   90 (419)
                      +.+++.. +.++ .++||.|| .      .|+.    +++++|++.|  ..++.+|..|.||||+|+..|+.+.   +++
T Consensus        10 ~~~~~~~-~~~~-~~~l~~a~-~------~g~~~~l~~~~~~l~~~g--~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~   78 (166)
T PHA02743         10 NLGAVEI-DEDE-QNTFLRIC-R------TGNIYELMEVAPFISGDG--HLLHRYDHHGRQCTHMVAWYDRANAVMKIEL   78 (166)
T ss_pred             chHHhhh-ccCC-CcHHHHHH-H------cCCHHHHHHHHHHHhhcc--hhhhccCCCCCcHHHHHHHhCccCHHHHHHH
Confidence            4556566 7788 89999999 8      8987    6677888888  8899999999999999999988654   899


Q ss_pred             HHhcCCCCCccCC-CCCchHHHHHHHcCCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCc
Q 014730           91 LLKYNPDLTNIRD-SDGYLPVHNAAYYGHKDTFQYLLE-ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGR  168 (419)
Q Consensus        91 Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  168 (419)
                      |+++|++ ++.++ ..|.||||+|+..|+.+++++|++ .|++++. .+..|.||||+|+..++.+++++|+..|+++. 
T Consensus        79 Ll~~Gad-in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~-~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~-  155 (166)
T PHA02743         79 LVNMGAD-INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA-INYQHETAYHIAYKMRDRRMMEILRANGAVCD-  155 (166)
T ss_pred             HHHcCCC-CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence            9999999 78888 589999999999999999999995 7999999 99999999999999999999999999999887 


Q ss_pred             CCCCCCC
Q 014730          169 DNIDSRR  175 (419)
Q Consensus       169 ~~~~~g~  175 (419)
                      .++..|.
T Consensus       156 ~~~~~~~  162 (166)
T PHA02743        156 DPLSIGL  162 (166)
T ss_pred             CcccCCc
Confidence            5555443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.87  E-value=6.8e-22  Score=189.83  Aligned_cols=248  Identities=22%  Similarity=0.225  Sum_probs=200.8

Q ss_pred             CccCCChHHHHHHHHhC------------CcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCcccccc
Q 014730            1 MIEKNDWPGVEDFVTNH------------PDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQ   68 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~------------~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~   68 (419)
                      |++.||.+.+..++++-            +...|.. |..| .|+||.|| .      +|+.++++.|++..  +-++..
T Consensus        10 a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~q-d~~g-fTalhha~-L------ng~~~is~llle~e--a~ldl~   78 (854)
T KOG0507|consen   10 ACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQ-DYSG-FTLLHHAV-L------NGQNQISKLLLDYE--ALLDLC   78 (854)
T ss_pred             hhhcccHHHHHHhccCCCCCCCCCCCCCCCcccccc-Cccc-hhHHHHHH-h------cCchHHHHHHhcch--hhhhhh
Confidence            67899999999999852            2345666 7789 99999999 9      99999999999998  889999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 014730           69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLI  148 (419)
Q Consensus        69 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~  148 (419)
                      |..|.+|||+|+-.|+.++++.|+.++.. +|..+.+|.||||.|+..|+.+++++|+.+|+++-. ++..+.|+|..|+
T Consensus        79 d~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i-~nns~~t~ldlA~  156 (854)
T KOG0507|consen   79 DTKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFI-RNNSKETVLDLAS  156 (854)
T ss_pred             hccCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCccc-cCcccccHHHHHH
Confidence            99999999999999999999999999955 899999999999999999999999999999999988 9999999999999


Q ss_pred             HcCcHHHHHHHHhhCCCCC-------cCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCccccccccc
Q 014730          149 AANLYDVALDLLKLHPTIG-------RDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSI  221 (419)
Q Consensus       149 ~~~~~~~~~~Ll~~~~~~~-------~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (419)
                      ..|..++++.|+...-...       ..++..+-+|+|+|+++                                     
T Consensus       157 qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakn-------------------------------------  199 (854)
T KOG0507|consen  157 RFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKN-------------------------------------  199 (854)
T ss_pred             HhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhc-------------------------------------
Confidence            9999999999998721111       01222333444444333                                     


Q ss_pred             ccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHH
Q 014730          222 QSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRI  301 (419)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  301 (419)
                                                                                           +|.   +.++.
T Consensus       200 ---------------------------------------------------------------------gh~---~~~~~  207 (854)
T KOG0507|consen  200 ---------------------------------------------------------------------GHV---ECMQA  207 (854)
T ss_pred             ---------------------------------------------------------------------chH---HHHHH
Confidence                                                                                 333   44445


Q ss_pred             HHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhh---chHHHHHHHhhc
Q 014730          302 ICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLH---RREKVFNLIQGV  373 (419)
Q Consensus       302 l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~---~~~~iv~~L~~~  373 (419)
                      +.+.+.  +++.....-|+||.|+..|..++|..|++. |.+...++..|+|+|.+-...   ...+++-++...
T Consensus       208 ll~ag~--din~~t~~gtalheaalcgk~evvr~ll~~-gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~~  279 (854)
T KOG0507|consen  208 LLEAGF--DINYTTEDGTALHEAALCGKAEVVRFLLEI-GINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKNF  279 (854)
T ss_pred             HHhcCC--CcccccccchhhhhHhhcCcchhhhHHHhh-ccccccccccchHHHHHHHhcchhhhhhhhhhhhcc
Confidence            556655  555444447999999999999999999999 999999999999999987643   344554444433

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=8.2e-21  Score=160.86  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=119.6

Q ss_pred             cccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHh------hCCCccccccCCCCChHHHHHHHcCC----HHHHHH
Q 014730           21 LTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLAT------KVDPQTLARQDNHGHTAVIFCAAKGN----LKALKV   90 (419)
Q Consensus        21 ~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~------~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~~~~   90 (419)
                      ++.+ +..| .||||+|+ .      .|+.++++.|+.      .|  ++++.+|..|.||||+|+..|+    .+++++
T Consensus        14 ~~~~-~~~g-~t~Lh~Aa-~------~g~~~~v~~l~~~~~~~~~g--a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~   82 (169)
T PHA02741         14 IAEK-NSEG-ENFFHEAA-R------CGCFDIIARFTPFIRGDCHA--AALNATDDAGQMCIHIAAEKHEAQLAAEIIDH   82 (169)
T ss_pred             hhcc-ccCC-CCHHHHHH-H------cCCHHHHHHHHHHhccchhh--hhhhccCCCCCcHHHHHHHcCChHHHHHHHHH
Confidence            4455 8889 99999999 9      999999999864      24  7789999999999999999999    589999


Q ss_pred             HHhcCCCCCccCCC-CCchHHHHHHHcCCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCC
Q 014730           91 LLKYNPDLTNIRDS-DGYLPVHNAAYYGHKDTFQYLLE-ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPT  165 (419)
Q Consensus        91 Ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  165 (419)
                      |+++|++ ++.++. .|.||||+|+..++.+++++|++ .|++++. .+..|.||||.|+..++.+++++|++.++.
T Consensus        83 Ll~~gad-in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~-~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         83 LIELGAD-INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF-CNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             HHHcCCC-CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999 788885 89999999999999999999998 5999999 999999999999999999999999987643

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=2.9e-21  Score=179.51  Aligned_cols=238  Identities=20%  Similarity=0.209  Sum_probs=168.0

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .-++--.+ .+.+||+.|..+-+..|+..|  +.++..+.+|.|+||-||.-.+.++|++|+++|++ +|..|..|+|||
T Consensus        35 ~v~f~~sa-~~l~A~~~~d~~ev~~ll~~g--a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-Vn~~d~e~wtPl  110 (527)
T KOG0505|consen   35 KVRFEDSA-VFLEACSRGDLEEVRKLLNRG--ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN-VNAQDNEGWTPL  110 (527)
T ss_pred             cccCCchH-HHHhccccccHHHHHHHhccC--CCccccCCccchhHHHHHhcccHHHHHHHHHhcCC-ccccccccCCcc
Confidence            33444444 455666688888888888888  77788888888888888888888888888888888 788888888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhh-CCCCCcCCCCCCCcHHHHHHhCCCCCC
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKL-HPTIGRDNIDSRRIVLNTLSQKPYAFA  189 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~~~l~~a~~~~~~~~  189 (419)
                      |.|+..|+..++++|+..|++... .+..|..|...+...-..+++..-... |.++.            .+-..     
T Consensus       111 haaascg~~~i~~~li~~gA~~~a-vNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~ie------------a~R~~-----  172 (527)
T KOG0505|consen  111 HAAASCGYLNIVEYLIQHGANLLA-VNSDGNMPYDLAEDEATLDVLETEMARQGIDIE------------AARKA-----  172 (527)
T ss_pred             hhhcccccHHHHHHHHHhhhhhhh-ccCCCCCccccccCcchhHHHHHHHHHhcccHH------------HHhhh-----
Confidence            888888888888888888887766 677777776655443333333332222 11110            00000     


Q ss_pred             CCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHH
Q 014730          190 SGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNR  269 (419)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (419)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (527)
T KOG0505|consen  173 --------------------------------------------------------------------------------  172 (527)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccC
Q 014730          270 MLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQ  349 (419)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~  349 (419)
                                           .....++-+......+...++....+ -|.||+|+.+|..++.+.|++. |.+++.+|.
T Consensus       173 ---------------------~e~~ml~D~~q~l~~G~~~d~~~~rG-~T~lHvAaa~Gy~e~~~lLl~a-g~~~~~~D~  229 (527)
T KOG0505|consen  173 ---------------------EEQTMLDDARQWLNAGAELDARHARG-ATALHVAAANGYTEVAALLLQA-GYSVNIKDY  229 (527)
T ss_pred             ---------------------hHHHHHHHHHHHHhcccccccccccc-chHHHHHHhhhHHHHHHHHHHh-ccCcccccc
Confidence                                 00000111111111111112222223 7999999999999999999999 999999999


Q ss_pred             CCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhccc
Q 014730          350 DGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGR  396 (419)
Q Consensus       350 ~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~  396 (419)
                      +|+||||.|+..++.++.++|+++   .+++++..+.|.|||-.|..
T Consensus       230 dgWtPlHAAA~Wg~~~~~elL~~~---ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  230 DGWTPLHAAAHWGQEDACELLVEH---GADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             cCCCcccHHHHhhhHhHHHHHHHh---hcccchhhhcCCCCccchhh
Confidence            999999999999999999999999   78899999999999998875

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=5.4e-21  Score=177.73  Aligned_cols=169  Identities=20%  Similarity=0.226  Sum_probs=157.7

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |++.|+++-|..|+.. +..+|.. +.+| .|+||-+| .      ..+.++|++|++.|  +++|..|+.|+||||.|+
T Consensus        47 A~~~~d~~ev~~ll~~-ga~~~~~-n~Dg-lTalhq~~-i------d~~~e~v~~l~e~g--a~Vn~~d~e~wtPlhaaa  114 (527)
T KOG0505|consen   47 ACSRGDLEEVRKLLNR-GASPNLC-NVDG-LTALHQAC-I------DDNLEMVKFLVENG--ANVNAQDNEGWTPLHAAA  114 (527)
T ss_pred             ccccccHHHHHHHhcc-CCCcccc-CCcc-chhHHHHH-h------cccHHHHHHHHHhc--CCccccccccCCcchhhc
Confidence            7889999999999977 6777888 9999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCC----------------------------------------------------------CccC
Q 014730           81 AKGNLKALKVLLKYNPDL----------------------------------------------------------TNIR  102 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~----------------------------------------------------------~~~~  102 (419)
                      .-|+..++.+|+.+|+++                                                          ..++
T Consensus       115 scg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~  194 (527)
T KOG0505|consen  115 SCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDAR  194 (527)
T ss_pred             ccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccc
Confidence            999999999999998876                                                          4444


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 014730          103 DSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLS  182 (419)
Q Consensus       103 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  182 (419)
                      +..|.|.||.|+..|-.++.++|++.|.+++. +|.+|+||||.|+.-|..++.++|+.+|+++. .....|.+|+.++.
T Consensus       195 ~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~-~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d-~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  195 HARGATALHVAAANGYTEVAALLLQAGYSVNI-KDYDGWTPLHAAAHWGQEDACELLVEHGADMD-AKTKMGETPLDVAD  272 (527)
T ss_pred             ccccchHHHHHHhhhHHHHHHHHHHhccCccc-ccccCCCcccHHHHhhhHhHHHHHHHhhcccc-hhhhcCCCCccchh
Confidence            55588999999999999999999999999999 99999999999999999999999999999998 88999999999876


Q ss_pred             h
Q 014730          183 Q  183 (419)
Q Consensus       183 ~  183 (419)
                      .
T Consensus       273 e  273 (527)
T KOG0505|consen  273 E  273 (527)
T ss_pred             h
Confidence            5

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.84  E-value=4.4e-21  Score=158.46  Aligned_cols=80  Identities=21%  Similarity=0.115  Sum_probs=76.6

Q ss_pred             hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccc
Q 014730          318 SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRL  397 (419)
Q Consensus       318 ~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~  397 (419)
                      .++|.+|++.|..++|+.||+. ++|+|.-|-+|-|||-||++.+|.++++.|+..   +.++++.|.+|++++.+|+++
T Consensus       194 esALsLAt~ggytdiV~lLL~r-~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s---GAd~t~e~dsGy~~mdlAVal  269 (296)
T KOG0502|consen  194 ESALSLATRGGYTDIVELLLTR-EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS---GADVTQEDDSGYWIMDLAVAL  269 (296)
T ss_pred             hhhHhHHhcCChHHHHHHHHhc-CCCcceeccCCCceeeeeecCChHHHHHHHHhc---CCCcccccccCCcHHHHHHHh
Confidence            6899999999999999999999 999999999999999999999999999999999   788899999999999999999


Q ss_pred             cCCC
Q 014730          398 VPSS  401 (419)
Q Consensus       398 ~~~~  401 (419)
                      |...
T Consensus       270 Gyr~  273 (296)
T KOG0502|consen  270 GYRI  273 (296)
T ss_pred             hhHH
Confidence            9853

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=1.1e-20  Score=167.21  Aligned_cols=153  Identities=18%  Similarity=0.175  Sum_probs=136.7

Q ss_pred             cccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHH-----cCCHHHHHHHHhcC
Q 014730           21 LTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAA-----KGNLKALKVLLKYN   95 (419)
Q Consensus        21 ~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~-----~g~~~~~~~Ll~~~   95 (419)
                      +|.- |.+| +|+||||+ .      ++++++|+.|++.| -++++.+|.-|+||++.|+.     ..+..+|..|+..|
T Consensus       261 VNla-DsNG-NTALHYsV-S------HaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg  330 (452)
T KOG0514|consen  261 VNLA-DSNG-NTALHYAV-S------HANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG  330 (452)
T ss_pred             hhhh-cCCC-Ceeeeeee-c------ccchHHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc
Confidence            4555 8899 99999999 9      99999999999999 68899999999999999984     35678899999987


Q ss_pred             CCCCccCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhh-CCCCCcCCCCC
Q 014730           96 PDLTNIRD-SDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKL-HPTIGRDNIDS  173 (419)
Q Consensus        96 ~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~  173 (419)
                      .  +|.+- .-|+|+|++|+..|+.++++.|+.+|+|+|. .|.+|.|+|+.|+..||.|++++|+.. +.+.. ..|..
T Consensus       331 n--VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNi-QDdDGSTALMCA~EHGhkEivklLLA~p~cd~s-LtD~D  406 (452)
T KOG0514|consen  331 D--VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNI-QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS-LTDVD  406 (452)
T ss_pred             C--cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCcc-ccCCccHHHhhhhhhChHHHHHHHhccCcccce-eecCC
Confidence            5  46654 4799999999999999999999999999999 999999999999999999999999986 44555 78999


Q ss_pred             CCcHHHHHHhCCCC
Q 014730          174 RRIVLNTLSQKPYA  187 (419)
Q Consensus       174 g~~~l~~a~~~~~~  187 (419)
                      |.|+|.+|...+..
T Consensus       407 gSTAl~IAleagh~  420 (452)
T KOG0514|consen  407 GSTALSIALEAGHR  420 (452)
T ss_pred             CchhhhhHHhcCch
Confidence            99999999887643

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.9e-19  Score=163.43  Aligned_cols=141  Identities=16%  Similarity=0.104  Sum_probs=121.6

Q ss_pred             cccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccC----CCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 014730           23 AKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD----NHGHTAVIFCAAKGNLKALKVLLKYNPDL   98 (419)
Q Consensus        23 ~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~----~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~   98 (419)
                      .+ |+.|..++||.|+ .      .|+.+++++|+++|  ++++.++    ..|.||||+|+..|+.+++++|+++|++ 
T Consensus        27 ~~-d~~~~~~lL~~A~-~------~~~~eivk~LL~~G--AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-   95 (300)
T PHA02884         27 KK-NKICIANILYSSI-K------FHYTDIIDAILKLG--ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-   95 (300)
T ss_pred             cc-CcCCCCHHHHHHH-H------cCCHHHHHHHHHCC--CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            44 7777345667777 8      89999999999999  8999874    5899999999999999999999999999 


Q ss_pred             CccC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcH
Q 014730           99 TNIR-DSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIV  177 (419)
Q Consensus        99 ~~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~  177 (419)
                      ++.+ +..|.||||.|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++..+...      ..+..+.+|
T Consensus        96 VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~-kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~  168 (300)
T PHA02884         96 VNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINI-QTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHP  168 (300)
T ss_pred             cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccCh
Confidence            7875 46799999999999999999999999999999 999999999999999888887665532      345667788


Q ss_pred             HHHH
Q 014730          178 LNTL  181 (419)
Q Consensus       178 l~~a  181 (419)
                      ++++
T Consensus       169 ~~~~  172 (300)
T PHA02884        169 KKIL  172 (300)
T ss_pred             hhhh
Confidence            8764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=7.8e-20  Score=152.68  Aligned_cols=132  Identities=17%  Similarity=0.178  Sum_probs=111.0

Q ss_pred             ccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCC-----CccccccCCCCChHHHHHHHcCCHH---HHHHHHh
Q 014730           22 TAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVD-----PQTLARQDNHGHTAVIFCAAKGNLK---ALKVLLK   93 (419)
Q Consensus        22 ~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~-----~~~~~~~~~~g~t~L~~A~~~g~~~---~~~~Ll~   93 (419)
                      +.+ |.+| .||||+|| .      .|+..  +.+...+.     +..++.+|..|.||||+|+..|+.+   ++++|++
T Consensus        11 ~~~-d~~g-~tpLh~A~-~------~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~   79 (154)
T PHA02736         11 SEP-DIEG-ENILHYLC-R------NGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME   79 (154)
T ss_pred             Hhc-CCCC-CCHHHHHH-H------hCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH
Confidence            445 8889 99999999 8      88843  33322220     0124457889999999999999874   6899999


Q ss_pred             cCCCCCccCC-CCCchHHHHHHHcCCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCC
Q 014730           94 YNPDLTNIRD-SDGYLPVHNAAYYGHKDTFQYLLE-ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTI  166 (419)
Q Consensus        94 ~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  166 (419)
                      +|++ ++.++ ..|.||||+|+..|+.+++++|++ .|++++. .+..|.||||+|+..|+.+++++|+..|++.
T Consensus        80 ~gad-in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~-~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         80 WGAD-INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI-LNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             cCCC-ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc-ccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999 78887 489999999999999999999998 4999999 9999999999999999999999999998764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=1.5e-19  Score=160.11  Aligned_cols=153  Identities=22%  Similarity=0.321  Sum_probs=138.2

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccC-CCCChHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD-NHGHTAVIFC   79 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L~~A   79 (419)
                      |+.++|+++|+.|++..-.++|.+ ++-| +||+++|+ . -.--...+..+|..|...|   ++|.+. ..|+|+|+.|
T Consensus       275 sVSHaNF~VV~~LLDSgvC~VD~q-NrAG-YtpiMLaA-L-A~lk~~~d~~vV~~LF~mg---nVNaKAsQ~gQTALMLA  347 (452)
T KOG0514|consen  275 AVSHANFDVVSILLDSGVCDVDQQ-NRAG-YTPVMLAA-L-AKLKQPADRTVVERLFKMG---DVNAKASQHGQTALMLA  347 (452)
T ss_pred             eecccchHHHHHHhccCccccccc-cccc-ccHHHHHH-H-HhhcchhhHHHHHHHHhcc---Ccchhhhhhcchhhhhh
Confidence            567899999999999988899999 9999 99999998 3 3333346688999999987   688766 4899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCcHHHHHHHcCcHHHHHH
Q 014730           80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA-TNGVDIYRGNDGAMVLLFLIAANLYDVALD  158 (419)
Q Consensus        80 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  158 (419)
                      +..|+.++|+.||..|++ +|++|.+|.|+|++|++.||.|++++|+.. +|+..+ .|.+|.|+|.+|...|+.||.-.
T Consensus       348 VSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sL-tD~DgSTAl~IAleagh~eIa~m  425 (452)
T KOG0514|consen  348 VSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISL-TDVDGSTALSIALEAGHREIAVM  425 (452)
T ss_pred             hhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCccccee-ecCCCchhhhhHHhcCchHHHHH
Confidence            999999999999999999 899999999999999999999999999976 688888 99999999999999999999988


Q ss_pred             HHhh
Q 014730          159 LLKL  162 (419)
Q Consensus       159 Ll~~  162 (419)
                      |..+
T Consensus       426 lYa~  429 (452)
T KOG0514|consen  426 LYAH  429 (452)
T ss_pred             HHHH
Confidence            8765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.7e-19  Score=152.13  Aligned_cols=127  Identities=12%  Similarity=0.056  Sum_probs=110.6

Q ss_pred             CccCCChHHHH----HHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHH---HHHHHHhhCCCccccccC-CCC
Q 014730            1 MIEKNDWPGVE----DFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATC---LLDKLATKVDPQTLARQD-NHG   72 (419)
Q Consensus         1 A~~~g~~~~v~----~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~---~v~~Ll~~~~~~~~~~~~-~~g   72 (419)
                      ||+.|+.+.++    .|++ .+..++.+ |..| +||||+|+ .      .|+.+   ++++|++.|  ++++.++ ..|
T Consensus        27 a~~~g~~~~l~~~~~~l~~-~g~~~~~~-d~~g-~t~Lh~Aa-~------~g~~~~~~~i~~Ll~~G--adin~~d~~~g   94 (166)
T PHA02743         27 ICRTGNIYELMEVAPFISG-DGHLLHRY-DHHG-RQCTHMVA-W------YDRANAVMKIELLVNMG--ADINARELGTG   94 (166)
T ss_pred             HHHcCCHHHHHHHHHHHhh-cchhhhcc-CCCC-CcHHHHHH-H------hCccCHHHHHHHHHHcC--CCCCCCCCCCC
Confidence            57788885444    4454 47788888 9999 99999999 8      88755   489999999  9999998 589


Q ss_pred             ChHHHHHHHcCCHHHHHHHHh-cCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCC
Q 014730           73 HTAVIFCAAKGNLKALKVLLK-YNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGA  141 (419)
Q Consensus        73 ~t~L~~A~~~g~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~  141 (419)
                      .||||+|+..|+.+++++|++ .+++ ++.++..|.||||+|+..++.+++++|+++|++++. ++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~-~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDD-PLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cccCCc
Confidence            999999999999999999995 7888 789999999999999999999999999999999988 666553

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.81  E-value=1.2e-20  Score=186.66  Aligned_cols=274  Identities=14%  Similarity=0.108  Sum_probs=231.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+-.|+..+|+.|++. ..+++..-|+.+ .|+|-+|| .      .|+.+.|+.||..|  ++-..++-..+|||-.|.
T Consensus       797 aatagh~tvV~~llk~-ha~veaQsdrtk-dt~lSlac-s------ggr~~vvelLl~~g--ankehrnvsDytPlsla~  865 (2131)
T KOG4369|consen  797 AATAGHITVVQDLLKA-HADVEAQSDRTK-DTMLSLAC-S------GGRTRVVELLLNAG--ANKEHRNVSDYTPLSLAR  865 (2131)
T ss_pred             hcccCchHHHHHHHhh-hhhhhhhccccc-CceEEEec-C------CCcchHHHHHHHhh--ccccccchhhcCchhhhc
Confidence            4567899999999988 566777658889 99999999 9      99999999999999  777778888999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCC--CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRD--SDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALD  158 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  158 (419)
                      ..|..++++.|+.+|.. ++.+.  .-|..||.+|..+|+.+.++.|++.|.++|.....+.+|+|-+|+..|..+++.+
T Consensus       866 Sggy~~iI~~llS~Gse-InSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~l  944 (2131)
T KOG4369|consen  866 SGGYTKIIHALLSSGSE-INSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFL  944 (2131)
T ss_pred             CcchHHHHHHHhhcccc-cccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHH
Confidence            99999999999999988 67664  4588999999999999999999999999998556788999999999999999999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcccc
Q 014730          159 LLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTV  238 (419)
Q Consensus       159 Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (419)
                      ||...+++. .+-+.|.|||.-++..+...+...                                              
T Consensus       945 LLa~~anve-hRaktgltplme~AsgGyvdvg~~----------------------------------------------  977 (2131)
T KOG4369|consen  945 LLAAQANVE-HRAKTGLTPLMEMASGGYVDVGNL----------------------------------------------  977 (2131)
T ss_pred             HHHHhhhhh-hhcccCCcccchhhcCCccccchh----------------------------------------------
Confidence            999999887 899999999999888765433110                                              


Q ss_pred             ccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhcccc---chh
Q 014730          239 TSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQ---KSA  315 (419)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~  315 (419)
                                                                                     |+..+.  +++   ...
T Consensus       978 ---------------------------------------------------------------li~~ga--d~nasPvp~  992 (2131)
T KOG4369|consen  978 ---------------------------------------------------------------LIAAGA--DTNASPVPN  992 (2131)
T ss_pred             ---------------------------------------------------------------hhhccc--ccccCCCCC
Confidence                                                                           011111  111   112


Q ss_pred             hhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcc
Q 014730          316 QLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAG  395 (419)
Q Consensus       316 ~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~  395 (419)
                      .+.|+|-+++..|+...|..|++. .+.+...+.+|.|+|..|+..++...+..|++.   ..+.+++|+.-++++.-|.
T Consensus       993 T~dtalti~a~kGh~kfv~~lln~-~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~---~ad~d~qdnr~~S~~maaf 1068 (2131)
T KOG4369|consen  993 TWDTALTIPANKGHTKFVPKLLNG-DATVRVPNKKGCTVLWLASAGGALSSCPILVSS---VADADQQDNRTNSRTMAAF 1068 (2131)
T ss_pred             cCCccceeecCCCchhhhHHhhCC-ccceecccCCCCcccchhccCCccccchHHhhc---ccChhhhhcccccccHHHH
Confidence            236888888999999999999988 888888888999999999999999999999998   6778889999999999888


Q ss_pred             cccCCCC
Q 014730          396 RLVPSSE  402 (419)
Q Consensus       396 ~~~~~~~  402 (419)
                      |.|+-.+
T Consensus      1069 RKgh~~i 1075 (2131)
T KOG4369|consen 1069 RKGHFAI 1075 (2131)
T ss_pred             Hhchhhe
Confidence            8888664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=1.6e-18  Score=157.51  Aligned_cols=143  Identities=15%  Similarity=0.051  Sum_probs=123.4

Q ss_pred             CccCCChHHHHHHHHhCCccccccc---CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccC-CCCChHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKI---VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD-NHGHTAV   76 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~---~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L   76 (419)
                      |++.|+.++++.|++. |.++|.+.   +..| .||||+|+ .      .|+.+++++|+++|  ++++.++ ..|.|||
T Consensus        40 A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g-~TpLh~Aa-~------~~~~eivklLL~~G--ADVN~~~~~~g~TpL  108 (300)
T PHA02884         40 SIKFHYTDIIDAILKL-GADPEAPFPLSENSK-TNPLIYAI-D------CDNDDAAKLLIRYG--ADVNRYAEEAKITPL  108 (300)
T ss_pred             HHHcCCHHHHHHHHHC-CCCccccCcccCCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCcCcccCCCCCCHH
Confidence            5678999999999988 88998861   2478 99999999 9      99999999999999  9999864 5899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHH
Q 014730           77 IFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVA  156 (419)
Q Consensus        77 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~  156 (419)
                      |.|+..|+.+++++|+++|++ ++.++..|.||||+|+..++.+++..+...+      .+..+.+|++.+   ++.+++
T Consensus       109 h~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        109 YISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICDNE------ISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcCCc------ccccccChhhhh---ccHHHH
Confidence            999999999999999999999 7999999999999999999998886665332      345667777764   468999


Q ss_pred             HHHHhhCC
Q 014730          157 LDLLKLHP  164 (419)
Q Consensus       157 ~~Ll~~~~  164 (419)
                      ++|+.++.
T Consensus       179 ~~Lish~v  186 (300)
T PHA02884        179 KILVSHFI  186 (300)
T ss_pred             HHHHHHHH
Confidence            99998865

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=1.2e-18  Score=138.83  Aligned_cols=142  Identities=15%  Similarity=0.153  Sum_probs=116.4

Q ss_pred             cHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHH
Q 014730           32 TIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVH  111 (419)
Q Consensus        32 t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (419)
                      ..+..|+ .      .+....|+.|++.. +..+|.+|.+|+||||-|+..|+.+|++.|+..|++ ++.+...|+||||
T Consensus        65 rl~lwaa-e------~nrl~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLh  135 (228)
T KOG0512|consen   65 RLLLWAA-E------KNRLTEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLH  135 (228)
T ss_pred             HHHHHHH-h------hccHHHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchh
Confidence            4566778 7      88899999999887 456888999999999999999999999999999998 7888889999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcH-HHHHHHHhh-CCCCCcCCCCCCCcHHHHHHhC
Q 014730          112 NAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLY-DVALDLLKL-HPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       112 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~~-~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                      .||.-.+.+++.+|+.+|++++. ......||||+|+...+. ..+.+|+-. +.... .++..+.||+..|.+-
T Consensus       136 SAckWnN~~va~~LLqhgaDVnA-~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg-~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  136 SACKWNNFEVAGRLLQHGADVNA-QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG-LKNNLEETAFDIARRT  208 (228)
T ss_pred             hhhcccchhHHHHHHhccCcccc-cccccchhhHHhhcccchHHHHHHHhhccccChh-hhcCccchHHHHHHHh
Confidence            99999999999999999999998 888888999999876554 455555543 44444 6777888999888764

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=4.7e-18  Score=144.00  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=105.6

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHhc------CCCCCccCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCCccc
Q 014730           66 ARQDNHGHTAVIFCAAKGNLKALKVLLKY------NPDLTNIRDSDGYLPVHNAAYYGH----KDTFQYLLEATNGVDIY  135 (419)
Q Consensus        66 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~------~~~~~~~~~~~g~t~L~~A~~~g~----~~~~~~Ll~~g~~~~~~  135 (419)
                      +.+|..|.||||+|++.|+.++++.|+..      +++ ++.+|..|.||||+|+..|+    .+++++|++.|++++. 
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~-   92 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA-   92 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-
Confidence            44678899999999999999999998643      466 78899999999999999998    5899999999999998 


Q ss_pred             cCC-CCCcHHHHHHHcCcHHHHHHHHh-hCCCCCcCCCCCCCcHHHHHHhCCC
Q 014730          136 RGN-DGAMVLLFLIAANLYDVALDLLK-LHPTIGRDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       136 ~~~-~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~~~l~~a~~~~~  186 (419)
                      ++. .|.||||+|+..++.+++++|+. .|+++. .+|..|.|||++|...+.
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNED  144 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCC
Confidence            775 89999999999999999999998 488877 889999999999998753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=3.3e-18  Score=136.33  Aligned_cols=113  Identities=26%  Similarity=0.323  Sum_probs=105.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcH
Q 014730           74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLY  153 (419)
Q Consensus        74 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~  153 (419)
                      --+..|+..+....|+.|++..++.+|.+|.+|+||||-|+.+|+.+|++.|+..|++++. +...|+||||.||+-.+.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a-~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEA-KTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccc-ccccCccchhhhhcccch
Confidence            3567899999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCC
Q 014730          154 DVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAF  188 (419)
Q Consensus       154 ~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  188 (419)
                      +++..|+.+|++++ +......||||+++...+..
T Consensus       144 ~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn~r  177 (228)
T KOG0512|consen  144 EVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRNSR  177 (228)
T ss_pred             hHHHHHHhccCccc-ccccccchhhHHhhcccchH
Confidence            99999999999998 77778899999999876543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=5.8e-19  Score=151.72  Aligned_cols=135  Identities=18%  Similarity=0.246  Sum_probs=124.3

Q ss_pred             ccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHH
Q 014730            2 IEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAA   81 (419)
Q Consensus         2 ~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~   81 (419)
                      |+.|+.--|+.-++...-++|.- |.+| .+|||.|| .      .|+..+++.|++.|  +.+|..+....||||.|+.
T Consensus         8 cregna~qvrlwld~tehdln~g-ddhg-fsplhwaa-k------egh~aivemll~rg--arvn~tnmgddtplhlaaa   76 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVG-DDHG-FSPLHWAA-K------EGHVAIVEMLLSRG--ARVNSTNMGDDTPLHLAAA   76 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccc-cccC-cchhhhhh-h------cccHHHHHHHHhcc--cccccccCCCCcchhhhhh
Confidence            45566666666677777788888 9999 99999999 9      99999999999999  9999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHH
Q 014730           82 KGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIA  149 (419)
Q Consensus        82 ~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~  149 (419)
                      .||.++|+.|++..++ +|..+..|.||||+||.-|...+.+-|+.+|+-++. .+++|.|||..|.-
T Consensus        77 hghrdivqkll~~kad-vnavnehgntplhyacfwgydqiaedli~~ga~v~i-cnk~g~tpldkakp  142 (448)
T KOG0195|consen   77 HGHRDIVQKLLSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNI-CNKKGMTPLDKAKP  142 (448)
T ss_pred             cccHHHHHHHHHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHhccceeee-cccCCCCchhhhch
Confidence            9999999999999999 899999999999999999999999999999999999 99999999987743

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.73  E-value=1.3e-16  Score=127.81  Aligned_cols=123  Identities=31%  Similarity=0.414  Sum_probs=114.8

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      +.+| .||||+|+ .      .|+.+++++|++.+  ...+..+..|.||+|.|+..++.+++++|+++++. ++..+..
T Consensus         4 ~~~g-~t~l~~a~-~------~~~~~~i~~li~~~--~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~   72 (126)
T cd00204           4 DEDG-RTPLHLAA-S------NGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKD   72 (126)
T ss_pred             CcCC-CCHHHHHH-H------cCcHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCC
Confidence            6788 99999999 9      99999999999999  76688899999999999999999999999999987 6788889


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730          106 GYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      |.||+|+|+..++.+++++|+++|.+.+. .+..+.||++.|...++.+++++|+
T Consensus        73 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          73 GNTPLHLAARNGNLDVVKLLLKHGADVNA-RDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999999988888 8899999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=4.3e-17  Score=122.68  Aligned_cols=87  Identities=32%  Similarity=0.447  Sum_probs=63.7

Q ss_pred             HHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHH
Q 014730           34 FHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNA  113 (419)
Q Consensus        34 L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A  113 (419)
                      ||+|| .      .|+.+++++|++.+  .+++.    |.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|
T Consensus         1 L~~A~-~------~~~~~~~~~ll~~~--~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A   66 (89)
T PF12796_consen    1 LHIAA-Q------NGNLEILKFLLEKG--ADINL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYA   66 (89)
T ss_dssp             HHHHH-H------TTTHHHHHHHHHTT--STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHH
T ss_pred             CHHHH-H------cCCHHHHHHHHHCc--CCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHH
Confidence            57777 7      77777777777776  55554    67777777777777777777777777 677777777777777


Q ss_pred             HHcCCHHHHHHHHhcCCCCcc
Q 014730          114 AYYGHKDTFQYLLEATNGVDI  134 (419)
Q Consensus       114 ~~~g~~~~~~~Ll~~g~~~~~  134 (419)
                      +..|+.+++++|+++|++++.
T Consensus        67 ~~~~~~~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   67 AENGNLEIVKLLLEHGADVNI   87 (89)
T ss_dssp             HHTTHHHHHHHHHHTTT-TTS
T ss_pred             HHcCCHHHHHHHHHcCCCCCC
Confidence            777777777777777777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=6.8e-18  Score=145.19  Aligned_cols=134  Identities=19%  Similarity=0.242  Sum_probs=121.6

Q ss_pred             CCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHH
Q 014730           45 DSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY  124 (419)
Q Consensus        45 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~  124 (419)
                      ||.|+.--|+..++.. ..+.|.-|..|.+|||+||+.|+..+++.|+..|+. +|..+....||||+|+..|+.++|+.
T Consensus         8 cregna~qvrlwld~t-ehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDT-EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCc-ccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHH
Confidence            4466655566666654 367899999999999999999999999999999999 89999999999999999999999999


Q ss_pred             HHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 014730          125 LLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLS  182 (419)
Q Consensus       125 Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  182 (419)
                      |++..+++|. .+..|+||||+||.-|...+.+-|+..|+.+. .-|+.|.||++-|.
T Consensus        86 ll~~kadvna-vnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpldkak  141 (448)
T KOG0195|consen   86 LLSRKADVNA-VNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHhcccch-hhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchhhhc
Confidence            9999999999 99999999999999999999999999999988 88999999998663

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=2.5e-16  Score=118.48  Aligned_cols=86  Identities=26%  Similarity=0.393  Sum_probs=79.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHH
Q 014730           76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDV  155 (419)
Q Consensus        76 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~  155 (419)
                      ||+||+.|+.+++++|++.+.+ ++.    |.||||+|+..|+.+++++|+++|++++. ++..|.||||.|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENGADINS-QDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhcccccc-cCCCCCCHHHHHHHcCCHHH
Confidence            7999999999999999999887 344    89999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHhhCCCCC
Q 014730          156 ALDLLKLHPTIG  167 (419)
Q Consensus       156 ~~~Ll~~~~~~~  167 (419)
                      +++|++.|+++.
T Consensus        75 ~~~Ll~~g~~~~   86 (89)
T PF12796_consen   75 VKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHTTT-TT
T ss_pred             HHHHHHcCCCCC
Confidence            999999998876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.69  E-value=4.3e-17  Score=136.09  Aligned_cols=101  Identities=13%  Similarity=0.059  Sum_probs=91.6

Q ss_pred             cccccCCCCCccHHHHHHHhhcccCCCchH---HHHHHHHhhCCCccccccCC-CCChHHHHHHHcCCHHHHHHHHhc-C
Q 014730           21 LTAKIVEPGSKTIFHTIAELLVDDDSDEAT---CLLDKLATKVDPQTLARQDN-HGHTAVIFCAAKGNLKALKVLLKY-N   95 (419)
Q Consensus        21 ~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~---~~v~~Ll~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~-~   95 (419)
                      ++.+ |..| .||||+|+ .      .|+.   +++++|++.|  ++++.++. .|.||||+|+..|+.+++++|+.+ +
T Consensus        48 ~~~~-d~~g-~t~Lh~a~-~------~~~~~~~e~v~~Ll~~g--adin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g  116 (154)
T PHA02736         48 VLEY-NRHG-KQCVHIVS-N------PDKADPQEKLKLLMEWG--ADINGKERVFGNTPLHIAVYTQNYELATWLCNQPG  116 (154)
T ss_pred             HHHh-cCCC-CEEEEeec-c------cCchhHHHHHHHHHHcC--CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC
Confidence            3445 8899 99999999 8      8876   5789999999  89999984 999999999999999999999985 8


Q ss_pred             CCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCc
Q 014730           96 PDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD  133 (419)
Q Consensus        96 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~  133 (419)
                      ++ ++.++..|.||||+|+..|+.+++++|+++|++.+
T Consensus       117 ~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        117 VN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            88 79999999999999999999999999999998764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.64  E-value=6.1e-16  Score=151.14  Aligned_cols=210  Identities=20%  Similarity=0.199  Sum_probs=155.2

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHhcC---------CCCCccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCC
Q 014730           65 LARQDNHGHTAVIFCAAKGNLKALKVLLKYN---------PDLTNIRDSDGYLPVHNAAYY---GHKDTFQYLLEATNGV  132 (419)
Q Consensus        65 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~---------~~~~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~  132 (419)
                      ++..+.....++..|...+..+....|+..+         -+ ++.+..-|.|.||.|.-+   ++-+++..|++.-...
T Consensus        94 p~~l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~-~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~l  172 (782)
T KOG3676|consen   94 PNILKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWK-LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKL  172 (782)
T ss_pred             cchhhhcchhhhhhccccccHHHHhccchhhhhhhhhhhhhc-cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHH
Confidence            3433333346778888888887777666665         33 566667899999999874   4568899999875532


Q ss_pred             ccc----cCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhccc
Q 014730          133 DIY----RGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQ  208 (419)
Q Consensus       133 ~~~----~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (419)
                      --.    ....|.||||+|+.+.+.++|++|++.|++++ ++            ..++-|...                 
T Consensus       173 ind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~-aR------------a~G~FF~~~-----------------  222 (782)
T KOG3676|consen  173 INDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVH-AR------------ACGAFFCPD-----------------  222 (782)
T ss_pred             hhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchh-hH------------hhccccCcc-----------------
Confidence            111    34579999999999999999999999999986 11            111111100                 


Q ss_pred             CCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHH
Q 014730          209 SCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQ  288 (419)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (419)
                                         +. ..+           .                                           
T Consensus       223 -------------------dq-k~~-----------r-------------------------------------------  228 (782)
T KOG3676|consen  223 -------------------DQ-KAS-----------R-------------------------------------------  228 (782)
T ss_pred             -------------------cc-ccc-----------c-------------------------------------------
Confidence                               00 000           0                                           


Q ss_pred             hhhhHhHHHHHHHHHhhhhhccccchhhh---hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHH
Q 014730          289 KLTHMRTVEIVRIICEGVVWTNFQKSAQL---SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREK  365 (419)
Q Consensus       289 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~---~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~  365 (419)
                                        .  ..+-....   ..||..||-.++.|+|++|+++ ++|++.+|+.|+|+||..|.+-..+
T Consensus       229 ------------------k--~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~-gAd~~aqDS~GNTVLH~lVi~~~~~  287 (782)
T KOG3676|consen  229 ------------------K--STNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH-GADPNAQDSNGNTVLHMLVIHFVTE  287 (782)
T ss_pred             ------------------c--ccCCcceeeeccCchHHHHHcCCHHHHHHHHhc-CCCCCccccCCChHHHHHHHHHHHH
Confidence                              0  00000000   6799999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          366 VFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       366 iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +++++++++.. .+...+++.|.|||-+||+.|..+
T Consensus       288 My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  288 MYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKKE  322 (782)
T ss_pred             HHHHHHhcCCC-ccccccccCCCChHHHHHHhhhHH
Confidence            99999999733 457889999999999999999865

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.62  E-value=1.2e-14  Score=116.40  Aligned_cols=115  Identities=30%  Similarity=0.435  Sum_probs=106.5

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 014730           67 RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLF  146 (419)
Q Consensus        67 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~  146 (419)
                      ..|..|.||||+|+..|+.+++++|++++.+ .+.++..|.||+|.|+..++.+++++|++.|++++. .+..|.||+|.
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA-RDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHH
Confidence            3567899999999999999999999999988 588899999999999999999999999999988888 88899999999


Q ss_pred             HHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhC
Q 014730          147 LIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       147 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                      |+..++.+++++|+.++.+.. ..+..|.+|+++|...
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~  116 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKN  116 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhc
Confidence            999999999999999987776 6889999999999876

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.61  E-value=4.7e-15  Score=145.02  Aligned_cols=175  Identities=17%  Similarity=0.196  Sum_probs=142.9

Q ss_pred             cCCChHHHHHHHHhC--------CcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccc----cCC
Q 014730            3 EKNDWPGVEDFVTNH--------PDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLAR----QDN   70 (419)
Q Consensus         3 ~~g~~~~v~~ll~~~--------~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~----~~~   70 (419)
                      ..|+.+.+..++...        -.+++.+ ...| .|.||.|. .   ....++-++++.|++.. |.-+|.    ..-
T Consensus       110 ~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~G-ET~Lh~~l-L---~~~~~~n~la~~LL~~~-p~lind~~~~eeY  182 (782)
T KOG3676|consen  110 SEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATG-ETLLHKAL-L---NLSDGHNELARVLLEIF-PKLINDIYTSEEY  182 (782)
T ss_pred             ccccHHHHhccchhhhhhhhhhhhhccccc-cchh-hhHHHHHH-h---cCchhHHHHHHHHHHHh-HHHhhhhhhhHhh
Confidence            445555555555442        2556666 6678 99999998 5   23357789999999987 443442    234


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCccC---------C--------------CCCchHHHHHHHcCCHHHHHHHHh
Q 014730           71 HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIR---------D--------------SDGYLPVHNAAYYGHKDTFQYLLE  127 (419)
Q Consensus        71 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~---------~--------------~~g~t~L~~A~~~g~~~~~~~Ll~  127 (419)
                      .|.||||+|+.+.+.++|.+|++.|+| ++.+         |              +.|..||-+||-.++.|++++|++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGAD-VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCc-hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            799999999999999999999999999 4443         1              137789999999999999999999


Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCC--CCcCCCCCCCcHHHHHHhCCCC
Q 014730          128 ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPT--IGRDNIDSRRIVLNTLSQKPYA  187 (419)
Q Consensus       128 ~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~~~l~~a~~~~~~  187 (419)
                      +|+|++. +|..|+|.||..+..-..++-++++..|++  .. .+|..|.|||.+|++.+..
T Consensus       262 ~gAd~~a-qDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~-v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  262 HGADPNA-QDSNGNTVLHMLVIHFVTEMYDLALELGANALEH-VRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             cCCCCCc-cccCCChHHHHHHHHHHHHHHHHHHhcCCCcccc-ccccCCCChHHHHHHhhhH
Confidence            9999999 999999999999999999999999999988  55 7999999999999997644

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=8.9e-14  Score=123.59  Aligned_cols=127  Identities=27%  Similarity=0.341  Sum_probs=119.1

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCC-----HHHHHHHHhcCC--CC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGN-----LKALKVLLKYNP--DL   98 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~~~~Ll~~~~--~~   98 (419)
                      +..+ .+++|.++ .      .+....+++++..|  .+++.++..|.||||+|+..++     .+++++|++.|+  +.
T Consensus        70 ~~~~-~~~~~~~~-~------~~~~~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~  139 (235)
T COG0666          70 DLDG-RLPLHSAA-S------KGDDKIVKLLLASG--ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV  139 (235)
T ss_pred             Cccc-cCHHHHHH-H------cCcHHHHHHHHHcC--CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC
Confidence            5557 89999999 9      99999999999999  8899999999999999999999     999999999999  55


Q ss_pred             CccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhC
Q 014730           99 TNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH  163 (419)
Q Consensus        99 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  163 (419)
                      .+.++..|.||||+|+..|+.+++++|++.|++++. .+..|.|+++.|+..++.++++.++..+
T Consensus       140 ~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         140 NNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS-RNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcc-cccCCCcchhhhcccchHHHHHHHHhcC
Confidence            778899999999999999999999999999999999 8999999999999999999999999875

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.55  E-value=2.3e-14  Score=102.23  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=75.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHH
Q 014730           75 AVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYD  154 (419)
Q Consensus        75 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~  154 (419)
                      -+.+++.+|..+-|+.....|-+ +|.. ..|++|||+|+.+|..++++||+..|++++. +|+.|.|||..|+..||.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n-Vn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~-kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN-VNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQD-KDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc-HHHH-hCCcccchHhhhcchHHHHHHHHHhccccCC-ccccCCcHHHHHHHHhhHH
Confidence            45667777777777777777655 4432 3677888888888888888888888887777 7888888888888888888


Q ss_pred             HHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 014730          155 VALDLLKLHPTIGRDNIDSRRIVLNTL  181 (419)
Q Consensus       155 ~~~~Ll~~~~~~~~~~~~~g~~~l~~a  181 (419)
                      ||++|+..|++.. .....|.+.+..+
T Consensus        82 cVklLL~~GAdrt-~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQNGADRT-IHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHcCcccc-eeCCCchhHHhhc
Confidence            8888887777765 5666676666543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.55  E-value=2.7e-14  Score=101.86  Aligned_cols=102  Identities=19%  Similarity=0.266  Sum_probs=92.4

Q ss_pred             cHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHH
Q 014730           32 TIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVH  111 (419)
Q Consensus        32 t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (419)
                      .-+.+++ .      .|..+-|+..+..|  .++|..- .|.+|||+|+..|..+++.+|+..|++ ++.+|..|.|||.
T Consensus         4 ~~~~W~v-k------NG~~DeVk~~v~~g--~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLL   72 (117)
T KOG4214|consen    4 MSVAWNV-K------NGEIDEVKQSVNEG--LNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLL   72 (117)
T ss_pred             hhHhhhh-c------cCcHHHHHHHHHcc--ccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHH
Confidence            3456677 7      99999999999999  7787655 899999999999999999999999999 8999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHH
Q 014730          112 NAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLL  145 (419)
Q Consensus       112 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~  145 (419)
                      .|++-||.++|++|+++|++-.. ...+|.+.+.
T Consensus        73 sAvwEGH~~cVklLL~~GAdrt~-~~PdG~~~~e  105 (117)
T KOG4214|consen   73 SAVWEGHRDCVKLLLQNGADRTI-HAPDGTALIE  105 (117)
T ss_pred             HHHHHhhHHHHHHHHHcCcccce-eCCCchhHHh
Confidence            99999999999999999999888 8888877664

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=9.3e-13  Score=122.39  Aligned_cols=113  Identities=19%  Similarity=0.236  Sum_probs=101.9

Q ss_pred             CchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHH
Q 014730           47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL  126 (419)
Q Consensus        47 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll  126 (419)
                      .|-+++|+..+...  .++...|..|.|+||-|+-.||.+||++|++.|++ +|..|.+|+||||+|+...+..+++.|+
T Consensus       560 eGEldlVq~~i~ev--~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~ckqLV  636 (752)
T KOG0515|consen  560 EGELDLVQRIIYEV--TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMCKQLV  636 (752)
T ss_pred             cchHHHHHHHHHhh--cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHHHHHH
Confidence            99999999999998  88899999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             hcCCCCccccCCCCCcHHHHHH--HcCcHHHHHHHHhh
Q 014730          127 EATNGVDIYRGNDGAMVLLFLI--AANLYDVALDLLKL  162 (419)
Q Consensus       127 ~~g~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~  162 (419)
                      +.|+-+-...-.++.|+...+-  ..|..+|.+||..-
T Consensus       637 e~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  637 ESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999776634567888877653  46888999999753

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=6.6e-13  Score=123.34  Aligned_cols=116  Identities=16%  Similarity=0.105  Sum_probs=101.1

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|.++.|+..+.+ =.|+... +.+| .|+||-|+ .      .||.+||++||+.|  +++|..|.+|+||||+|+
T Consensus       557 aaLeGEldlVq~~i~e-v~DpSqp-NdEG-ITaLHNAi-C------aghyeIVkFLi~~g--anVNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYE-VTDPSQP-NDEG-ITALHNAI-C------AGHYEIVKFLIEFG--ANVNAADSDGWTPLHCAA  624 (752)
T ss_pred             hhhcchHHHHHHHHHh-hcCCCCC-Cccc-hhHHhhhh-h------cchhHHHHHHHhcC--CcccCccCCCCchhhhhh
Confidence            5678999999999987 5566666 8999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHc--CCHHHHHHHHhc
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYY--GHKDTFQYLLEA  128 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~~~~Ll~~  128 (419)
                      .-++..+++.|.+.|+.+.-..-.++.|+..-|-..  |-..|.+||..-
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999999999885444446889998776543  678899998753

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=3e-12  Score=110.59  Aligned_cols=121  Identities=20%  Similarity=0.236  Sum_probs=111.4

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      ..||.-+. .      .|+.+-+..|++..  .++|..|..|.|||..|+..|+.+++++|++.|+|+..-++..+.|||
T Consensus        13 ~~~Lle~i-~------Kndt~~a~~LLs~v--r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpL   83 (396)
T KOG1710|consen   13 KSPLLEAI-D------KNDTEAALALLSTV--RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPL   83 (396)
T ss_pred             hhHHHHHH-c------cCcHHHHHHHHHHh--hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHH
Confidence            67888888 8      99999999999987  889999999999999999999999999999999995444556789999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLK  161 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  161 (419)
                      |+|+..|+.++..+|++.|+.+.. .+.-|+|+-..|+.-|+-+||..+-.
T Consensus        84 mFAALSGn~dvcrllldaGa~~~~-vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   84 MFAALSGNQDVCRLLLDAGARMYL-VNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHHHcCCchHHHHHHhccCcccc-ccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999999999999 99999999999999999999987654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.39  E-value=1.7e-12  Score=132.48  Aligned_cols=104  Identities=21%  Similarity=0.239  Sum_probs=93.7

Q ss_pred             HHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHH
Q 014730           33 IFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHN  112 (419)
Q Consensus        33 ~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  112 (419)
                      .|+.|+ .      .|+.+.++.|++.|  +++|.+|..|.||||+||..|+.+++++|+++|++ ++.+|..|.||||+
T Consensus        85 ~L~~aa-~------~G~~~~vk~LL~~G--adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~  154 (664)
T PTZ00322         85 ELCQLA-A------SGDAVGARILLTGG--ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLEL  154 (664)
T ss_pred             HHHHHH-H------cCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence            477778 7      99999999999999  99999999999999999999999999999999999 79999999999999


Q ss_pred             HHHcCCHHHHHHHHhc-------CCCCccccCCCCCcHHHHH
Q 014730          113 AAYYGHKDTFQYLLEA-------TNGVDIYRGNDGAMVLLFL  147 (419)
Q Consensus       113 A~~~g~~~~~~~Ll~~-------g~~~~~~~~~~g~t~l~~a  147 (419)
                      |+..|+.+++++|+++       |++.+. .+..|.+|+..+
T Consensus       155 A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~-~~~~g~~~~~~~  195 (664)
T PTZ00322        155 AEENGFREVVQLLSRHSQCHFELGANAKP-DSFTGKPPSLED  195 (664)
T ss_pred             HHHCCcHHHHHHHHhCCCcccccCCCCCc-cccCCCCccchh
Confidence            9999999999999998       777777 666676665543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.39  E-value=2.9e-12  Score=130.85  Aligned_cols=105  Identities=24%  Similarity=0.219  Sum_probs=95.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHH
Q 014730           75 AVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYD  154 (419)
Q Consensus        75 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~  154 (419)
                      .|+.|+..|+.+.+++|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~-~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcHH
Confidence            58889999999999999999999 799999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHhh-------CCCCCcCCCCCCCcHHHHHH
Q 014730          155 VALDLLKL-------HPTIGRDNIDSRRIVLNTLS  182 (419)
Q Consensus       155 ~~~~Ll~~-------~~~~~~~~~~~g~~~l~~a~  182 (419)
                      ++++|+.+       |++.. ..+..|.+|+....
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~-~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAK-PDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCC-ccccCCCCccchhh
Confidence            99999998       66665 56666777765443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=1.9e-13  Score=92.40  Aligned_cols=55  Identities=22%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             HHHhcC-CccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhc
Q 014730          336 FIMAYD-SCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLA  394 (419)
Q Consensus       336 Ll~~~~-~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A  394 (419)
                      ||+. + ++++.+|..|+||||+|+.+++.+++++|++.   +.+++.+|+.|+||||+|
T Consensus         1 LL~~-~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~---g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEH-GPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN---GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ------T--TT---TTS--HHHHHHHHT-HHHHHHHHHC---T--TT---TTS--HHHH-
T ss_pred             CCcc-CcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC---cCCCCCCcCCCCCHHHhC
Confidence            5677 6 88999999999999999999999999999966   888999999999999997

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.38  E-value=2.3e-12  Score=114.43  Aligned_cols=115  Identities=24%  Similarity=0.279  Sum_probs=106.2

Q ss_pred             ccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCch-----HHHHHHHHhhCCCc---cccccCCCCC
Q 014730            2 IEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEA-----TCLLDKLATKVDPQ---TLARQDNHGH   73 (419)
Q Consensus         2 ~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~-----~~~v~~Ll~~~~~~---~~~~~~~~g~   73 (419)
                      +..++.+.++.++.. +.+++.+ +..| .||||+|+ .      .|+     .++++.|++.|  +   ..+.+|..|.
T Consensus        81 ~~~~~~~~~~~l~~~-~~~~~~~-~~~g-~t~l~~a~-~------~~~~~~~~~~~~~~ll~~g--~~~~~~~~~~~~g~  148 (235)
T COG0666          81 ASKGDDKIVKLLLAS-GADVNAK-DADG-DTPLHLAA-L------NGNPPEGNIEVAKLLLEAG--ADLDVNNLRDEDGN  148 (235)
T ss_pred             HHcCcHHHHHHHHHc-CCCcccc-cCCC-CcHHHHHH-h------cCCcccchHHHHHHHHHcC--CCCCCccccCCCCC
Confidence            456788888888877 7788898 9999 99999999 9      999     99999999999  6   6777799999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q 014730           74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEAT  129 (419)
Q Consensus        74 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g  129 (419)
                      ||||+|+..|+.+++.+|++.+++ ++.++..|.|+++.|+..++.++++.+++.+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999 7888999999999999999999999999986

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.38  E-value=1.2e-12  Score=87.92  Aligned_cols=54  Identities=41%  Similarity=0.657  Sum_probs=31.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHH
Q 014730           72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL  126 (419)
Q Consensus        72 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll  126 (419)
                      |.||||+||+.|+.+++++|+++|.+ ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666666666 5666666666666666666666666664

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.35  E-value=2.7e-12  Score=86.28  Aligned_cols=53  Identities=26%  Similarity=0.372  Sum_probs=45.7

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLL   92 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll   92 (419)
                      .||||.|| .      .|+.+++++|++.|  .+++.+|..|.||||+|+..|+.+++++|+
T Consensus         2 ~t~lh~A~-~------~g~~~~~~~Ll~~~--~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    2 RTPLHWAA-R------SGNLEIVKLLLEHG--ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SBHHHHHH-H------TT-HHHHHHHHHTT--SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHH-H------hCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            89999999 9      99999999999999  999999999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.30  E-value=2.4e-12  Score=87.02  Aligned_cols=56  Identities=18%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             HHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHH
Q 014730           13 FVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFC   79 (419)
Q Consensus        13 ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A   79 (419)
                      ||+..+.+++.+ |..| .||||+|| .      .|+.+++++|++.|  ++++.+|..|.||||+|
T Consensus         1 LL~~~~~~~n~~-d~~G-~T~LH~A~-~------~g~~~~v~~Ll~~g--~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQ-DKYG-NTPLHWAA-R------YGHSEVVRLLLQNG--ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT----TTS---HHHHHH-H------HT-HHHHHHHHHCT----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCc-CCCC-CcHHHHHH-H------cCcHHHHHHHHHCc--CCCCCCcCCCCCHHHhC
Confidence            466656889999 9999 99999999 9      99999999999888  99999999999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.23  E-value=5.3e-11  Score=103.01  Aligned_cols=115  Identities=19%  Similarity=0.260  Sum_probs=103.5

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccc-cCCCCChHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLAR-QDNHGHTAVIFC   79 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~-~~~~g~t~L~~A   79 (419)
                      |+-+||.+....|++. -..+|.+ |+.| .|+|.-|+ .      .|+.++++.|++.|  +++|. ++..++||||+|
T Consensus        19 ~i~Kndt~~a~~LLs~-vr~vn~~-D~sG-Ms~LahAa-y------kGnl~~v~lll~~g--aDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   19 AIDKNDTEAALALLST-VRQVNQR-DPSG-MSVLAHAA-Y------KGNLTLVELLLELG--ADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             HHccCcHHHHHHHHHH-hhhhhcc-CCCc-ccHHHHHH-h------cCcHHHHHHHHHhC--CCcCcccccccccHHHHH
Confidence            4567899999999977 5568888 9999 99999999 9      99999999999999  88886 567899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q 014730           80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA  128 (419)
Q Consensus        80 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~  128 (419)
                      +.+|+.++..+|++.|+. +...+.-|+|+-..|+.-|+.++|..+-.+
T Consensus        87 ALSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHcCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999 788899999999999999999998865443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.75  E-value=6.2e-09  Score=102.28  Aligned_cols=95  Identities=27%  Similarity=0.409  Sum_probs=83.3

Q ss_pred             HHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCC-CCchHHHHHHHcCCHHHHHHHHhcCCC
Q 014730           53 LDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS-DGYLPVHNAAYYGHKDTFQYLLEATNG  131 (419)
Q Consensus        53 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~g~~  131 (419)
                      ++-++.+.+..-.|.+|..|.|+||+|+..+..+++.+|+++|.+ +..+|. +|+||||-|+.+|+.+++-.|+++|..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            555555543345788999999999999999999999999999999 677774 899999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHH
Q 014730          132 VDIYRGNDGAMVLLFLIA  149 (419)
Q Consensus       132 ~~~~~~~~g~t~l~~a~~  149 (419)
                      ... .|..|..||...++
T Consensus       112 L~i-~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRI-KDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEE-ecccCCCHHHHHhh
Confidence            888 99999999987665

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.74  E-value=8.5e-09  Score=101.32  Aligned_cols=95  Identities=21%  Similarity=0.259  Sum_probs=84.8

Q ss_pred             HHHHHHHhCC-cccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCC-CCChHHHHHHHcCCHH
Q 014730            9 GVEDFVTNHP-DALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDN-HGHTAVIFCAAKGNLK   86 (419)
Q Consensus         9 ~v~~ll~~~~-~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~   86 (419)
                      -++.++++.+ ...|.+ |..| +|+||+|+ .      .+..+++++|+++|  .+++.+|. .|+||||-|+.+|+++
T Consensus        32 qlk~F~~k~c~n~anik-D~~G-R~alH~~~-S------~~k~~~l~wLlqhG--idv~vqD~ESG~taLHRaiyyG~id  100 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIK-DRYG-RTALHIAV-S------ENKNSFLRWLLQHG--IDVFVQDEESGYTALHRAIYYGNID  100 (1267)
T ss_pred             HHHHHHHHhhhhhhhHH-Hhhc-cceeeeee-c------cchhHHHHHHHhcC--ceeeeccccccchHhhHhhhhchHH
Confidence            4566666633 345777 9999 99999999 9      99999999999999  99999996 7999999999999999


Q ss_pred             HHHHHHhcCCCCCccCCCCCchHHHHHHH
Q 014730           87 ALKVLLKYNPDLTNIRDSDGYLPVHNAAY  115 (419)
Q Consensus        87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  115 (419)
                      ++.+|+.+|.. ..++|.+|..||.+.++
T Consensus       101 ca~lLL~~g~S-L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  101 CASLLLSKGRS-LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHHHhcCCc-eEEecccCCCHHHHHhh
Confidence            99999999998 79999999999998887

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.72  E-value=1.1e-06  Score=87.68  Aligned_cols=122  Identities=16%  Similarity=0.061  Sum_probs=102.1

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCC--ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCch
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDP--QTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYL  108 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~--~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t  108 (419)
                      .--...|| +      .|+.-.|+..++....  -++|..|.-|.++|+.|+.+.+.+++++|+++... .       ..
T Consensus        26 e~~fL~a~-E------~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~-~-------gd   90 (822)
T KOG3609|consen   26 EKGFLLAH-E------NGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE-E-------GD   90 (822)
T ss_pred             hHHHHHHH-H------cCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc-c-------ch
Confidence            45567888 8      9999999999987622  45888999999999999999999999999999765 1       44


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcc---------ccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCC
Q 014730          109 PVHNAAYYGHKDTFQYLLEATNGVDI---------YRGNDGAMVLLFLIAANLYDVALDLLKLHPTIG  167 (419)
Q Consensus       109 ~L~~A~~~g~~~~~~~Ll~~g~~~~~---------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  167 (419)
                      +|.+|+..|..++|+.++.+......         ..-..+.||+.+|+..+++||++.|+++|+.++
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            88999999999999999987543211         033457899999999999999999999999887

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.70  E-value=2.8e-08  Score=93.73  Aligned_cols=113  Identities=20%  Similarity=0.184  Sum_probs=96.5

Q ss_pred             CchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCchHHHHHHHcCCHHHHHHH
Q 014730           47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPD-LTNIRDSDGYLPVHNAAYYGHKDTFQYL  125 (419)
Q Consensus        47 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~L  125 (419)
                      .+++--++-....|  .++-.++....|.||+|+..|+-++|+|++++++. +.+..+..|.|+||-|+-.++..+.++|
T Consensus       876 ~~D~~klqE~h~~g--g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~l  953 (1004)
T KOG0782|consen  876 SSDLMKLQETHLNG--GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLL  953 (1004)
T ss_pred             hccHHHHHHHHhcC--CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHH
Confidence            56655444445555  56777899999999999999999999999999864 3456678899999999999999999999


Q ss_pred             HhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhh
Q 014730          126 LEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKL  162 (419)
Q Consensus       126 l~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  162 (419)
                      ++.|+.... .|..|.||-..|-..|+.+++-||-.+
T Consensus       954 vdagasl~k-td~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  954 VDAGASLRK-TDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             Hhcchhhee-cccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999988 999999999999999999999998654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.68  E-value=7.9e-08  Score=89.42  Aligned_cols=100  Identities=20%  Similarity=0.180  Sum_probs=85.3

Q ss_pred             cccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCCcc
Q 014730           23 AKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDN-HGHTAVIFCAAKGNLKALKVLLKYNPDLTNI  101 (419)
Q Consensus        23 ~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~  101 (419)
                      .+ |.+| .+.=-+.- .+..++|.|+.+..-.|+..|  +++|..+. .|.||||.|++.|...-+++|+-+|++ ++.
T Consensus       122 ~r-DdD~-~~~~~Lsr-QLhasvRt~nlet~LRll~lG--A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a  195 (669)
T KOG0818|consen  122 CR-DDDS-VTAKDLSK-QLHSSVRTGNLETCLRLLSLG--AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGA  195 (669)
T ss_pred             CC-Ccch-hhHHHHHH-HHHHHhhcccHHHHHHHHHcc--cccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCC
Confidence            45 6677 66655554 555566699999999999999  99998875 799999999999999999999999999 899


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhc
Q 014730          102 RDSDGYLPVHNAAYYGHKDTFQYLLEA  128 (419)
Q Consensus       102 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~  128 (419)
                      .|.+|.||+.+|-..||-++.+-|++.
T Consensus       196 ~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  196 QDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            999999999999999998887777654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.67  E-value=2.9e-08  Score=57.12  Aligned_cols=28  Identities=39%  Similarity=0.597  Sum_probs=17.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCc
Q 014730          106 GYLPVHNAAYYGHKDTFQYLLEATNGVD  133 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~  133 (419)
                      |+||||+|++.|+.+++++|+++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.64  E-value=1e-07  Score=89.97  Aligned_cols=114  Identities=13%  Similarity=0.072  Sum_probs=92.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccc-cCCCCCcHHHHHHHc
Q 014730           72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY-RGNDGAMVLLFLIAA  150 (419)
Q Consensus        72 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~~g~t~l~~a~~~  150 (419)
                      +.+ +.-|+..+++--++.+-..|.+ .-+++.+..+.||+|++.|+-++|+|++.+|....+. .+..|.|+||.|+..
T Consensus       867 see-il~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  867 SEE-ILRAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ  944 (1004)
T ss_pred             cHH-HHHHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh
Confidence            444 4445555554444555556666 5678888999999999999999999999999854332 788999999999999


Q ss_pred             CcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCC
Q 014730          151 NLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAF  188 (419)
Q Consensus       151 ~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~  188 (419)
                      ++-.+.++|++.|+.+. ..|..|.||-.-|.+.+++.
T Consensus       945 ~~r~vc~~lvdagasl~-ktd~kg~tp~eraqqa~d~d  981 (1004)
T KOG0782|consen  945 RNRAVCQLLVDAGASLR-KTDSKGKTPQERAQQAGDPD  981 (1004)
T ss_pred             cchHHHHHHHhcchhhe-ecccCCCChHHHHHhcCCch
Confidence            99999999999999887 78999999999888776554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.58  E-value=7.9e-08  Score=55.30  Aligned_cols=29  Identities=34%  Similarity=0.597  Sum_probs=27.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCc
Q 014730           71 HGHTAVIFCAAKGNLKALKVLLKYNPDLTN  100 (419)
Q Consensus        71 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~  100 (419)
                      +|+||||+||+.|+.+++++|+++|++ ++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad-vn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD-VN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC-CC
Confidence            589999999999999999999999998 44

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.55  E-value=2.5e-07  Score=87.74  Aligned_cols=83  Identities=23%  Similarity=0.273  Sum_probs=49.3

Q ss_pred             CchHHHHHHHHhhCCCccccc--cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHH
Q 014730           47 DEATCLLDKLATKVDPQTLAR--QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY  124 (419)
Q Consensus        47 ~g~~~~v~~Ll~~~~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~  124 (419)
                      ..++..+-.|+.+|....+|.  .+.+|.|+||.||+.|+..+.++|+-+|++ +..+|..|.|+|.+|-+.|..+++..
T Consensus       634 ~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~sqec~d~  712 (749)
T KOG0705|consen  634 AEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAGSQECIDV  712 (749)
T ss_pred             HHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhcccHHHHHH
Confidence            556666666666663222222  334556666666666666666666666666 56666666666666666666666666


Q ss_pred             HHhcCC
Q 014730          125 LLEATN  130 (419)
Q Consensus       125 Ll~~g~  130 (419)
                      |+.+|+
T Consensus       713 llq~gc  718 (749)
T KOG0705|consen  713 LLQYGC  718 (749)
T ss_pred             HHHcCC
Confidence            666665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.51  E-value=1.8e-07  Score=55.38  Aligned_cols=29  Identities=34%  Similarity=0.558  Sum_probs=17.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 014730          106 GYLPVHNAAYYGHKDTFQYLLEATNGVDI  134 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~  134 (419)
                      |.||||+|+..|+.+++++|+++|++++.
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            55566666666666666666665555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.51  E-value=1.5e-07  Score=87.34  Aligned_cols=93  Identities=25%  Similarity=0.248  Sum_probs=84.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCcHHHHH
Q 014730           69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA-TNGVDIYRGNDGAMVLLFL  147 (419)
Q Consensus        69 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~~g~t~l~~a  147 (419)
                      +..+.-++++|++.|+...++-+.-.|.+ ++.+|++.+|+||.|+.-|+.+++++|++. +.+++. +|++|+|||.-|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~-kDRw~rtPlDdA  580 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDP-KDRWGRTPLDDA  580 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCCh-hhccCCCcchHh
Confidence            45677889999999999999988888998 799999999999999999999999999986 567777 999999999999


Q ss_pred             HHcCcHHHHHHHHhhC
Q 014730          148 IAANLYDVALDLLKLH  163 (419)
Q Consensus       148 ~~~~~~~~~~~Ll~~~  163 (419)
                      ...+|.+++++|-+..
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            9999999999998753

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.47  E-value=1.7e-07  Score=86.91  Aligned_cols=93  Identities=24%  Similarity=0.250  Sum_probs=85.3

Q ss_pred             CCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCc
Q 014730           28 PGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGY  107 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~  107 (419)
                      ++ ..++.+|+ .      .|++..++.+.-.|  .+++.+|-+..|+||.|+..|+.+++++|++.-...++.+|..|+
T Consensus       505 ~~-~i~~~~aa-~------~GD~~alrRf~l~g--~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~r  574 (622)
T KOG0506|consen  505 DT-VINVMYAA-K------NGDLSALRRFALQG--MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGR  574 (622)
T ss_pred             cc-hhhhhhhh-h------cCCHHHHHHHHHhc--ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCC
Confidence            45 68899999 9      99999999999999  999999999999999999999999999999995444789999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCC
Q 014730          108 LPVHNAAYYGHKDTFQYLLEATN  130 (419)
Q Consensus       108 t~L~~A~~~g~~~~~~~Ll~~g~  130 (419)
                      |||.-|..++|.+++++|-+.-.
T Consensus       575 tPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  575 TPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CcchHhHhcCcHHHHHHHHHHhc
Confidence            99999999999999999988743

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.46  E-value=8.2e-07  Score=82.84  Aligned_cols=94  Identities=20%  Similarity=0.204  Sum_probs=69.8

Q ss_pred             cccCCCCChH------HHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCC
Q 014730           66 ARQDNHGHTA------VIFCAAKGNLKALKVLLKYNPDLTNIRD-SDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGN  138 (419)
Q Consensus        66 ~~~~~~g~t~------L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~  138 (419)
                      ..+|.+|.|.      ||.+++.|+.++.--|+..|++ +|..+ ..|.||||.|++.|+.-=+++|+-+|+|+.. .|.
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~-~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a-~d~  198 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQ-ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA-QDS  198 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccc-cCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC-CCC
Confidence            3455555543      7777788888887777788877 56555 3677888888888888888888888888888 788


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHh
Q 014730          139 DGAMVLLFLIAANLYDVALDLLK  161 (419)
Q Consensus       139 ~g~t~l~~a~~~~~~~~~~~Ll~  161 (419)
                      .|.||+.+|-..||-++.+-|++
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHH
Confidence            88888888888887776666654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.42  E-value=7.1e-07  Score=84.25  Aligned_cols=88  Identities=20%  Similarity=0.363  Sum_probs=73.0

Q ss_pred             HHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHH
Q 014730           33 IFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHN  112 (419)
Q Consensus        33 ~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  112 (419)
                      |+|.++ .      ....+-....+.......++..|..|.||||.|+..|+.+.+..|+..+++ +.++|..|++|||-
T Consensus        23 ~lh~~~-~------~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~E   94 (560)
T KOG0522|consen   23 PLHWAV-V------TTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHE   94 (560)
T ss_pred             ccchhh-h------ccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHH
Confidence            488888 7      666665555333222367889999999999999999999999999999999 79999999999999


Q ss_pred             HHHcCCHHHHHHHHhc
Q 014730          113 AAYYGHKDTFQYLLEA  128 (419)
Q Consensus       113 A~~~g~~~~~~~Ll~~  128 (419)
                      |+..|+..++..++.+
T Consensus        95 Av~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   95 AVSTGNEQIITEVLRH  110 (560)
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            9999999888777765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.41  E-value=4.2e-07  Score=53.80  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=30.1

Q ss_pred             CCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCC
Q 014730           28 PGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDN   70 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~   70 (419)
                      +| .||||+|+ .      .|+.+++++|+++|  ++++.+|+
T Consensus         1 dG-~TpLh~A~-~------~~~~~~v~~Ll~~g--a~~~~~d~   33 (33)
T PF00023_consen    1 DG-NTPLHYAA-Q------RGHPDIVKLLLKHG--ADINARDN   33 (33)
T ss_dssp             TS-BBHHHHHH-H------TTCHHHHHHHHHTT--SCTTCBCT
T ss_pred             Cc-ccHHHHHH-H------HHHHHHHHHHHHCc--CCCCCCCC
Confidence            47 99999999 9      99999999999999  88888764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.28  E-value=2.2e-06  Score=81.47  Aligned_cols=89  Identities=22%  Similarity=0.180  Sum_probs=76.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCC-Cc--cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC
Q 014730           75 AVIFCAAKGNLKALKVLLKYNPDL-TN--IRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN  151 (419)
Q Consensus        75 ~L~~A~~~g~~~~~~~Ll~~~~~~-~~--~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~  151 (419)
                      -|.-|....+...+-+|+.+|... ++  --+.+|+|+||+||+.|+..+.++|+-+|+|+.. +|..|+|+|.+|-..|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~-rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMA-RDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcccee-cccCCchhhhhHhhcc
Confidence            355677777888899999997541 11  2234689999999999999999999999999999 9999999999999999


Q ss_pred             cHHHHHHHHhhCC
Q 014730          152 LYDVALDLLKLHP  164 (419)
Q Consensus       152 ~~~~~~~Ll~~~~  164 (419)
                      .-+|+..|+.+|.
T Consensus       706 sqec~d~llq~gc  718 (749)
T KOG0705|consen  706 SQECIDVLLQYGC  718 (749)
T ss_pred             cHHHHHHHHHcCC
Confidence            9999999999984

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.21  E-value=2.3e-06  Score=87.22  Aligned_cols=125  Identities=18%  Similarity=0.146  Sum_probs=101.5

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhh-CCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCccCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATK-VDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKY-NPDLTNIRD  103 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~  103 (419)
                      .-.| .+.+|+++ .      .++.-+++.+++- +  ......|..|.-.+|+ |..++.+++-+|+.- |.. ++++|
T Consensus       571 ~~r~-~lllhL~a-~------~lyawLie~~~e~~~--~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~a-i~i~D  638 (975)
T KOG0520|consen  571 NFRD-MLLLHLLA-E------LLYAWLIEKVIEWAG--SGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVA-IDIRD  638 (975)
T ss_pred             CCcc-hHHHHHHH-H------HhHHHHHHHHhcccc--cCchhhcccCCChhhH-hhhcCCceeEEEEeecccc-ccccc
Confidence            5567 99999999 9      9999999999996 5  4555667777777887 555667776666544 555 79999


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccc-----cCCCCCcHHHHHHHcCcHHHHHHHHhh
Q 014730          104 SDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY-----RGNDGAMVLLFLIAANLYDVALDLLKL  162 (419)
Q Consensus       104 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-----~~~~g~t~l~~a~~~~~~~~~~~Ll~~  162 (419)
                      ..|+||||+|+.+|+..++..|++.|++....     ....|.|+-.+|..+|+..+.-+|-+.
T Consensus       639 ~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  639 RNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999999999888765442     345699999999999999998888765

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.11  E-value=8.3e-06  Score=67.05  Aligned_cols=72  Identities=19%  Similarity=0.235  Sum_probs=65.9

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 014730           63 QTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI  134 (419)
Q Consensus        63 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~  134 (419)
                      .++|.+|..|+|++++|+..|..+.++||+.+|+..+...|..|.+++.+|-+.|..+.++.|.++..+..-
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~   74 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSH   74 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCC
Confidence            578999999999999999999999999999999444899999999999999999999999999999766554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.10  E-value=7.2e-06  Score=82.04  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=95.8

Q ss_pred             CccCCChHHHHHHHHhCC---cccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHH
Q 014730            1 MIEKNDWPGVEDFVTNHP---DALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVI   77 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~---~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~   77 (419)
                      |+..||...|+..++...   .++|.. |.-| +++|+.|. .      ..+.++++.|++..  ...       .-+|.
T Consensus        32 a~E~gd~~~V~k~l~~~~~~~lninc~-d~lG-r~al~iai-~------nenle~~eLLl~~~--~~~-------gdALL   93 (822)
T KOG3609|consen   32 AHENGDVPLVAKALEYKAVSKLNINCR-DPLG-RLALHIAI-D------NENLELQELLLDTS--SEE-------GDALL   93 (822)
T ss_pred             HHHcCChHHHHHHHHhccccccchhcc-ChHh-hhceeccc-c------cccHHHHHHHhcCc--ccc-------chHHH
Confidence            567899999999999844   367888 9999 99999999 9      99999999999987  222       35899


Q ss_pred             HHHHcCCHHHHHHHHhcCCCC---------CccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 014730           78 FCAAKGNLKALKVLLKYNPDL---------TNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI  134 (419)
Q Consensus        78 ~A~~~g~~~~~~~Ll~~~~~~---------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~  134 (419)
                      .|+..|..++|+.++.+...-         ....-..+.||+.+||...+.||++.|+.+|+.+-.
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            999999999999999994331         012223578999999999999999999999987544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.10  E-value=8.8e-06  Score=77.06  Aligned_cols=80  Identities=15%  Similarity=0.148  Sum_probs=67.2

Q ss_pred             CChHHHHHHHH-hCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcC
Q 014730            5 NDWPGVEDFVT-NHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKG   83 (419)
Q Consensus         5 g~~~~v~~ll~-~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g   83 (419)
                      .+.+.+...+. +-...++.+ |..| .||||+|+ .      .|+.+.++.|+..|  +++..+|+.|++|||-|+..|
T Consensus        31 ~~~~sl~~el~~~~~~~id~~-D~~g-~TpLhlAV-~------Lg~~~~a~~Ll~a~--Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   31 TDSDSLEQELLAKVSLVIDRR-DPPG-RTPLHLAV-R------LGHVEAARILLSAG--ADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cchhhHHHHHhhhhhceeccc-cCCC-CccHHHHH-H------hcCHHHHHHHHhcC--CCccccccccccHHHHHHHcC
Confidence            44444444332 235567777 9999 99999999 9      99999999999999  999999999999999999999


Q ss_pred             CHHHHHHHHhcC
Q 014730           84 NLKALKVLLKYN   95 (419)
Q Consensus        84 ~~~~~~~Ll~~~   95 (419)
                      +.+++..++.+.
T Consensus       100 ~~q~i~~vlr~~  111 (560)
T KOG0522|consen  100 NEQIITEVLRHL  111 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            999988887774

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.04  E-value=1.3e-05  Score=72.76  Aligned_cols=66  Identities=15%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             HHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCC-CCchH
Q 014730           33 IFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS-DGYLP  109 (419)
Q Consensus        33 ~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-~g~t~  109 (419)
                      -|+.|| +      .|+++-|++|++.|  .++|..|...++||.+|+..||.+++++|+++|+-  +.++. +|...
T Consensus        39 elceac-R------~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi--C~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEAC-R------AGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI--CSRDTFDGDRC  105 (516)
T ss_pred             HHHHHh-h------cccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc--ccccccCcchh
Confidence            456666 5      99999999999999  99999999999999999999999999999999985  45554 56554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.88  E-value=3.7e-05  Score=69.86  Aligned_cols=73  Identities=19%  Similarity=0.184  Sum_probs=62.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHH
Q 014730           73 HTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFL  147 (419)
Q Consensus        73 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a  147 (419)
                      .--|..||+.|+.+.+++|++.|.+ +|..|.....||.+|+..||.+++++|+++|+-... ....|...++-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r-dtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR-DTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc-cccCcchhhhhh
Confidence            4468899999999999999999998 899999999999999999999999999999986665 455666665433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.88  E-value=1.6e-05  Score=81.72  Aligned_cols=84  Identities=26%  Similarity=0.349  Sum_probs=51.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHc
Q 014730           71 HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAA  150 (419)
Q Consensus        71 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~  150 (419)
                      .|.|+||.|+..|..-+..+|++.|++ ++..+..|.||+|.+...|+...+..|+++|++.+. .+..|.+|+.+|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a-~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA-FDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccccccccc-cCccCcchhhHHhhh
Confidence            456666666666666666666666666 566666666666666666666666666666666666 666666666666444


Q ss_pred             CcHHHH
Q 014730          151 NLYDVA  156 (419)
Q Consensus       151 ~~~~~~  156 (419)
                      .+.+++
T Consensus       733 ~~~d~~  738 (785)
T KOG0521|consen  733 ANADIV  738 (785)
T ss_pred             ccccHH
Confidence            443333

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.80  E-value=2.2e-05  Score=80.74  Aligned_cols=88  Identities=24%  Similarity=0.274  Sum_probs=79.8

Q ss_pred             CCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC
Q 014730           27 EPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDG  106 (419)
Q Consensus        27 ~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g  106 (419)
                      ..| .|+||.|+ .      .|..-.++.|+++|  +++|..|..|.||+|.+...|+...+..|++.|++ .+..+.+|
T Consensus       654 ~~~-~s~lh~a~-~------~~~~~~~e~ll~~g--a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~  722 (785)
T KOG0521|consen  654 CIG-CSLLHVAV-G------TGDSGAVELLLQNG--ADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDG  722 (785)
T ss_pred             hcc-cchhhhhh-c------cchHHHHHHHHhcC--CcchhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccC
Confidence            457 89999999 9      99999999999999  88999999999999999999999999999999999 79999999


Q ss_pred             chHHHHHHHcCCHHHHHHH
Q 014730          107 YLPVHNAAYYGHKDTFQYL  125 (419)
Q Consensus       107 ~t~L~~A~~~g~~~~~~~L  125 (419)
                      .+|+++|....+.+++-++
T Consensus       723 ~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  723 KLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cchhhHHhhhccccHHHHH
Confidence            9999999777655554443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.39  E-value=0.00042  Score=57.28  Aligned_cols=70  Identities=13%  Similarity=0.125  Sum_probs=64.4

Q ss_pred             CcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 014730           18 PDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPD   97 (419)
Q Consensus        18 ~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~   97 (419)
                      +.++|++ |..| -|+++.|+ .      .|..+.+.+|+.+| -+.+.+.|..|.+++.+|-+.|+.+++..|.+...+
T Consensus         2 e~~in~r-D~fg-WTalmcaa-~------eg~~eavsyllgrg-~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINAR-DAFG-WTALMCAA-M------EGSNEAVSYLLGRG-VAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccch-hhhc-chHHHHHh-h------hcchhHHHHHhccC-cccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3578999 9999 99999999 9      99999999999999 567888999999999999999999999999998554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.33  E-value=0.00025  Score=72.90  Aligned_cols=131  Identities=11%  Similarity=0.053  Sum_probs=96.6

Q ss_pred             HHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCchHHHHHHHcCCHHHHHH-HHhcCC
Q 014730           53 LDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKY-NPDLTNIRDSDGYLPVHNAAYYGHKDTFQY-LLEATN  130 (419)
Q Consensus        53 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~-Ll~~g~  130 (419)
                      ...++..............|.|.+|.++..+..-++..+++- +.. ....+.+|...+|+++.. +.+.+-+ ..-.|.
T Consensus       555 ~~r~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hfca~l-g~ewA~ll~~~~~~  632 (975)
T KOG0520|consen  555 AYRLLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHFCAAL-GYEWAFLPISADGV  632 (975)
T ss_pred             HHHHHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhHhhhc-CCceeEEEEeeccc
Confidence            333444332233455677899999999999999999999885 443 567788888888985554 4554444 445677


Q ss_pred             CCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcC-----CCCCCCcHHHHHHhCCC
Q 014730          131 GVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRD-----NIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       131 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~g~~~l~~a~~~~~  186 (419)
                      .++. +|..|+||||+|+..|+..++..|...|++....     ....|.|+-..+..++.
T Consensus       633 ai~i-~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~  692 (975)
T KOG0520|consen  633 AIDI-RDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGH  692 (975)
T ss_pred             cccc-ccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccc
Confidence            8888 9999999999999999999999999888654433     33458888888876654

>smart00248 ANK ankyrin repeats

Probab=96.59  E-value=0.0041  Score=34.28  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=10.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCC
Q 014730          107 YLPVHNAAYYGHKDTFQYLLEATN  130 (419)
Q Consensus       107 ~t~L~~A~~~g~~~~~~~Ll~~g~  130 (419)
                      .||+|+|+..++.+++++|++.|.
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC
Confidence            344444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.43  E-value=0.0043  Score=58.87  Aligned_cols=64  Identities=11%  Similarity=-0.020  Sum_probs=54.5

Q ss_pred             CHHHHHHHHhcCCCCccc-----cCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 014730          118 HKDTFQYLLEATNGVDIY-----RGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLS  182 (419)
Q Consensus       118 ~~~~~~~Ll~~g~~~~~~-----~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  182 (419)
                      -...+++|.+++.+.|..     .+.--.|+||+|+..|..+++.+||+.|+++. .+|..|+||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~-~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS-TKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch-hcccCCCCcccccc
Confidence            366789999999888775     23346799999999999999999999999888 89999999998765

>smart00248 ANK ankyrin repeats

Probab=96.28  E-value=0.0081  Score=33.00  Aligned_cols=27  Identities=37%  Similarity=0.618  Sum_probs=24.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCC
Q 014730           71 HGHTAVIFCAAKGNLKALKVLLKYNPD   97 (419)
Q Consensus        71 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~   97 (419)
                      .|.||+|+|+..++.++++.|++++.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478999999999999999999999876

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.49  E-value=0.019  Score=54.68  Aligned_cols=50  Identities=18%  Similarity=0.184  Sum_probs=41.8

Q ss_pred             hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHH
Q 014730          318 SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFN  368 (419)
Q Consensus       318 ~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~  368 (419)
                      .|+||+|+.+|.-++|.+||.. |+|+-..|..|+||..++....-.+++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~nkdVk~~F~  480 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSANKDVKSIFI  480 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccccHHHHHHHH
Confidence            8999999999999999999999 8999999999999998887444334443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.11  E-value=0.11  Score=44.55  Aligned_cols=108  Identities=14%  Similarity=0.086  Sum_probs=74.3

Q ss_pred             CchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCC----CCchHHHHHHH--cCCHH
Q 014730           47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS----DGYLPVHNAAY--YGHKD  120 (419)
Q Consensus        47 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~----~g~t~L~~A~~--~g~~~  120 (419)
                      ..+.+-+.-++...         ..-.+++-+|...+..+++-+|+.+-..  ..+|.    .+.--+-++..  ..+..
T Consensus       163 AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f~f--t~~dv~~~~~~~ydieY~LS~h~a~~k  231 (284)
T PF06128_consen  163 ASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKFNF--TKQDVASMEKELYDIEYLLSEHSASYK  231 (284)
T ss_pred             hcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhcce--ecchhhhcCcchhhHHHHHhhcCCcHH
Confidence            55555554444433         1235788888888889999999987221  11121    12223444433  34788


Q ss_pred             HHHHHHhcCC-CCccc--cCCCCCcHHHHHHHcCcHHHHHHHHhhCCC
Q 014730          121 TFQYLLEATN-GVDIY--RGNDGAMVLLFLIAANLYDVALDLLKLHPT  165 (419)
Q Consensus       121 ~~~~Ll~~g~-~~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  165 (419)
                      ++++.+++|. ++|..  +-..|.|.|.-|.+.++.+++.+|++.|+.
T Consensus       232 vL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  232 VLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999995 55553  456799999999999999999999999974

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.68  E-value=0.2  Score=43.10  Aligned_cols=91  Identities=14%  Similarity=0.135  Sum_probs=69.5

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccC----CCCChHHHHHHH--cCCHHHHHHHHhcCCCCCcc---
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD----NHGHTAVIFCAA--KGNLKALKVLLKYNPDLTNI---  101 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~----~~g~t~L~~A~~--~g~~~~~~~Ll~~~~~~~~~---  101 (419)
                      .+++-+|. .      .+..+++.+|+++.   +...+|    ..+..-+.++..  +.+..++.++++.|-..+|.   
T Consensus       180 ~~Am~~si-~------~~K~dva~~lls~f---~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~  249 (284)
T PF06128_consen  180 HQAMWLSI-G------NAKEDVALYLLSKF---NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQ  249 (284)
T ss_pred             HHHHHHHh-c------ccHHHHHHHHHhhc---ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhh
Confidence            57888888 8      99999999999987   222222    235556666654  34567899999998443443   


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q 014730          102 RDSDGYLPVHNAAYYGHKDTFQYLLEATNG  131 (419)
Q Consensus       102 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~  131 (419)
                      +-.+|.|.|.-|.++++.+++.+|+++|+-
T Consensus       250 ~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  250 KVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             ccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            345899999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.96  E-value=0.72  Score=38.51  Aligned_cols=44  Identities=23%  Similarity=0.135  Sum_probs=24.2

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730          110 VHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus       110 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      |..|+..|-.+.+.-.+++|.+++.       ++|..|+..++-.++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHhh
Confidence            4455555666655555555544321       4556666666655555554

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.89  E-value=0.23  Score=35.48  Aligned_cols=48  Identities=13%  Similarity=0.148  Sum_probs=40.9

Q ss_pred             hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          318 SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       318 ~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                      ...+..|+..|+.|+++.+++. + .++      ...+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~-~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKK-N-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHH-h-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4578999999999999999977 3 221      4679999999999999999998

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.67  E-value=1.8  Score=36.17  Aligned_cols=48  Identities=17%  Similarity=0.176  Sum_probs=41.9

Q ss_pred             hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhh
Q 014730          318 SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQG  372 (419)
Q Consensus       318 ~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~  372 (419)
                      ..-|..|+..|-+..|...|+. |.+++.      ++|..|++++|..|+.+++.
T Consensus       144 ~~hl~~a~~kgll~F~letlky-gg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  144 TQHLEKAAAKGLLPFVLETLKY-GGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHc-CCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            5678899999999999999999 776643      79999999999999999874

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.16  E-value=1.2  Score=31.62  Aligned_cols=47  Identities=17%  Similarity=0.241  Sum_probs=28.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q 014730           74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA  128 (419)
Q Consensus        74 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~  128 (419)
                      ..+..|+.+|+.|+++.+++.+..        ....+..|+..=+-++++||+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            456666777777777766654421        13356666666666667776665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	419
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		8e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		9e-04

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G+T +   A +G+L+ ++VLLK   D+ N +D DGY P+H AA  GH +  + LL+
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 128 ATNGVDI 134
           A  G D+
Sbjct: 102 A--GADV 106

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G+T +   A +G+L+ ++VLLK   D+ N +D DGY P+H AA  GH +  + LL+
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 128 ATNGVDI 134
           A  G D+
Sbjct: 90  A--GADV 94

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G+T +   A +G+L+ ++VLLK   D+ N +D DGY P+H AA  GH +  + LL+
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 128 ATNGVDI 134
           A  G D+
Sbjct: 90  A--GADV 94

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           DN G T +   A  G+L+ ++VLLK+  D+ +  D  GY P+H AAY+GH +  + LL+ 
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLK- 101
Query: 129 TNGVDIYRGNDGAMVLLFLIA 149
            NG D+   +   M  L L A
Sbjct: 102 -NGADVNAMDSDGMTPLHLAA 121

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           DN+G T +   A  G+L+ ++VLLK+  D+ N +D +G+ P+H AAY GH +  + LL+
Sbjct: 77  DNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLK 134

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
           R    G TA+   AAKG  + LK+L++   D+ NI+D DG+ P+H AA++G ++  + L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 127 E 127
           E
Sbjct: 253 E 253

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D+ G T +   A KG+L+ ++VLLK+  D+ N  D  G  P+H AA YGH +  + LL+
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 128 ATNGVDI 134
             NG D+
Sbjct: 102 --NGADV 106

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D +G T +   A  G+L+ +K+LL+   D+ N +D +G  P+H AA  GH +  + LLE
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 128 ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKL 162
           A  G D+   +      L L A N +   L+++KL
Sbjct: 90  A--GADVNAKDKNGRTPLHLAARNGH---LEVVKL 119

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           D+ G T +   A  G+ + +K+LL    D  N +DSDG  P+H AA  GHK+  + LL  
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLL-- 90
Query: 129 TNGVDIYRGNDGAMVLLFLIAANLYDVALDLL 160
           + G D    +      L L A N +   + LL
Sbjct: 91  SQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           DN G+T +   A+ G+L+ ++VLLK   D+ N  D  G  P+H AA  GH +  + LL+ 
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 129 TNGVDIYRGNDG 140
              V+ Y  NDG
Sbjct: 103 GADVNAYD-NDG 113

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           D++G T +   AA G L+ ++VLLK   D+ N  DS G  P+H AAY GH +  + LL+ 
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 129 TNGVDIY 135
              V+ Y
Sbjct: 95  GADVNAY 101

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           D+ G T +   A  G+ + +K+L+    D+ N +DSDG  P+H+AA  GHK+  + L+  
Sbjct: 34  DSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLI-- 90
Query: 129 TNGVDIYRGNDGAMVLLFLIAANLYDVALDLL 160
           + G D+   +      L   A N +   + LL
Sbjct: 91  SKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           D +G T +   A+ G+L+ ++VLLKY  D+ N +D+ G  P++ AAY+GH +  + LL+ 
Sbjct: 65  DTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK- 122
Query: 129 TNGVDI 134
            +G D+
Sbjct: 123 -HGADV 127

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 54  DKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNA 113
           D L    DP      D+ G T + + A  G+ + +K+LL    D  N +DSDG  P+H A
Sbjct: 22  DLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYA 77
Query: 114 AYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL 160
           A  GHK+  + LL  + G D    +      L   A N +   + LL
Sbjct: 78  AENGHKEIVKLLL--SKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           D+ G T + + A +G+ + +K+L+    D+ N +DSDG  P+H AA  GHK+  + L+  
Sbjct: 34  DSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLI-- 90
Query: 129 TNGVDI-YRGNDGAMVLLF 146
           + G D+  + +DG   L +
Sbjct: 91  SKGADVNAKDSDGRTPLHY 109

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D+ G T +   A +G+L+ ++VLLK   D+ N  DS G+ P+H AA  GH +  + LL+
Sbjct: 76  KDSLGVTPLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 128 ATNGVDI 134
             NG D+
Sbjct: 135 --NGADV 139

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D +G T +   A  G+L+ +K+LL+   D+ N +D +G  P+H AA  GH +  + LLE
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 128 A 128
           A
Sbjct: 90  A 90

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           D+ G T +   A  G+L+ ++VLLK   D+ N  D +G+ P+H AA +GH +  + LL+ 
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK- 134
Query: 129 TNGVDI 134
            NG D+
Sbjct: 135 -NGADV 139

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D +G T +    A G+L+ ++VLLK   D+ N  D+ G+ P+H AA+ GH +  + LL+
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 128 ATNGVDI 134
             +G D+
Sbjct: 102 --HGADV 106

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           D  G T +   A +G+L+ ++VLLKY  D+ N  D  GY P+H AA  GH +  + LL+
Sbjct: 77  DKSGWTPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLK 134

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 18/100 (18%)
Query: 75  AVIFCAAK-GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD 133
           AVI  AA+ G L  L+ LL++  D+ NI D++G LP+H AA  GH    ++L++ T    
Sbjct: 72  AVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 134 IYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDS 173
            +R + G             D A DL +L+   GR+ + S
Sbjct: 131 GHRNHKG-------------DTACDLARLY---GRNEVVS 154

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           D+ G T +   A +G+L+ ++VLLK+  D+ N RD  G  P+H AA  GH +  + LLE
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D+ G T +   A  G+ + ++VLLK+  D+ N RD+DG+ P+H AA  GH +  + LL+
Sbjct: 43  HDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLK 101

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           D+ G T +   A +G+L+ ++VLLK+  D+ N  DS G  P+H AA  GH +  + LLE
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLE 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	419
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
2rfa_A	232	Transient receptor potential cation channel subfa	6e-09
2rfa_A	232	Transient receptor potential cation channel subfa	9e-07
2rfa_A	232	Transient receptor potential cation channel subfa	2e-06
2rfa_A	232	Transient receptor potential cation channel subfa	3e-06
2rfa_A	232	Transient receptor potential cation channel subfa	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	7e-06
2etb_A	256	Transient receptor potential cation channel subfam	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	6e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-07
2pnn_A	273	Transient receptor potential cation channel subfa	3e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-07
2pnn_A	273	Transient receptor potential cation channel subfa	8e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-05

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           +   +     ++  A  G    +++L+    D+   +D +G  P+H AA  GH +  + L
Sbjct: 18  SHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLL 76

Query: 126 LEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLK 161
           LE   G D+   +        +   N  +   ++L+
Sbjct: 77  LE--AGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.3 bits (150), Expect = 2e-11
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D +G T +++     ++K ++ LL    DL       GY P+  A   G++   Q +  
Sbjct: 98  YDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIEN 156

Query: 128 ATNGVDIY-RGNDG 140
             + + ++      
Sbjct: 157 --HILKLFQSNLVP 168

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.3 bits (150), Expect = 2e-11
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 52  LLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVH 111
            L K    V+     + D  G T +I+ +A G ++ ++ LL++  D  +I   +    + 
Sbjct: 21  HLRKGDNLVN-----KPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALS 74

Query: 112 NAAYYGHKDTFQYLLEATNGVDI-YRGNDG 140
            A+  G+ D    LLE    VDI     +G
Sbjct: 75  LASTGGYTDIVGLLLE--RDVDINIYDWNG 102

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.4 bits (145), Expect = 9e-11
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
                 +A+   +  G    + +LL+ + D+ NI D +G  P+  A    H    + LL 
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLA 123

Query: 128 ATNGVDI-YRGNDG 140
              G D+    + G
Sbjct: 124 --RGADLTTEADSG 135

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 72  GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
              ++   AA+G L  LK  L+   +L N  D  G+ P+  A+ +G  +T ++LLE   G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE--WG 59

Query: 132 VDI-YRGNDG 140
            D      + 
Sbjct: 60  ADPHILAKER 69

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.4 bits (158), Expect = 2e-11
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            +  G T +   A +G++    VL+K+   + +     GY P+H A++YG+    ++LL+
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQ 332

Query: 128 ATNGVDI-YRGNDG 140
             +  D+  +   G
Sbjct: 333 --HQADVNAKTKLG 344

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 4e-11
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +     T +   A  G+   +K+LL+ N +  N+  + G+ P+H AA  GH +T   LLE
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLE 134

Query: 128 ATNGVDI-YRGNDG 140
                        G
Sbjct: 135 --KEASQACMTKKG 146

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.9 bits (154), Expect = 6e-11
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
               GHT +   A +G+++ +  LL+            G+ P+H AA YG     + LLE
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLE 167

Query: 128 ATNGVDIY-RGNDGAMVLLFLIAANLYDVALDLLK 161
                     G +G   L   +  N  D+   LL 
Sbjct: 168 --RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
               G+T +   +  GN+K +K LL++  D+ N +   GY P+H AA  GH D    LL+
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK 365

Query: 128 ATNGVDIY-RGNDG 140
             NG       +DG
Sbjct: 366 --NGASPNEVSSDG 377

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            +    T +   A  G+ +  K LL+    + N +  D   P+H AA  GH +  + LLE
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLE 101

Query: 128 ATNGVDI-YRGNDG 140
             N  +       G
Sbjct: 102 --NNANPNLATTAG 113

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.8 bits (146), Expect = 5e-10
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
              +G+T +   A +  ++  + LL+Y     N     G  P+H AA  GH +    LL 
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLS 266

Query: 128 ATNGVDI-YRGNDG 140
                +       G
Sbjct: 267 --KQANGNLGNKSG 278

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
              +G T +       NL  +K+LL       +    +GY P+H AA     +  + LL+
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQ 233

Query: 128 ATNGVDI-YRGNDG 140
              G         G
Sbjct: 234 --YGGSANAESVQG 245

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
            +   G++ +   A +G+   + +LLK      N   SDG  P+  A   G+      L 
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLK 397

Query: 127 EAT-NGVDIYRGND 139
             T     +   + 
Sbjct: 398 VVTDETSFVLVSDK 411

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +   G T +   A +G+ + + +LL    +  N+ +  G  P+H  A  GH      L++
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIK 299

Query: 128 ATNGVDI-YRGNDG 140
             +GV +      G
Sbjct: 300 --HGVMVDATTRMG 311

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.1 bits (139), Expect = 4e-09
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
               G T +   +  G+L  +K LL+      N+ +     P+H AA  GH +  +YLL+
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 128 ATNGVDI-YRGNDG 140
             N   +  +  D 
Sbjct: 69  --NKAKVNAKAKDD 80

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 60.5 bits (148), Expect = 3e-11
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 45  DSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS 104
           D  E   LL +     D       +  G TA+      G+      LLK      N++D+
Sbjct: 14  DVQEVRRLLHRELVHPD-----ALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDT 66

Query: 105 DGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
            G  PVH+AA  G  DT + L+E  +G D+
Sbjct: 67  SGTSPVHDAARTGFLDTLKVLVE--HGADV 94

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 60.1 bits (147), Expect = 4e-11
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           QD  G + V   A  G L  LKVL+++  D+ N+ D  G LP+H A   GH     +L  
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 128 ATNGVDI-YRGNDG 140
                D+  R   G
Sbjct: 123 ---ESDLHRRDARG 133

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D  G   +     +G+   +  L     DL + RD+ G  P+  A   G +D    L  
Sbjct: 97  PDGTGALPIHLAVQEGHTAVVSFLAA-ESDL-HRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.1 bits (108), Expect = 5e-06
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 72  GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
               +   AA+G+++ ++ LL       +  +  G   +     +G       LL+   G
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLK--QG 58

Query: 132 VDI 134
              
Sbjct: 59  ASP 61

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.5 bits (153), Expect = 4e-11
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
           R    G TA+   AAKG  + LK+L++   D+ NI+D DG+ P+H AA++G ++  + L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 127 EATNGVDI-YRGNDGAMVLLFLIAA-NLYDVALDLLKLH 163
           E  N  D+      G       +A  ++     +L K  
Sbjct: 253 E--NLCDMEAVNKVGQTAF--DVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            +  G TA+       N+  +K L++   ++ N  D++G++P+H AA  G+ D  +YL+ 
Sbjct: 69  ANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLIS 127

Query: 128 ATNGVDIYRGN-DGAMVL 144
              G  +   N +G   L
Sbjct: 128 --QGAHVGAVNSEGDTPL 143

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
           + RQ      A           A + L   + +        G   +H AA  G+ +  + 
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 125 LLEATNGVDI-YRGNDG 140
           L++     D+  +  DG
Sbjct: 218 LIQ--ARYDVNIKDYDG 232

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           + + G    +   + G+ + +  LL+   D+ N  + DG   +H A    + D  ++L+E
Sbjct: 37  KFDDG-AVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 128 ATNGVDI 134
             NG +I
Sbjct: 95  --NGANI 99

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 10/75 (13%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            ++ G T +     +   + L+  +       N +  D             +D  Q+L  
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEV-------NRQGVDIEAARKEEERIMLRDARQWLNS 187

Query: 128 ATNGVDIYRG-NDGA 141
               ++  R    G 
Sbjct: 188 --GHINDVRHAKSGG 200

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 58.9 bits (144), Expect = 4e-11
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
               G   + + A  G L+ L+ LL    D+ N  D     P+ +A Y GH    + LL 
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 128 ATNGVDIY-RGNDGAMVLLFLIAANLYDVALDLLK 161
              G D   +G DG        A +   +   LL+
Sbjct: 95  --KGADKTVKGPDGLTA---FEATDNQAI-KALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
               +      ++    G+L  +K  +    D+ N     G  P+H AA  G  +  ++L
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 126 LEATNGVDI-YRGNDG 140
           L    G DI       
Sbjct: 60  LL--KGADINAPDKHH 73

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.1 bits (147), Expect = 5e-11
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
                 +A+    +KG    +K+LL    D+ N  D +G  P+  A +  H    + LLE
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE 123

Query: 128 ATNGVDI-YRGNDG 140
             +G D     + G
Sbjct: 124 --SGADPTIETDSG 135

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 58.9 bits (144), Expect = 1e-10
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D  G T +++ AA G +  ++ LL+   D   +        +  A   G+ D  + LL+
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLD 90

Query: 128 ATNGVDI-YRGNDG 140
              GVD+     +G
Sbjct: 91  --CGVDVNEYDWNG 102

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 58.9 bits (144), Expect = 1e-10
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 71  HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN 130
               +V   AA+G +  L   ++    + N  D +G+ P+  AA +G     ++LL+  N
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQ--N 58

Query: 131 GVDIY-RGNDG 140
           G D    G   
Sbjct: 59  GADPQLLGKGR 69

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D +G T +++     ++K +K+LL+   D   I    GY  +  A   G++   Q +  
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES 156

Query: 128 ATNGVDI 134
             + + +
Sbjct: 157 --HLLKL 161

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.0 bits (144), Expect = 5e-11
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           ++ G T +   + KG++ +++ LL+   D  N++D  G+ P+H A  +GH    + LL+ 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQ- 64

Query: 129 TNGVDI-YRGNDG 140
            +   +   G   
Sbjct: 65  -HKALVNTTGYQN 76

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D+ G T +      G+LK +++LL++   + N        P+H+AA  GH D  + LL 
Sbjct: 39  KDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

Query: 128 ATNGVDIY-RGNDGAMVLLFLIAANLYDVALDLLK 161
              G         G   + +    ++  + L   K
Sbjct: 98  --YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.1 bits (147), Expect = 6e-11
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 47  DEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDG 106
                 LD     ++     + D+HG + + +   +G    +++L+     + N+ +   
Sbjct: 19  VAVRLWLDNTENDLN-----QGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGD 72

Query: 107 YLPVHNAAYYGHKDTFQYLLEATNGVDI 134
             P+H AA +GH+D  Q LL+     DI
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQ--YKADI 98

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.2 bits (142), Expect = 3e-10
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
                  +     +GN  A+++ L    +  N  D  G+ P+H A   G     + L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM- 60

Query: 129 TNGVDIYRGNDG 140
             G  I   N G
Sbjct: 61  -RGARINVMNRG 71

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            +    T +   A+ G+   ++ LL+Y  D+ N  +  G +P+H A ++G     + L+ 
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA 126

Query: 128 ATNGVDIYRGND 139
             NG  +   N 
Sbjct: 127 --NGALVSICNK 136

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            + HG+  + +    G  +  + L+     + +I +  G +PV  A     +   +   +
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK 159

Query: 128 ATNGVDI 134
              G ++
Sbjct: 160 --MGQNL 164

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.5 bits (143), Expect = 6e-11
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +   G+T +   A  G+ + +K+LL    D+ N R  DG  P H A   GH +  + L  
Sbjct: 38  RSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDA 96

Query: 128 ATNGVDI-YRGNDG 140
              G D+  R    
Sbjct: 97  --KGADVNARSWGS 108

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.8 bits (136), Expect = 5e-10
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
              G+T +   A  G+ + +K LL    D+ N R  DG  P+H AA  GH +  + LL  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA- 63

Query: 129 TNGVDI 134
             G D+
Sbjct: 64  -KGADV 68

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI-YRGNDG 140
                DG  P+HNAA  GH +  + LL    G D+  R  DG
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDG 42

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.1 bits (142), Expect = 9e-11
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D +G T +   A  G+L+ +K+LL+   D+ N +D +G  P+H AA  GH +  + LLE
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 128 ATNGVDI 134
              G D+
Sbjct: 90  --AGADV 94

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 54.7 bits (133), Expect = 1e-09
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D +G T +   A  G+L+ +K+LL+   D+ N +D +G  P+H AA  GH +  + LLE
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122

Query: 128 A 128
           A
Sbjct: 123 A 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 51.2 bits (124), Expect = 2e-08
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 71  HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN 130
           +G T +   A  G+L+ +K+LL+   D+ N +D +G  P+H AA  GH +  + LLE   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE--A 57

Query: 131 GVDI-YRGNDG 140
           G D+  +  +G
Sbjct: 58  GADVNAKDKNG 68

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.0 bits (139), Expect = 1e-10
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D +G T +   A  G+L+ +K+LL+   D+ N +D +G  P+H AA  GH +  + LLE
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 128 A 128
           A
Sbjct: 90  A 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.8 bits (123), Expect = 1e-08
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 71  HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN 130
           +G T +   A  G+L+ +K+LL+   D+ N +D +G  P+H AA  GH +  + LLE   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE--A 57

Query: 131 GVDI-YRGNDG 140
           G D+  +  +G
Sbjct: 58  GADVNAKDKNG 68

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 58.5 bits (143), Expect = 1e-10
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           Q+  G TA+      GN +  + LL    +  +++D  G+  +H+AA  G  DT Q LLE
Sbjct: 34  QNGFGRTALQ-VMKLGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLE 91

Query: 128 ATNGVDI 134
                D+
Sbjct: 92  --FQADV 96

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 56.2 bits (137), Expect = 8e-10
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G   +   A  G L  L+ LL++  D+ NI D++G LP+H AA  GH    ++L++
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124

Query: 128 --ATN 130
             A+N
Sbjct: 125 HTASN 129

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +DN G+  +   A +G+L+ ++ L+K+       R+  G      A  YG  +    +  
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.8 bits (110), Expect = 4e-06
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
                  +   AA+G+L+ L  LL+ N ++ N ++  G   +      G+ +  + LL  
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLL- 58

Query: 129 TNGVDI-YRGNDGAMVL 144
             G +   +   G  V+
Sbjct: 59  -RGANPDLKDRTGFAVI 74

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           +  G TA+       N   +  L+    ++ N  DS G+ P+H AA          L++ 
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQ- 108

Query: 129 TNGVDIYR--GNDGAMVLLFLIAANLYDVALDLLKL 162
            +G  I+    +DGA            +   D    
Sbjct: 109 -HGAAIFATTLSDGATAF--EKCDPYREGYADCATY 141

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYY--GHKDTFQY 124
             D+HG T +   A+  +      L+++   +     SDG         Y  G+ D   Y
Sbjct: 82  SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY 141

Query: 125 LLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH 163
           L +      +   N GA+  L+  +A   D    L    
Sbjct: 142 LAD--VEQSMGLMNSGAVYALWDYSAEFGDE---LSFRE 175

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
           R   +    ++  A  G L+ ++  +K   D  +  + +G   +HNA    +     +L+
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLI 74

Query: 127 EATNGVDI 134
               G ++
Sbjct: 75  T--AGANV 80

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKD 120
            ++    A ++  +      L      +  +   RD         AA +G + 
Sbjct: 152 MNSGAVYA-LWDYSAEFGDELSFREGESVTV-LRRDGPEETDWWWAALHGQEG 202

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 3/76 (3%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           Q+  G TA+   A KG    +++LL       ++R+ +  L    A         +    
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQG 194

Query: 128 ATNGVDIYRGNDGAMV 143
                     N    +
Sbjct: 195 T--DAVRTLSNAEDYL 208

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           Q       +   A +GNL  L+  L     + N  D  G   ++ A + GHKD  + L  
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLF- 126

Query: 128 ATNGVDI 134
               +++
Sbjct: 127 TQPNIEL 133

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLL-KYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
            D  G TA+ +    G+   +++L  + N +L N ++  G   +H AA+ G+ D  Q LL
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLL 160

Query: 127 EATNGVDIY-RGNDG 140
               G     R  + 
Sbjct: 161 A--KGARTDLRNIEK 173

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
             +   T      +KG    +             +      P+H AA  G+    +  L+
Sbjct: 41  ITDMSDTNWWKGTSKGRTGLIPSNY------VAEQAESIDNPLHEAAKRGNLSWLRECLD 94

Query: 128 ATNGVDI 134
             N V +
Sbjct: 95  --NRVGV 99

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGH 118
           ++     A            LK     +     + +++ YL   ++    H
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQGTDAVR-TLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 5/53 (9%), Positives = 7/53 (13%), Gaps = 1/53 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKD 120
               G   V         +    L     D+                  G   
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTG 59

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            ++ G TA+      G+ + +K L+++  ++ N  DSDG+ P+H AA   +    ++L+E
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 128 ATNGVDIY-RGNDGAMVLLFLIAA 150
             +G  ++                
Sbjct: 125 --SGAAVFAMTYSDMQTAADKCEE 146

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKY--NPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
            D+ G T +   A+  N++  K L++           D             G+    Q+L
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 126 LEATNGVDIYRGNDGAMVLLFLIAAN 151
                   +   N G +  L+     
Sbjct: 159 YG--VQEKMGIMNKGVIYALWDYEPQ 182

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           +      ++  + +G    ++ ++    D  ++ + +G   +HNA   GH +  ++L++ 
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQ- 91

Query: 129 TNGVDIYRG-NDG 140
             GV++    +DG
Sbjct: 92  -FGVNVNAADSDG 103

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 4/71 (5%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           +  G  ++         K     + +   +    +      + +++  G  D  Q ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIY- 58

Query: 129 TNGVDIYRGND 139
               D    ND
Sbjct: 59  -EVDDPSLPND 68

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.8 bits (141), Expect = 3e-10
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G T +   A  G+L+ ++VLLK   D+ N  D  G  P+  AA +GH +  + LL+
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLK 101

Query: 128 ATNGVDI 134
             NG D+
Sbjct: 102 --NGADV 106

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 56.2 bits (137), Expect = 1e-09
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D+ G T +   A  G+L+ ++VLLK   D+ N  D +G+ P+H AA +GH +  + LL+
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK 134

Query: 128 ATNGVDI 134
             NG D+
Sbjct: 135 --NGADV 139

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 53.9 bits (131), Expect = 6e-09
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D  GHT +   A  G+L+ ++VLLK   D+ N +D  G      +   G++D  + L +
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.7 bits (128), Expect = 1e-08
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
                +     ++  A  G    +++L+    D+ N  D+ G+ P+H AA+ GH +  + 
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 125 LLEATNGVDIY-RGNDG 140
           LL+  NG D+    + G
Sbjct: 66  LLK--NGADVNAVDHAG 80

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.1 bits (139), Expect = 3e-10
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 68  QDNHGHTAVIFCAA-KGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
            D    T  +  AA +G L  L VL +    L ++RD+ G LPV  A   GH+D  +YL 
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLR 131

Query: 127 EATNGVDI 134
                   
Sbjct: 132 A--AAGGT 137

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
                  +   AA+G ++ ++ LL+   +  N  +S G  P+      G     + LL  
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMMM-GSARVAELLLL- 65

Query: 129 TNGVDI 134
            +G + 
Sbjct: 66  -HGAEP 70

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.8 bits (141), Expect = 4e-10
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G TA+I+      L   + LL    ++ N +D  G  P+  +  +G+ +   +LLE
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLE 122

Query: 128 ATNGVDI 134
             +G ++
Sbjct: 123 --HGANV 127

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.4 bits (140), Expect = 6e-10
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D++  T ++     G   A+  L++    L   +D +G   +  A         + LL 
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLS 89

Query: 128 ATNGVDIY-RGNDG 140
              G ++  +   G
Sbjct: 90  --KGSNVNTKDFSG 101

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 56.2 bits (137), Expect = 2e-09
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G T +++    G  +    LL++  ++ N R+ +G  P+  A+ YG  +  + LLE
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLE 155

Query: 128 ATNGVDI 134
              G DI
Sbjct: 156 --LGADI 160

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.9 bits (131), Expect = 8e-09
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           ++  G T +I  +  G  + +K LL+   D+ + RD  G     +A  +G ++  +   E
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIFTE 188

Query: 128 A 128
            
Sbjct: 189 V 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           +  D +G         K   + L  L        N RDS    P+  A   G ++    L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLR-------NYRDSYNRTPLMVACMLGMENAIDKL 54

Query: 126 LEATNGVDI 134
           +E  N   +
Sbjct: 55  VE--NFDKL 61

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.2 bits (142), Expect = 4e-10
 Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +       +     +   K  ++L      + +  D++G  P++ A +    +  + L++
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 128 ATNGVDIY-RGNDGAMVLLF 146
              G DI  + +      L+
Sbjct: 61  --RGADINLQNSISDSPYLY 78

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.8 bits (133), Expect = 6e-09
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           Q++   +  ++  A+G  + L  +LK+     N  +  G   +  AA  GH D  + LLE
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127

Query: 128 ATNGVDI-YRGNDG 140
                DI ++ + G
Sbjct: 128 DGR-EDIDFQNDFG 140

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D  G+T +       +++  K L+    D+ N+++S    P   A   G  +   Y+L+
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLK 93

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 48.6 bits (117), Expect = 8e-07
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 13/96 (13%)

Query: 51  CLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV 110
            +L      ++     + + +G  A+I  A KG++  +K+LL+   +  + ++  GY  +
Sbjct: 90  YMLKHATPDLN-----KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144

Query: 111 HNAAYY-----GHKDTFQYLLEATNGVDI-YRGNDG 140
             A         ++D  + L+E  NG D   + N G
Sbjct: 145 IEAVGLREGNQLYQDIVKLLME--NGADQSIKDNSG 178

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 68  QDNHGHTAVIFCAA------KGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDT 121
           Q++ G+TA+I  A       +     +K+L++   D  +I+D+ G   +  A   G+ + 
Sbjct: 136 QNDFGYTALI-EAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEI 193

Query: 122 FQYLLE 127
            + L +
Sbjct: 194 SKILAQ 199

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.4 bits (145), Expect = 4e-10
 Identities = 13/72 (18%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           ++   + +   A +G+++ +  L+ Y  ++ + + S    P++ A     +   + LLE 
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE- 211

Query: 129 TNGVDIYRGNDG 140
            +G D+ +G   
Sbjct: 212 -SGADVNQGKGQ 222

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.0 bits (144), Expect = 6e-10
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
                 + +      G+L  +K+LLK+   + N   +D + P+ NA   G  D    LL+
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQ 146

Query: 128 ATNGVDIYRGNDGAMVL 144
             +G  +   +D A  +
Sbjct: 147 --HGASVQPESDLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
                 + +   A  G+  +L+ L+     + NI  +D   P+H A   GH    + LL+
Sbjct: 55  DAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLK 113

Query: 128 ATNGVDI-YRGNDG 140
             +G  +     D 
Sbjct: 114 --HGAQVNGVTADW 125

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           + +H  T +           +K LL+   D+ N +      P+H       ++    L++
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMD 243

Query: 128 ATNGVDIYRGND 139
              G D    N 
Sbjct: 244 --FGADTQAKNA 253

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 49  ATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYL 108
           ++ L+ + +  +      +    G          G      + L  NP          + 
Sbjct: 11  SSGLVPRGS-HMASMDGKQGGMDGSKP------AGPRDFPGIRLLSNPL--MGDAVSDWS 61

Query: 109 PVHNAAYYGHKDTFQYLLEATNGVDI-YRGNDG 140
           P+H AA +GH+ + + L+    G  +     D 
Sbjct: 62  PMHEAAIHGHQLSLRNLIS--QGWAVNIITADH 92

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 58.6 bits (143), Expect = 4e-10
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           D++    ++     G  +  + L++   D+    D +    +H AA     D  +Y +  
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYIS- 63

Query: 129 TNGVDI 134
             G  +
Sbjct: 64  -KGAIV 68

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
               +   T + +   +G+L  +  L+KY  D  ++ D +G   +H AA +GH     YL
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYL 128

Query: 126 LEATNGVDI 134
           +    G D+
Sbjct: 129 IA--KGQDV 135

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
                H +TA+ +    GN   + +LL+   ++ + ++  G   +  A    +     +L
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHL 229

Query: 126 LE--ATNGVD 133
            E     G D
Sbjct: 230 QEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.8 bits (128), Expect = 4e-08
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 68  QDNHGHTAVIFCAAKGN-LKALKVLLKYNPDLTNIRD-SDGYLPVHNAAYYGHKDTFQYL 125
            D +G T +++ A + + +   ++LL +N  + N+ D       +H A   G+      L
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLL 196

Query: 126 LEATNGVDIYRGND 139
           LE   G ++   N 
Sbjct: 197 LE--AGANVDAQNI 208

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD-GYLPVHNAAYYGHKDTFQYLL 126
            D    T + + A    +  +K  +     + +    D    P+H A   GH      L+
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYYISKGAIV-DQLGGDLNSTPLHWATRQGHLSMVVQLM 96

Query: 127 EATNGVDI-YRGNDG 140
           +   G D      +G
Sbjct: 97  K--YGADPSLIDGEG 109

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGH-KDTFQYLL 126
            D  G + +   A  G+   +  L+    D+ ++ D +G  P+  AAY  H  D  + LL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLL 163

Query: 127 EATNGVDI 134
                V +
Sbjct: 164 T--FNVSV 169

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 3/42 (7%)

Query: 100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI-YRGNDG 140
              D      +  A  YG  +  + L+E   G D+     + 
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVE--AGYDVRQPDKEN 42

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.8 bits (146), Expect = 5e-10
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G   +    + G+ +  ++LLK+   + N  D   + P+H AA     +    LL 
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLS 145

Query: 128 ATNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLK 161
             +G D       G   +       L +      K
Sbjct: 146 --HGADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           ++    T +   A + +   ++VL K+   + N  DS G   +H AA  GH  T + LL 
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLS 301

Query: 128 ATNGVDI-YRGNDG 140
              G D       G
Sbjct: 302 --YGSDPSIISLQG 313

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D    T +   A    ++ +++LL++  D+ + +D  G +P+HNA  YGH +  + LL+
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLK 112

Query: 128 ATNGVDI 134
             +G  +
Sbjct: 113 --HGACV 117

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.7 bits (138), Expect = 5e-09
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKAL-KVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
              +    ++  A  GN + L  +L   N +  +  D     P+H AA Y      Q LL
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLL 78

Query: 127 EATNGVDI 134
           +  +G D+
Sbjct: 79  Q--HGADV 84

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.3 bits (137), Expect = 5e-09
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D    T +   A+K  ++   +LL +  D   + +  G   V  A     ++   Y  +
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFK 178

Query: 128 ATNGVDIYRGNDGAMVLLFLI 148
             + +   R  D A V   L 
Sbjct: 179 GHSLLQAAREADLAKVKKTLA 199

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 23/118 (19%)

Query: 37  IAELLVD----------DDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKG--- 83
                             D  +    L             +Q     TA+    A     
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINF------KQPQSHETALHCAVASLHPK 225

Query: 84  NLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI-YRGNDG 140
             +  ++LL+   ++ N ++ D   P+H AA   H D  + L +  +G  +    + G
Sbjct: 226 RKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHK--HGAKMNALDSLG 280

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D+ G TA+   A  G+L+  ++LL Y  D  +I    G+            +  Q +L 
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDP-SIISLQGFTAAQMGN-----EAVQQILS 329

Query: 128 ATNGVDI 134
                 +
Sbjct: 330 --ESTPM 334

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.9 bits (136), Expect = 7e-10
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 68  QDNHGHTAVIFCAA-KGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
            D    T  +  AA +G L  L VL +    L ++ D+ G LPV  A   GH+D  +YL 
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLH 131

Query: 127 EA 128
            A
Sbjct: 132 AA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 5/85 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
                   +   AA+G ++ ++ LL+   D  N  +  G  P+      G     + LL 
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMM-MGSAQVAELLLL 65

Query: 128 ATNGVDI-YRGNDGAMVLLFLIAAN 151
             +G +            +   A  
Sbjct: 66  --HGAEPNCADPATLTRPVHDAARE 88

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI-YRGNDG 140
           ++        +  AA  G  +T + LLE   G D       G
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLE--AGADPNALNRFG 45

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.8 bits (141), Expect = 7e-10
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKY--NPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           +D  G   + +  +    +    LL    N +L +  D  G+ P H A   G+ +  + L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

Query: 126 LEATNGVDI-YRGNDG 140
            +     D+    N G
Sbjct: 92  YDRPLKPDLNKITNQG 107

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D      +   A+ G+LK +++L        N +D  G+ P+ +A   GH D    L+E
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195

Query: 128 ATNGVDI 134
              G + 
Sbjct: 196 K-YGAEY 201

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
             N G T +     K   +  + L++    +  I+D    +P+H AA  G     + L  
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCG 161

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLL--KYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
             D+ G T      + GNL+ +K L      PDL N   + G   +H A      +  Q+
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQF 125

Query: 125 LLEATNGVDI 134
           L+E  NG  +
Sbjct: 126 LIE--NGASV 133

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 72  GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
            +  +     +     ++ LL   P L   +D DG +P+H +  +   +   +LL     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS--KM 59

Query: 132 VDI----YRGNDG 140
            ++    Y  + G
Sbjct: 60  ENVNLDDYPDDSG 72

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.9 bits (141), Expect = 9e-10
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D+ G +A+ + AA  N+ A  VLLK   +  +++++    P+  AA  G  +T + LL+
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD 211

Query: 128 ATNGVDI-YRGNDG 140
             +  +     +  
Sbjct: 212 --HFANRDITDHMD 223

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.9 bits (141), Expect = 9e-10
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
           +A     G         +     +   +     L N  D  G   +H AA Y   D  + 
Sbjct: 16  IASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR 75

Query: 125 LLEATNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSR 174
           LLE     D   + N G   L   ++A+   V   +L  +      ++D+R
Sbjct: 76  LLE--ASADANIQDNMGRTPLHAAVSADAQGVF-QILIRN---RATDLDAR 120

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           Q+N   T +   A +G+ +  KVLL +  +  +I D    LP   A    H D  + L  
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDL 244

Query: 128 ATNGVDIYRGN 138
                  +  +
Sbjct: 245 --EHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           + + G T +I  A       L+ L+  + D+ N  D  G   +H AA   + D    LL+
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK 178

Query: 128 ATNGVDI 134
             NG + 
Sbjct: 179 --NGANK 183

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 52.5 bits (127), Expect = 6e-08
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           QDN G T +    +       ++L++      + R  DG  P+  AA    +   + L+ 
Sbjct: 86  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145

Query: 128 ATNGVDI 134
             +  D+
Sbjct: 146 --SHADV 150

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.4 bits (140), Expect = 9e-10
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 51  CLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV 110
            LL      V+      QD+ G T +I+     ++  +K+LL    D+ NIRD++  + +
Sbjct: 95  YLLSNGQMDVN-----CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICL 148

Query: 111 HNAAYYGHKDTFQYLLEATNGVDIY-RGNDG 140
           H AA+ G  D  + LL      D++     G
Sbjct: 149 HWAAFSGCVDIAEILLA--AKCDLHAVNIHG 177

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.4 bits (140), Expect = 1e-09
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G T +   A KG+ + ++ LL       N +D  G+ P+  A  Y H D  + LL 
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132

Query: 128 ATNGVDI-YRGNDG 140
              G DI  R N+ 
Sbjct: 133 --KGSDINIRDNEE 144

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.0 bits (139), Expect = 1e-09
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +DN  +  + + A  G +   ++LL    DL +  +  G  P+H AA     D     L 
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLS 198

Query: 128 ATNGVDIYRGND 139
                D+   N 
Sbjct: 199 --RDSDVTLKNK 208

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.0 bits (139), Expect = 2e-09
 Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +  +  + +   A  G++    +L++   ++ +    D   P+  AA   H +  +YL++
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 128 ATNGVDIY-RGNDGAMVL 144
              G  +  +  +G+  L
Sbjct: 66  --AGALVDPKDAEGSTCL 81

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.5 bits (135), Expect = 5e-09
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
                 T ++  A   +L+A+K L+K    + + +D++G   +H AA  GH +  QYLL 
Sbjct: 40  CSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLS 98

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.7 bits (133), Expect = 9e-09
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            + HG + +   A +     + + L  + D+  +++ +G  P+  A+      +   + +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASLNSQVWSALQMSK 231

Query: 128 ATNGVD 133
           A    D
Sbjct: 232 A--LQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.1 bits (95), Expect = 7e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
            +   +   P+H AA  GH D    L++   G +I
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQ--AGANI 37

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 10/105 (9%), Positives = 25/105 (23%), Gaps = 8/105 (7%)

Query: 37  IAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNP 96
           + + L+          L +     +  T+          V   A     + L++L +   
Sbjct: 259 LTKELLQKTDV----FLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314

Query: 97  DLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI-YRGNDG 140
           ++     + G                +  L       +  R    
Sbjct: 315 EV-VRSLNTGAGGAVKRKKKAAPAVKRMKLA--PSAPVRTRSRSR 356

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D+     +   A KG    ++ L++       I++  G   +H A  +G  DT +YL  
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 128 ATNGVDI 134
              G   
Sbjct: 75  --VGEVH 79

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            +  G++ + +             ++   D+ N+ D++  +P++ +         + LL+
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQ 265

Query: 128 --ATNGVDIYRGNDGAMVL 144
                 +     ++G  VL
Sbjct: 266 KTDVFLIQACPYHNGTTVL 284

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 68  QDNHGHTAVIFCAAKGN--LKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           +   G TA+ +C   G   L+ +K+L++        +D     P+  A  + +++    +
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLM 192

Query: 126 LEAT---NGVDI-YRGNDG 140
           ++     + + + Y    G
Sbjct: 193 MDTVPSKSSLRLDYANKQG 211

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 10/89 (11%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           Q+  G TA+      G +   K L              G  P+H A      D    L+E
Sbjct: 49  QNRFGCTALHLACKFGCVDTAKYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVALVE 105

Query: 128 ATNGVDIYRGNDGAMVLLFLIAANLYDVA 156
                       G M    L   +  +V 
Sbjct: 106 GAK-------ERGQMPESLLNECDEREVN 127

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDL----TNIRDSDGYLPVHNAAYYGHKDTFQ 123
           +D    T ++      N +AL +++   P       +  +  G   +H A     +D   
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 124 YLLEATNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLK 161
             +E   G+D+    N+  + L   + A +  +  +LL+
Sbjct: 229 RFVE--MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 6/75 (8%), Positives = 19/75 (25%), Gaps = 12/75 (16%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYG--HKDTFQYLL 126
              G             +  ++         +++   G   +H     G  + +  + L+
Sbjct: 108 KERGQMPESLLNECDEREVNEIGS-------HVKHCKGQTALHWCVGLGPEYLEMIKILV 160

Query: 127 EATNGVDI-YRGNDG 140
           +   G     +    
Sbjct: 161 Q--LGASPTAKDKAD 173

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 20/126 (15%)

Query: 52  LLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVH 111
           LL   A     + L  Q++ G TA+   A  G    ++ L      +  + +  G+  +H
Sbjct: 28  LLGFSA---GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALH 83

Query: 112 NAAYYGHKDTFQYLLEATNGVDI--------------YRGNDGAMVLLFLIAANLYDVAL 157
            A           LL+                        +            N  +   
Sbjct: 84  LACRVRAHTCACVLLQ--PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 158 DLLKLH 163
              +  
Sbjct: 142 PRDEDW 147

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKY--NPDLTNIRDSDGYLPVHNAAYYGHKDTF 122
                  G TA+       +   L  LL +    +  ++++  G   +H AA  G   T 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 123 QYLLEATNGVDI 134
           + L     G  +
Sbjct: 62  EKLYA--AGAGV 71

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.2 bits (134), Expect = 9e-09
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
             +   G T +           L++LLK   D    R   G  P+ +A    +    + L
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLL 244

Query: 126 LEATNGVDIY-RGNDG 140
               +G      G D 
Sbjct: 245 RA--HGAPEPEDGGDK 258

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 9/117 (7%)

Query: 19  DALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIF 78
           D    +  +    T     A     +  +E     +    +++      ++  GHT +  
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-----AENYDGHTPLHV 164

Query: 79  CAAKGNLKALKVLLKYNPDLTNIRDSD-GYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
                + + +++L     DL N  +   G  P+H A         + LL+   G D 
Sbjct: 165 AVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLK--AGADP 218

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 1/60 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +   G T +     + N    ++L  +          D   P  ++      D      E
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 49  ATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRD-SDGY 107
              L     T      L   + +GHT +   +  G L  +++L+    D+ N ++  +G 
Sbjct: 94  VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGR 152

Query: 108 LPVHNAAYYGHKDTFQYLLEATNGVDI 134
             +H A    + D    LL+   G D+
Sbjct: 153 TALHLAVDLQNPDLVSLLLK--CGADV 177

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLT-----NIRDSDGYLPVHNAAYYGHKDTF 122
           +D  G+T +     +G L ++ VL +              + +G+  +H A+ +G+    
Sbjct: 74  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133

Query: 123 QYLLEATNGVDI 134
           + L+    G D+
Sbjct: 134 ELLVS--LGADV 143

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           Q+N   T +         +  + LL    D   +RD  G  P+H A   G   +   L +
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQ 99

Query: 128 ATNGVDIYRGND 139
             +    +  + 
Sbjct: 100 --SCTTPHLHSI 109

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           A++  +G TA+       N   + +LLK   D+ N     GY P             Q L
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQL 203

Query: 126 LEATNGVDIYRGN 138
            +    ++  +  
Sbjct: 204 GQ--LTLENLQML 214

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 5/70 (7%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKY---NPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
               G + +              +++    +    N +++    P+H A      +  + 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 125 LLEATNGVDI 134
           LL    G D 
Sbjct: 64  LLG--AGCDP 71

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS-DGYLPVHNAAYYGHKDTFQYLL 126
            D +G TA++F A  G+ K +++L +   DL + RD   G   +H AA Y   +  + L+
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALV 130

Query: 127 EATNGVDI 134
           E   G DI
Sbjct: 131 E--LGADI 136

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.0 bits (131), Expect = 9e-09
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
            +   T     A K + +AL  LL+ + D+ +  D +G   +   A  G     + L E 
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAE- 97

Query: 129 TNGVDI 134
             G D+
Sbjct: 98  -AGADL 102

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
            R    G TA+   A     + ++ L++   D+  + D  G   +  A            
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNP 162

Query: 126 LEATNGVDI 134
           ++   G  I
Sbjct: 163 MQ--FGRRI 169

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           QD  G T ++  A +G ++ +  L++    +    D+  +     A    H +       
Sbjct: 309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDR 367

Query: 128 ATNGVDI 134
                + 
Sbjct: 368 --CRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D   +T ++        + +  L+K   D   I +      +H AA         Y+L 
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLN 220

Query: 128 -ATNGVDI-YRGNDG 140
                 DI     +G
Sbjct: 221 STKLKGDIEELDRNG 235

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 31  KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLAR---QDNHGHTAVIFCAAKGNLKA 87
            T    +A     D    A  L++K A KVD    AR   +   G TA+ + A   N+  
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGA-KVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294

Query: 88  LKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
           +K L+       + +D DG  P+  AA  G  +   YL++   G  +
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ--QGASV 339

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNI--RDSDGYLPVHNAAYYGHKD---TF 122
            +    +A+   AA  +   +  +L       +I   D +G   +   A+   +D   + 
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA 254

Query: 123 QYLLEATNGVDI 134
           + L+E   G  +
Sbjct: 255 KLLVE--KGAKV 264

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            +       +   A G+    + + + + ++  I        +H  A     +  + L+ 
Sbjct: 90  PEPESPIK-LHTEAAGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIV 146

Query: 128 ATNGVDIYRGND 139
                 I  G D
Sbjct: 147 HEAKECIAAGAD 158

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 11/93 (11%), Positives = 23/93 (24%), Gaps = 12/93 (12%)

Query: 64  TLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQ 123
              +       +++  +  G +K  +          N        P       G+     
Sbjct: 29  KNHQSITSSQHSLLEASYDGYIKRQR----------NELQHYSLYPNPQGYGNGNDFLGD 78

Query: 124 YLLEATNGVDIYRGNDGAMVLLFLIAANLYDVA 156
           +    TN          + + L   AA  Y + 
Sbjct: 79  FNH--TNLQIPTEPEPESPIKLHTEAAGSYAIT 109

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           D  G + +   A  G+    +VLL+      + R      P+H AA  GH +  + LL+ 
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLK- 88

Query: 129 TNGVDI 134
            +G D+
Sbjct: 89  -HGADV 93

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.5 bits (130), Expect = 6e-09
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +     T +   A++G+   ++VLLK+  D+ N +D      +H A  + H++  + L++
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 128 ATNGVDI 134
              G D+
Sbjct: 122 --YGADV 126

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           +D    TA+ +     + + +++L+KY  D+ + +          +   G++D  + L
Sbjct: 96  KDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 56.6 bits (138), Expect = 2e-09
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           Q+N   T +   A +G+ +  KVLL +  +  +I D    LP   A    H D  + L E
Sbjct: 154 QNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDE 212

Query: 128 ATNGVDI 134
               +  
Sbjct: 213 --YNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D+ G +A+ + AA  N+ A  VLLK   +  +++++    P+  AA  G  +T + LL+
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD 179

Query: 128 ATNGVDI 134
             +  + 
Sbjct: 180 --HFANR 184

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.1 bits (134), Expect = 5e-09
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           + + G T +I  A       L+ L+  + D+ N  D  G   +H AA   + D    LL+
Sbjct: 88  RMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK 146

Query: 128 ATNGVDI 134
             NG + 
Sbjct: 147 --NGANK 151

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 54.7 bits (133), Expect = 8e-09
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           QDN G T +    +       ++L++      + R  DG  P+  AA    +   + L+ 
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113

Query: 128 ATNGVDI 134
             +  D+
Sbjct: 114 --SHADV 118

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
            + D  G TA+   A      A K LL+ + D  NI+D+ G  P+H A     +  FQ L
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQIL 77

Query: 126 LE--ATN 130
           +   AT+
Sbjct: 78  IRNRATD 84

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 83  GNLKAL-KVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI-YRGNDG 140
           G+  A+    +     L N  D  G   +H AA Y   D  + LLE     D   + N G
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMG 58

Query: 141 AMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSR 174
              L   ++A+   V   +L  +      ++D+R
Sbjct: 59  RTPLHAAVSADAQGVF-QILIRN---RATDLDAR 88

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYL-PVHNAAYYGHKDTFQYLL 126
            D+ G+TA+ +    GN++ +K+ +K N  L       G+    ++A          Y L
Sbjct: 91  FDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFL 149

Query: 127 EATNGVDIYRGNDG 140
                   +     
Sbjct: 150 S--EIPSTFDLAIL 161

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 71  HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN 130
                +   A   + K +K+LL    D  +  D  G   ++ A   G+  T +  ++   
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVK--K 117

Query: 131 GVDI-YRGNDG 140
              + + G  G
Sbjct: 118 NWRLMFYGKTG 128

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D HGH+A  +  A  N++ +  LL            +   P+H AA        + LL 
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLNAGAL---KNLLENEFPLHQAATLEDTKIVKILLF 83

Query: 128 ATNGVDIY-RGNDGAMVL 144
             +G+D     + G   L
Sbjct: 84  --SGLDDSQFDDKGNTAL 99

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 6/86 (6%)

Query: 68  QDNHG-HTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
               G  T+        ++  +   L   P       +     +H     GH D    LL
Sbjct: 124 YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHITIKNGHVDMMILLL 181

Query: 127 EATNGVDI-YRGNDGAMVLLFLIAAN 151
           +           +   +  + L   N
Sbjct: 182 D--YMTSTNTNNSLLFIPDIKLAIDN 205

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 11/68 (16%)

Query: 68  QDNHGHTAVIFCAAK-GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
            ++      I  A    +++ L+ L KY        D + Y            +  + ++
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKY--------DINIYSANLENVLLDDAEIAKMII 241

Query: 127 EATNGVDI 134
           E    V+ 
Sbjct: 242 E--KHVEY 247

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 4/55 (7%)

Query: 80  AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
                 K LK  L  + D     D  G+   + A    +      LL    G   
Sbjct: 7   INTWKSKQLKSFLS-SKDT-FKADVHGHSASYYAIADNNVRLVCTLLN--AGALK 57

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLT---NIRDSDGYLPVHNAAYYGHKDTFQY 124
            D HG TA        +   L+ LL      T     R+ DG   +H A     ++T Q 
Sbjct: 75  LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL 134

Query: 125 LLEATNGVDI 134
           LLE   G DI
Sbjct: 135 LLE--RGADI 142

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           A     G + +I      +L  +++LL++  ++ N +   G   +H+A+  G     + L
Sbjct: 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTL 202

Query: 126 LEATNGVDI 134
           +   +G D 
Sbjct: 203 VR--SGADS 209

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDL---TNIRDSDGYLPVHNAAYYGHKDTFQ 123
           R D  G T +     +GNL A+  L+          +I ++    P+H A         +
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 124 YLLEATNGVDI-YRGNDGAMVL 144
            L+    G         G    
Sbjct: 64  LLVT--AGASPMALDRHGQTAA 83

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.8 bits (128), Expect = 4e-08
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           Q   G +A+   + +G L  ++ L++   D  ++++     P+  A      D  +    
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS-DGYLPVHNAAYYGHKDTFQYLL 126
           ++  G TA+         + +++LL+   D+ +  D   G  P+ +A         Q LL
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLL 170

Query: 127 EATNGVDI 134
           +  +G ++
Sbjct: 171 Q--HGANV 176

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 98  LTNIRDSDGYLPVHNAAYYGHKDTFQYLLE--ATNGVDI-YRGNDG 140
           +    D DG  P+H A   G+      L+      G ++    N  
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR 46

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS-DGYLPVHNAAYYGHKDTFQYLL 126
            D +G TA++F A  G+ K +++L +   DL + RD   G   +H AA Y   +  + L+
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALV 131

Query: 127 EATNGVDI 134
           E   G DI
Sbjct: 132 E--LGADI 137

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
            +   T     A K + +AL  LL+ + D+ +  D +G   +   A  G     + L E 
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAE- 98

Query: 129 TNGVDI 134
             G D+
Sbjct: 99  -AGADL 103

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
            R    G TA+   A     + ++ L++   D+  + D  G   +  A            
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNP 163

Query: 126 LEATNGVDI 134
           ++   G  I
Sbjct: 164 MQ--FGRRI 170

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 54.3 bits (132), Expect = 2e-09
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D +G T +    A G+L+ ++VLLK   D+ N  D+ G+ P+H AA+ GH +  + LL+
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101

Query: 128 ATNGVDI 134
             +G D+
Sbjct: 102 --HGADV 106

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.8 bits (128), Expect = 9e-09
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D  G T +   A  G+L+  +VLLK+  D+ N +D  G      +   G++D  + L +
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.9 bits (118), Expect = 2e-07
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
                +     ++  A  G    +++L+    D+ N +D  G  P++ A  +GH +  + 
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEV 65

Query: 125 LLEATNGVDI 134
           LL+  NG D+
Sbjct: 66  LLK--NGADV 73

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.7 bits (133), Expect = 4e-09
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           +    T + F A    +  ++ LL++  D+ + +D  G +P+HNA  YGH +  + L++ 
Sbjct: 39  EGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVK- 96

Query: 129 TNGVDI 134
            +G  +
Sbjct: 97  -HGAVV 101

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.3 bits (132), Expect = 4e-09
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D  G   +    + G+ +  ++L+K+   + N+ D   + P+H AA  G  +  + LL+
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQ 129

Query: 128 ATNGVDI-YRGNDGAMVLLFLIAANLY-DVALDLLKLH 163
             +G D   +  DG   L   +  +   D+  DLL+  
Sbjct: 130 --HGADPTKKNRDGNTPL--DLVKDGDTDIQ-DLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 51.2 bits (124), Expect = 5e-08
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
           ++     ++  A  G+++ +K L           +     P+H AA Y      +YLL+ 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ- 63

Query: 129 TNGVDI 134
            +G D+
Sbjct: 64  -HGADV 68

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 13/119 (10%)

Query: 45  DSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS 104
             ++   L +K     + +    + N  +  +     +   K    L+    D+   R  
Sbjct: 18  TYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTK 73

Query: 105 DGYLPVHNAAYYGHKD------TFQYLLEATNGVDI-YRGNDGAMVLLFLIAANLYDVA 156
           +G          G  D        +  LE   G DI        +V+   I     D  
Sbjct: 74  EGTTLFFPLFQGGGNDITGTTELCKIFLE--KGADITALYKPYKIVVFKNIFNYFVDEN 130

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 72  GHTAVIFCAAKGNLKALKVLLKYNPDLT--NIRDSDGYLPVHNAAYYGHKDTFQYLLEAT 129
            +  V   A  G  +    L +   +     ++ +  Y  + N           +L+   
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-- 63

Query: 130 NGVDI-YRGNDGAMVLLFLIAANLYDVALDL 159
            G DI  R  +G  +   L      D+    
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 5/74 (6%), Positives = 14/74 (18%), Gaps = 10/74 (13%)

Query: 68  QDNHGHTAVIFCAAKGNLKALK-------VLLKYNPDLTNIRDSDGYLPVHNAAYYGHKD 120
                   V        +   +       +  +    L  I+D  G   +          
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPI 168

Query: 121 TFQYLLEATNGVDI 134
             + + +       
Sbjct: 169 ALKMMED--YIKKY 180

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 56.3 bits (137), Expect = 5e-09
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLL-KYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
           +   G T +I    K +L  ++ LL + + ++ N  DSDG   +  A     K   + L 
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 127 EATNGVDI 134
           +   G   
Sbjct: 274 K--RGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.9 bits (136), Expect = 5e-09
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
            +++  G T +           +++LL++  D   +R  +G  P   AA  G     +  
Sbjct: 33  FQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLF 91

Query: 126 LEATNGVDI 134
           L    G D+
Sbjct: 92  LS--KGADV 98

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +  +G T  +  A  G++K LK+ L    D+ N  D  G+     AA YG     ++L +
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 128 ATNGVDI 134
              G ++
Sbjct: 127 --RGANV 131

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 68  QDNHGHTAVIFCAAKGNLKAL----KVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQ 123
            DN G  A+I      +   +     +LL +  D+ N+R   G  P+  A    H    Q
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQ 236

Query: 124 YLLEATNGVDI-YRGNDG 140
            LLE    ++I    +DG
Sbjct: 237 RLLE-QEHIEINDTDSDG 253

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKY---------NPDLTNIRDSDGYLPVHNAAYYGH 118
            D +G TA +  A  G +KALK L K            +        G   + +AA  GH
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 119 KDTFQYLLEATNGVDIY-RGNDG 140
            +  + LL    G D+    N G
Sbjct: 161 VEVLKILL-DEMGADVNACDNMG 182

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 69  DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD-GYLPVHNAAYYGHKDTFQYLLE 127
               +  +I      ++  ++ LL+   ++ N ++ + G+ P+HNA     +D  + LL 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 128 ATNGVDIY-RGNDG 140
             +G D   R  +G
Sbjct: 61  --HGADPVLRKKNG 72

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 61  DPQTLARQDNHGHTAVIFCAAKGNLKALKVLL-KYNPDLTNIRDSDGYLPVHNAAYYGHK 119
             +   R    G TA++  A KG+++ LK+LL +   D+ N  D+ G   + +A      
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDD 195

Query: 120 DTF----QYLLEATNGVDIY-RGNDG 140
                    LL+  +G D+  RG  G
Sbjct: 196 SDVEAITHLLLD--HGADVNVRGERG 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDL----TNIRDSDGYLPVHNAAYYGHKDTFQ 123
           +   G TA+   A   NL+A  VL++  P+L          +G   +H A    + +  +
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92

Query: 124 YLLEATNGVDI 134
            LL    G  +
Sbjct: 93  ALLA--RGASV 101

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 68  QDNHGHTAVIFCAAKGN----LKALKVLLKYNPD-----LTNIRDSDGYLPVHNAAYYGH 118
           QD+ G+T +     + N     +   +LL Y+       L  + ++ G  P   A   G+
Sbjct: 150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209

Query: 119 KDTFQYLLEATNGVDI 134
              FQ+L++      I
Sbjct: 210 IVMFQHLMQ--KRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 72  GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
             + ++  A + +++AL  LLK+     + R + G   +H AA Y + +    L+E    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME--AA 60

Query: 132 VDIYRGN 138
            ++    
Sbjct: 61  PELVFEP 67

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD-------------GYLPVHNAA 114
           +   G TA+       N+  ++ LL     + + R +              G  P+  AA
Sbjct: 71  ELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAA 129

Query: 115 YYGHKDTFQYLLEATNGVDIY-RGNDGAMVLLFLIAANLYDVALDLLKL 162
             G ++  + L+E  +G DI  + + G  VL  LI       A  +  L
Sbjct: 130 CVGSEEIVRLLIE--HGADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 62  PQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDT 121
                    +G   + F A  G+ + +++L+++  D+   +DS G   +H      +K  
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTF 169

Query: 122 FQYLLE--ATNGVDI 134
              +     +     
Sbjct: 170 ACQMYNLLLSYDGGD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            ++  ++A++     G L+    L         I +  G  P+  AA  G  + F+++L+
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCPTVQLE-EISNHQGLTPLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 23/159 (14%)

Query: 8   PGVEDFVTNHPDALTAKIVEPGS--KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTL 65
            G+ +++  +   LT      GS  KT        L D  +     LL       +P+ L
Sbjct: 19  TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78

Query: 66  A-----RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS-------------DGY 107
                  +   GH+A+     K +L+ +K+L++   D+ ++R                G 
Sbjct: 79  VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGE 137

Query: 108 LPVHNAAYYGHKDTFQYLLEA-TNGVDIY-RGNDGAMVL 144
           LP+  AA     D   YLLE       +    + G  VL
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 17/105 (16%)

Query: 45  DSDEATCLLDKLATKVDPQT--LARQDNHGHTAVIFCAA---KGNLKALKVLLKYNPDL- 98
             +E T LL+ L       T     + + G T ++        G    +  LL+ + D  
Sbjct: 14  VPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSG 73

Query: 99  ---------TNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
                           G+  +H A         + L+E  NG D+
Sbjct: 74  NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE--NGADV 116

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 10/97 (10%), Positives = 20/97 (20%), Gaps = 19/97 (19%)

Query: 62  PQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNI------------------RD 103
            +        G   +   A       +  LL+      ++                   +
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185

Query: 104 SDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDG 140
           S     +    Y G       L       +I   + G
Sbjct: 186 SPENSALVIHMYDGLLQMGARLCPTVQLEEI-SNHQG 221

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 10/80 (12%)

Query: 72  GHTAVIFCAAKGNLKALKVLL-------KYNPDLTNIRDSDGYLPVHNAA---YYGHKDT 121
               +    ++G  + L  LL       KY  D      S G   +  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 122 FQYLLEATNGVDIYRGNDGA 141
              LL+        +    A
Sbjct: 62  IMPLLQIDKDSGNPKPLVNA 81

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            D    TA+ +  + G+ + ++ LL+    + N +D  G+ P+H AA  G  +  + LL 
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLV 94

Query: 128 ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSR 174
               V+     +G   L +  + N +++A+ LL+        +    
Sbjct: 95  KGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +D+ G + +   A+ G  + +K LL     + N  + +G  P+H AA     +    LLE
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query: 128 ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH 163
              G +    +      +   AA      + +L  +
Sbjct: 128 --GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 74  TAVIFCAAKGNLKAL-KVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGV 132
             +   A  G L  L + +L          D D    +H A   GH +  ++LL+   GV
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQ--LGV 64

Query: 133 DI-YRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSR 174
            +  + + G   L    +A   ++   LL     +   N +  
Sbjct: 65  PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC 107

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
            +D++  TA+   AAKGNLK + +LL Y     NI+D++G  P+H A      +  ++L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 127 EATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL 160
               G  IY  N      L +    L  + L  L
Sbjct: 193 T--QGASIYIENKEEKTPLQVAKGGL-GLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
           +   + +G T + + A+K   +   +LL+   +  + +D      +H AA  G+      
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 125 LLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH 163
           LL           +      L L            L   
Sbjct: 158 LLF--YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 22/135 (16%)

Query: 31  KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLA-----RQDNHGHTAVIFCAAKGNL 85
           KT        L +  +D    LLD        +             G TA+     + N+
Sbjct: 55  KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114

Query: 86  KALKVLLKYNPDLTNIRDSD--------------GYLPVHNAAYYGHKDTFQYLLEA-TN 130
             + +L++   D+     +               G LP+  AA        ++LL+    
Sbjct: 115 TLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173

Query: 131 GVDI-YRGNDGAMVL 144
             DI  R + G  VL
Sbjct: 174 PADISARDSVGNTVL 188

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 18/91 (19%)

Query: 52  LLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKY---------------NP 96
           LL       D      +D+ G+T +       +                           
Sbjct: 167 LLQNSWQPADIS---ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 97  DLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            L  I +  G  P+  AA  G      Y+L+
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQ 254

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKD 120
            +  G T +   A+ G +  L  +L+        R+       H AA++ H  
Sbjct: 229 TNRKGLTPLALAASSGKIGVLAYILQ--------REIHEPECRHAAAHHHHHH 273

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 20/141 (14%)

Query: 31  KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLAR-----QDNHGHTAVIFCAAKGNL 85
           KT        L    +D    LLD      + +             G TA+     +   
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 86  KALKVLLK-------------YNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA-TNG 131
             +++L++             + P         G LP+  AA         YL E     
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 132 VDI-YRGNDGAMVLLFLIAAN 151
            D+  + + G  VL  L+A  
Sbjct: 167 ADLRRQDSRGNTVLHALVAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 49  ATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGN---------LKALKVLLKY----- 94
              L +    + D +   RQD+ G+T +    A  +          K   +LL       
Sbjct: 156 VHYLTENGHKQADLR---RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212

Query: 95  -NPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            + +L  + ++DG  P+  AA  G    FQ+++ 
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 31  KTIFHTIAEL-LVDDDSDEATCLLDKLATKVDPQ--TLARQDNHGHTAVIFCAAKGNLKA 87
           +TI H I     +   S  A   LD L   +  +     +   +   +           +
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261

Query: 88  LKVLLKYNPDLT---NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGN 138
           +   L     +    N +DS+G   ++ AA  G+      LL+   G D +  N
Sbjct: 262 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD--YGADPFIAN 313

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 15/122 (12%)

Query: 2   IEKNDWPGVEDFVTNHPDALTAKIVEPGS---------KTIFHTIAELLVDDDSDEATCL 52
           I  +   G       + D L   IV+  +         K            D   E   L
Sbjct: 209 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 268

Query: 53  LDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHN 112
              +A  ++      QD++G T +   A  GN+  +  LL Y  D   I +  G  PV  
Sbjct: 269 KWIIANMLN-----AQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDF 322

Query: 113 AA 114
            A
Sbjct: 323 GA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 15/122 (12%)

Query: 67  RQDNHGHTAVIFCAAKGN---LKALKVLLKYNPDLTNIRDSDGYLPVHNAAYY----GHK 119
             DN G + ++      N       + LL Y      + DS     +H+        G  
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 120 DTFQYLLEA-------TNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNID 172
              +Y L+             I  G +              D  L+ L L   I  + ++
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA-NMLN 277

Query: 173 SR 174
           ++
Sbjct: 278 AQ 279

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 9/73 (12%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 68  QDNHGHTAVIFCAAKGNLKAL-KVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
           +    +      +    L+ +         +L    D  G  P+H      + +  ++L+
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 127 EATNGVDIYRGND 139
           +  +G +   G++
Sbjct: 152 K--HGSNRLYGDN 162

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 4/78 (5%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDL--TNIRDSDGYLPVHNAAYYGHKDTFQ 123
           A      + A    A  G+L  L  L +  P      I+  + Y     A   GH +   
Sbjct: 157 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 216

Query: 124 YLLEATNGVDIYRGNDGA 141
           +LL+    V +       
Sbjct: 217 FLLD--CPVMLAYAEIHE 232

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 11/114 (9%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
            + +     A I       L  L +LL  +  +  +  ++ Y     AA  GH      L
Sbjct: 90  IKSEVICFVAAI-TGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRL 147

Query: 126 LEA---TNGVDIYRGNDGAMVLLFLIAANL--YDVALDLLKLHPTIGRDNIDSR 174
            E         I   N  A    F +AA      V   L +L PT     I + 
Sbjct: 148 CELAPTEIMAMIQAENYHA----FRLAAENGHLHVLNRLCELAPTEATAMIQAE 197

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
           L +Q   G TA+ +C    N + LK+LL+       I +  G  P+  A    H+   + 
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEEL 256

Query: 125 LLEATNG 131
           L +A +G
Sbjct: 257 LTQALSG 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +   G+TA+ + A       LK+LLK    +    +  G   +  A    HK+  + L +
Sbjct: 222 KAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQ 280

Query: 128 ATNG 131
           A  G
Sbjct: 281 AQAG 284

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	419
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-45  Score=359.52  Aligned_cols=347  Identities=16%  Similarity=0.071  Sum_probs=277.1

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.++|++|+++ +.+++.+ +..| .||||+|+ .      .|+.+++++|++.|  ++++.++..|.||||+|+
T Consensus        21 Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~~-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~   88 (437)
T 1n11_A           21 ASFMGHLPIVKNLLQR-GASPNVS-NVKV-ETPLHMAA-R------AGHTEVAKYLLQNK--AKVNAKAKDDQTPLHCAA   88 (437)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCSCCS-SSCC-CCHHHHHH-H------HTCHHHHHHHHHHT--CCSSCCCTTSCCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHc-CCCCCCC-CCCC-CCHHHHHH-H------cCCHHHHHHHHhCC--CCCCCCCCCCCCHHHHHH
Confidence            6788999999999988 8888888 9999 99999999 9      99999999999999  899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++.|++.+. .+..|.||||.|+..|+.+++++|+
T Consensus        89 ~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll  166 (437)
T 1n11_A           89 RIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLL  166 (437)
T ss_dssp             HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999 799999999999999999999999999999999888 8899999999999999999999999


Q ss_pred             hhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhh------------------hc-ccCCCCccccccccc
Q 014730          161 KLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNC------------------WC-QQSCIPLEKERVPSI  221 (419)
Q Consensus       161 ~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~~~  221 (419)
                      ++|+++. ..+..|.||||+|+..+..       ...+.++...                  .. +..+...+.+...+ 
T Consensus       167 ~~g~~~~-~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-  237 (437)
T 1n11_A          167 ERDAHPN-AAGKNGLTPLHVAVHHNNL-------DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-  237 (437)
T ss_dssp             HTTCCTT-CCCSSCCCHHHHHHHTTCH-------HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             hCCCCCC-CCCCCCCCHHHHHHHcCCH-------HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            9999887 7889999999999987532       2222222211                  00 00011111111000 


Q ss_pred             ccCCCCCCCCCCCccccccccCCCCC-CCCCChhhHHHHHhhHHHHHHHHHHHHhhh--cCchhHHH-HHHhhhhHhHHH
Q 014730          222 QSNDDQNVDGDTENFTVTSKMHPKES-TPFGSTQQITAIFGLMFHKLNRMLWNALMR--LAPSIKVI-HDQKLTHMRTVE  297 (419)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~  297 (419)
                                            .... .....+.+.++..++...+..++.......  ...+.+++ +++..++..+++
T Consensus       238 ----------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  295 (437)
T 1n11_A          238 ----------------------ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD  295 (437)
T ss_dssp             ----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ----------------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence                                  0001 122236777777777777766665544432  33455666 777777765544


Q ss_pred             HHHHHHhhhhhccccchhhh-hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccc
Q 014730          298 IVRIICEGVVWTNFQKSAQL-SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFT  376 (419)
Q Consensus       298 ~l~~l~~~~~~~~~~~~~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~  376 (419)
                         .+.+.+.  +++..+.. .||||+|+..|+.++|++|++. |++++.++..|+||||+|+.+++.+++++|+++   
T Consensus       296 ---~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~---  366 (437)
T 1n11_A          296 ---VLIKHGV--MVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN---  366 (437)
T ss_dssp             ---HHHHHTC--CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---
T ss_pred             ---HHHhCCc--cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC---
Confidence               4456554  44433222 8999999999999999999999 999999999999999999999999999999999   


Q ss_pred             cceeeeccCCCCccchhcccccCCC
Q 014730          377 TFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       377 ~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +.+++.+|.+|+||||+|++.|..+
T Consensus       367 ga~~~~~~~~g~t~l~~A~~~g~~~  391 (437)
T 1n11_A          367 GASPNEVSSDGTTPLAIAKRLGYIS  391 (437)
T ss_dssp             TCCSCCCCSSSCCHHHHHHHTTCHH
T ss_pred             cCCCCCCCCCCCCHHHHHHHcCcHH
Confidence            6778899999999999999998754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.3e-43  Score=341.27  Aligned_cols=331  Identities=15%  Similarity=0.094  Sum_probs=257.0

Q ss_pred             CCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 014730           17 HPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNP   96 (419)
Q Consensus        17 ~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~   96 (419)
                      .|.+++.. +..| .||||+|| .      .|+.++|++|++.|  .+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus         3 ~g~~~~~~-~~~g-~t~L~~Aa-~------~g~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~   71 (437)
T 1n11_A            3 PGISGGGG-GESG-LTPLHVAS-F------MGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA   71 (437)
T ss_dssp             --------------CCHHHHHH-H------HTCHHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             CCCCcccc-CCCC-CCHHHHHH-H------CCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            36677888 9999 99999999 9      99999999999999  8999999999999999999999999999999999


Q ss_pred             CCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCc
Q 014730           97 DLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRI  176 (419)
Q Consensus        97 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~  176 (419)
                      + ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+++.. ..+..|.|
T Consensus        72 ~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t  148 (437)
T 1n11_A           72 K-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL-ATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFT  148 (437)
T ss_dssp             C-SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCC
T ss_pred             C-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCC
Confidence            9 799999999999999999999999999999999999 99999999999999999999999999998876 78899999


Q ss_pred             HHHHHHhCCCCCCCCCchhHHHHHHHh------------------hhc-ccCCCCcccccccccccCCCCCCCCCCCccc
Q 014730          177 VLNTLSQKPYAFASGSRLGRLRRLIYN------------------CWC-QQSCIPLEKERVPSIQSNDDQNVDGDTENFT  237 (419)
Q Consensus       177 ~l~~a~~~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (419)
                      |||+|+..+..       ...+.++..                  +.. +..+...+.+...+                 
T Consensus       149 ~L~~A~~~g~~-------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------  204 (437)
T 1n11_A          149 PLHVAAKYGKV-------RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-----------------  204 (437)
T ss_dssp             HHHHHHHTTCH-------HHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-----------------
T ss_pred             HHHHHHHcCCH-------HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----------------
Confidence            99999987642       222333222                  111 11111111111110                 


Q ss_pred             cccccCCCCC-CCCCChhhHHHHHhhHHHHHHHHHHHHhhh--cCchhHHH-HHHhhhhHhHHHHHHHHHhhhhhccccc
Q 014730          238 VTSKMHPKES-TPFGSTQQITAIFGLMFHKLNRMLWNALMR--LAPSIKVI-HDQKLTHMRTVEIVRIICEGVVWTNFQK  313 (419)
Q Consensus       238 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~  313 (419)
                            +... .....+.+.++..+....+..++.......  ...+.+++ +++..++..++   +.+++...  +.+.
T Consensus       205 ------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v---~~Ll~~~~--~~~~  273 (437)
T 1n11_A          205 ------PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV---ALLLSKQA--NGNL  273 (437)
T ss_dssp             ------SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH---HHHHTTTC--CTTC
T ss_pred             ------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHH---HHHHhcCC--CCCC
Confidence                  0001 112236777777777777666666554442  33456666 77777776444   44566654  3332


Q ss_pred             --hhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccc
Q 014730          314 --SAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNIL  391 (419)
Q Consensus       314 --~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~L  391 (419)
                        ..+ .||||.|+..|+.+++++|++. |++++.++..|+||||+|+.+++.+++++|+++   +.+++.+|..|+|||
T Consensus       274 ~~~~g-~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~L  348 (437)
T 1n11_A          274 GNKSG-LTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYSPL  348 (437)
T ss_dssp             CCTTC-CCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCTTCCCTTSCCHH
T ss_pred             CCCCC-CCHHHHHHHcCCHHHHHHHHhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc---CCCCCCCCCCCCCHH
Confidence              233 8999999999999999999999 999999999999999999999999999999999   677899999999999


Q ss_pred             hhcccccCCC
Q 014730          392 HLAGRLVPSS  401 (419)
Q Consensus       392 h~A~~~~~~~  401 (419)
                      |+|++.|+.+
T Consensus       349 ~~A~~~g~~~  358 (437)
T 1n11_A          349 HQAAQQGHTD  358 (437)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHCChHH
Confidence            9999998765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.5e-40  Score=312.14  Aligned_cols=270  Identities=14%  Similarity=0.066  Sum_probs=175.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |++.|+.+.|+.++...+.+++.+ |..| .||||+|+ .      .|+.+++++|++.|  .+++..|..|.||||+|+
T Consensus        31 A~~~g~~~~v~~ll~~~~~~~~~~-d~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           31 AARSGNEEKLMALLTPLNVNCHAS-DGRK-STPLHLAA-G------YNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHTCHHHHHHHCCTTTTTCCCS-STTC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhcCCCcccC-CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCCCccCCCCCcHHHHHH
Confidence            345556666666665555555555 5555 66666666 5      56666666666665  555555556666666666


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHH-------------
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFL-------------  147 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a-------------  147 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.+|++.|             
T Consensus       100 ~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A          100 SYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL-VNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-ccCCCCcchHHHhhhhhHHHHHhhh
Confidence            66666666666666555 455555566666666666666666666666665555 555555554443             


Q ss_pred             --------HHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCccccccc
Q 014730          148 --------IAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVP  219 (419)
Q Consensus       148 --------~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (419)
                              +..++.+.++.++..+.... ..+..|.||||+|+...                                  
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~t~L~~A~~~~----------------------------------  222 (351)
T 3utm_A          178 KGHSLLQAAREADLAKVKKTLALEIINF-KQPQSHETALHCAVASL----------------------------------  222 (351)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTTCCTTC-CCTTTCCCHHHHHHHCC----------------------------------
T ss_pred             cccHHHHHHHhccHHHHHHHHHhhcccc-cCCCCCCCHHHHHHHHh----------------------------------
Confidence                    22333344444443332222 34444555555555432                                  


Q ss_pred             ccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHH
Q 014730          220 SIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIV  299 (419)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  299 (419)
                                                                                              +....+++
T Consensus       223 ------------------------------------------------------------------------~~~~~~~~  230 (351)
T 3utm_A          223 ------------------------------------------------------------------------HPKRKQVA  230 (351)
T ss_dssp             ------------------------------------------------------------------------STTHHHHH
T ss_pred             ------------------------------------------------------------------------CccHHHHH
Confidence                                                                                    11123455


Q ss_pred             HHHHhhhhhccccchhhh-hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccc
Q 014730          300 RIICEGVVWTNFQKSAQL-SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTF  378 (419)
Q Consensus       300 ~~l~~~~~~~~~~~~~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~  378 (419)
                      +.+.+.+.  +++..+.. .||||+|+..|+.++|++|++. |++++.++..|+||||+|+.+++.+++++|+++   +.
T Consensus       231 ~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga  304 (351)
T 3utm_A          231 ELLLRKGA--NVNEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSY---GS  304 (351)
T ss_dssp             HHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TC
T ss_pred             HHHHHcCC--CcCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CC
Confidence            55566654  44333222 8999999999999999999999 999999999999999999999999999999999   66


Q ss_pred             eeeeccCCCCccchhccc
Q 014730          379 LFSSRDKSGNNILHLAGR  396 (419)
Q Consensus       379 ~~~~~D~~G~t~Lh~A~~  396 (419)
                      +++..|..|.||||+|..
T Consensus       305 d~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          305 DPSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             CTTCCCTTSCCHHHHSCH
T ss_pred             CCCCcCCCCCChhhhhhH
Confidence            789999999999999954

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-39  Score=298.23  Aligned_cols=260  Identities=18%  Similarity=0.169  Sum_probs=223.0

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |++.|+.++|+.|+++ +.+++.+.+..| .||||+|+ .      .|+.+++++|++.|  .+++..|..|.||||+|+
T Consensus        12 A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A           12 AVQNEDVDLVQQLLEG-GANVNFQEEEGG-WTPLHNAV-Q------MSREDIVELLLRHG--ADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCTTTC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHc-CCCcccccCCCC-CcHHHHHH-H------cCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHH
Confidence            6789999999999988 677777646677 99999999 9      99999999999999  889999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcccc----------CCCCCcHHHHHHHc
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYR----------GNDGAMVLLFLIAA  150 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~----------~~~g~t~l~~a~~~  150 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .          +..|.||||.|+..
T Consensus        81 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL-RRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccc-ccccHHHHHhhccCCCcHHHHHHHc
Confidence            99999999999999999 788999999999999999999999999999999887 5          77899999999999


Q ss_pred             CcHHHHHHHHhh-CCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCC
Q 014730          151 NLYDVALDLLKL-HPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNV  229 (419)
Q Consensus       151 ~~~~~~~~Ll~~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (419)
                      |+.+++++|++. |.++. ..+..|.||||+|+..+....                                        
T Consensus       159 ~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~----------------------------------------  197 (285)
T 1wdy_A          159 GHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSD----------------------------------------  197 (285)
T ss_dssp             TCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTT----------------------------------------
T ss_pred             CCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccch----------------------------------------
Confidence            999999999998 88876 789999999999988643110                                        


Q ss_pred             CCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhc
Q 014730          230 DGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWT  309 (419)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  309 (419)
                                                                                       ..++++.+.+.+.  
T Consensus       198 -----------------------------------------------------------------~~~i~~~Ll~~g~--  210 (285)
T 1wdy_A          198 -----------------------------------------------------------------VEAITHLLLDHGA--  210 (285)
T ss_dssp             -----------------------------------------------------------------HHHHHHHHHHTTC--
T ss_pred             -----------------------------------------------------------------HHHHHHHHHHcCC--
Confidence                                                                             1234444455544  


Q ss_pred             cccchhhh-hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeecc
Q 014730          310 NFQKSAQL-SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRD  384 (419)
Q Consensus       310 ~~~~~~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D  384 (419)
                      +++..+.. .||||+|+..|+.++|++|++.++++++.++..|+||||+|+++++.+++++|+++   +.+++.+|
T Consensus       211 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~---Ga~~~~~d  283 (285)
T 1wdy_A          211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDCGD  283 (285)
T ss_dssp             CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SSCSCCSS
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc---CCCCCccc
Confidence            43332211 89999999999999999999933999999999999999999999999999999999   45555555

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.3e-39  Score=307.25  Aligned_cols=271  Identities=18%  Similarity=0.159  Sum_probs=230.2

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCC-CCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVE-PGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFC   79 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~-~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A   79 (419)
                      ||++|+.++|+.||++ |.++|.+ +. .| .||||+|| .      .|+.++|++|+++|  ++++.++..+.+|++.+
T Consensus        32 Av~~g~~~~V~~LL~~-Gadvn~~-~~~~g-~TpLh~A~-~------~g~~~iv~~Ll~~g--a~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           32 AVQNEDVDLVQQLLEG-GANVNFQ-EEEGG-WTPLHNAV-Q------MSREDIVELLLRHG--ADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHTTCHHHHHHHHHH-TCCTTCC-CTTTC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCcc-CCCCC-cCHHHHHH-H------cCCHHHHHHHHHcC--CchhhhccCCCchhHHH
Confidence            6889999999999988 8899988 65 47 99999999 9      99999999999999  99999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccc---------cCCCCCcHHHHHHHc
Q 014730           80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY---------RGNDGAMVLLFLIAA  150 (419)
Q Consensus        80 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~---------~~~~g~t~l~~a~~~  150 (419)
                      +..+...++..+++.+++ ++.++..|.||||+|+..|+.+++++|+++|++++..         .+..|.||||+|+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence            999999999999999998 7999999999999999999999999999999988763         244689999999999


Q ss_pred             CcHHHHHHHHhh-CCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCC
Q 014730          151 NLYDVALDLLKL-HPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNV  229 (419)
Q Consensus       151 ~~~~~~~~Ll~~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (419)
                      |+.+++++|+++ |+++. .+|..|.++++.++......                                         
T Consensus       179 g~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~~~~-----------------------------------------  216 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDS-----------------------------------------  216 (337)
T ss_dssp             TCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHSCTT-----------------------------------------
T ss_pred             CCHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHcCcc-----------------------------------------
Confidence            999999999975 78877 88999999998876532110                                         


Q ss_pred             CCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhc
Q 014730          230 DGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWT  309 (419)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  309 (419)
                                                                                      ....+++.|++.+.  
T Consensus       217 ----------------------------------------------------------------~~~~i~~lLl~~ga--  230 (337)
T 4g8k_A          217 ----------------------------------------------------------------DVEAITHLLLDHGA--  230 (337)
T ss_dssp             ----------------------------------------------------------------THHHHHHHHHHTTC--
T ss_pred             ----------------------------------------------------------------cHHHHHHHHHHCCC--
Confidence                                                                            00123344455544  


Q ss_pred             cccch--hhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCC
Q 014730          310 NFQKS--AQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSG  387 (419)
Q Consensus       310 ~~~~~--~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G  387 (419)
                      +++..  .+ .||||+|+..|+.++|+.|+...+++++.+|..|+||||+|+++++.++|++|+++|   .++     ++
T Consensus       231 d~n~~d~~g-~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G---Ad~-----n~  301 (337)
T 4g8k_A          231 DVNVRGERG-KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---AST-----DC  301 (337)
T ss_dssp             CTTCCCGGG-CCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS---CSS-----TT
T ss_pred             CCCCcCCCC-CCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCC-----CC
Confidence            44332  33 899999999999999999998658999999999999999999999999999999994   333     45


Q ss_pred             CccchhcccccCCC
Q 014730          388 NNILHLAGRLVPSS  401 (419)
Q Consensus       388 ~t~Lh~A~~~~~~~  401 (419)
                      .||||+|++.|+.+
T Consensus       302 ~~~L~~A~~~~~~~  315 (337)
T 4g8k_A          302 GDLVMTARRNYDHS  315 (337)
T ss_dssp             CCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHH
Confidence            67999999998866

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.9e-39  Score=295.82  Aligned_cols=246  Identities=15%  Similarity=0.141  Sum_probs=218.1

Q ss_pred             CCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCcccccc-CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC
Q 014730           28 PGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQ-DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDG  106 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g  106 (419)
                      +| .||||.|+ .      .|+.+++++|++.|  .+++.. +..|.||||+|+..|+.+++++|+++|++ ++.++..|
T Consensus         4 ~g-~~~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g   72 (285)
T 1wdy_A            4 ED-NHLLIKAV-Q------NEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNG   72 (285)
T ss_dssp             HH-HHHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred             cc-chHHHHHH-H------cCCHHHHHHHHHcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCC
Confidence            46 89999999 9      99999999999999  888887 78899999999999999999999999999 79999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCC----------CCCCCc
Q 014730          107 YLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDN----------IDSRRI  176 (419)
Q Consensus       107 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~----------~~~g~~  176 (419)
                      .||||+|+..|+.+++++|+++|++++. .+..|.||||.|+..|+.+++++|++.|+++. ..          +..|.|
T Consensus        73 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~~~~~~~~~g~t  150 (285)
T 1wdy_A           73 ATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-LRRKTKEDQERLRKGGAT  150 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCCCHHHHHTTCCCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc-cccccHHHHHhhccCCCc
Confidence            9999999999999999999999999999 99999999999999999999999999998876 44          778999


Q ss_pred             HHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhH
Q 014730          177 VLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQI  256 (419)
Q Consensus       177 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (419)
                      |||+|+..+.                                                                      
T Consensus       151 ~L~~A~~~~~----------------------------------------------------------------------  160 (285)
T 1wdy_A          151 ALMDAAEKGH----------------------------------------------------------------------  160 (285)
T ss_dssp             HHHHHHHHTC----------------------------------------------------------------------
T ss_pred             HHHHHHHcCC----------------------------------------------------------------------
Confidence            9999987532                                                                      


Q ss_pred             HHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhh-hhhccccc--hhhhhHHHHHHHHhCh----
Q 014730          257 TAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEG-VVWTNFQK--SAQLSGAMLSAAILGI----  329 (419)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~--~~~~~t~L~~A~~~g~----  329 (419)
                                                             .++++.+++. +.  +++.  ..+ .||||.|+..|+    
T Consensus       161 ---------------------------------------~~~v~~Ll~~~~~--~~~~~~~~g-~t~l~~a~~~~~~~~~  198 (285)
T 1wdy_A          161 ---------------------------------------VEVLKILLDEMGA--DVNACDNMG-RNALIHALLSSDDSDV  198 (285)
T ss_dssp             ---------------------------------------HHHHHHHHHTSCC--CTTCCCTTS-CCHHHHHHHCSCTTTH
T ss_pred             ---------------------------------------HHHHHHHHHhcCC--CCCccCCCC-CCHHHHHHHccccchH
Confidence                                                   1233333433 22  2222  222 899999999999    


Q ss_pred             HHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          330 PEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       330 ~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      .+++++|++. |++++.++..|+||||+|+.+++.+++++|++.  .+.+++.+|..|+||||+|++.|+.+
T Consensus       199 ~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~g~~~~~~~~~g~t~l~~A~~~~~~~  267 (285)
T 1wdy_A          199 EAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             HHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS--SSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--cCCCccccCCCCCcHHHHHHHcCcHH
Confidence            9999999999 999999999999999999999999999999995  47788999999999999999998755

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.4e-39  Score=288.02  Aligned_cols=231  Identities=20%  Similarity=0.196  Sum_probs=209.1

Q ss_pred             ccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q 014730           20 ALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLT   99 (419)
Q Consensus        20 ~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~   99 (419)
                      +++.+ +..| .||||+|+ .      .|+.+++++|++.|  .+++..+..|.||||+|+..|+.+++++|+++|++ +
T Consensus         3 ~~~~~-~~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~   70 (237)
T 3b7b_A            3 NFKME-HQNK-RSPLHAAA-E------AGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-V   70 (237)
T ss_dssp             CCCCS-SCCS-CCHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-C
T ss_pred             Ccccc-cCCC-CCHHHHHH-H------cCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-C
Confidence            45666 8889 99999999 9      99999999999999  89999999999999999999999999999999998 7


Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHH
Q 014730          100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEAT-NGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVL  178 (419)
Q Consensus       100 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l  178 (419)
                      +.++..|.||||+|+..|+.+++++|++.| .+++. .+..|.||||.|+..++.+++++|++.|+++. .++..|    
T Consensus        71 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g----  144 (237)
T 3b7b_A           71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC-QDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEE----  144 (237)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS----
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCC----
Confidence            889999999999999999999999999998 78888 89999999999999999999999999987754 221111    


Q ss_pred             HHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHH
Q 014730          179 NTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITA  258 (419)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (419)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (237)
T 3b7b_A          145 --------------------------------------------------------------------------------  144 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHH
Q 014730          259 IFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIM  338 (419)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~  338 (419)
                                                                                 .||||.|+..|+.+++++|++
T Consensus       145 -----------------------------------------------------------~t~L~~A~~~~~~~~~~~Ll~  165 (237)
T 3b7b_A          145 -----------------------------------------------------------NICLHWAAFSGCVDIAEILLA  165 (237)
T ss_dssp             -----------------------------------------------------------CCHHHHHHHHCCHHHHHHHHT
T ss_pred             -----------------------------------------------------------CCHHHHHHHCCCHHHHHHHHH
Confidence                                                                       568888888999999999999


Q ss_pred             hcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCCCCCCchHHHHHhhh
Q 014730          339 AYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSEVAGAALQMQRELQ  415 (419)
Q Consensus       339 ~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~~~~~~~~~~~~~~~  415 (419)
                      . |++++..+..|+||||+|+++++.+++++|+++   +.+++.+|.+|+||||+|++.|..    ...+||.++|+
T Consensus       166 ~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~~~----~~~~~l~~~l~  234 (237)
T 3b7b_A          166 A-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR---DSDVTLKNKEGETPLQCASLNSQV----WSALQMSKALQ  234 (237)
T ss_dssp             T-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHSCTTCHH----HHHHHHHHHHH
T ss_pred             c-CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc---CCCCCccCCCCCCHHHHHHHHHHH----HHHHHHHHHhh
Confidence            9 999999999999999999999999999999999   667889999999999999988764    37888888875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=291.61  Aligned_cols=153  Identities=17%  Similarity=0.128  Sum_probs=126.1

Q ss_pred             CccCCChHHHHHHHHhC----------CcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCC
Q 014730            1 MIEKNDWPGVEDFVTNH----------PDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDN   70 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~----------~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~   70 (419)
                      |++.|+.+.+..++...          ...++.+ +..| .||||+|| .      .|+.+++++|++.|  .+++.+|.
T Consensus        22 Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g-~t~L~~Aa-~------~g~~~~v~~Ll~~g--~~~~~~~~   90 (285)
T 3d9h_A           22 ASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSD-WSPMHEAA-I------HGHQLSLRNLISQG--WAVNIITA   90 (285)
T ss_dssp             --------------------CCSEECCCCTTCSS-SCCS-CCHHHHHH-H------TTCHHHHHHHHHTT--CCSCEECT
T ss_pred             HhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccC-CCHHHHHH-H------cCCHHHHHHHHHCC--CCCCCcCC
Confidence            68889988888766542          2234566 8889 99999999 9      99999999999999  89999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHc
Q 014730           71 HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAA  150 (419)
Q Consensus        71 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~  150 (419)
                      .|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|++.|++++.  +..|.||||+|+..
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARR  167 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHc
Confidence            999999999999999999999999999 799999999999999999999999999999998876  44599999999999


Q ss_pred             CcHHHHHHHHhhCCCCC
Q 014730          151 NLYDVALDLLKLHPTIG  167 (419)
Q Consensus       151 ~~~~~~~~Ll~~~~~~~  167 (419)
                      |+.+++++|++.|+++.
T Consensus       168 g~~~~v~~Ll~~g~~~~  184 (285)
T 3d9h_A          168 GHVECVNSLIAYGGNID  184 (285)
T ss_dssp             TCHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHHHCCCCCC
Confidence            99999999999988765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.1e-38  Score=290.91  Aligned_cols=251  Identities=14%  Similarity=0.069  Sum_probs=180.4

Q ss_pred             ccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCcc---ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 014730           22 TAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQT---LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDL   98 (419)
Q Consensus        22 ~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~   98 (419)
                      +.+ |..| .||||+|| .      .|+.+++++|++.|  .+   ++.+|..|.||||+|+..|+.+++++|+++|++ 
T Consensus         3 ~~~-d~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-   70 (282)
T 1oy3_D            3 GYV-TEDG-DTALHLAV-I------HQHEPFLDFLLGFS--AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-   70 (282)
T ss_dssp             CCC-CTTC-CCHHHHHH-H------TTCHHHHHHHHHHH--TTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred             Ccc-CCCC-CcHHHHHH-H------cCCHHHHHHHHhcC--CCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            455 8999 99999999 9      99999999999998  65   888999999999999999999999999999999 


Q ss_pred             CccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccc------------cCCCCCcHHHHHHHcCcHH-HHHHHHhhCCC
Q 014730           99 TNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY------------RGNDGAMVLLFLIAANLYD-VALDLLKLHPT  165 (419)
Q Consensus        99 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~------------~~~~g~t~l~~a~~~~~~~-~~~~Ll~~~~~  165 (419)
                      ++.++..|.||||+|+..|+.+++++|++.|++....            ....+.++++.+...+... ....+...+.+
T Consensus        71 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (282)
T 1oy3_D           71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ  150 (282)
T ss_dssp             SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG
T ss_pred             CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc
Confidence            7999999999999999999999999999998764331            1223455666555544333 33333334455


Q ss_pred             CCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCC
Q 014730          166 IGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPK  245 (419)
Q Consensus       166 ~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (419)
                      +. ..+..|.||||+|+..+.                                                           
T Consensus       151 ~~-~~~~~g~t~L~~A~~~g~-----------------------------------------------------------  170 (282)
T 1oy3_D          151 LE-AENYDGHTPLHVAVIHKD-----------------------------------------------------------  170 (282)
T ss_dssp             TT-CCCTTSCCHHHHHHHTTC-----------------------------------------------------------
T ss_pred             CC-CcCCCCcCHHHHHHHcCC-----------------------------------------------------------
Confidence            55 678889999999888632                                                           


Q ss_pred             CCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchh---hhhHHHH
Q 014730          246 ESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSA---QLSGAML  322 (419)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~t~L~  322 (419)
                                                                        .++++.|++.+.  +++..+   + .||||
T Consensus       171 --------------------------------------------------~~~v~~Ll~~g~--~~~~~~~~~g-~tpL~  197 (282)
T 1oy3_D          171 --------------------------------------------------AEMVRLLRDAGA--DLNKPEPTCG-RTPLH  197 (282)
T ss_dssp             --------------------------------------------------HHHHHHHHHHTC--CTTCCCTTTC-CCHHH
T ss_pred             --------------------------------------------------HHHHHHHHHcCC--CCCCCCCCCC-cCHHH
Confidence                                                              133334444443  333322   3 89999


Q ss_pred             HHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          323 SAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       323 ~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +|+..|+.++|++|++. |++++.++..|+||||+|+.+++.+++++|+++   +.+++.+|..|.|||++|....+.+
T Consensus       198 ~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~a~~~~~~~  272 (282)
T 1oy3_D          198 LAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAH---GAPEPEDGGDKLSPCSSSGSDSDSD  272 (282)
T ss_dssp             HHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT---TCCCCCCC-----------------
T ss_pred             HHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHc---CCCcCcCCCcccccccccCCccccc
Confidence            99999999999999999 999999999999999999999999999999999   6778999999999999999887655

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.2e-37  Score=279.25  Aligned_cols=219  Identities=15%  Similarity=0.094  Sum_probs=189.7

Q ss_pred             ccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHh----hCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 014730           22 TAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLAT----KVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPD   97 (419)
Q Consensus        22 ~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~   97 (419)
                      +.+ |.+| .||||+|| .      .|+.+++++|++    .+  .+++..|..|.||||+|+..|+.+++++|+++|++
T Consensus         3 ~~~-d~~g-~t~L~~A~-~------~g~~~~v~~Ll~~~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   71 (241)
T 1k1a_A            3 TRA-DEDG-DTPLHIAV-V------QGNLPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS   71 (241)
T ss_dssp             -----CTT-CCHHHHHH-H------TTCHHHHHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccc-CCCC-CcHHHHHH-H------cCCHHHHHHHHHHHHhcC--CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            345 8899 99999999 9      999999999997    56  88999999999999999999999999999999999


Q ss_pred             CCccCCCCCchHHHHHHHcCCHHHHHHHHhcCC----CCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCC-C
Q 014730           98 LTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN----GVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNI-D  172 (419)
Q Consensus        98 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~  172 (419)
                       ++.++..|.||||+|+..|+.+++++|++.|+    +++. .+..|.||||.|+..|+.+++++|++.|+++. ..+ .
T Consensus        72 -~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~  148 (241)
T 1k1a_A           72 -PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RNYDGLTALHVAVNTECQETVQLLLERGADID-AVDIK  148 (241)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             -ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccc-cCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccccc
Confidence             78999999999999999999999999999998    6677 88999999999999999999999999988765 221 1


Q ss_pred             CCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCC
Q 014730          173 SRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGS  252 (419)
Q Consensus       173 ~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (419)
                      .|                                                                              
T Consensus       149 ~g------------------------------------------------------------------------------  150 (241)
T 1k1a_A          149 SG------------------------------------------------------------------------------  150 (241)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             hhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHH
Q 014730          253 TQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEV  332 (419)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~  332 (419)
                                                                                       .||||.|+..|+.++
T Consensus       151 -----------------------------------------------------------------~t~L~~A~~~~~~~~  165 (241)
T 1k1a_A          151 -----------------------------------------------------------------RSPLIHAVENNSLSM  165 (241)
T ss_dssp             -----------------------------------------------------------------CCHHHHHHHTTCHHH
T ss_pred             -----------------------------------------------------------------CcHHHHHHHcCCHHH
Confidence                                                                             568888888888888


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          333 VNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       333 v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +++|++. |++++..+..|+||||+|+.+++.+++++|+++   +.+++.+|..|+||||+|++.|..+
T Consensus       166 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~  230 (241)
T 1k1a_A          166 VQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVID  230 (241)
T ss_dssp             HHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             HHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCcCCCCCCHHHHHHhcCcHH
Confidence            8888888 888888888888888888888888888888888   5667888888888888888776543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.4e-38  Score=297.71  Aligned_cols=276  Identities=18%  Similarity=0.141  Sum_probs=224.3

Q ss_pred             ccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q 014730           20 ALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLT   99 (419)
Q Consensus        20 ~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~   99 (419)
                      ..+.. +..| .|+||.|+ .      .|+.+.++.|+... +.+++..|..|.||||+|+..|+.+++++|+++|++ +
T Consensus        16 ~~~~~-~~~~-~~~L~~A~-~------~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~   84 (351)
T 3utm_A           16 KAVLT-GEYK-KDELLEAA-R------SGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-V   84 (351)
T ss_dssp             HHHHH-HHHH-HHHHHHHH-H------HTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred             eeeee-cccc-chhHHHHH-H------cCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C
Confidence            33344 6678 99999999 9      99999999999874 488999999999999999999999999999999999 7


Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHH
Q 014730          100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLN  179 (419)
Q Consensus       100 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  179 (419)
                      +.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|+++. ..+..|.+|++
T Consensus        85 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~  162 (351)
T 3utm_A           85 HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVD  162 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchH
Confidence            99999999999999999999999999999999999 99999999999999999999999999999987 88999999999


Q ss_pred             HHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHH
Q 014730          180 TLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAI  259 (419)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (419)
                      +++....          ...+.+.                                                        
T Consensus       163 ~a~~~~~----------~~~~~~~--------------------------------------------------------  176 (351)
T 3utm_A          163 MAPTPEL----------RERLTYE--------------------------------------------------------  176 (351)
T ss_dssp             HCSSHHH----------HHHHHHH--------------------------------------------------------
T ss_pred             HHhhhhh----------HHHHHhh--------------------------------------------------------
Confidence            8764310          0000000                                                        


Q ss_pred             HhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHh---ChHHHHHHH
Q 014730          260 FGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAIL---GIPEVVNEF  336 (419)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~---g~~e~v~~L  336 (419)
                                .         .+...+.+...+..   ..+..+...... .........||||.|+..   +..+++++|
T Consensus       177 ----------~---------~~~~~~~~~~~~~~---~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~L  233 (351)
T 3utm_A          177 ----------F---------KGHSLLQAAREADL---AKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELL  233 (351)
T ss_dssp             ----------H---------HHHHHHHHHHTTCH---HHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHH
T ss_pred             ----------h---------cccHHHHHHHhccH---HHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHH
Confidence                      0         00111122222222   222222222210 221222228999999999   679999999


Q ss_pred             HHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          337 IMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       337 l~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      ++. |++++.++..|+||||+|+.+++.+++++|+++   +.+++.+|..|+||||+|++.|+.+
T Consensus       234 l~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~t~L~~A~~~~~~~  294 (351)
T 3utm_A          234 LRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNALDSLGQTALHRAALAGHLQ  294 (351)
T ss_dssp             HHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            999 999999999999999999999999999999999   6788999999999999999998865

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8e-39  Score=306.06  Aligned_cols=248  Identities=16%  Similarity=0.121  Sum_probs=209.7

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccC-CCCChHHHHHHHcCCHHHHHHHH--------hcCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD-NHGHTAVIFCAAKGNLKALKVLL--------KYNP   96 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll--------~~~~   96 (419)
                      +..| .||||+|+ .      .+. +++++|+.    ..++..| ..|.||||+|+..|+.+++++|+        +.|+
T Consensus        91 ~~~g-~t~L~~Aa-~------~~~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga  157 (373)
T 2fo1_E           91 EPES-PIKLHTEA-A------GSY-AITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA  157 (373)
T ss_dssp             ---C-CCHHHHHH-H------SSS-CCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC
T ss_pred             CCCC-ccHHHHHh-c------CCc-hHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC
Confidence            7789 99999999 7      665 77887764    4578888 79999999999999998877776        7899


Q ss_pred             CCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhC---CCCCcCCCCC
Q 014730           97 DLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH---PTIGRDNIDS  173 (419)
Q Consensus        97 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~  173 (419)
                      + ++.+|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+   .++. ..|..
T Consensus       158 ~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~  234 (373)
T 2fo1_E          158 D-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRN  234 (373)
T ss_dssp             C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTT
T ss_pred             C-CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc-cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCC
Confidence            8 899999999999999999999999999999999999 9999999999999999999999999987   5666 78999


Q ss_pred             CCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCCh
Q 014730          174 RRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGST  253 (419)
Q Consensus       174 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (419)
                      |.||||+|+..+...    .                                                            
T Consensus       235 g~t~L~~A~~~~~~~----~------------------------------------------------------------  250 (373)
T 2fo1_E          235 GMTALMIVAHNEGRD----Q------------------------------------------------------------  250 (373)
T ss_dssp             SCCHHHHHHHSCSTT----H------------------------------------------------------------
T ss_pred             CCCHHHHHHHhCCcc----h------------------------------------------------------------
Confidence            999999998863100    0                                                            


Q ss_pred             hhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccc----------hhhhhHHHHH
Q 014730          254 QQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQK----------SAQLSGAMLS  323 (419)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----------~~~~~t~L~~  323 (419)
                                                                +++++.|++.+.  +++.          ..+ .||||+
T Consensus       251 ------------------------------------------~~~v~~Ll~~g~--~~~~~~~~~~~~~d~~g-~t~Lh~  285 (373)
T 2fo1_E          251 ------------------------------------------VASAKLLVEKGA--KVDYDGAARKDSEKYKG-RTALHY  285 (373)
T ss_dssp             ------------------------------------------HHHHHHHHHHTC--CSSCCSGGGTSSSSCCC-CCTHHH
T ss_pred             ------------------------------------------HHHHHHHHHCCC--CcccccccccCcccccC-CCHHHH
Confidence                                                      123333333333  2221          122 799999


Q ss_pred             HHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          324 AAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       324 A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      |+..|+.++|++|++.++++++.++..|+||||+|+.+++.+++++|+++   +.+++.+|..|+||||+|++.|+.+
T Consensus       286 A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~  360 (373)
T 2fo1_E          286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHN  360 (373)
T ss_dssp             HHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             HHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999983499999999999999999999999999999999   6788999999999999999998865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-37  Score=281.78  Aligned_cols=228  Identities=19%  Similarity=0.202  Sum_probs=161.1

Q ss_pred             ccccccCCCCCccHHHHHHHhhcccCCCc-------------hHHHHHHHHhhCCCccccc-cCCCCChHHHHHHHcCCH
Q 014730           20 ALTAKIVEPGSKTIFHTIAELLVDDDSDE-------------ATCLLDKLATKVDPQTLAR-QDNHGHTAVIFCAAKGNL   85 (419)
Q Consensus        20 ~~~~~~~~~g~~t~L~~A~~~~~~~~~~g-------------~~~~v~~Ll~~~~~~~~~~-~~~~g~t~L~~A~~~g~~   85 (419)
                      ++|.+ |.+| .||||+|+ .      .|             +.+++++|++.|  .+++. .|..|.||||+|+..|+.
T Consensus         2 dvn~~-d~~g-~tpL~~A~-~------~g~~~~~~~~~~~~~~~~~v~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~g~~   70 (253)
T 1yyh_A            2 DVNVR-GPDG-FTPLMIAS-C------SGGGLETGNSEEEEDAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRS   70 (253)
T ss_dssp             -------------------------------------------------------------CCCTTSCCHHHHHHHTTCH
T ss_pred             CCCCC-CCCC-CcHHHHHH-h------ccccccccchhhcCCChHHHHHHHHcc--CCcccccCCCCCcHHHHHHHcCCH
Confidence            57788 9999 99999999 8      77             899999999999  66654 589999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCC-CCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCC
Q 014730           86 KALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN-GVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHP  164 (419)
Q Consensus        86 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  164 (419)
                      +++++|+++|++ ++.++..|.||||+|+..|+.+++++|++.|+ +++. .+..|.||||+|+..|+.+++++|++.|+
T Consensus        71 ~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  148 (253)
T 1yyh_A           71 DAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHA  148 (253)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC-CCTTCCCHHHHHHHHTCSSHHHHHHHTTC
T ss_pred             HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCCcHHHHHHHcChHHHHHHHHHcCC
Confidence            999999999999 79999999999999999999999999999987 7888 89999999999999999999999999999


Q ss_pred             CCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCC
Q 014730          165 TIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHP  244 (419)
Q Consensus       165 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (419)
                      ++. .+|..|.||||+|+..+.                                                          
T Consensus       149 ~~~-~~d~~g~t~L~~A~~~~~----------------------------------------------------------  169 (253)
T 1yyh_A          149 DVN-AVDDLGKSALHWAAAVNN----------------------------------------------------------  169 (253)
T ss_dssp             CTT-CBCTTSCBHHHHHHHHTC----------------------------------------------------------
T ss_pred             CCC-CcCCCCCCHHHHHHHcCC----------------------------------------------------------
Confidence            887 788888888888877531                                                          


Q ss_pred             CCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccch--hhhhHHHH
Q 014730          245 KESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKS--AQLSGAML  322 (419)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~t~L~  322 (419)
                                                                         .++++.|++.+.  +++..  .+ .||||
T Consensus       170 ---------------------------------------------------~~~v~~Ll~~ga--~~~~~~~~g-~tpL~  195 (253)
T 1yyh_A          170 ---------------------------------------------------VDAAVVLLKNGA--NKDMQNNRE-ETPLF  195 (253)
T ss_dssp             ---------------------------------------------------HHHHHHHHHTTC--CTTCCCTTS-CCHHH
T ss_pred             ---------------------------------------------------HHHHHHHHHcCC--CCCCcCCCC-CCHHH
Confidence                                                               123333344433  33222  22 78888


Q ss_pred             HHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          323 SAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       323 ~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      +|+..|+.++|++|++. |++++.++..|+||||+|+++++.+++++|....
T Consensus       196 ~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          196 LAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             HHHHCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            88888888888888888 8888888888888888888888888888888773

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.8e-37  Score=295.76  Aligned_cols=255  Identities=13%  Similarity=0.039  Sum_probs=213.5

Q ss_pred             cccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 014730           19 DALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDL   98 (419)
Q Consensus        19 ~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~   98 (419)
                      .+.+.. |..| .||||+|| .      .|+.++|++|++.|  .+++..|..|.||||+|+..|+.+++++|+++|++ 
T Consensus        11 ~~~~~~-d~~g-~t~L~~Aa-~------~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-   78 (364)
T 3ljn_A           11 LNRIKS-DDEN-MEKIHVAA-R------KGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-   78 (364)
T ss_dssp             -----C-CHHH-HHHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC-
T ss_pred             CCcccc-CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            344555 8889 99999999 9      99999999999999  99999999999999999999999999999999986 


Q ss_pred             CccCCCCCchHHHHHHHcCCHHHHHHHHhc----CCCCccc----------------cCCCCCcHHHHHHHcC--cHHHH
Q 014730           99 TNIRDSDGYLPVHNAAYYGHKDTFQYLLEA----TNGVDIY----------------RGNDGAMVLLFLIAAN--LYDVA  156 (419)
Q Consensus        99 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~----g~~~~~~----------------~~~~g~t~l~~a~~~~--~~~~~  156 (419)
                      +  .+..|.||||+|+..|+.+++++|++.    |++++..                .+..|.||||+|+..|  +.+++
T Consensus        79 ~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v  156 (364)
T 3ljn_A           79 H--SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI  156 (364)
T ss_dssp             C--CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHH
T ss_pred             c--cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHH
Confidence            2  345799999999999999999999999    6665431                4567999999999999  99999


Q ss_pred             HHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcc
Q 014730          157 LDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENF  236 (419)
Q Consensus       157 ~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (419)
                      ++|++.|+++. ..|..|.||||+|+..+..                                                 
T Consensus       157 ~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~-------------------------------------------------  186 (364)
T 3ljn_A          157 KILVQLGASPT-AKDKADETPLMRAMEFRNR-------------------------------------------------  186 (364)
T ss_dssp             HHHHHHTCCTT-CCCTTSCCHHHHHHHTTCH-------------------------------------------------
T ss_pred             HHHHHcCCCCc-ccCCCCCCHHHHHHHcCCH-------------------------------------------------
Confidence            99999999987 8999999999999986421                                                 


Q ss_pred             ccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhcc-----c
Q 014730          237 TVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTN-----F  311 (419)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~  311 (419)
                                                                                  ++++.|++.+.  +     +
T Consensus       187 ------------------------------------------------------------~~v~~Ll~~g~--~~~~~~~  204 (364)
T 3ljn_A          187 ------------------------------------------------------------EALDLMMDTVP--SKSSLRL  204 (364)
T ss_dssp             ------------------------------------------------------------HHHHHHHHHCS--CSSSCCT
T ss_pred             ------------------------------------------------------------HHHHHHHhccc--ccccccc
Confidence                                                                        23333344332  2     2


Q ss_pred             c--chhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc-cc--------ccee
Q 014730          312 Q--KSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN-FT--------TFLF  380 (419)
Q Consensus       312 ~--~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~-~~--------~~~~  380 (419)
                      +  ...+ .||||+|+..|+.++|++|++. |++++..+..|+||||+|+.+++.+++++|++++ ..        ....
T Consensus       205 ~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  282 (364)
T 3ljn_A          205 DYANKQG-NSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTT  282 (364)
T ss_dssp             TCCCTTC-CCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSS
T ss_pred             cccCCCC-CcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccc
Confidence            2  2223 8999999999999999999999 9999999999999999999999999999999995 11        1223


Q ss_pred             eeccCCCCccchhcccccCCC
Q 014730          381 SSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       381 ~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      ...+..|+|||++|+..|...
T Consensus       283 ~~~~~~~~~~l~~aa~~~~~~  303 (364)
T 3ljn_A          283 VLPDRVVWLDFVPAAADPSKQ  303 (364)
T ss_dssp             BCGGGCCCCTTSCSSCCHHHH
T ss_pred             ccccccccccchhhhhccCHH
Confidence            347889999999999887644

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7.5e-37  Score=283.25  Aligned_cols=259  Identities=17%  Similarity=0.211  Sum_probs=208.7

Q ss_pred             ccCCChHHHHHHHHhCCccccc--------ccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCC
Q 014730            2 IEKNDWPGVEDFVTNHPDALTA--------KIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGH   73 (419)
Q Consensus         2 ~~~g~~~~v~~ll~~~~~~~~~--------~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~   73 (419)
                      +..|..+.++.++..... +..        .++..| .||||.|| .      .|+.+++++|++.|  .+++..|..|.
T Consensus         6 a~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-~t~l~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~   74 (299)
T 1s70_B            6 AKQKRNEQLKRWIGSETD-LEPPVVKRKKTKVKFDD-GAVFLAAC-S------SGDTEEVLRLLERG--ADINYANVDGL   74 (299)
T ss_dssp             HHHHHHHHHHHHHHTTTS-SCCSCCCCSCCCCEECH-HHHHHHHH-H------HTCHHHHHHHHHHC--CCTTCBCTTCC
T ss_pred             HHHHHHHHHHHHHccccc-cccccccCcccccccCC-ccHHHHHH-H------cCCHHHHHHHHHcC--CCCcccCCCCC
Confidence            455667778888876322 211        113356 79999999 9      99999999999999  89999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcH
Q 014730           74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLY  153 (419)
Q Consensus        74 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~  153 (419)
                      ||||+||..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++.
T Consensus        75 t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~  152 (299)
T 1s70_B           75 TALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAME  152 (299)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHhcchH
Confidence            999999999999999999999999 799999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHhhC-CCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCC
Q 014730          154 DVALDLLKLH-PTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGD  232 (419)
Q Consensus       154 ~~~~~Ll~~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (419)
                      +++++++... .++. ..+..+.++                                                       
T Consensus       153 ~~~~~ll~~~~~~~~-~~~~~~~~~-------------------------------------------------------  176 (299)
T 1s70_B          153 ELLQNEVNRQGVDIE-AARKEEERI-------------------------------------------------------  176 (299)
T ss_dssp             HHHHHHHHHHTCCHH-HHHHHHHHH-------------------------------------------------------
T ss_pred             HHHHHHHhhcCCCch-hhhhhhhhH-------------------------------------------------------
Confidence            9999998753 2211 000000000                                                       


Q ss_pred             CCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhcccc
Q 014730          233 TENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQ  312 (419)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  312 (419)
                                                                                    .......+..........
T Consensus       177 --------------------------------------------------------------~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          177 --------------------------------------------------------------MLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             --------------------------------------------------------------HHHHHHHHHHHTCCCCCC
T ss_pred             --------------------------------------------------------------HHHHHHHHHhccCcchhh
Confidence                                                                          001111111221100111


Q ss_pred             c-hhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccc
Q 014730          313 K-SAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNIL  391 (419)
Q Consensus       313 ~-~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~L  391 (419)
                      . ..+ .||||+|+..|+.++|++|++. |++++..+..|+||||+|+.+++.+++++|+++   +.+++.+|..|+|||
T Consensus       195 ~~~~g-~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l  269 (299)
T 1s70_B          195 HAKSG-GTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN---LCDMEAVNKVGQTAF  269 (299)
T ss_dssp             CTTTC-CCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCTT
T ss_pred             hcCCC-CCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc---CCCCCCcCCCCCCHH
Confidence            1 122 7999999999999999999999 999999999999999999999999999999999   677899999999999


Q ss_pred             hhccc
Q 014730          392 HLAGR  396 (419)
Q Consensus       392 h~A~~  396 (419)
                      |+|++
T Consensus       270 ~~A~~  274 (299)
T 1s70_B          270 DVADE  274 (299)
T ss_dssp             TSCCS
T ss_pred             HHHHH
Confidence            99975

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6.2e-36  Score=265.83  Aligned_cols=210  Identities=16%  Similarity=0.205  Sum_probs=185.3

Q ss_pred             CCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccc-cccCCCCChHHHHHHHcCCHHHHHHHHhcC--CCCCcc-CCC
Q 014730           29 GSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTL-ARQDNHGHTAVIFCAAKGNLKALKVLLKYN--PDLTNI-RDS  104 (419)
Q Consensus        29 g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~--~~~~~~-~~~  104 (419)
                      | .||||.|| .      .|+.+++++|++.+  ... +..|..|.||||+|+..|+.+++++|++++  ++ ++. .+.
T Consensus         2 g-~t~L~~A~-~------~g~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~   70 (228)
T 2dzn_A            2 S-NYPLHQAC-M------ENEFFKVQELLHSK--PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDD   70 (228)
T ss_dssp             --CCHHHHHH-H------TTCHHHHHHHHHHC--GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCT
T ss_pred             C-ccHHHHHH-H------hCCHHHHHHHHhcC--ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCC
Confidence            5 89999999 9      99999999999999  544 458999999999999999999999999999  55 344 788


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcC--CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 014730          105 DGYLPVHNAAYYGHKDTFQYLLEAT--NGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLS  182 (419)
Q Consensus       105 ~g~t~L~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  182 (419)
                      .|.||||+|+..|+.+++++|++.|  ++++. .+..|.||||.|+..|+.+++++|++.|+++. .++..|        
T Consensus        71 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g--------  140 (228)
T 2dzn_A           71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFN--------  140 (228)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTS--------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccc-CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCC--------
Confidence            9999999999999999999999999  77777 88999999999999999999999999988765 232222        


Q ss_pred             hCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhh
Q 014730          183 QKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGL  262 (419)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (419)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (228)
T 2dzn_A          141 --------------------------------------------------------------------------------  140 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcC-
Q 014730          263 MFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYD-  341 (419)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~-  341 (419)
                                                                             .||||+|+..|+.+++++|++. | 
T Consensus       141 -------------------------------------------------------~t~L~~A~~~~~~~~v~~Ll~~-g~  164 (228)
T 2dzn_A          141 -------------------------------------------------------QIPLHRAASVGSLKLIELLCGL-GK  164 (228)
T ss_dssp             -------------------------------------------------------CCHHHHHHHTTCHHHHHHHHTT-TC
T ss_pred             -------------------------------------------------------CCHHHHHHHcCCHHHHHHHHhc-Cc
Confidence                                                                   5677888888889999999999 7 


Q ss_pred             CccccccCCCCchHHHHHhhchHHHHHHHh-hcccccceeeeccCCCCccchhccccc
Q 014730          342 SCSNWSNQDGHTIFDHAVLHRREKVFNLIQ-GVNFTTFLFSSRDKSGNNILHLAGRLV  398 (419)
Q Consensus       342 ~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~-~~~~~~~~~~~~D~~G~t~Lh~A~~~~  398 (419)
                      ++++.++..|+||||+|+..++.+++++|+ +.   +.+++.+|.+|.||||+|++.+
T Consensus       165 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCSSTT
T ss_pred             ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHHHHH
Confidence            899999999999999999999999999999 55   6788999999999999998653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-37  Score=279.66  Aligned_cols=148  Identities=18%  Similarity=0.126  Sum_probs=104.3

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCC------ccccccCCCCChHHHHHHHcCCHH-HHHHHHhcCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDP------QTLARQDNHGHTAVIFCAAKGNLK-ALKVLLKYNPDL   98 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~------~~~~~~~~~g~t~L~~A~~~g~~~-~~~~Ll~~~~~~   98 (419)
                      |..+ .+||+.|| .      .|+.++|++|++.|..      ..++..+..|.|||+.|+..+..+ ++++|++.|++ 
T Consensus         8 d~~~-~~~L~~A~-~------~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-   78 (269)
T 4b93_B            8 DYRE-VEKLLRAV-A------DGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-   78 (269)
T ss_dssp             CCHH-HHHHHHHH-H------TTCHHHHHHHHTCC----------------------------------------CCCC-
T ss_pred             Cccc-hhHHHHHH-H------cCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-
Confidence            6677 89999999 9      9999999999998821      125667888999999999887764 78999999999 


Q ss_pred             CccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHH
Q 014730           99 TNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVL  178 (419)
Q Consensus        99 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l  178 (419)
                      ++.+|.+|.||||+|+..|+.+++++|++.|++++. .+..|.||++.|+..++.+++++|++.|+++. .+|..|.|||
T Consensus        79 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL  156 (269)
T 4b93_B           79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPL  156 (269)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHH
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc-cCCCCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHH
Confidence            899999999999999999999999999999999999 99999999999999999999999999998876 5666666665


Q ss_pred             HHHHhC
Q 014730          179 NTLSQK  184 (419)
Q Consensus       179 ~~a~~~  184 (419)
                      |+|+..
T Consensus       157 ~~A~~~  162 (269)
T 4b93_B          157 IYACSG  162 (269)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            555554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.6e-36  Score=268.01  Aligned_cols=221  Identities=16%  Similarity=0.139  Sum_probs=180.1

Q ss_pred             CCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCc
Q 014730           28 PGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGY  107 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~  107 (419)
                      .+ .+|||.|+ .      .|+.+.++.|++.+ +..++..|..|.||||+|+..|+.+++++|+++|++ ++.++..|.
T Consensus         5 ~~-~~~l~~A~-~------~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~   74 (231)
T 3aji_A            5 VS-NIMICNLA-Y------SGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGW   74 (231)
T ss_dssp             CS-SSHHHHHH-H------HTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSC
T ss_pred             cc-cchHHHHH-H------hCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCC
Confidence            45 78888888 8      88888888888887 345677788888888888888888888888888888 688888888


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCC
Q 014730          108 LPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYA  187 (419)
Q Consensus       108 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~  187 (419)
                      ||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.|+++. .++..|.||||+|+..+. 
T Consensus        75 t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~-  151 (231)
T 3aji_A           75 SPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGN-  151 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC-
T ss_pred             CHHHHHHHcCHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCC-
Confidence            888888888888888888888888888 88888888888888888888888888888876 778888888888876531 


Q ss_pred             CCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHH
Q 014730          188 FASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKL  267 (419)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (419)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (231)
T 3aji_A          152 --------------------------------------------------------------------------------  151 (231)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccch--hhhhHHHHHHHHhChHHHHHHHHHhcCCccc
Q 014730          268 NRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKS--AQLSGAMLSAAILGIPEVVNEFIMAYDSCSN  345 (419)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~  345 (419)
                                                  .++++.+++.+.  +++..  .+ .||||+|+..|+.+++++|++. |++++
T Consensus       152 ----------------------------~~~v~~Ll~~g~--~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~-ga~~~  199 (231)
T 3aji_A          152 ----------------------------LKMVHILLFYKA--STNIQDTEG-NTPLHLACDEERVEEAKFLVTQ-GASIY  199 (231)
T ss_dssp             ----------------------------HHHHHHHHHTTC--CSCCCCTTS-CCHHHHHHHTTCHHHHHHHHHT-TCCSC
T ss_pred             ----------------------------HHHHHHHHhcCC--CccccCCCC-CCHHHHHHHCCCHHHHHHHHHC-CCCCC
Confidence                                        122333333333  22222  22 7899999999999999999999 99999


Q ss_pred             cccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          346 WSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       346 ~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                      .++..|+||||+|+..++.+++++|.++
T Consensus       200 ~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          200 IENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             CCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            9999999999999999999999999887

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4e-36  Score=283.41  Aligned_cols=250  Identities=15%  Similarity=0.135  Sum_probs=213.8

Q ss_pred             CCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           27 EPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDN-HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        27 ~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      .+| .||||.|+ .      .|++++|++|+++|  +++|.++. .|.||||+||..|+.+++++|+++|++ ++.++..
T Consensus        23 ~~~-~t~L~~Av-~------~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~   91 (337)
T 4g8k_A           23 VED-NHLLIKAV-Q------NEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKN   91 (337)
T ss_dssp             HHH-HHHHHHHH-H------TTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             CCC-ChHHHHHH-H------cCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccC
Confidence            357 89999999 9      99999999999999  99998876 599999999999999999999999999 7999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCc---------CCCCCCCc
Q 014730          106 GYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGR---------DNIDSRRI  176 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~---------~~~~~g~~  176 (419)
                      +.+|++.++..+...++..+++.+++++. .+..|.||+|+|+..|+.+++++|++.|+++..         ..+..|.|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T  170 (337)
T 4g8k_A           92 GATPFILAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT  170 (337)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCC
T ss_pred             CCchhHHHHhcccchhhHHhhhccchhhh-hccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCc
Confidence            99999999999999999999999999999 999999999999999999999999999987641         23456889


Q ss_pred             HHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhH
Q 014730          177 VLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQI  256 (419)
Q Consensus       177 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (419)
                      |||+|+..+.                                                                      
T Consensus       171 ~L~~A~~~g~----------------------------------------------------------------------  180 (337)
T 4g8k_A          171 ALMDAAEKGH----------------------------------------------------------------------  180 (337)
T ss_dssp             HHHHHHHHTC----------------------------------------------------------------------
T ss_pred             HHHHHHHCCC----------------------------------------------------------------------
Confidence            9999887532                                                                      


Q ss_pred             HHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhh-hhhccccchhhh-hHHHHHHHHhCh----H
Q 014730          257 TAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEG-VVWTNFQKSAQL-SGAMLSAAILGI----P  330 (419)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~-~t~L~~A~~~g~----~  330 (419)
                                                             .++++.|++. +.  +++..+.. .|+++.++..+.    .
T Consensus       181 ---------------------------------------~~~v~~LL~~~ga--d~n~~d~~g~t~l~~~~~~~~~~~~~  219 (337)
T 4g8k_A          181 ---------------------------------------VEVLKILLDEMGA--DVNACDNMGRNALIHALLSSDDSDVE  219 (337)
T ss_dssp             ---------------------------------------HHHHHHHHHHSCC--CTTCCCTTSCCHHHHHHHHSCTTTHH
T ss_pred             ---------------------------------------HHHHHHHHhccCC--CcCccCCCCCcHHHHHHHHcCcccHH
Confidence                                                   1233333332 22  33222211 788887776543    4


Q ss_pred             HHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCCC
Q 014730          331 EVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSE  402 (419)
Q Consensus       331 e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~~  402 (419)
                      +++++|++. |++++.++..|+||||+|+..++.+++++|++.  .+.+++.+|.+|+||||+||+.|+.++
T Consensus       220 ~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~--~~~~vn~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          220 AITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             HHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS--TTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh--cCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence            688999999 999999999999999999999999999999998  677899999999999999999998763

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.7e-37  Score=276.46  Aligned_cols=221  Identities=15%  Similarity=0.113  Sum_probs=160.2

Q ss_pred             cccccCCCCChHHHHHHHcC-------------CHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCC
Q 014730           64 TLARQDNHGHTAVIFCAAKG-------------NLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN  130 (419)
Q Consensus        64 ~~~~~~~~g~t~L~~A~~~g-------------~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~  130 (419)
                      ++|.+|..|.||||+|+..|             +.+++++|++.|+++.+..+..|.||||+|+..|+.+++++|++.|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            57889999999999999977             89999999999999556668999999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCC
Q 014730          131 GVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSC  210 (419)
Q Consensus       131 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (419)
                      +++. .+..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..+..                       
T Consensus        82 ~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-----------------------  137 (253)
T 1yyh_A           82 DANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE-----------------------  137 (253)
T ss_dssp             CTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS-----------------------
T ss_pred             CCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH-----------------------
Confidence            9999 9999999999999999999999999998733338899999999999886421                       


Q ss_pred             CCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhh
Q 014730          211 IPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKL  290 (419)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (419)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (253)
T 1yyh_A          138 --------------------------------------------------------------------------------  137 (253)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHhHHHHHHHHHhhhhhccccch--hhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHH
Q 014730          291 THMRTVEIVRIICEGVVWTNFQKS--AQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFN  368 (419)
Q Consensus       291 ~~~~~~~~l~~l~~~~~~~~~~~~--~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~  368 (419)
                            ++++.+++.+.  +++..  .+ .||||+|+..|+.++|++|++. |++++..+..|+||||+|+.+++.++++
T Consensus       138 ------~~v~~Ll~~g~--~~~~~d~~g-~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          138 ------GMLEDLINSHA--DVNAVDDLG-KSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             ------SHHHHHHHTTC--CTTCBCTTS-CBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             ------HHHHHHHHcCC--CCCCcCCCC-CCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence                  12222333332  33222  22 8999999999999999999999 9999999999999999999999999999


Q ss_pred             HHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          369 LIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       369 ~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +|+++   +.+++.+|..|+||||+|++.|+.+
T Consensus       208 ~Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~~  237 (253)
T 1yyh_A          208 VLLDH---FANRDITDHMDRLPRDIAQERMHHD  237 (253)
T ss_dssp             HHHHT---TCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHc---CCCccccccCCCCHHHHHHHcCCHH
Confidence            99999   5678899999999999999999866

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.2e-36  Score=265.66  Aligned_cols=215  Identities=19%  Similarity=0.173  Sum_probs=188.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 014730           69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLI  148 (419)
Q Consensus        69 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~  148 (419)
                      +..+.+|||.|+..|+.+.++.|++.++..++.++..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~   81 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAA   81 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC-cCCCCCCHHHHHH
Confidence            456889999999999999999999998776788899999999999999999999999999999999 9999999999999


Q ss_pred             HcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCC
Q 014730          149 AANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQN  228 (419)
Q Consensus       149 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (419)
                      ..|+.+++++|++.|+++. ..+..|.||||+|+..+..                                         
T Consensus        82 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~-----------------------------------------  119 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRH-----------------------------------------  119 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH-----------------------------------------
T ss_pred             HcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCH-----------------------------------------
Confidence            9999999999999999987 8899999999999986421                                         


Q ss_pred             CCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhh
Q 014730          229 VDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVW  308 (419)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  308 (419)
                                                                                          ++++.+++.+. 
T Consensus       120 --------------------------------------------------------------------~~~~~Ll~~g~-  130 (231)
T 3aji_A          120 --------------------------------------------------------------------EIAVMLLEGGA-  130 (231)
T ss_dssp             --------------------------------------------------------------------HHHHHHHHTTC-
T ss_pred             --------------------------------------------------------------------HHHHHHHHcCC-
Confidence                                                                                23333344433 


Q ss_pred             ccccchhhh-hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCC
Q 014730          309 TNFQKSAQL-SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSG  387 (419)
Q Consensus       309 ~~~~~~~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G  387 (419)
                       +++..+.. .||||.|+..|+.+++++|++. +++++.++..|+||||+|+.+++.+++++|+++   +.+++.+|..|
T Consensus       131 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g  205 (231)
T 3aji_A          131 -NPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEE  205 (231)
T ss_dssp             -CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTS
T ss_pred             -CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCC
Confidence             32222111 8999999999999999999999 999999999999999999999999999999999   66788999999


Q ss_pred             CccchhcccccCC
Q 014730          388 NNILHLAGRLVPS  400 (419)
Q Consensus       388 ~t~Lh~A~~~~~~  400 (419)
                      .||||+|++.+..
T Consensus       206 ~t~l~~A~~~~~~  218 (231)
T 3aji_A          206 KTPLQVAKGGLGL  218 (231)
T ss_dssp             CCHHHHSCHHHHH
T ss_pred             CCHHHHHHhhHHH
Confidence            9999999976653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.4e-37  Score=291.67  Aligned_cols=238  Identities=16%  Similarity=0.175  Sum_probs=204.7

Q ss_pred             HHHHHHHHhCCcccccccC-CCCCccHHHHHHHhhcccCCCchHHHHHHHH--------hhCCCccccccCCCCChHHHH
Q 014730            8 PGVEDFVTNHPDALTAKIV-EPGSKTIFHTIAELLVDDDSDEATCLLDKLA--------TKVDPQTLARQDNHGHTAVIF   78 (419)
Q Consensus         8 ~~v~~ll~~~~~~~~~~~~-~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~g~t~L~~   78 (419)
                      ++++.|+.   .++|.+ + ..| .||||+|| .      .|+.+++++|+        +.|  ++++.+|..|.||||+
T Consensus       107 ~~~~~L~~---~~~n~~-d~~~g-~t~Lh~Aa-~------~g~~~~v~~Ll~~~~~~ll~~g--a~vn~~d~~g~TpL~~  172 (373)
T 2fo1_E          107 AITEPITR---ESVNII-DPRHN-RTVLHWIA-S------NSSAEKSEDLIVHEAKECIAAG--ADVNAMDCDENTPLML  172 (373)
T ss_dssp             CCCSCCST---TTTTTC-CCSSC-CCHHHHHH-C------TTCCSCCTTHHHHHHHHHHHTC--CCTTCCCTTSCCHHHH
T ss_pred             hHHHHhcc---cccccc-CCcCC-CCHHHHHH-H------CCCHHHHHHHHHHHHHHHHhcC--CCCcCCCCCCCCHHHH
Confidence            44444443   356777 6 688 99999999 9      99988777776        788  9999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcC---CCCccccCCCCCcHHHHHHHcC---c
Q 014730           79 CAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEAT---NGVDIYRGNDGAMVLLFLIAAN---L  152 (419)
Q Consensus        79 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g---~~~~~~~~~~g~t~l~~a~~~~---~  152 (419)
                      |+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|++.|   ++++. .+..|.||||+|+..+   +
T Consensus       173 A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~d~~g~t~L~~A~~~~~~~~  250 (373)
T 2fo1_E          173 AVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVAHNEGRDQ  250 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC-CCTTSCCHHHHHHHSCSTTH
T ss_pred             HHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh-cCCCCCCHHHHHHHhCCcch
Confidence            9999999999999999999 7999999999999999999999999999998   78888 9999999999999998   8


Q ss_pred             HHHHHHHHhhCCCCCc-------CCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCC
Q 014730          153 YDVALDLLKLHPTIGR-------DNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSND  225 (419)
Q Consensus       153 ~~~~~~Ll~~~~~~~~-------~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (419)
                      .+++++|++.|+++..       ..|..|.||||+|+..+.                                       
T Consensus       251 ~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~---------------------------------------  291 (373)
T 2fo1_E          251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN---------------------------------------  291 (373)
T ss_dssp             HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC---------------------------------------
T ss_pred             HHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCC---------------------------------------
Confidence            9999999999988762       257789999999998642                                       


Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhh
Q 014730          226 DQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEG  305 (419)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  305 (419)
                                                                                            .++++.|++.
T Consensus       292 ----------------------------------------------------------------------~~~v~~Ll~~  301 (373)
T 2fo1_E          292 ----------------------------------------------------------------------MPIVKYLVGE  301 (373)
T ss_dssp             ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred             ----------------------------------------------------------------------HHHHHHHHHh
Confidence                                                                                  1333333433


Q ss_pred             h-hhcccc--chhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          306 V-VWTNFQ--KSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       306 ~-~~~~~~--~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      . .  +++  ...+ .||||+|+..|+.++|++|++. |++++.++..|+||||+|+.+++.+++++|++++
T Consensus       302 ~~~--~~n~~d~~g-~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          302 KGS--NKDKQDEDG-KTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             SCC--CTTCCCTTC-CCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             cCC--CccCcCCCC-CCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            2 2  222  2223 8999999999999999999999 9999999999999999999999999999999984

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.1e-35  Score=261.03  Aligned_cols=225  Identities=12%  Similarity=0.072  Sum_probs=197.8

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      |..| .||||.|+ .      .|+.+++++|++.|  .+++..+..|.||||+|+..|+.+++++|+++++++....+..
T Consensus         6 d~~~-~~~l~~A~-~------~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   75 (240)
T 3eu9_A            6 DDYS-TWDIVKAT-Q------YGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL   75 (240)
T ss_dssp             SCGG-GCCHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred             cccc-chHHHHHH-H------cCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence            8889 99999999 9      99999999999999  8999999999999999999999999999999999854455566


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          106 GYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      |.||||+|+..|+.+++++|++.|++++. .+..|.||||.|+..|+.+++++|++.|+++. ..+..|.||||+|+..+
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~  153 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRT  153 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHC
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhC
Confidence            99999999999999999999999999999 99999999999999999999999999999987 88999999999998643


Q ss_pred             CCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHH
Q 014730          186 YAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFH  265 (419)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (419)
                      ....                                                                            
T Consensus       154 ~~~~----------------------------------------------------------------------------  157 (240)
T 3eu9_A          154 HSVD----------------------------------------------------------------------------  157 (240)
T ss_dssp             CSST----------------------------------------------------------------------------
T ss_pred             ChHH----------------------------------------------------------------------------
Confidence            2110                                                                            


Q ss_pred             HHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccch---hhhhHHHHHHHHhChHHHHHHHHHhcCC
Q 014730          266 KLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKS---AQLSGAMLSAAILGIPEVVNEFIMAYDS  342 (419)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~t~L~~A~~~g~~e~v~~Ll~~~~~  342 (419)
                                                      +++.+.+...  +++..   .+ .||||.|+..|+.+++++|++. |+
T Consensus       158 --------------------------------~~~~L~~~~~--~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~-g~  201 (240)
T 3eu9_A          158 --------------------------------PTRLLLTFNV--SVNLGDKYHK-NTALHWAVLAGNTTVISLLLEA-GA  201 (240)
T ss_dssp             --------------------------------THHHHHHTTC--CTTCCCTTTC-CCHHHHHHHHTCHHHHHHHHHH-TC
T ss_pred             --------------------------------HHHHHHhcCC--CcchhhccCC-CcHHHHHHHcCCHHHHHHHHHc-CC
Confidence                                            1111122222  22221   22 7999999999999999999999 99


Q ss_pred             ccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          343 CSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       343 d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      +++..+..|+||||+|+++++.+++++|++.+
T Consensus       202 ~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          202 NVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            99999999999999999999999999999995

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.1e-35  Score=261.57  Aligned_cols=214  Identities=18%  Similarity=0.164  Sum_probs=192.4

Q ss_pred             CCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcC
Q 014730            4 KNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKG   83 (419)
Q Consensus         4 ~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g   83 (419)
                      .|+.+++++|+++ +.+++...+..| .||||+|+ .      .|+.+++++|++.|  .+++..|..|.||||+|+..|
T Consensus         1 gg~~~~i~~Ll~~-g~~~~~~~d~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~   69 (223)
T 2f8y_A            1 GDAPAVISDFIYQ-GASLHNQTDRTG-ETALHLAA-R------YSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSAD   69 (223)
T ss_dssp             ----CCEETTEET-TCCTTCCCTTTC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHHHc-CCCcccccCCCC-CchHHHHH-H------cCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcC
Confidence            3778889999988 666665548899 99999999 9      99999999999999  899999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhC
Q 014730           84 NLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH  163 (419)
Q Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  163 (419)
                      +.+++++|+++++..++.++..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.|
T Consensus        70 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  148 (223)
T 2f8y_A           70 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNG  148 (223)
T ss_dssp             CHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-cCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999854888999999999999999999999999999999999 9999999999999999999999999998


Q ss_pred             CCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccC
Q 014730          164 PTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMH  243 (419)
Q Consensus       164 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (419)
                      +++. .+|..|                                                                     
T Consensus       149 ~~~~-~~~~~g---------------------------------------------------------------------  158 (223)
T 2f8y_A          149 ANKD-MQNNRE---------------------------------------------------------------------  158 (223)
T ss_dssp             CCTT-CCCTTC---------------------------------------------------------------------
T ss_pred             CCCC-CcCCCC---------------------------------------------------------------------
Confidence            7765 222211                                                                     


Q ss_pred             CCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHH
Q 014730          244 PKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLS  323 (419)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~  323 (419)
                                                                                                .||||+
T Consensus       159 --------------------------------------------------------------------------~t~L~~  164 (223)
T 2f8y_A          159 --------------------------------------------------------------------------ETPLFL  164 (223)
T ss_dssp             --------------------------------------------------------------------------CCHHHH
T ss_pred             --------------------------------------------------------------------------cCHHHH
Confidence                                                                                      568888


Q ss_pred             HHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          324 AAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       324 A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      |+..|+.+++++|++. |++++.++..|+||||+|+++++.+++++|++++
T Consensus       165 A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          165 AAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            8888999999999999 9999999999999999999999999999999996

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.8e-35  Score=265.07  Aligned_cols=215  Identities=21%  Similarity=0.228  Sum_probs=195.0

Q ss_pred             CccCCChHHHHHHHH---hCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHH
Q 014730            1 MIEKNDWPGVEDFVT---NHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVI   77 (419)
Q Consensus         1 A~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~   77 (419)
                      |++.|+.++|+.|++   ..+.+++.+ +..| .||||+|+ .      .|+.+++++|++.|  .+++..+..|.||||
T Consensus        16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~   84 (241)
T 1k1a_A           16 AVVQGNLPAVHRLVNLFQQGGRELDIY-NNLR-QTPLHLAV-I------TTLPSVVRLLVTAG--ASPMALDRHGQTAAH   84 (241)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCcc-cccC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCccccCCCCCCHHH
Confidence            678999999999998   368899998 9999 99999999 9      99999999999999  899999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCC----CCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccC-CCCCcHHHHHHHcCc
Q 014730           78 FCAAKGNLKALKVLLKYNP----DLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRG-NDGAMVLLFLIAANL  152 (419)
Q Consensus        78 ~A~~~g~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~~g~t~l~~a~~~~~  152 (419)
                      +|+..|+.+++++|+++++    + ++.++..|.||||+|+..|+.+++++|++.|++++. .+ ..|.||||+|+..|+
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAPGTLD-LEARNYDGLTALHVAVNTECQETVQLLLERGADIDA-VDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCcccc-ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccccCCCcHHHHHHHcCC
Confidence            9999999999999999987    5 688899999999999999999999999999999988 77 789999999999999


Q ss_pred             HHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCC
Q 014730          153 YDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGD  232 (419)
Q Consensus       153 ~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (419)
                      .+++++|++.|+++. .+|..|                                                          
T Consensus       163 ~~~v~~Ll~~g~~~~-~~~~~g----------------------------------------------------------  183 (241)
T 1k1a_A          163 LSMVQLLLQHGANVN-AQMYSG----------------------------------------------------------  183 (241)
T ss_dssp             HHHHHHHHHTTCCTT-CBCTTS----------------------------------------------------------
T ss_pred             HHHHHHHHHcCCCCC-CcCCCC----------------------------------------------------------
Confidence            999999999988765 222111                                                          


Q ss_pred             CCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhcccc
Q 014730          233 TENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQ  312 (419)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  312 (419)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (241)
T 1k1a_A          184 --------------------------------------------------------------------------------  183 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          313 KSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       313 ~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                           .||||+|+..|+.+++++|++. |++++.++..|+||||+|+.+++.++++.|.+.
T Consensus       184 -----~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          184 -----SSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             -----CBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             -----CCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence                 5788888888999999999999 999999999999999999999999999999887

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.9e-35  Score=270.84  Aligned_cols=236  Identities=13%  Similarity=0.061  Sum_probs=196.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      ++...+.+.+..++.+.  +++.+ |..| .||||+|+ .      .|+.+++++|++.|  ++++..  +|.||||+|+
T Consensus         6 ~i~~~~~~~v~~lL~~~--~~~~~-d~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~   70 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK--DTFKA-DVHG-HSASYYAI-A------DNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAA   70 (285)
T ss_dssp             TGGGCCHHHHHHHHHST--TTTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHTT--GGGSCC--TTCCHHHHHT
T ss_pred             HHHhcCHHHHHHHHHhC--CCCcc-CCCC-CCHHHHHH-H------cCCHHHHHHHHhCC--CCCCCC--CCCCHHHHHH
Confidence            35677888888888774  57888 9999 99999999 9      99999999999999  888877  4899999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCC-CcHHHHHHHcCcHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDG-AMVLLFLIAANLYDVALDL  159 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~L  159 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..| .||||+|+..|+.+++++|
T Consensus        71 ~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~~t~L~~A~~~~~~~~v~~L  148 (285)
T 3kea_A           71 TLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFYHAVMLNDVSIVSYF  148 (285)
T ss_dssp             TSSSCHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG-CSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCc-cCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999 799999999999999999999999999999999999 89999 8999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccc
Q 014730          160 LKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVT  239 (419)
Q Consensus       160 l~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (419)
                      ++.|++..  ....|.||||+|+..+.                                                     
T Consensus       149 l~~g~~~~--~~~~g~t~L~~A~~~g~-----------------------------------------------------  173 (285)
T 3kea_A          149 LSEIPSTF--DLAILLSCIHITIKNGH-----------------------------------------------------  173 (285)
T ss_dssp             HTTSCTTC--CCSTHHHHHHHHHHTTC-----------------------------------------------------
T ss_pred             HhCCCccc--cccCCccHHHHHHHcCh-----------------------------------------------------
Confidence            99998753  12378889988887632                                                     


Q ss_pred             cccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhh-h
Q 014730          240 SKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQL-S  318 (419)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~  318 (419)
                                                                              .++++.|++.+.  +++..+.. .
T Consensus       174 --------------------------------------------------------~~~v~~Ll~~ga--d~n~~~~~g~  195 (285)
T 3kea_A          174 --------------------------------------------------------VDMMILLLDYMT--STNTNNSLLF  195 (285)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHH--HTCTTCCCBC
T ss_pred             --------------------------------------------------------HHHHHHHHHcCC--CCCcccCCCC
Confidence                                                                    122333333333  33322211 5


Q ss_pred             HH-HHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          319 GA-MLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       319 t~-L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      || ||+|+..|+.++|++|++. |++++..+       +.|+..++.+++++|+++|
T Consensus       196 t~~L~~A~~~~~~~~v~~Ll~~-gad~~~~~-------~~a~~~~~~~iv~~Ll~~g  244 (285)
T 3kea_A          196 IPDIKLAIDNKDIEMLQALFKY-DINIYSAN-------LENVLLDDAEIAKMIIEKH  244 (285)
T ss_dssp             CTTHHHHHHHTCHHHHHHHTTS-CBCSTTTT-------GGGGTTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHc-CCCCCCCC-------hhhhhcCCHHHHHHHHHcC
Confidence            65 8999999999999999988 88888877       3567788889999998885

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.7e-36  Score=272.01  Aligned_cols=213  Identities=17%  Similarity=0.194  Sum_probs=163.8

Q ss_pred             CccCCChHHHHHHHHhCCcc-------cccccCCCCCccHHHHHHHhhcccCCCchH-HHHHHHHhhCCCccccccCCCC
Q 014730            1 MIEKNDWPGVEDFVTNHPDA-------LTAKIVEPGSKTIFHTIAELLVDDDSDEAT-CLLDKLATKVDPQTLARQDNHG   72 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~-------~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~-~~v~~Ll~~~~~~~~~~~~~~g   72 (419)
                      ||+.|+.++|+.|++....+       ++.. +..| .||||.|+ .      .++. .++++|++.|  +++|.+|..|
T Consensus        18 A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~-~t~L~~a~-~------~~~~~~~v~~Ll~~G--advn~~d~~G   86 (269)
T 4b93_B           18 AVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEF-CHPLCQCP-K------CAPAQKRLAKVPASG--LGVNVTSQDG   86 (269)
T ss_dssp             HHHTTCHHHHHHHHTCC-------------------------------------------------CC--CCTTCCCTTS
T ss_pred             HHHcCCHHHHHHHHHCCCccccccccccccc-CccC-CCHHHHHH-H------hCCHHHHHHHHHHCC--CCCCCcCCCC
Confidence            68899999999999874332       4555 7788 99999999 7      6665 5899999999  9999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCc
Q 014730           73 HTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANL  152 (419)
Q Consensus        73 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~  152 (419)
                      .||||+|+..|+.+++++|++.+++ ++.++..|.||+|.|+..++.+++++|++.|++++. .+..|.||||+|+..|+
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~-~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK-KDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCC
Confidence            9999999999999999999999999 799999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCC
Q 014730          153 YDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGD  232 (419)
Q Consensus       153 ~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (419)
                      .+++++|++.|+++. .++..|                                                          
T Consensus       165 ~~~v~~Ll~~gadvn-~~~~~g----------------------------------------------------------  185 (269)
T 4b93_B          165 HELVALLLQHGASIN-ASNNKG----------------------------------------------------------  185 (269)
T ss_dssp             GGGHHHHHHTTCCTT-CBCTTS----------------------------------------------------------
T ss_pred             HHHHHHHHHCCCCCC-ccccCC----------------------------------------------------------
Confidence            999999999998765 222221                                                          


Q ss_pred             CCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhcccc
Q 014730          233 TENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQ  312 (419)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  312 (419)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (269)
T 4b93_B          186 --------------------------------------------------------------------------------  185 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          313 KSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       313 ~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                           .||||+|+..|+.++|++||+. |+|++.+|..|+||||+|+++++  ++++|...
T Consensus       186 -----~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~~~--i~~lL~~l  238 (269)
T 4b93_B          186 -----NTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQNSK--IMELLQVV  238 (269)
T ss_dssp             -----CBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCTTCH--HHHHTTC-
T ss_pred             -----CcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHhCCc--HHHHHHHH
Confidence                 5688888888999999999999 99999999999999999998775  55555444

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.6e-34  Score=258.34  Aligned_cols=215  Identities=20%  Similarity=0.180  Sum_probs=195.1

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.+++++|+++ +.+++.. +..| .||||+|+ .      .|+.+++++|++.|  .+++..+..|.||||+|+
T Consensus        18 A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~   85 (237)
T 3b7b_A           18 AAEAGHVDICHMLVQA-GANIDTC-SEDQ-RTPLMEAA-E------NNHLEAVKYLIKAG--ALVDPKDAEGSTCLHLAA   85 (237)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCC-CTTC-CCHHHHHH-H------TTCHHHHHHHHTTT--CCCCCCCTTSCCHHHHHH
T ss_pred             HHHcCcHHHHHHHHHc-CCCcCcc-CCCC-CCHHHHHH-H------hCCHHHHHHHHhCC--CCCCCCCCCCCcHHHHHH
Confidence            6788999999999988 8889888 9999 99999999 9      99999999999999  899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..|+.+++++|+++++..++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||.|+..|+.+++++|+
T Consensus        86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll  164 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDIAEILL  164 (237)
T ss_dssp             HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            999999999999999444888999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcccccc
Q 014730          161 KLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTS  240 (419)
Q Consensus       161 ~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (419)
                      +.|+++. .+|..|                                                                  
T Consensus       165 ~~g~~~~-~~~~~g------------------------------------------------------------------  177 (237)
T 3b7b_A          165 AAKCDLH-AVNIHG------------------------------------------------------------------  177 (237)
T ss_dssp             TTTCCTT-CCCTTC------------------------------------------------------------------
T ss_pred             HcCCCCC-CcCCCC------------------------------------------------------------------
Confidence            9988765 222222                                                                  


Q ss_pred             ccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHH
Q 014730          241 KMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGA  320 (419)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~  320 (419)
                                                                                                   .||
T Consensus       178 -----------------------------------------------------------------------------~t~  180 (237)
T 3b7b_A          178 -----------------------------------------------------------------------------DSP  180 (237)
T ss_dssp             -----------------------------------------------------------------------------CCH
T ss_pred             -----------------------------------------------------------------------------CCH
Confidence                                                                                         568


Q ss_pred             HHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          321 MLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       321 L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                      ||+|+..|+.+++++|++. |++++.++..|+||||+|+.+++...+..+++.
T Consensus       181 L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~  232 (237)
T 3b7b_A          181 LHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMSKA  232 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999 999999999999999999999998665555543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.5e-34  Score=254.50  Aligned_cols=214  Identities=18%  Similarity=0.172  Sum_probs=189.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccc-cCCCCChHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLAR-QDNHGHTAVIFC   79 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~-~~~~g~t~L~~A   79 (419)
                      |++.|+.+.|+.|+++.+...+.+ +..| .||||+|+ .      .|+.+++++|++.|.+.+++. .+..|.||||+|
T Consensus         9 A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            9 ACMENEFFKVQELLHSKPSLLLQK-DQDG-RIPLHWSV-S------FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGTTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHhCCHHHHHHHHhcCccccccC-CCCC-CCHHHHHH-H------cCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            678999999999999966666556 9999 99999999 9      999999999999994445555 788999999999


Q ss_pred             HHcCCHHHHHHHHhcC--CCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHH
Q 014730           80 AAKGNLKALKVLLKYN--PDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVAL  157 (419)
Q Consensus        80 ~~~g~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~  157 (419)
                      +..|+.+++++|+++|  ++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.++++
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999998  77 788899999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHhhC-CCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcc
Q 014730          158 DLLKLH-PTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENF  236 (419)
Q Consensus       158 ~Ll~~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (419)
                      +|++.| +++. .+|..|                                                              
T Consensus       158 ~Ll~~g~~~~~-~~d~~g--------------------------------------------------------------  174 (228)
T 2dzn_A          158 LLCGLGKSAVN-WQDKQG--------------------------------------------------------------  174 (228)
T ss_dssp             HHHTTTCCCSC-CCCTTS--------------------------------------------------------------
T ss_pred             HHHhcCccccc-CcCCCC--------------------------------------------------------------
Confidence            999998 5443 222221                                                              


Q ss_pred             ccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhh
Q 014730          237 TVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQ  316 (419)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  316 (419)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (228)
T 2dzn_A          175 --------------------------------------------------------------------------------  174 (228)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHhChHHHHHHHH-HhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          317 LSGAMLSAAILGIPEVVNEFI-MAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       317 ~~t~L~~A~~~g~~e~v~~Ll-~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                       .||||+|+..|+.+++++|+ +. |++++..+..|+||||+|+..   +++++|+++
T Consensus       175 -~t~L~~A~~~~~~~~v~~Ll~~~-ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          175 -WTPLFHALAEGHGDAAVLLVEKY-GAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHH-CCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             -CCHHHHHHHcCCHHHHHHHHHhc-CCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence             56888888889999999999 77 999999999999999999876   577777765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6.9e-35  Score=277.88  Aligned_cols=244  Identities=9%  Similarity=0.015  Sum_probs=210.3

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |++.|+.++|++|++. +.+++.+ +..| .||||+|| .      .|+.++|++|++.|  .++  .+..|.||||+|+
T Consensus        27 Aa~~g~~~~v~~Ll~~-g~~~~~~-d~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~--~~~~g~t~L~~A~   92 (364)
T 3ljn_A           27 AARKGQTDEVRRLIET-GVSPTIQ-NRFG-CTALHLAC-K------FGCVDTAKYLASVG--EVH--SLWHGQKPIHLAV   92 (364)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCC-CTTC-CCHHHHHH-H------HCCHHHHHHHHHHC--CCC--CCBTTBCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHc-CCCcccc-CCCC-CcHHHHHH-H------cCCHHHHHHHHHCC--CCc--cccCCCCHHHHHH
Confidence            6789999999999988 8899999 9999 99999999 9      99999999999999  533  3468999999999


Q ss_pred             HcCCHHHHHHHHhc----CCCCCcc-----------------CCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCccccC
Q 014730           81 AKGNLKALKVLLKY----NPDLTNI-----------------RDSDGYLPVHNAAYYG--HKDTFQYLLEATNGVDIYRG  137 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~----~~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~~~~  137 (419)
                      ..|+.+++++|+++    +.+ ++.                 ++..|.||||+|+..|  +.+++++|++.|++++. .+
T Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~-~d  170 (364)
T 3ljn_A           93 MANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-KD  170 (364)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC-CC
T ss_pred             HcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc-cC
Confidence            99999999999999    776 555                 7888999999999999  99999999999999999 99


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhhCCC-----CCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCC
Q 014730          138 NDGAMVLLFLIAANLYDVALDLLKLHPT-----IGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIP  212 (419)
Q Consensus       138 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (419)
                      ..|.||||+|+..|+.+++++|++.|++     +. ..|..|.||||+|+..+.                          
T Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~~A~~~g~--------------------------  223 (364)
T 3ljn_A          171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWAILINW--------------------------  223 (364)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTHHHHTTTC--------------------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHHHHHHHcCC--------------------------
Confidence            9999999999999999999999999988     66 789999999999998642                          


Q ss_pred             cccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhh
Q 014730          213 LEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTH  292 (419)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (419)
                                                                                                      
T Consensus       224 --------------------------------------------------------------------------------  223 (364)
T 3ljn_A          224 --------------------------------------------------------------------------------  223 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhHHHHHHHHHhhhhhccccchhhh-hHHHHHHHHhChHHHHHHHHHhcCCcccc------------ccCCCCchHHHHH
Q 014730          293 MRTVEIVRIICEGVVWTNFQKSAQL-SGAMLSAAILGIPEVVNEFIMAYDSCSNW------------SNQDGHTIFDHAV  359 (419)
Q Consensus       293 ~~~~~~l~~l~~~~~~~~~~~~~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~------------~~~~g~t~Lh~Av  359 (419)
                         .++++.|++.+.  +++..+.. .||||+|+..|+.++|++|++. +++++.            .+..|+|||+.|+
T Consensus       224 ---~~~v~~Ll~~ga--d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa  297 (364)
T 3ljn_A          224 ---EDVAMRFVEMGI--DVNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAA  297 (364)
T ss_dssp             ---HHHHHHHHTTTC--CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSS
T ss_pred             ---HHHHHHHHHcCC--CCCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhh
Confidence               134444555554  44332222 8999999999999999999999 877533            3467899999999


Q ss_pred             hhchHHHHHHHhhc
Q 014730          360 LHRREKVFNLIQGV  373 (419)
Q Consensus       360 ~~~~~~iv~~L~~~  373 (419)
                      ..++.+.+..|+..
T Consensus       298 ~~~~~~~v~~ll~~  311 (364)
T 3ljn_A          298 ADPSKQEVLQLLQE  311 (364)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHH
Confidence            99977776666666

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=264.09  Aligned_cols=210  Identities=12%  Similarity=0.116  Sum_probs=193.1

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.++|+.|++. +.+++.+ +..| .||||+|+ .      .|+.+++++|++.|  ++++.+|..|.||||+|+
T Consensus        66 Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--a~~~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           66 AAIHGHQLSLRNLISQ-GWAVNII-TADH-VSPLHEAC-L------GGHLSCVKILLKHG--AQVNGVTADWHTPLFNAC  133 (285)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCSCEE-CTTC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCCc-CCCC-CCHHHHHH-H------CCcHHHHHHHHHCC--CCCCCCCCCCCCHHHHHH
Confidence            6789999999999987 7889999 9999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..|+.+++++|+++|++ ++. +..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+
T Consensus       134 ~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll  210 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDH-KISHLGTPLYLACENQQRACVKKLL  210 (285)
T ss_dssp             HHTCHHHHHHHHHTTCC-SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTC-CBTTTBCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            99999999999999998 554 44599999999999999999999999999999 9999999999999999999999999


Q ss_pred             hhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcccccc
Q 014730          161 KLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTS  240 (419)
Q Consensus       161 ~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (419)
                      +.|+++.  .+..|                                                                  
T Consensus       211 ~~ga~~~--~~~~g------------------------------------------------------------------  222 (285)
T 3d9h_A          211 ESGADVN--QGKGQ------------------------------------------------------------------  222 (285)
T ss_dssp             HTTCCTT--CCBTT------------------------------------------------------------------
T ss_pred             HCCCCCC--CCCCC------------------------------------------------------------------
Confidence            9987654  11111                                                                  


Q ss_pred             ccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHH
Q 014730          241 KMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGA  320 (419)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~  320 (419)
                                                                                                   .||
T Consensus       223 -----------------------------------------------------------------------------~t~  225 (285)
T 3d9h_A          223 -----------------------------------------------------------------------------DSP  225 (285)
T ss_dssp             -----------------------------------------------------------------------------BCH
T ss_pred             -----------------------------------------------------------------------------CCH
Confidence                                                                                         578


Q ss_pred             HHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          321 MLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       321 L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                      ||+|+..|+.++|++|++. |++++.+|..|+||||+|+  ++.+++++|+++
T Consensus       226 L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          226 LHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence            8888889999999999999 9999999999999999999  456899999998

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.3e-33  Score=257.29  Aligned_cols=237  Identities=11%  Similarity=0.044  Sum_probs=149.5

Q ss_pred             CccCCChHHHHHHHHhCCcc---cccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDA---LTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVI   77 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~---~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~   77 (419)
                      |++.|+.++|+.|++. +.+   ++.+ +..| .||||+|| .      .|+.+++++|++.|  ++++..|..|.||||
T Consensus        16 A~~~g~~~~v~~Ll~~-g~~~~~~~~~-~~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~   83 (282)
T 1oy3_D           16 AVIHQHEPFLDFLLGF-SAGHEYLDLQ-NDLG-QTALHLAA-I------LGEASTVEKLYAAG--AGVLVAERGGHTALH   83 (282)
T ss_dssp             HHHTTCHHHHHHHHHH-HTTSGGGGCC-CTTS-CCHHHHHH-H------HTCHHHHHHHHHTT--CCSSCCCTTSCCHHH
T ss_pred             HHHcCCHHHHHHHHhc-CCCccccccc-CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCCCCCCCCCCCHHH
Confidence            6789999999999987 444   7888 9999 99999999 9      99999999999999  999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCC------------ccCCCCCchHHHHHHHcCC-HHHHHHHHhcCCCCccccCCCCCcHH
Q 014730           78 FCAAKGNLKALKVLLKYNPDLT------------NIRDSDGYLPVHNAAYYGH-KDTFQYLLEATNGVDIYRGNDGAMVL  144 (419)
Q Consensus        78 ~A~~~g~~~~~~~Ll~~~~~~~------------~~~~~~g~t~L~~A~~~g~-~~~~~~Ll~~g~~~~~~~~~~g~t~l  144 (419)
                      +|+..|+.+++++|+++++...            ......+.++++.++..+. ......+...+.+++. .+..|.|||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~L  162 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGHTPL  162 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC-CCTTSCCHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCC-cCCCCcCHH
Confidence            9999999999999999986521            0111123444554444332 2333444445555555 666666666


Q ss_pred             HHHHHcCcHHHHHHHHhhCCCCCcCCC-CCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCccccccccccc
Q 014730          145 LFLIAANLYDVALDLLKLHPTIGRDNI-DSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQS  223 (419)
Q Consensus       145 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (419)
                      |+|+..|+.+++++|++.|+++. ..+ ..|.||||+|+..+.                                     
T Consensus       163 ~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~~~~-------------------------------------  204 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVEAQA-------------------------------------  204 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTC-------------------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcCHHHHHHHcCC-------------------------------------
Confidence            66666666666666666666665 343 336666666665421                                     


Q ss_pred             CCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHH
Q 014730          224 NDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIIC  303 (419)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  303 (419)
                                                                                              .++++.|+
T Consensus       205 ------------------------------------------------------------------------~~~v~~Ll  212 (282)
T 1oy3_D          205 ------------------------------------------------------------------------ASVLELLL  212 (282)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    12223333


Q ss_pred             hhhhhccccchhhh-hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhch
Q 014730          304 EGVVWTNFQKSAQL-SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRR  363 (419)
Q Consensus       304 ~~~~~~~~~~~~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~  363 (419)
                      +.+.  +++..+.. .||||+|+..|+.++|++|++. |++++.++..|+|||++|.....
T Consensus       213 ~~ga--d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          213 KAGA--DPTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HTTC--CTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC---------------
T ss_pred             HcCC--CCcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCCcccccccccCCccc
Confidence            3332  22222111 7899999999999999999999 99999999999999999987653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.3e-34  Score=259.01  Aligned_cols=218  Identities=15%  Similarity=0.167  Sum_probs=186.6

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCC--ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDP--QTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRD  103 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~--~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~  103 (419)
                      |.+| .||||+|+ .      .|+.+++++|++.+..  .+++..|..|.||||+|+..|+.+++++|+++|++ ++.++
T Consensus         5 d~~g-~t~L~~A~-~------~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~   75 (236)
T 1ikn_D            5 TEDG-DSFLHLAI-I------HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRD   75 (236)
T ss_dssp             --CC-CCTTHHHH-H------TTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCC
T ss_pred             CCCC-CchhHHHH-H------cCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcC
Confidence            8899 99999999 9      9999999999998721  26899999999999999999999999999999999 79999


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCC------ccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCC-CCCc
Q 014730          104 SDGYLPVHNAAYYGHKDTFQYLLEATNGV------DIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNID-SRRI  176 (419)
Q Consensus       104 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~~  176 (419)
                      ..|.||||+|+..|+.+++++|++.|+++      +. .+..|.||||+|+..|+.+++++|++.|+++. .++. .|  
T Consensus        76 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g--  151 (236)
T 1ikn_D           76 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA-TNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNG--  151 (236)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC-CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTC--
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCC--
Confidence            99999999999999999999999999763      34 67889999999999999999999999998765 2211 11  


Q ss_pred             HHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhH
Q 014730          177 VLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQI  256 (419)
Q Consensus       177 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (419)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (236)
T 1ikn_D          152 --------------------------------------------------------------------------------  151 (236)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHH
Q 014730          257 TAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEF  336 (419)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~L  336 (419)
                                                                                   .||||+|+..|+.++|++|
T Consensus       152 -------------------------------------------------------------~tpL~~A~~~~~~~~v~~L  170 (236)
T 1ikn_D          152 -------------------------------------------------------------RTALHLAVDLQNPDLVSLL  170 (236)
T ss_dssp             -------------------------------------------------------------CCHHHHHHHTTCHHHHHHH
T ss_pred             -------------------------------------------------------------CCHHHHHHHcCCHHHHHHH
Confidence                                                                         5788888888999999999


Q ss_pred             HHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccC
Q 014730          337 IMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVP  399 (419)
Q Consensus       337 l~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~  399 (419)
                      ++. |++++..+..|+||||+|+.+++.+++++|++++.. ......+..|.||.+.+.....
T Consensus       171 l~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~~  231 (236)
T 1ikn_D          171 LKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE-NLQMLPESEDEESYDTESEFTE  231 (236)
T ss_dssp             HTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG-GGSSCCCCCTTTCCCCC-----
T ss_pred             HHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchh-hhhcCCccchHHHHhhhccccc
Confidence            999 999999999999999999999999999999999622 2345789999999999987654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.5e-33  Score=249.68  Aligned_cols=202  Identities=20%  Similarity=0.198  Sum_probs=179.9

Q ss_pred             chHHHHHHHHhhCCCcccccc-CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHH
Q 014730           48 EATCLLDKLATKVDPQTLARQ-DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL  126 (419)
Q Consensus        48 g~~~~v~~Ll~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll  126 (419)
                      |+.+++++|++.|  .+++.. |..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcC--CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6788899999999  777654 88999999999999999999999999998 7899999999999999999999999999


Q ss_pred             hcCC-CCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhh
Q 014730          127 EATN-GVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCW  205 (419)
Q Consensus       127 ~~g~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  205 (419)
                      +.++ +++. .+..|.||||+|+..++.+++++|++.|+++. ..+..|                               
T Consensus        79 ~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g-------------------------------  125 (223)
T 2f8y_A           79 RNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLG-------------------------------  125 (223)
T ss_dssp             HBTTSCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTS-------------------------------
T ss_pred             HcCCCCccc-CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCC-------------------------------
Confidence            9987 7777 88999999999999999999999999887654 221111                               


Q ss_pred             cccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHH
Q 014730          206 CQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVI  285 (419)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (419)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (223)
T 2f8y_A          126 --------------------------------------------------------------------------------  125 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHH
Q 014730          286 HDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREK  365 (419)
Q Consensus       286 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~  365 (419)
                                                      .||||+|+..|+.+++++|++. |++++..+..|+||||+|+.+++.+
T Consensus       126 --------------------------------~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~  172 (223)
T 2f8y_A          126 --------------------------------KSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYE  172 (223)
T ss_dssp             --------------------------------CBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             --------------------------------CcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHHcCCHH
Confidence                                            5788888888999999999999 9999999999999999999999999


Q ss_pred             HHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          366 VFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       366 iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      ++++|+++   +.+++.+|..|.||||+|++.|+.+
T Consensus       173 ~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~  205 (223)
T 2f8y_A          173 TAKVLLDH---FANRDITDHMDRLPRDIAQERMHHD  205 (223)
T ss_dssp             HHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHc---CCCCccccccCCCHHHHHHHhcchH
Confidence            99999999   5677899999999999999998755

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.9e-32  Score=244.07  Aligned_cols=145  Identities=21%  Similarity=0.173  Sum_probs=130.1

Q ss_pred             CCCccHHHHHHHhhcccCCCchHHHHHHHHhh-CCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCC----ccC
Q 014730           28 PGSKTIFHTIAELLVDDDSDEATCLLDKLATK-VDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLT----NIR  102 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~----~~~  102 (419)
                      .| .||||+|+ .      .|+.+++++|++. |  .+++.+|..|.||||+|+..|+.+++++|+++++++.    +.+
T Consensus         2 ~g-~t~L~~A~-~------~g~~~~v~~Ll~~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~   71 (232)
T 2rfa_A            2 IW-ESPLLLAA-K------ENDVQALSKLLKFEG--CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSE   71 (232)
T ss_dssp             CT-TCHHHHHH-H------TTCHHHHHHHHTTTC--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCST
T ss_pred             CC-CCHHHHHH-H------cCCHHHHHHHHHhcC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccccccc
Confidence            36 99999999 9      9999999999998 7  8999999999999999999999999999999998731    566


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCC-------------CCCcHHHHHHHcCcHHHHHHHHhhCCCCCcC
Q 014730          103 DSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGN-------------DGAMVLLFLIAANLYDVALDLLKLHPTIGRD  169 (419)
Q Consensus       103 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  169 (419)
                      +..|.||||+|+..|+.+++++|+++|++++. .+.             .|.||||+|+..|+.+++++|++.|+++. .
T Consensus        72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~  149 (232)
T 2rfa_A           72 LYEGQTALHIAVINQNVNLVRALLARGASVSA-RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-A  149 (232)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCc-ccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence            77899999999999999999999999999988 554             79999999999999999999999999877 6


Q ss_pred             CCCCCCcHHHHHHhC
Q 014730          170 NIDSRRIVLNTLSQK  184 (419)
Q Consensus       170 ~~~~g~~~l~~a~~~  184 (419)
                      +|..|.||||+|+..
T Consensus       150 ~d~~g~t~L~~A~~~  164 (232)
T 2rfa_A          150 QDSLGNTVLHILILQ  164 (232)
T ss_dssp             CCTTSCCHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHc
Confidence            666666666666654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=9e-34  Score=266.04  Aligned_cols=248  Identities=16%  Similarity=0.084  Sum_probs=185.1

Q ss_pred             ccCCChHHHHHHHHhCCccccccc----------------CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccc
Q 014730            2 IEKNDWPGVEDFVTNHPDALTAKI----------------VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTL   65 (419)
Q Consensus         2 ~~~g~~~~v~~ll~~~~~~~~~~~----------------~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~   65 (419)
                      +..|+.++|+.|+++ +.+.+...                .... .+.+|+|+ .      .+..++++.|++.|  .++
T Consensus        55 ~~~g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~a~-~------~~~~~~~~~l~~~g--~dv  123 (327)
T 1sw6_A           55 NDNEQKMKLEAFLQR-LLFPEIQEMPTSLNNDSSNRNSEGGSSN-QQQQHVSF-D------SLLQEVNDAFPNTQ--LNL  123 (327)
T ss_dssp             CCHHHHHHHHHHHHH-HHC--------------------------------CH-H------HHHHHHHHHCTTSC--CCS
T ss_pred             ccCchhHHHHHHHHh-ccCCccccchHhhhcccccccccccCCc-cchhHHHH-H------hhHHHHHHHHHhcC--CCc
Confidence            345889999999988 55543310                1111 23458888 8      88899999999999  999


Q ss_pred             cc-cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCC---HHHHHHHHhcC-CCCccccCCCC
Q 014730           66 AR-QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGH---KDTFQYLLEAT-NGVDIYRGNDG  140 (419)
Q Consensus        66 ~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~~~~Ll~~g-~~~~~~~~~~g  140 (419)
                      |. +|..|.||||+||..|+.+++++|+++|++ ++.++..|.||||+|+..|+   .++++.|++.+ ++++. .+..|
T Consensus       124 n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~-~d~~g  201 (327)
T 1sw6_A          124 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL-EDSMN  201 (327)
T ss_dssp             CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE-ECTTC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC-CCCCC
Confidence            99 899999999999999999999999999999 79999999999999999998   68888888886 67888 99999


Q ss_pred             CcHHHHHHH----cCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccc
Q 014730          141 AMVLLFLIA----ANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKE  216 (419)
Q Consensus       141 ~t~l~~a~~----~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (419)
                      .||||+|+.    .|+.+++++|++.+....             ..........+ .                       
T Consensus       202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~-------------~~~~~~~i~~~-~-----------------------  244 (327)
T 1sw6_A          202 RTILHHIIITSGMTGCSAAAKYYLDILMGWI-------------VKKQNRPIQSG-T-----------------------  244 (327)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH-------------HHGGGCCEEEC-------------------------
T ss_pred             CCHHHHHHHHccccccHHHHHHHHHHHHHHH-------------hcccchHHHhh-h-----------------------
Confidence            999999999    899999999998764221             00000000000 0                       


Q ss_pred             cccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHH
Q 014730          217 RVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTV  296 (419)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (419)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (327)
T 1sw6_A          245 --------------------------------------------------------------------------------  244 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccc
Q 014730          297 EIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFT  376 (419)
Q Consensus       297 ~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~  376 (419)
                            .+...-.+.....+ .||||.|+.      +++|++. +  ++.++..|+||||+|+++++.+++++|+++   
T Consensus       245 ------~~~g~~~~~~~~~g-~t~L~~a~~------~~~Ll~~-~--~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---  305 (327)
T 1sw6_A          245 ------NEKESKPNDKNGER-KDSILENLD------LKWIIAN-M--LNAQDSNGDTCLNIAARLGNISIVDALLDY---  305 (327)
T ss_dssp             ----------------------CHHHHHCS------HHHHHHH-T--TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---
T ss_pred             ------hcccCCcccccccC-CChhHHHHH------HHHHHHh-C--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---
Confidence                  00000001111112 789999996      8999987 4  777889999999999999999999999999   


Q ss_pred             cceeeeccCCCCccchhccccc
Q 014730          377 TFLFSSRDKSGNNILHLAGRLV  398 (419)
Q Consensus       377 ~~~~~~~D~~G~t~Lh~A~~~~  398 (419)
                      +.+++.+|.+|+||||+||+.|
T Consensus       306 Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          306 GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCcccCCCCCCHHHHHHhcC
Confidence            6788999999999999999875

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.7e-32  Score=231.57  Aligned_cols=153  Identities=25%  Similarity=0.331  Sum_probs=144.7

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      ||+.|+.++|+.|+++ |.++|.+ |..| .||||+|+ .      .++.+++++|++.|  ++++.+|..|.||||+|+
T Consensus        11 Aa~~G~~~~v~~Ll~~-Gadvn~~-d~~g-~t~l~~a~-~------~~~~~~~~~ll~~g--ad~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A           11 AAENGNKDRVKDLIEN-GADVNAS-DSDG-RTPLHHAA-E------NGHKEVVKLLISKG--ADVNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCCc-CCCC-CCHHHHHH-H------cCCHHHHHHHHhcc--cchhhhccCCCCHHHHHH
Confidence            6889999999999988 8999999 9999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++. ++..|.|||++|+..|+.+++++|+
T Consensus        79 ~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT-SDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999 899999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hhCCCCC
Q 014730          161 KLHPTIG  167 (419)
Q Consensus       161 ~~~~~~~  167 (419)
                      ++|+++.
T Consensus       157 ~~GA~ie  163 (169)
T 4gpm_A          157 KQGGWLE  163 (169)
T ss_dssp             TC-----
T ss_pred             HCCCCcC
Confidence            9999875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.1e-31  Score=233.52  Aligned_cols=198  Identities=16%  Similarity=0.129  Sum_probs=175.5

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      +..+ .||||.|+ .      .|+.+.++.|+..+ +.+++..|..|.||||+|+..|+.+++++|+++|++ ++.++..
T Consensus         2 ~~~~-~~~L~~A~-~------~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~   71 (201)
T 3hra_A            2 KTYE-VGALLEAA-N------QRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSI   71 (201)
T ss_dssp             -CCC-TTHHHHHH-H------TTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             Cccc-ccHHHHHH-H------hccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCC
Confidence            4567 99999999 9      99999999999998 448999999999999999999999999999999999 7999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHH-hcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhC-CCCCcCCCCCCCcHHHHHHh
Q 014730          106 GYLPVHNAAYYGHKDTFQYLL-EATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH-PTIGRDNIDSRRIVLNTLSQ  183 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll-~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~~~l~~a~~  183 (419)
                      |.||||+|+..|+.+++++|+ ..+++++. .+..|.||||.|+..|+.+++++|++.| .++. .+|..|.||||+|+.
T Consensus        72 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~  149 (201)
T 3hra_A           72 SDSPYLYAGAQGRTEILAYMLKHATPDLNK-HNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVG  149 (201)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccc-ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHH
Confidence            999999999999999999999 55668888 8999999999999999999999999998 5555 677777777777765


Q ss_pred             CCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhH
Q 014730          184 KPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLM  263 (419)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (419)
                      .+...                                                                           
T Consensus       150 ~~~~~---------------------------------------------------------------------------  154 (201)
T 3hra_A          150 LREGN---------------------------------------------------------------------------  154 (201)
T ss_dssp             SSCCS---------------------------------------------------------------------------
T ss_pred             hccch---------------------------------------------------------------------------
Confidence            42100                                                                           


Q ss_pred             HHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCc
Q 014730          264 FHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSC  343 (419)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d  343 (419)
                                                                                     .++.+++++|++. |++
T Consensus       155 ---------------------------------------------------------------~~~~~~v~~Ll~~-ga~  170 (201)
T 3hra_A          155 ---------------------------------------------------------------QLYQDIVKLLMEN-GAD  170 (201)
T ss_dssp             ---------------------------------------------------------------HHHHHHHHHHHHT-TCC
T ss_pred             ---------------------------------------------------------------hhHHHHHHHHHHC-CCC
Confidence                                                                           0137899999999 999


Q ss_pred             cccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          344 SNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       344 ~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      ++.++..|+||||+|+.+++.+++++|+++|
T Consensus       171 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          171 QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999999999999999999999874

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.8e-32  Score=242.87  Aligned_cols=219  Identities=15%  Similarity=0.114  Sum_probs=190.3

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHH
Q 014730           65 LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVL  144 (419)
Q Consensus        65 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l  144 (419)
                      ++..|..|.|||+.|+..|+.+++++|++.|.+ ++.++..|.||||+|+..|+.+++++|++.|++++...+..|.|||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            456788999999999999999999999999998 7899999999999999999999999999999988762456699999


Q ss_pred             HHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccC
Q 014730          145 LFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSN  224 (419)
Q Consensus       145 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (419)
                      |.|+..|+.+++++|++.|+++. ..+..|.||||+|+..+..                                     
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~-------------------------------------  122 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHT-------------------------------------  122 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH-------------------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHH-------------------------------------
Confidence            99999999999999999999987 7899999999999986421                                     


Q ss_pred             CCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHh
Q 014730          225 DDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICE  304 (419)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  304 (419)
                                                                                              ++++.+++
T Consensus       123 ------------------------------------------------------------------------~~~~~Ll~  130 (240)
T 3eu9_A          123 ------------------------------------------------------------------------SIVAYLIA  130 (240)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHh
Confidence                                                                                    23333344


Q ss_pred             hhhhccccc--hhhhhHHHHHHHHhCh-HHHHHHHHHhcCCccccccC-CCCchHHHHHhhchHHHHHHHhhccccccee
Q 014730          305 GVVWTNFQK--SAQLSGAMLSAAILGI-PEVVNEFIMAYDSCSNWSNQ-DGHTIFDHAVLHRREKVFNLIQGVNFTTFLF  380 (419)
Q Consensus       305 ~~~~~~~~~--~~~~~t~L~~A~~~g~-~e~v~~Ll~~~~~d~~~~~~-~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~  380 (419)
                      ...  +++.  ..+ .||||.|+..|+ .+++++|++. +++++..+. .|+||||+|+.+++.+++++|+++   +.++
T Consensus       131 ~~~--~~~~~~~~g-~t~l~~a~~~~~~~~~~~~L~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~  203 (240)
T 3eu9_A          131 KGQ--DVDMMDQNG-MTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA---GANV  203 (240)
T ss_dssp             TTC--CTTCCCTTS-CCHHHHHHHHCCSSTTHHHHHHT-TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH---TCCT
T ss_pred             cCC--CccccCCCC-CcHHHHHHHhCChHHHHHHHHhc-CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc---CCCC
Confidence            332  2222  222 799999997776 8999999999 999999995 999999999999999999999999   5778


Q ss_pred             eeccCCCCccchhcccccCCC
Q 014730          381 SSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       381 ~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +.+|..|.||||+|++.|+.+
T Consensus       204 ~~~~~~g~t~l~~A~~~~~~~  224 (240)
T 3eu9_A          204 DAQNIKGESALDLAKQRKNVW  224 (240)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHH
T ss_pred             CCcCCCCCCHHHHHHHcCcHH
Confidence            999999999999999998865

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-32  Score=252.52  Aligned_cols=238  Identities=16%  Similarity=0.146  Sum_probs=181.9

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      ||..|+.+.|+.|+++ +.++|.+ +..| .||||+|| .      .|+.+++++|++.|  ++++..|..|.||||+|+
T Consensus        47 A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           47 ACSSGDTEEVLRLLER-GADINYA-NVDG-LTALHQAC-I------DDNVDMVKFLVENG--ANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             HHHHTCHHHHHHHHHH-CCCTTCB-CTTC-CBHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHc-CCCCccc-CCCC-CCHHHHHH-H------cCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHH
Confidence            6788999999999988 7889998 9999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCccccCCCCCcHHHHHHHcCcHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA-TNGVDIYRGNDGAMVLLFLIAANLYDVALDL  159 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  159 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++++.. |.+++. ....+.+++        ...+..+
T Consensus       115 ~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~--------~~~~~~~  184 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-ARKEEERIM--------LRDARQW  184 (299)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHH-HHHHHHHHH--------HHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchh-hhhhhhhHH--------HHHHHHH
Confidence            99999999999999999 799999999999999999999999988764 444433 222222222        1223334


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccc
Q 014730          160 LKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVT  239 (419)
Q Consensus       160 l~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (419)
                      +..+.......+..|.||||+|+..+.                                                     
T Consensus       185 l~~~~~~~~~~~~~g~t~L~~A~~~g~-----------------------------------------------------  211 (299)
T 1s70_B          185 LNSGHINDVRHAKSGGTALHVAAAKGY-----------------------------------------------------  211 (299)
T ss_dssp             HHHTCCCCCCCTTTCCCHHHHHHHHTC-----------------------------------------------------
T ss_pred             HhccCcchhhhcCCCCCHHHHHHHCCc-----------------------------------------------------
Confidence            444444333455666666666665421                                                     


Q ss_pred             cccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccch--hhh
Q 014730          240 SKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKS--AQL  317 (419)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~  317 (419)
                                                                              .++++.|++.+.  +++..  .+ 
T Consensus       212 --------------------------------------------------------~~~v~~Ll~~g~--d~~~~d~~g-  232 (299)
T 1s70_B          212 --------------------------------------------------------TEVLKLLIQARY--DVNIKDYDG-  232 (299)
T ss_dssp             --------------------------------------------------------HHHHHHHHTTTC--CTTCCCTTC-
T ss_pred             --------------------------------------------------------HHHHHHHHHcCC--CCCCcCCCC-
Confidence                                                                    122223333332  22221  22 


Q ss_pred             hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          318 SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       318 ~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                      .||||+|+..|+.++|++|++. |++++.++..|+||||+|++.....+.+++.+.
T Consensus       233 ~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~~  287 (299)
T 1s70_B          233 WTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ  287 (299)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred             CcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999 999999999999999999876544444444443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=3.1e-32  Score=250.61  Aligned_cols=166  Identities=16%  Similarity=0.102  Sum_probs=154.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.++|+.|++. +.+++.+   +| .||||+|+ .      .|+.+++++|++.|  ++++.+|..|.||||+|+
T Consensus        38 A~~~g~~~~v~~Ll~~-g~~~~~~---~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--a~~~~~d~~g~t~L~~A~  103 (285)
T 3kea_A           38 AIADNNVRLVCTLLNA-GALKNLL---EN-EFPLHQAA-T------LEDTKIVKILLFSG--LDDSQFDDKGNTALYYAV  103 (285)
T ss_dssp             HHHTTCHHHHHHHHHT-TGGGSCC---TT-CCHHHHHT-T------SSSCHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhC-CCCCCCC---CC-CCHHHHHH-H------cCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHH
Confidence            6789999999999988 7888776   48 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCC-chHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDG-YLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDL  159 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  159 (419)
                      ..|+.+++++|+++|++ ++.++..| .||||+|+..|+.+++++|+++|++...  ...|.||||+|+..|+.+++++|
T Consensus       104 ~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~L  180 (285)
T 3kea_A          104 DSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILL  180 (285)
T ss_dssp             HTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHH
Confidence            99999999999999999 79999999 8999999999999999999999987633  23899999999999999999999


Q ss_pred             HhhCCCCCcCCCCCCCcH-HHHHHhC
Q 014730          160 LKLHPTIGRDNIDSRRIV-LNTLSQK  184 (419)
Q Consensus       160 l~~~~~~~~~~~~~g~~~-l~~a~~~  184 (419)
                      +++|+++. .+|..|.|| ||+|+..
T Consensus       181 l~~gad~n-~~~~~g~t~~L~~A~~~  205 (285)
T 3kea_A          181 LDYMTSTN-TNNSLLFIPDIKLAIDN  205 (285)
T ss_dssp             HHHHHHTC-TTCCCBCCTTHHHHHHH
T ss_pred             HHcCCCCC-cccCCCCChHHHHHHHc
Confidence            99999987 899999998 9999875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=8.1e-32  Score=243.78  Aligned_cols=142  Identities=18%  Similarity=0.214  Sum_probs=129.0

Q ss_pred             CCccHHHHHHHhhcccCCCchHH----HHHHHHhhCCCccccc----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCC
Q 014730           29 GSKTIFHTIAELLVDDDSDEATC----LLDKLATKVDPQTLAR----QDNHGHTAVIFCAAK---GNLKALKVLLKYNPD   97 (419)
Q Consensus        29 g~~t~L~~A~~~~~~~~~~g~~~----~v~~Ll~~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~   97 (419)
                      | +||||.|+ .      .|+.+    ++++|++.|  .+++.    .|..|.||||+|+..   |+.+++++|+++|++
T Consensus         2 G-~t~L~~A~-~------~g~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~   71 (256)
T 2etb_A            2 D-RDRLFSVV-S------RGVPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD   71 (256)
T ss_dssp             C-HHHHHHHH-H------HTCGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred             C-ccHHHHHH-H------cCCHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence            6 99999999 9      99997    678888899  88998    899999999999999   999999999999876


Q ss_pred             CCc-----------cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCC-------------CCcHHHHHHHcCcH
Q 014730           98 LTN-----------IRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGND-------------GAMVLLFLIAANLY  153 (419)
Q Consensus        98 ~~~-----------~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~-------------g~t~l~~a~~~~~~  153 (419)
                       ++           .++..|.||||+|+..|+.+++++|+++|++++. .+..             |.||||+|+..|+.
T Consensus        72 -~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~  149 (256)
T 2etb_A           72 -SGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL-RACGRFFQKHQGTCFYFGELPLSLAACTKQW  149 (256)
T ss_dssp             -TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCH
T ss_pred             -ccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-ccccccccccccccccCCCCHHHHHHHcCCH
Confidence             33           2346799999999999999999999999999998 7765             99999999999999


Q ss_pred             HHHHHHHh---hCCCCCcCCCCCCCcHHHHHHh
Q 014730          154 DVALDLLK---LHPTIGRDNIDSRRIVLNTLSQ  183 (419)
Q Consensus       154 ~~~~~Ll~---~~~~~~~~~~~~g~~~l~~a~~  183 (419)
                      +++++|++   .|+++. .+|..|.||||+|+.
T Consensus       150 ~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          150 DVVTYLLENPHQPASLE-ATDSLGNTVLHALVM  181 (256)
T ss_dssp             HHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHH
T ss_pred             HHHHHHHhccccCCCcC-ccCCCCCCHHHHHHH
Confidence            99999999   899887 788899999998887

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3.2e-31  Score=242.25  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=128.8

Q ss_pred             cccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCC--Ccccc----ccCCCCChHHHHHHHc---CCHHHHHHH
Q 014730           21 LTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVD--PQTLA----RQDNHGHTAVIFCAAK---GNLKALKVL   91 (419)
Q Consensus        21 ~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~--~~~~~----~~~~~g~t~L~~A~~~---g~~~~~~~L   91 (419)
                      .+.. +..| .||||.|| .      .|+.++|+.|++.+.  +.+++    ..|..|.||||+|+..   |+.+++++|
T Consensus         6 ~~~~-d~~g-~t~L~~A~-~------~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L   76 (273)
T 2pnn_A            6 EKPP-RLYD-RRSIFDAV-A------QSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL   76 (273)
T ss_dssp             ------CCC-HHHHHHHH-H------TTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred             CCCC-Cccc-chHHHHHH-H------cCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence            3344 8889 99999999 9      999999998887530  14444    3578999999999987   999999999


Q ss_pred             HhcCCCC----------CccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCC--------------CCCcHHHHH
Q 014730           92 LKYNPDL----------TNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGN--------------DGAMVLLFL  147 (419)
Q Consensus        92 l~~~~~~----------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~--------------~g~t~l~~a  147 (419)
                      +++|++.          ....+..|.||||+|+..|+.+++++|+++|++++. .+.              .|.||||+|
T Consensus        77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A  155 (273)
T 2pnn_A           77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDFFKKTKGRPGFYFGELPLSLA  155 (273)
T ss_dssp             HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGGGSSCSSSCCCCSCBSHHHHH
T ss_pred             HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cccccccccccccccccCCCCHHHHH
Confidence            9997541          122567899999999999999999999999999998 765              799999999


Q ss_pred             HHcCcHHHHHHHHh---hCCCCCcCCCCCCCcHHHHHHhC
Q 014730          148 IAANLYDVALDLLK---LHPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       148 ~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                      +..|+.+++++|++   .|+++. .+|..|.||||+|+..
T Consensus       156 ~~~g~~~~v~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~  194 (273)
T 2pnn_A          156 ACTNQLAIVKFLLQNSWQPADIS-ARDSVGNTVLHALVEV  194 (273)
T ss_dssp             HHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcccCCCCce-eeCCCCCcHHHHHHHc
Confidence            99999999999999   889887 8899999999998875

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=7.5e-30  Score=215.36  Aligned_cols=141  Identities=22%  Similarity=0.305  Sum_probs=130.7

Q ss_pred             cHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHH
Q 014730           32 TIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVH  111 (419)
Q Consensus        32 t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (419)
                      ++|+.|| .      .|+.++|+.|++.|  +++|.+|..|.||||+|+..++.+++++|+++|++ ++.++..|.||||
T Consensus         6 ~~L~~Aa-~------~G~~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh   75 (169)
T 4gpm_A            6 KRLIEAA-E------NGNKDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLH   75 (169)
T ss_dssp             HHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             HHHHHHH-H------cCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHH
Confidence            5789999 9      99999999999999  99999999999999999999999999999999999 7999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhC
Q 014730          112 NAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       112 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                      +|+..|+.+++++|+++|++++. ++..|+||||+|+..|+.+++++|++.|+++. .+|..|.|||++|+..
T Consensus        76 ~A~~~g~~~~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~  146 (169)
T 4gpm_A           76 HAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREH  146 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHc
Confidence            99999999999999999999999 99999999999999999999999999999877 5666666555555543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=9e-30  Score=226.73  Aligned_cols=173  Identities=18%  Similarity=0.151  Sum_probs=160.3

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccc-----cccCCCCChH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTL-----ARQDNHGHTA   75 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~-----~~~~~~g~t~   75 (419)
                      |++.|+.++|+.|++..+.+++.+ +..| .||||+|+ .      .|+.+++++|++.|  .++     +..|..|.||
T Consensus        10 A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g-~t~L~~A~-~------~g~~~~v~~Ll~~~--~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A           10 AAKENDVQALSKLLKFEGCEVHQR-GAMG-ETALHIAA-L------YDNLEAAMVLMEAA--PELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             HHHTTCHHHHHHHHTTTCSCTTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHHC--GGGGGCCCCSTTTTTCCH
T ss_pred             HHHcCCHHHHHHHHHhcCCCcccC-CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--chhccccccccCCCCcCH
Confidence            678999999999999889999999 9999 99999999 9      99999999999999  665     6677899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCC-------------CCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCc
Q 014730           76 VIFCAAKGNLKALKVLLKYNPDLTNIRDS-------------DGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAM  142 (419)
Q Consensus        76 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-------------~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t  142 (419)
                      ||+|+..|+.+++++|+++|++ ++.++.             .|.||||+|+..|+.+++++|+++|++++. .+..|.|
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t  156 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA-QDSLGNT  156 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCC
Confidence            9999999999999999999998 677655             799999999999999999999999999999 9999999


Q ss_pred             HHHHHHHcCcHHHH----HHHHhhCCCCC-----cCCCCCCCcHHHHHHhCCC
Q 014730          143 VLLFLIAANLYDVA----LDLLKLHPTIG-----RDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       143 ~l~~a~~~~~~~~~----~~Ll~~~~~~~-----~~~~~~g~~~l~~a~~~~~  186 (419)
                      |||+|+..++.+++    ++|++.|++..     +.+|..|.||||+|+..+.
T Consensus       157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            99999999999988    99999998763     4789999999999998753

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.1e-30  Score=233.87  Aligned_cols=147  Identities=17%  Similarity=0.127  Sum_probs=128.1

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHH----HHHHHhhCCCccccccC----CCCChHHHHHH---HcCCHHHHHHHHhc
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCL----LDKLATKVDPQTLARQD----NHGHTAVIFCA---AKGNLKALKVLLKY   94 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~----v~~Ll~~~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~~~~Ll~~   94 (419)
                      +..| +|+||.|| .      .|+.+.    +++|++.|  .+++..+    ..|.||||+|+   ..|+.+++++|++.
T Consensus         2 ~~~~-~~~L~~A~-~------~g~~~~v~~ll~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~   71 (260)
T 3jxi_A            2 KVFN-RPILFDIV-S------RGSPDGLEGLLSFLLTHK--KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI   71 (260)
T ss_dssp             CCCC-HHHHHHHH-H------HTCGGGGTTHHHHHHHHT--CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred             ccch-HHHHHHHH-H------hCCHHHHHHHHHHHHhcC--CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence            5678 99999999 9      999995    55555588  7777665    77999999999   77999999999998


Q ss_pred             CCCC----------CccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccC--------------CCCCcHHHHHHHc
Q 014730           95 NPDL----------TNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRG--------------NDGAMVLLFLIAA  150 (419)
Q Consensus        95 ~~~~----------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~--------------~~g~t~l~~a~~~  150 (419)
                      |++.          .+..+..|.||||+|+..|+.+++++|+++|++++. .+              ..|.||||+|+..
T Consensus        72 g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  150 (260)
T 3jxi_A           72 AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-QARGRFFQPKDEGGYFYFGELPLSLAACT  150 (260)
T ss_dssp             HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCEECCCSSSCCCCSCCSCSSHHHHHHHT
T ss_pred             cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc-cccccccCcccccccccCCCCHHHHHHHc
Confidence            7431          344455899999999999999999999999999998 77              6899999999999


Q ss_pred             CcHHHHHHHHh---hCCCCCcCCCCCCCcHHHHHHhC
Q 014730          151 NLYDVALDLLK---LHPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       151 ~~~~~~~~Ll~---~~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                      |+.+++++|++   .|+++. .+|..|.||||+|+..
T Consensus       151 g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~  186 (260)
T 3jxi_A          151 NQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAI  186 (260)
T ss_dssp             TCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHh
Confidence            99999999999   888887 8899999999999864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.1e-30  Score=233.25  Aligned_cols=170  Identities=14%  Similarity=0.107  Sum_probs=149.4

Q ss_pred             CccCCChHHHHHHHHhCCc---ccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPD---ALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVI   77 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~---~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~   77 (419)
                      |+..|+.++++.|++....   +++.+ +..| .||||+|+ .      .|+.+++++|++.|  ++++..|..|.||||
T Consensus        15 A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D           15 AIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQ-QTPLHLAV-I------TNQPEIAEALLGAG--CDPELRDFRGNTPLH   83 (236)
T ss_dssp             HHHTTCSSSSSCCCC-----CCCCCCC-CTTC-CCHHHHHH-H------TTCHHHHHCCCSCC--CCSCCCCTTCCCHHH
T ss_pred             HHHcCChhHHHHHHHHhhccHHHhhcc-CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCCCCcCCCCCCHHH
Confidence            6788999999999987433   68888 9999 99999999 9      99999999999999  999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCC-----CCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCC-CCCcHHHHHHHcC
Q 014730           78 FCAAKGNLKALKVLLKYNPD-----LTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGN-DGAMVLLFLIAAN  151 (419)
Q Consensus        78 ~A~~~g~~~~~~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~-~g~t~l~~a~~~~  151 (419)
                      +|+..|+.+++++|++++++     .++..+..|.||||+|+..|+.+++++|+++|++++. .+. .|.||||+|+..|
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHHHcC
Confidence            99999999999999999864     2467788899999999999999999999999999999 887 9999999999999


Q ss_pred             cHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHh
Q 014730          152 LYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQ  183 (419)
Q Consensus       152 ~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~  183 (419)
                      +.+++++|++.|+++. .+|..|.|||++|+.
T Consensus       163 ~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~  193 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVN-RVTYQGYSPYQLTWG  193 (236)
T ss_dssp             CHHHHHHHHTTTCCSC-CCCTTCCCGGGGCTT
T ss_pred             CHHHHHHHHHcCCCCC-cccCCCCCHHHHHHc
Confidence            9999999999998876 555555555554443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.5e-29  Score=220.14  Aligned_cols=173  Identities=18%  Similarity=0.206  Sum_probs=162.3

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.+.++.++.+.+.+++.+ +..| .||||+|+ .      .|+.+++++|++.|  ++++..+..|.||||+|+
T Consensus        12 A~~~g~~~~v~~ll~~~~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~   80 (201)
T 3hra_A           12 AANQRDTKKVKEILQDTTYQVDEV-DTEG-NTPLNIAV-H------NNDIEIAKALIDRG--ADINLQNSISDSPYLYAG   80 (201)
T ss_dssp             HHHTTCHHHHHHHHTCTTCCTTCC-CTTS-CCHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHhccHHHHHHHHHcCCCCCCCC-CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH
Confidence            678999999999999988799999 9999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCccccCCCCCcHHHHHHHcCc-----HH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEAT-NGVDIYRGNDGAMVLLFLIAANL-----YD  154 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~~g~t~l~~a~~~~~-----~~  154 (419)
                      ..|+.+++++|++.+...++.++..|.||||+|+..|+.+++++|++.| ++++. .+..|.||||+|+..+.     .+
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC-CCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCCCHHHHHHHhccchhhHHH
Confidence            9999999999996654338899999999999999999999999999999 89999 99999999999999887     99


Q ss_pred             HHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCC
Q 014730          155 VALDLLKLHPTIGRDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       155 ~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  186 (419)
                      ++++|++.|+++. .+|..|.||||+|+..+.
T Consensus       160 ~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          160 IVKLLMENGADQS-IKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             HHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCC
Confidence            9999999999987 899999999999998653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.7e-29  Score=212.98  Aligned_cols=163  Identities=13%  Similarity=0.052  Sum_probs=148.2

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.+.++.|++..+..++.+ +..| .||||+|+ .      .|+.+++++|++.|  .+++..|..|.||||+|+
T Consensus         9 A~~~g~~~~v~~ll~~~~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            9 LAAQGELDQLKEHLRKGDNLVNKP-DERG-FTPLIWAS-A------FGEIETVRFLLEWG--ADPHILAKERESALSLAS   77 (172)
T ss_dssp             HHHTTCHHHHHHHHTTCSGGGGCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHHT--CCTTCCCTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCcccccCC-CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCchhhcccCCCHHHHHH
Confidence            678999999999999977778888 9999 99999999 9      99999999999999  899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+
T Consensus        78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~  155 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-EADSGYTPMDLAVALGYRKVQQVIE  155 (172)
T ss_dssp             HTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999 799999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hhCCCCCcCCCCCCCcH
Q 014730          161 KLHPTIGRDNIDSRRIV  177 (419)
Q Consensus       161 ~~~~~~~~~~~~~g~~~  177 (419)
                      +++++.. .++..|.||
T Consensus       156 ~~~~~~~-~~~~~~~~p  171 (172)
T 3v30_A          156 NHILKLF-QSNLVPADP  171 (172)
T ss_dssp             HHHHHHS-CC-------
T ss_pred             HHHHHHh-cccCCCCCC
Confidence            9998776 677777766

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=4.9e-30  Score=240.58  Aligned_cols=210  Identities=17%  Similarity=0.130  Sum_probs=148.7

Q ss_pred             hHHHHHHHHhCCccccc-ccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCC-
Q 014730            7 WPGVEDFVTNHPDALTA-KIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGN-   84 (419)
Q Consensus         7 ~~~v~~ll~~~~~~~~~-~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~-   84 (419)
                      .++++.|++. +.++|. + +..| .||||+|| .      .|+.++|++|++.|  ++++.+|..|.||||+|+..|+ 
T Consensus       110 ~~~~~~l~~~-g~dvn~~~-d~~g-~TpLh~Aa-~------~g~~~~v~~Ll~~G--ad~n~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A          110 QEVNDAFPNT-QLNLNIPV-DEHG-NTPLHWLT-S------IANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             HHHHHHCTTS-CCCSCSCC-STTC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHH
T ss_pred             HHHHHHHHhc-CCCccccc-CCCC-CcHHHHHH-H------cCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHhccc
Confidence            3556666655 899999 7 9999 99999999 9      99999999999999  9999999999999999999998 


Q ss_pred             --HHHHHHHHhcCCCCCccCCCCCchHHHHHHH----cCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHH
Q 014730           85 --LKALKVLLKYNPDLTNIRDSDGYLPVHNAAY----YGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALD  158 (419)
Q Consensus        85 --~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  158 (419)
                        .++++.|++++...++.++..|.||||+|+.    .|+.+++++|++.++.... ... +            ..+...
T Consensus       178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~-~~~-~------------~~i~~~  243 (327)
T 1sw6_A          178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV-KKQ-N------------RPIQSG  243 (327)
T ss_dssp             HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HGG-G------------CCEEEC
T ss_pred             ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHh-ccc-c------------hHHHhh
Confidence              6788888888633378999999999999999    8999999999998542211 000 0            000011


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcccc
Q 014730          159 LLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTV  238 (419)
Q Consensus       159 Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (419)
                      +...|+++. .++..|.||||.|+.             .+.+                                      
T Consensus       244 ~~~~g~~~~-~~~~~g~t~L~~a~~-------------~~~L--------------------------------------  271 (327)
T 1sw6_A          244 TNEKESKPN-DKNGERKDSILENLD-------------LKWI--------------------------------------  271 (327)
T ss_dssp             -----------------CHHHHHCS-------------HHHH--------------------------------------
T ss_pred             hhcccCCcc-cccccCCChhHHHHH-------------HHHH--------------------------------------
Confidence            123355554 556666666665542             0000                                      


Q ss_pred             ccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhh
Q 014730          239 TSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLS  318 (419)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  318 (419)
                                                                                      ++...  +.....+ .
T Consensus       272 ----------------------------------------------------------------l~~~~--n~~d~~G-~  284 (327)
T 1sw6_A          272 ----------------------------------------------------------------IANML--NAQDSNG-D  284 (327)
T ss_dssp             ----------------------------------------------------------------HHHTT--TCCCTTS-C
T ss_pred             ----------------------------------------------------------------HHhCC--CCCCCCC-C
Confidence                                                                            00000  2222223 7


Q ss_pred             HHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhc
Q 014730          319 GAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHR  362 (419)
Q Consensus       319 t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~  362 (419)
                      ||||+|+..|+.++|++||+. |+|++.++..|+||||+|+++|
T Consensus       285 TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          285 TCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC--
T ss_pred             CHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcC
Confidence            899999999999999999999 9999999999999999998764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=2.6e-29  Score=229.52  Aligned_cols=154  Identities=19%  Similarity=0.254  Sum_probs=135.9

Q ss_pred             CccCCChHHHHHHHHh---CCcccc----cccCCCCCccHHHHHHHhhcccCCC---chHHHHHHHHhhCCCcc------
Q 014730            1 MIEKNDWPGVEDFVTN---HPDALT----AKIVEPGSKTIFHTIAELLVDDDSD---EATCLLDKLATKVDPQT------   64 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~---~~~~~~----~~~~~~g~~t~L~~A~~~~~~~~~~---g~~~~v~~Ll~~~~~~~------   64 (419)
                      ||+.|+.++|+.|++.   .+.+++    .+ +..| .||||+|| .      .   |+.+++++|++.|  ++      
T Consensus        20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-~~~g-~tpL~~A~-~------~~~~g~~~~v~~Ll~~g--a~~~~~~~   88 (273)
T 2pnn_A           20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKD-PETG-KTCLLKAM-L------NLHNGQNDTIALLLDVA--RKTDSLKQ   88 (273)
T ss_dssp             HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSC-TTTC-CCHHHHHH-H------SCBTTBCHHHHHHHHHH--HHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHhhcccccCCccccc-CcCC-CCHHHHHH-H------HHhcCChHHHHHHHHhh--ccccchhH
Confidence            6789999999999974   344443    34 7789 99999999 8      7   9999999999998  54      


Q ss_pred             -ccc----cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCC--------------CCchHHHHHHHcCCHHHHHHH
Q 014730           65 -LAR----QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS--------------DGYLPVHNAAYYGHKDTFQYL  125 (419)
Q Consensus        65 -~~~----~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~L~~A~~~g~~~~~~~L  125 (419)
                       ++.    .|..|.||||+|+..|+.+++++|+++|++ ++.++.              .|.||||+|+..|+.+++++|
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  167 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL  167 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence             232    567899999999999999999999999999 788876              799999999999999999999


Q ss_pred             Hh---cCCCCccccCCCCCcHHHHHHHcCc---------HHHHHHHHhhCCCCC
Q 014730          126 LE---ATNGVDIYRGNDGAMVLLFLIAANL---------YDVALDLLKLHPTIG  167 (419)
Q Consensus       126 l~---~g~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~  167 (419)
                      ++   .|++++. .+..|+||||+|+..|+         .+++++|++.|+++.
T Consensus       168 l~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          168 LQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             HHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence            99   9999999 99999999999999988         799999999887654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=3.4e-29  Score=229.18  Aligned_cols=190  Identities=16%  Similarity=0.213  Sum_probs=170.1

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .+++|.|+ .      .|+.+.++.++..+.+..+|..|..|.||||+|+..|+.+++++|++.|+..++..+..|.|||
T Consensus        77 ~~~l~~a~-~------~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL  149 (276)
T 4hbd_A           77 RSDAHPEL-V------RRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPI  149 (276)
T ss_dssp             STTCCHHH-H------HHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred             ccCCCHHH-H------HHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHH
Confidence            67888888 8      9999999999988722238899999999999999999999999999999833899999999999


Q ss_pred             HHHH-----HcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          111 HNAA-----YYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       111 ~~A~-----~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      |+|+     ..++.+++++|++.|...+. .+..|.||||+|+..|+.+++++|++.|+++. .+|..|           
T Consensus       150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d~~G-----------  216 (276)
T 4hbd_A          150 MLTALATLKTQDDIETVLQLFRLGNINAK-ASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDG-----------  216 (276)
T ss_dssp             HHGGGCCCCSHHHHHHHHHHHHHSCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS-----------
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCC-----------
Confidence            9999     66889999999999988888 88999999999999999999999999998765 332222           


Q ss_pred             CCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHH
Q 014730          186 YAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFH  265 (419)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (419)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (276)
T 4hbd_A          217 --------------------------------------------------------------------------------  216 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHH-hcCCcc
Q 014730          266 KLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIM-AYDSCS  344 (419)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~-~~~~d~  344 (419)
                                                                          .||||+|+..|+.++|++|++ . |+++
T Consensus       217 ----------------------------------------------------~TpLh~A~~~g~~~iv~~Ll~~~-gad~  243 (276)
T 4hbd_A          217 ----------------------------------------------------STALMCACEHGHKEIAGLLLAVP-SCDI  243 (276)
T ss_dssp             ----------------------------------------------------CCHHHHHHHHTCHHHHHHHHTST-TCCT
T ss_pred             ----------------------------------------------------CCHHHHHHHCCCHHHHHHHHhcC-CCCC
Confidence                                                                568888888899999999999 6 9999


Q ss_pred             ccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          345 NWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       345 ~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                      +.+|..|+||||+|+.+++.+++++|+++
T Consensus       244 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          244 SLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999999999988

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=8.4e-30  Score=226.47  Aligned_cols=197  Identities=13%  Similarity=0.064  Sum_probs=160.4

Q ss_pred             HHHHHhhCCCcccc---ccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q 014730           53 LDKLATKVDPQTLA---RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEAT  129 (419)
Q Consensus        53 v~~Ll~~~~~~~~~---~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g  129 (419)
                      ++.|+++|  .+++   ..+..|.||||.|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|++.|
T Consensus         1 v~~ll~~~--~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKA--GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             -----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccC--CCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            46778888  5544   4456788899999999999999999999998 7999999999999999999999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCC-CCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhccc
Q 014730          130 NGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNI-DSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQ  208 (419)
Q Consensus       130 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (419)
                      ++++. .+..|.||||+|+..|+.+++++|++.|+++. ..+ ..|.|                                
T Consensus        78 a~~n~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~g~t--------------------------------  123 (229)
T 2vge_A           78 ANVNS-PDSHGWTPLHCAASCNDTVICMALVQHGAAIF-ATTLSDGAT--------------------------------  123 (229)
T ss_dssp             CCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCSSTTCC--------------------------------
T ss_pred             CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCC--------------------------------
Confidence            99999 99999999999999999999999999998876 332 34444                                


Q ss_pred             CCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHH
Q 014730          209 SCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQ  288 (419)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (419)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (229)
T 2vge_A          124 --------------------------------------------------------------------------------  123 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHH--HHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHH
Q 014730          289 KLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSA--AILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKV  366 (419)
Q Consensus       289 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A--~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~i  366 (419)
                                                     |||+|  +..|+.+++++|++. |++++..+..|.||++.+.....   
T Consensus       124 -------------------------------pL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~---  168 (229)
T 2vge_A          124 -------------------------------AFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAEFG---  168 (229)
T ss_dssp             -------------------------------TGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSCBCCSST---
T ss_pred             -------------------------------HHHHHHHHhcChHHHHHHHHHc-CCCcccccCCchHHHHHHhhccc---
Confidence                                           55555  566789999999999 99999999999999997665543   


Q ss_pred             HHHHhhcccccceeeeccCCCCccchhcccccCCCC
Q 014730          367 FNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSSE  402 (419)
Q Consensus       367 v~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~~  402 (419)
                      .++|++.+ ...+++.+|..|+||||+||+.|..++
T Consensus       169 ~~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~  203 (229)
T 2vge_A          169 DELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGY  203 (229)
T ss_dssp             TBCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred             cccCcccc-ccccccccCCCcccHHHHHHHcCCcce
Confidence            35666663 233478899999999999999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=1e-28  Score=223.38  Aligned_cols=172  Identities=21%  Similarity=0.236  Sum_probs=154.0

Q ss_pred             CccCCChHHH----HHHHHhCCccccc----ccCCCCCccHHHHHHHhhcccCCC---chHHHHHHHHhhCCCccccc--
Q 014730            1 MIEKNDWPGV----EDFVTNHPDALTA----KIVEPGSKTIFHTIAELLVDDDSD---EATCLLDKLATKVDPQTLAR--   67 (419)
Q Consensus         1 A~~~g~~~~v----~~ll~~~~~~~~~----~~~~~g~~t~L~~A~~~~~~~~~~---g~~~~v~~Ll~~~~~~~~~~--   67 (419)
                      ||+.|+.+.|    +.|++. +.+++.    + +..| .||||+|+ .      .   |+.+++++|++.|  ++++.  
T Consensus         9 A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~-d~~g-~t~L~~A~-~------~~~~g~~~~v~~Ll~~g--~~~~~~~   76 (256)
T 2etb_A            9 VVSRGVPEELTGLLEYLRWN-SKYLTDSAYTE-GSTG-KTCLMKAV-L------NLQDGVNACIMPLLQID--KDSGNPK   76 (256)
T ss_dssp             HHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSB-TTTT-BCHHHHHH-H------TCBTTBCTTHHHHHHHH--HHTTCSS
T ss_pred             HHHcCCHHHHHHHHHHHHHc-CCCcccccccC-CCCC-CCHHHHHH-H------ccccchHHHHHHHHhcC--Ccccchh
Confidence            6788999754    555556 888888    7 9999 99999999 9      8   9999999999999  66553  


Q ss_pred             ---------cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC-------------CchHHHHHHHcCCHHHHHHH
Q 014730           68 ---------QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD-------------GYLPVHNAAYYGHKDTFQYL  125 (419)
Q Consensus        68 ---------~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~L~~A~~~g~~~~~~~L  125 (419)
                               .|..|.||||+|+..|+.+++++|+++|++ ++.++..             |.||||+|+..|+.+++++|
T Consensus        77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  155 (256)
T 2etb_A           77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL  155 (256)
T ss_dssp             CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                     346799999999999999999999999999 7888876             99999999999999999999


Q ss_pred             Hh---cCCCCccccCCCCCcHHHHHHH--cCcHH-------HHHHHHhhCCCCC------cCCCCCCCcHHHHHHhCCC
Q 014730          126 LE---ATNGVDIYRGNDGAMVLLFLIA--ANLYD-------VALDLLKLHPTIG------RDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       126 l~---~g~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~~------~~~~~~g~~~l~~a~~~~~  186 (419)
                      ++   .|++++. .+..|+||||+|+.  .++.+       ++++|++.|+++.      +.+|..|.||||+|+..+.
T Consensus       156 l~~~~~ga~~n~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          156 LENPHQPASLEA-TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             HHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HhccccCCCcCc-cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence            99   9999999 99999999999999  78888       9999999998872      3899999999999999764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.9e-28  Score=205.29  Aligned_cols=143  Identities=20%  Similarity=0.240  Sum_probs=85.7

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .++|+.|| .      .|+.+++++|++.|  .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.|||
T Consensus        15 ~~~l~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   84 (169)
T 2y1l_E           15 GKKLLEAA-R------AGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPL   84 (169)
T ss_dssp             HHHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             cchHHHHH-H------cCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHH
Confidence            55666666 5      56666666666665  55555555666666666666666666666666555 455555566666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      |+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|+++. .+|..|.||+++|+..+
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~  157 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNG  157 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhC
Confidence            666666666666666666665555 55556666666666666666666666655554 55555666666665543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=7.2e-28  Score=204.19  Aligned_cols=170  Identities=21%  Similarity=0.179  Sum_probs=146.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC
Q 014730           72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN  151 (419)
Q Consensus        72 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~  151 (419)
                      +.||||.|+..|+.+++++|++.++..++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-hcccCCCHHHHHHHCC
Confidence            568999999999999999999999886788899999999999999999999999999999999 9999999999999999


Q ss_pred             cHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCC
Q 014730          152 LYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDG  231 (419)
Q Consensus       152 ~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (419)
                      +.+++++|++.|+++. .+|..|                                                         
T Consensus        81 ~~~~v~~Ll~~g~~~~-~~~~~g---------------------------------------------------------  102 (172)
T 3v30_A           81 YTDIVGLLLERDVDIN-IYDWNG---------------------------------------------------------  102 (172)
T ss_dssp             CHHHHHHHHTTTCCTT-CCCTTS---------------------------------------------------------
T ss_pred             CHHHHHHHHHcCCCCC-CCCCCC---------------------------------------------------------
Confidence            9999999999987754 222221                                                         


Q ss_pred             CCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccc
Q 014730          232 DTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNF  311 (419)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  311 (419)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (172)
T 3v30_A          103 --------------------------------------------------------------------------------  102 (172)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCcc
Q 014730          312 QKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNI  390 (419)
Q Consensus       312 ~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~  390 (419)
                            .||||+|+..|+.++|++|++. |++++..+..|+||||+|+.+++.+++++|+++   ...+...+..|.||
T Consensus       103 ------~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~---~~~~~~~~~~~~~p  171 (172)
T 3v30_A          103 ------GTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENH---ILKLFQSNLVPADP  171 (172)
T ss_dssp             ------CCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH---HHHHSCC-------
T ss_pred             ------CCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH---HHHHhcccCCCCCC
Confidence                  5688888888999999999999 999999999999999999999999999999999   45566677777776

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=9.1e-28  Score=207.40  Aligned_cols=153  Identities=19%  Similarity=0.199  Sum_probs=146.2

Q ss_pred             ccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCC
Q 014730           20 ALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLT   99 (419)
Q Consensus        20 ~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~   99 (419)
                      .+|.+ |..| .||||+|| .      .|+.+++++|++.|  .+++..|..|.||||+|+..|+.+++++|+++|++ +
T Consensus        27 ~~n~~-d~~g-~t~L~~A~-~------~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~   94 (192)
T 2rfm_A           27 LRNYR-DSYN-RTPLMVAC-M------LGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-V   94 (192)
T ss_dssp             HHTCC-CTTC-CCHHHHHH-H------HTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-T
T ss_pred             HHhCc-CCCC-CCHHHHHH-H------cCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-C
Confidence            45677 9999 99999999 9      99999999999999  89999999999999999999999999999999999 7


Q ss_pred             ccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHH
Q 014730          100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLN  179 (419)
Q Consensus       100 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  179 (419)
                      +.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|+++. .+|..|.||++
T Consensus        95 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~  172 (192)
T 2rfm_A           95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEA  172 (192)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHH
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHH
Confidence            99999999999999999999999999999999999 99999999999999999999999999999987 89999999999


Q ss_pred             HHHhCCC
Q 014730          180 TLSQKPY  186 (419)
Q Consensus       180 ~a~~~~~  186 (419)
                      +|+..+.
T Consensus       173 ~A~~~~~  179 (192)
T 2rfm_A          173 SARIFGR  179 (192)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhCc
Confidence            9998753

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=5e-28  Score=206.62  Aligned_cols=154  Identities=17%  Similarity=0.224  Sum_probs=148.3

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      ||+.|+.+.|+.|++..+.+++.+ +..| .||||+|| .      .|+.+++++|++.|  .+++..|..|.||||+|+
T Consensus        12 A~~~g~~~~v~~ll~~~~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A           12 QCREGNAVAVRLWLDNTENDLNQG-DDHG-FSPLHWAC-R------EGRSAVVEMLIMRG--ARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             HHHHTCHHHHHHHHHCTTSCTTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCccccccc-CCCC-CCHHHHHH-H------cCcHHHHHHHHHcC--CCCCCcCCCCCCHHHHHH
Confidence            678999999999999988899998 9999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.|||++|+..++.+++++|+
T Consensus        81 ~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB-CCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch-hccCCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 799999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hhCCCCC
Q 014730          161 KLHPTIG  167 (419)
Q Consensus       161 ~~~~~~~  167 (419)
                      +.|+++.
T Consensus       159 ~~g~~~~  165 (179)
T 3f6q_A          159 KMGQNLN  165 (179)
T ss_dssp             HTTCCCS
T ss_pred             HhhcCcc
Confidence            9999876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=7.8e-28  Score=201.78  Aligned_cols=149  Identities=21%  Similarity=0.281  Sum_probs=84.9

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.++++.|+++ +.+++.+ +..| .||||+|+        .|+.+++++|++.|  .+++.+|..|.||||+|+
T Consensus        12 A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g-~t~L~~A~--------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A           12 AAARGDLEQLTSLLQN-NVNVNAQ-NGFG-RTALQVMK--------LGNPEIARRLLLRG--ANPDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             HHHHTCHHHHHHHTTS-CCCTTCC-CTTS-CCHHHHCC--------SSCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhC-CCCcccc-CccC-ccHHHHHH--------cCcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH
Confidence            3445555555555544 4555555 5555 55555555        45555555555555  555555555555665555


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC-CccccCCCCCcHHHHHHHcCcHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG-VDIYRGNDGAMVLLFLIAANLYDVALDL  159 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~L  159 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++ ++. .+..|.||||+|+..|+.+++++|
T Consensus        79 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L  156 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-RNHKGDTACDLARLYGRNEVVSLM  156 (162)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHH
Confidence            55555555555555555 455555555565555555555555555555554 244 555555555555555555555555


Q ss_pred             HhhCC
Q 014730          160 LKLHP  164 (419)
Q Consensus       160 l~~~~  164 (419)
                      +++|+
T Consensus       157 l~~GA  161 (162)
T 1ihb_A          157 QANGA  161 (162)
T ss_dssp             HHTC-
T ss_pred             HHhCC
Confidence            55554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.3e-27  Score=201.59  Aligned_cols=148  Identities=17%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             ccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHH
Q 014730            2 IEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAA   81 (419)
Q Consensus         2 ~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~   81 (419)
                      +..|+.++++.|++. +.+++.+ +..| .||||+|+ .      .|+.+++++|++.|  .+++..+..|.||||+|+.
T Consensus        11 ~~~g~~~~v~~ll~~-~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A           11 AAQGEMLYLATRIEQ-ENVINHT-DEEG-FTPLMWAA-A------HGQIAVVEFLLQNG--ADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             HHTTCHHHHHHHHHH-SSCTTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHc-CCCcCCC-CCCC-CCHHHHHH-H------CCCHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHH
Confidence            444455555555544 3444444 4444 55555555 4      45555555555554  4444444445555555555


Q ss_pred             cCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 014730           82 KGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLK  161 (419)
Q Consensus        82 ~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  161 (419)
                      .|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||+++|+..|+.+++++|++
T Consensus        79 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            5555555555555444 444444455555555555555555555555554444 44445555555555555555555544


Q ss_pred             hC
Q 014730          162 LH  163 (419)
Q Consensus       162 ~~  163 (419)
                      ++
T Consensus       157 ~~  158 (167)
T 3v31_A          157 HL  158 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.1e-30  Score=232.10  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=132.6

Q ss_pred             HHHHHHhCCcccccc--cCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHH
Q 014730           10 VEDFVTNHPDALTAK--IVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKA   87 (419)
Q Consensus        10 v~~ll~~~~~~~~~~--~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~   87 (419)
                      |+.|+++ +.+++..  .+..| .||||.|+ .      .|+.+++++|++.|  .+++.+|..|.||||+|+..|+.++
T Consensus         1 v~~ll~~-~~~~~~~~~~~~~~-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~   69 (229)
T 2vge_A            1 MRSVLRK-AGSPRKARRARLNP-LVLLLDAA-L------TGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSI   69 (229)
T ss_dssp             ----------CCCCCCCTTSCH-HHHHHHHH-H------HTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             Ceehhcc-CCCCccccccccch-hHHHHHHH-H------cCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            3567766 4444332  14556 88999999 9      99999999999999  8999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccC-CCCCcHHHHH--HHcCcHHHHHHHHhhCC
Q 014730           88 LKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRG-NDGAMVLLFL--IAANLYDVALDLLKLHP  164 (419)
Q Consensus        88 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~~  164 (419)
                      +++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.|++++. .+ ..|.||||+|  +..|+.+++++|++.|+
T Consensus        70 v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga  147 (229)
T 2vge_A           70 VDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA-TTLSDGATAFEKCDPYREGYADCATYLADVEQ  147 (229)
T ss_dssp             HHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC
Confidence            9999999999 899999999999999999999999999999999998 75 6999999999  99999999999999998


Q ss_pred             CCCcCCCCCCCcHHH
Q 014730          165 TIGRDNIDSRRIVLN  179 (419)
Q Consensus       165 ~~~~~~~~~g~~~l~  179 (419)
                      ++. ..|..|.+|++
T Consensus       148 ~~~-~~~~~~~~~l~  161 (229)
T 2vge_A          148 SMG-LMNSGAVYALW  161 (229)
T ss_dssp             HTT-TSGGGEEEESS
T ss_pred             Ccc-cccCCchHHHH
Confidence            877 56666666655

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=5.6e-27  Score=197.67  Aligned_cols=146  Identities=18%  Similarity=0.223  Sum_probs=140.1

Q ss_pred             CCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCc
Q 014730           28 PGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGY  107 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~  107 (419)
                      .| .||||.|+ .      .|+.+++++|++.+  .+++..|..|.||||+|+..|+.+++++|+++|++ ++.++..|.
T Consensus         2 ~~-~t~L~~A~-~------~g~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~   70 (167)
T 3v31_A            2 AN-SLSVHQLA-A------QGEMLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRE   70 (167)
T ss_dssp             TT-CCCHHHHH-H------TTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred             CC-cchHHHHH-H------CCCHHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCC
Confidence            46 99999999 9      99999999999999  88999999999999999999999999999999999 799999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCC
Q 014730          108 LPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       108 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  186 (419)
                      ||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|+++. .+|..|.||+++|+..+.
T Consensus        71 t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           71 SALSLACSKGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESGADPT-IETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCc
Confidence            999999999999999999999999999 99999999999999999999999999999987 899999999999998754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=3.6e-27  Score=195.91  Aligned_cols=142  Identities=17%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .||||.|+ .      .|+.+++++|++.|  .+++ .+..|.||||+|+..|+.+++++|+++|++ ++.++..|.|||
T Consensus         3 ~~~L~~A~-~------~g~~~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   71 (153)
T 1awc_B            3 GKKLLEAA-R------AGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPL   71 (153)
T ss_dssp             HHHHHHHH-H------HTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHH
T ss_pred             cHHHHHHH-H------cCCHHHHHHHHHcC--CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence            45666666 6      66666666666666  4443 355566666666666666666666666665 455566666666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      |+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|+++. .+|..|.||+++|+..+
T Consensus        72 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~  144 (153)
T 1awc_B           72 HMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             HHHHHcChHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcC
Confidence            666666666666666666666666 56666666666666666666666666666555 55666666666665544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.1e-27  Score=201.72  Aligned_cols=146  Identities=18%  Similarity=0.204  Sum_probs=84.9

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      +.+| .||||.|+ .      .|+.+++++|++.+ +.+++..+..|.||||+|+..|+.+++++|+++|++ ++.++..
T Consensus         5 ~~~~-~~~l~~A~-~------~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~   74 (165)
T 3twr_A            5 NSEA-DRQLLEAA-K------AGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKG   74 (165)
T ss_dssp             -CHH-HHHHHHHH-H------HTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             cchh-hHHHHHHH-H------hCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCC
Confidence            3444 56666666 5      56666666666544 244555555555666666666666666666666555 4555555


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHh
Q 014730          106 GYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQ  183 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~  183 (419)
                      |.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|+++. .+|..|.||+++|..
T Consensus        75 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           75 GLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLVKD  150 (165)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTGGGSCT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCChhHhHhc
Confidence            66666666666666666666666665555 55556666666666666666666666655554 555566666665443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=3.2e-27  Score=203.98  Aligned_cols=149  Identities=19%  Similarity=0.186  Sum_probs=143.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.++++.|++. +.+++.+ +..| .||||+|+ .      .|+.+++++|++.|  .+++..|..|.||||+|+
T Consensus        42 A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           42 ACMLGMENAIDKLVEN-FDKLEDK-DIEG-STALIWAV-K------NNRLGIAEKLLSKG--SNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             HHHHTCGGGHHHHHHH-HCCTTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHh-ccccccc-cccC-ccHHHHHH-H------cCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHH
Confidence            5788999999999998 7888888 9999 99999999 9      99999999999999  899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||+++|+..|+.+++++|+
T Consensus       110 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA-RDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999 799999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hhC
Q 014730          161 KLH  163 (419)
Q Consensus       161 ~~~  163 (419)
                      +.+
T Consensus       188 ~~~  190 (192)
T 2rfm_A          188 EVR  190 (192)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=6.7e-28  Score=218.47  Aligned_cols=176  Identities=18%  Similarity=0.156  Sum_probs=153.1

Q ss_pred             CccCCChHHHHHHHH---hCCcccccccC----CCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCcc---------
Q 014730            1 MIEKNDWPGVEDFVT---NHPDALTAKIV----EPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQT---------   64 (419)
Q Consensus         1 A~~~g~~~~v~~ll~---~~~~~~~~~~~----~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~---------   64 (419)
                      ||+.|+.+.|+.|++   ..+.+++.+ +    ..| .||||+|+ .   +++.|+.+++++|++.|  ++         
T Consensus        12 A~~~g~~~~v~~ll~~l~~~~~~~~~~-~~~~~~~g-~t~L~~A~-~---~~~~g~~~~v~~Ll~~g--~~~~~~~~~~~   83 (260)
T 3jxi_A           12 IVSRGSPDGLEGLLSFLLTHKKRLTDE-EFREPSTG-KTCLPKAL-L---NLSAGRNDTIPILLDIA--EKTGNMREFIN   83 (260)
T ss_dssp             HHHHTCGGGGTTHHHHHHHHTCCTTSG-GGSCTTTC-CCHHHHHH-T---SCBTTBCTHHHHHHHHH--HHTTCHHHHHT
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcchh-hhhccCCC-CcHHHHHH-H---HhhcCCHHHHHHHHHhc--ccccchHhhhc
Confidence            678899997666666   237777765 4    679 99999999 6   33459999999999987  43         


Q ss_pred             --ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC--------------CCCchHHHHHHHcCCHHHHHHHHh-
Q 014730           65 --LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRD--------------SDGYLPVHNAAYYGHKDTFQYLLE-  127 (419)
Q Consensus        65 --~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~g~~~~~~~Ll~-  127 (419)
                        ++..|..|.||||+|+..|+.+++++|+++|++ ++.++              ..|.||||+|+..|+.+++++|++ 
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence              444566899999999999999999999999999 78888              689999999999999999999999 


Q ss_pred             --cCCCCccccCCCCCcHHHHHHHcCc---------HHHHHHHHhhCCCCC------cCCCCCCCcHHHHHHhCCC
Q 014730          128 --ATNGVDIYRGNDGAMVLLFLIAANL---------YDVALDLLKLHPTIG------RDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       128 --~g~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~------~~~~~~g~~~l~~a~~~~~  186 (419)
                        .|++++. .+..|+||||+|+..++         .+++++|++.|+++.      +.+|..|.||||+|+..+.
T Consensus       163 ~~~ga~~~~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          163 GHKQADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             SSCCCCTTC-CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             cccCCCCcc-cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence              9999999 99999999999998887         799999999998873      3689999999999999764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=218.61  Aligned_cols=170  Identities=14%  Similarity=0.143  Sum_probs=155.3

Q ss_pred             ccCCChHHHHHHHHhCCcc--cccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCc-cccccCCCCChHHHH
Q 014730            2 IEKNDWPGVEDFVTNHPDA--LTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQ-TLARQDNHGHTAVIF   78 (419)
Q Consensus         2 ~~~g~~~~v~~ll~~~~~~--~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~-~~~~~~~~g~t~L~~   78 (419)
                      +..|+++.++.+++. ..+  +|.+ |..| .||||+|| .      .|+.+++++|++.|  . +++..|..|.||||+
T Consensus        84 ~~~~~~~~~~~l~~~-~~~~~~n~~-d~~g-~T~Lh~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~~g~tpL~~  151 (276)
T 4hbd_A           84 LVRRHLVTFRAMSAR-LLDYVVNIA-DSNG-NTALHYSV-S------HANFPVVQQLLDSG--VCKVDKQNRAGYSPIML  151 (276)
T ss_dssp             HHHHHHHHHHHHCHH-HHHHHHTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHHTS--CCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHhhcCcCC-CCCC-CCHHHHHH-H------CCCHHHHHHHHHCC--CCcCCCCCCCCCCHHHH
Confidence            345667778888766 333  7788 9999 99999999 9      99999999999999  6 899999999999999


Q ss_pred             HH-----HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcH
Q 014730           79 CA-----AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLY  153 (419)
Q Consensus        79 A~-----~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~  153 (419)
                      |+     ..++.+++++|++.|.. ++..+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~-~d~~G~TpLh~A~~~g~~  229 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV-QDDDGSTALMCACEHGHK  229 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHCCCH
Confidence            99     66889999999999987 688888999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHh-hCCCCCcCCCCCCCcHHHHHHhCCC
Q 014730          154 DVALDLLK-LHPTIGRDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       154 ~~~~~Ll~-~~~~~~~~~~~~g~~~l~~a~~~~~  186 (419)
                      +++++|++ .|+++. .+|..|.|||++|+..+.
T Consensus       230 ~iv~~Ll~~~gad~~-~~d~~g~TpL~~A~~~g~  262 (276)
T 4hbd_A          230 EIAGLLLAVPSCDIS-LTDRDGSTALMVALDAGQ  262 (276)
T ss_dssp             HHHHHHHTSTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCCc-CcCCCCCCHHHHHHHcCC
Confidence            99999999 788887 899999999999998753

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=6e-27  Score=195.11  Aligned_cols=147  Identities=24%  Similarity=0.258  Sum_probs=111.7

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.+.++.|++..+.+++.+ +..| .||||+ + .      .|+.+++++|++.|  .+++.+|..|.||||+|+
T Consensus         9 A~~~g~~~~v~~ll~~~~~~~~~~-~~~g-~t~L~~-~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            9 AAARGDVQEVRRLLHRELVHPDAL-NRFG-KTALQV-M-M------FGSTAIALELLKQG--ASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCCTTCC-CTTS-CCHHHH-S-C------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhhCcCcccc-CCCC-CcHHHH-H-H------cCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHH
Confidence            466777777777777755567676 7777 777777 6 6      77777777777777  777777777777777777


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|++. ++++. .+..|.||||+|+..|+.+++++|+
T Consensus        77 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR-RDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             HcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC-cCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            77777777777777777 677777777777777777777777777777 77777 7777777777777777777777777


Q ss_pred             hh
Q 014730          161 KL  162 (419)
Q Consensus       161 ~~  162 (419)
                      ++
T Consensus       154 ~~  155 (156)
T 1bd8_A          154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            53

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.9e-26  Score=194.95  Aligned_cols=125  Identities=28%  Similarity=0.358  Sum_probs=120.1

Q ss_pred             CCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC
Q 014730           27 EPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDG  106 (419)
Q Consensus        27 ~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g  106 (419)
                      ..| .||||+|+ .      .|+.+++++|++.|  .+++..|..|.||||+|+..|+.+++++|+++|++ ++.++..|
T Consensus        45 ~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g  113 (169)
T 2y1l_E           45 ASG-WTPLHLAA-F------NGHLEIVEVLLKNG--ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEG  113 (169)
T ss_dssp             TTS-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             CCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCC
Confidence            467 99999999 9      99999999999999  89999999999999999999999999999999999 79999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhC
Q 014730          107 YLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH  163 (419)
Q Consensus       107 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  163 (419)
                      .||||+|+..|+.+++++|+++|++++. .+..|.|||++|+..|+.+++++|++.|
T Consensus       114 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          114 HTPLHLAAMFGHLEIVEVLLKNGADVNA-QDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999999999999999999 9999999999999999999999999865

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.5e-28  Score=220.11  Aligned_cols=141  Identities=13%  Similarity=0.108  Sum_probs=97.0

Q ss_pred             CCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC
Q 014730           27 EPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDG  106 (419)
Q Consensus        27 ~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g  106 (419)
                      ..| .||||.|+ .      .|+.+.++.|+++|  .+++. +..|.||||.|+..|+.+++++|++.|++ ++.++..|
T Consensus         3 ~~g-~t~L~~a~-~------~~~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g   70 (239)
T 1ycs_B            3 ITG-QVSLPPGK-R------TNLRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEG   70 (239)
T ss_dssp             ---------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTS
T ss_pred             ccc-cccCchhh-h------hhhHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCC
Confidence            457 99999999 9      99999999999999  88875 47889999999999999999999999998 89999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCC-cHHHHH
Q 014730          107 YLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRR-IVLNTL  181 (419)
Q Consensus       107 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-~~l~~a  181 (419)
                      .||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|+++. ..+..|. ||+|+|
T Consensus        71 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           71 ITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKC  144 (239)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCcchHHHH
Confidence            9999999999999999999999999999 99999999999999999999999999999887 4544433 555543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.1e-26  Score=191.25  Aligned_cols=119  Identities=19%  Similarity=0.168  Sum_probs=115.8

Q ss_pred             CCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCch
Q 014730           29 GSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYL  108 (419)
Q Consensus        29 g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t  108 (419)
                      | .||||+|+ .      .|+.+++++|++.|  .+++..|..|.||||+|+..|+.+++++|+++|++ ++.++..|.|
T Consensus        34 g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t  102 (153)
T 1awc_B           34 G-TSPLHLAA-Q------YGHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMT  102 (153)
T ss_dssp             C-CCHHHHHH-H------HTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCC
T ss_pred             C-CCHHHHHH-H------cCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC-CCCCCCCCCC
Confidence            6 89999999 9      99999999999999  89999999999999999999999999999999999 7999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHH
Q 014730          109 PVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDL  159 (419)
Q Consensus       109 ~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  159 (419)
                      |||+|+..|+.+++++|+++|++++. .+..|.|||++|+..|+.+++++|
T Consensus       103 ~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          103 ALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999 999999999999999999999987

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=1.6e-26  Score=193.78  Aligned_cols=147  Identities=22%  Similarity=0.230  Sum_probs=138.2

Q ss_pred             CCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC
Q 014730           27 EPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDG  106 (419)
Q Consensus        27 ~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g  106 (419)
                      +.. .||||.|+ .      .|+.+++++|++.|  .+++..|..|.||||+|+. |+.+++++|+++|++ ++.++..|
T Consensus         3 ~~~-~~~L~~A~-~------~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g   70 (162)
T 1ihb_A            3 EPW-GNELASAA-A------RGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTG   70 (162)
T ss_dssp             --C-HHHHHHHH-H------HTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             chH-hhHHHHHH-H------cCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCC
Confidence            345 79999999 9      99999999999999  8999999999999999999 999999999999999 79999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCC
Q 014730          107 YLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       107 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  186 (419)
                      .||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|++....++..|.||||+|+..+.
T Consensus        71 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           71 FAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  149 (162)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence            9999999999999999999999999999 999999999999999999999999999998644899999999999998753

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1.4e-26  Score=188.39  Aligned_cols=134  Identities=18%  Similarity=0.129  Sum_probs=128.2

Q ss_pred             CcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 014730           18 PDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPD   97 (419)
Q Consensus        18 ~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~   97 (419)
                      +.+++.+ +..| .||||+|+ .      .|+.+++++|++.|  .+++.+|..|.||||+|+. |+.+++++|+++|++
T Consensus         2 ~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~   69 (136)
T 1d9s_A            2 SPGIHML-GGSS-DAGLATAA-A------RGQVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE   69 (136)
T ss_dssp             CCCCSCC-CCCC-SCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC
T ss_pred             CCCccCC-CCCC-ccHHHHHH-H------cCCHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC
Confidence            4567788 9999 99999999 9      99999999999999  9999999999999999999 999999999999999


Q ss_pred             CCccCCCC-CchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCC
Q 014730           98 LTNIRDSD-GYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPT  165 (419)
Q Consensus        98 ~~~~~~~~-g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  165 (419)
                       ++.++.. |.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++.+++++|+++|++
T Consensus        70 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           70 -PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-CDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             -SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCC-CSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             -CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             7999999 99999999999999999999999999999 999999999999999999999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=2.4e-26  Score=193.34  Aligned_cols=124  Identities=19%  Similarity=0.175  Sum_probs=117.3

Q ss_pred             CCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCc
Q 014730           28 PGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGY  107 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~  107 (419)
                      .| .||||+|+ .      .|+.+++++|++.|  .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.
T Consensus        41 ~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~  109 (165)
T 3twr_A           41 RQ-STPLHFAA-G------YNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKF  109 (165)
T ss_dssp             TC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred             CC-CCHHHHHH-H------cChHHHHHHHHhcC--CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCC
Confidence            35 79999999 9      99999999999999  99999999999999999999999999999999999 799999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCC
Q 014730          108 LPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHP  164 (419)
Q Consensus       108 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  164 (419)
                      ||||+|+..|+.+++++|+++|++++. .+..|.||+++|.. ++.+++++|++.|+
T Consensus       110 t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          110 TPLHEAAAKGKYEICKLLLQHGADPTK-KNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            999999999999999999999999999 99999999999776 89999999998875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.7e-26  Score=206.62  Aligned_cols=185  Identities=10%  Similarity=0.033  Sum_probs=127.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 014730           69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLI  148 (419)
Q Consensus        69 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~  148 (419)
                      +..|.||||.|++.|..++++.|+++|++ ++. +..|.||||.|+..|+.+++++|++.|++++. .+..|.||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHH
Confidence            35699999999999999999999999998 565 46789999999999999999999999999999 9999999999999


Q ss_pred             HcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCC
Q 014730          149 AANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQN  228 (419)
Q Consensus       149 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (419)
                      ..|+.+++++|++.|+++. .+|..|                                                      
T Consensus        79 ~~g~~~~v~~Ll~~ga~~~-~~d~~g------------------------------------------------------  103 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNVN-AADSDG------------------------------------------------------  103 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCTT-CCCTTC------------------------------------------------------
T ss_pred             HcCCHHHHHHHHHcCCCCC-ccCCCC------------------------------------------------------
Confidence            9999999999999998775 333222                                                      


Q ss_pred             CCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhh
Q 014730          229 VDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVW  308 (419)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  308 (419)
                                                                                                      
T Consensus       104 --------------------------------------------------------------------------------  103 (239)
T 1ycs_B          104 --------------------------------------------------------------------------------  103 (239)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCC-chHHHH--HhhchHHHHHHHhhcc-c-----ccce
Q 014730          309 TNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGH-TIFDHA--VLHRREKVFNLIQGVN-F-----TTFL  379 (419)
Q Consensus       309 ~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~-t~Lh~A--v~~~~~~iv~~L~~~~-~-----~~~~  379 (419)
                               .||||+|+..|+.++|++|++. |++++..+..|. ||||+|  +..++.+++++|++.+ .     ....
T Consensus       104 ---------~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~  173 (239)
T 1ycs_B          104 ---------WTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI  173 (239)
T ss_dssp             ---------CCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEE
T ss_pred             ---------CCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceE
Confidence                     5677777778889999999999 999999995554 999999  7889999999999986 1     1122


Q ss_pred             eeeccCCCCccchhcccccCCC
Q 014730          380 FSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       380 ~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      ....|..|.|++|+|.+.|+.-
T Consensus       174 ~al~d~~~~~~~eLa~~~G~~i  195 (239)
T 1ycs_B          174 YALWDYEPQNDDELPMKEGDCM  195 (239)
T ss_dssp             EESSCBCCSSTTBCCBCSSCEE
T ss_pred             EEEeccCCCCCCcccccCCCEE
Confidence            3445888999999999888743

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.7e-28  Score=232.96  Aligned_cols=144  Identities=16%  Similarity=0.088  Sum_probs=115.2

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCc-cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC--CccC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQ-TLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDL--TNIR  102 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~--~~~~  102 (419)
                      +.++ .||||+|+ .      .|+.++|++|++.|.+. ..+..+..|.||||+||..|+.+++++|+++|++.  .+..
T Consensus        89 g~~~-~T~Lh~Aa-~------~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~  160 (376)
T 2aja_A           89 GIKS-EVICFVAA-I------TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ  160 (376)
T ss_dssp             TCCH-HHHHHHHH-H------HCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS
T ss_pred             CCCc-CCHHHHHH-H------cCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC
Confidence            4456 89999999 9      99999999999998211 12234557889999999999999999999999741  1222


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccc-cCCCCCcHHHHHH-HcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHH
Q 014730          103 DSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY-RGNDGAMVLLFLI-AANLYDVALDLLKLHPTIGRDNIDSRRIVLNT  180 (419)
Q Consensus       103 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~~g~t~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~  180 (419)
                      +.+ .||||+|+..|+.+++++|+++|++++.. .+..|.||||+|+ ..|+.+++++|++.|+        .|.||+++
T Consensus       161 ~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~  231 (376)
T 2aja_A          161 AEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIH  231 (376)
T ss_dssp             HHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHC
T ss_pred             CCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHH
Confidence            223 89999999999999999999999986531 4567899999999 9999999999998663        27899999


Q ss_pred             HHhCCC
Q 014730          181 LSQKPY  186 (419)
Q Consensus       181 a~~~~~  186 (419)
                      |+..+.
T Consensus       232 Aa~~g~  237 (376)
T 2aja_A          232 EFEYGE  237 (376)
T ss_dssp             TTTTTT
T ss_pred             HHHCCC
Confidence            988754

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=8.2e-26  Score=192.85  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=136.4

Q ss_pred             CCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC
Q 014730           27 EPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDG  106 (419)
Q Consensus        27 ~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g  106 (419)
                      +++ .++||.|| .      .|+.+++++|++.+ +.+++..|..|.||||+|+..|+.+++++|+++|++ ++.++..|
T Consensus         3 ~~~-~~~l~~A~-~------~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g   72 (179)
T 3f6q_A            3 PEF-MDDIFTQC-R------EGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGD   72 (179)
T ss_dssp             -----CCHHHHH-H------HTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred             HHH-HHHHHHHH-H------cCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCC
Confidence            456 89999999 9      99999999999996 478999999999999999999999999999999999 79999999


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhC
Q 014730          107 YLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       107 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                      .||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|+++. .+|..|.||+++|+..
T Consensus        73 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A           73 DTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTSCCGGGGSCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCCCCcHHHHHHH
Confidence            9999999999999999999999999999 99999999999999999999999999999988 8999999999999764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=2e-26  Score=192.08  Aligned_cols=142  Identities=20%  Similarity=0.164  Sum_probs=120.6

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      +..| .||||+|+ .      .|+.+++++|++.|  .+++..|..|.||||+|+ .|+.+++++|+++|++ ++.++..
T Consensus         9 ~~~~-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~   76 (156)
T 1bi7_B            9 MEPS-ADWLATAA-A------RGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPA   76 (156)
T ss_dssp             -CCS-TTHHHHHH-H------HTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTT
T ss_pred             Cccc-hHHHHHHH-H------cCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCC
Confidence            7788 99999999 9      99999999999999  899999999999999986 9999999999999999 8999999


Q ss_pred             Cch-HHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 014730          106 GYL-PVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTL  181 (419)
Q Consensus       106 g~t-~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a  181 (419)
                      |.| |||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|+++. .++..|.||.+.+
T Consensus        77 g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~~~~~  151 (156)
T 1bi7_B           77 TLTRPVHDAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-GSNHARIDAAEGP  151 (156)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC-ccCcCcCcccccC
Confidence            999 99999999999999999999999999 99999999999999999999999999999988 8899999998744

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.1e-25  Score=185.70  Aligned_cols=143  Identities=20%  Similarity=0.186  Sum_probs=135.7

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .||||.|+ .      .|+.+++++|++.. +.+++..|..|.||||+ +..|+.+++++|+++|++ ++.++..|.|||
T Consensus         3 ~~~L~~A~-~------~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   72 (156)
T 1bd8_A            3 GDRLSGAA-A------RGDVQEVRRLLHRE-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHH-H------HTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             chHHHHHH-H------hCCHHHHHHHHHhh-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHH
Confidence            79999999 9      99999999999993 47899999999999999 999999999999999999 799999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCC
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  186 (419)
                      |+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++. +++. .+|..|.|||++|+..+.
T Consensus        73 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           73 HDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCHHHHHHHSCC
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCHHHHHHHcCc
Confidence            999999999999999999999999 999999999999999999999999998 7776 899999999999998754

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=2.5e-27  Score=224.87  Aligned_cols=137  Identities=15%  Similarity=0.059  Sum_probs=111.2

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC--CccCCCCCch
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDL--TNIRDSDGYL  108 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~--~~~~~~~g~t  108 (419)
                      .+++++|+..      .++.++++++++.|  .+.       .||||+|+..|+.+++++|+++|+..  ....+..|.|
T Consensus        66 ll~~~~a~~~------~~~~~~~~~l~~~g--~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~t  130 (376)
T 2aja_A           66 LLCLYYAHYN------RNAKQLWSDAHKKG--IKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ  130 (376)
T ss_dssp             HHHHHHHHTT------TTCTTHHHHHHHHT--CCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHH
T ss_pred             HHHHHHHHhc------CCCHHHHHHHHHcC--CCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCC
Confidence            5678887723      47789999999988  433       49999999999999999999998731  1234557889


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCC---ccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcC--CCCCCCcHHHHHH-
Q 014730          109 PVHNAAYYGHKDTFQYLLEATNGV---DIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRD--NIDSRRIVLNTLS-  182 (419)
Q Consensus       109 ~L~~A~~~g~~~~~~~Ll~~g~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~~~l~~a~-  182 (419)
                      |||+|+..|+.+++++|+++|+++   +. .+.+ .||||+|+..|+.+++++|+++|+++. .  .|..|.||||+|+ 
T Consensus       131 pL~~Aa~~G~~eiv~~Ll~~gad~~~~~i-~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~-~~~~d~~g~TpL~~Aa~  207 (376)
T 2aja_A          131 AFRLAAENGHLHVLNRLCELAPTEIMAMI-QAEN-YHAFRLAAENGHLHVLNRLCELAPTEA-TAMIQAENYYAFRWAAV  207 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCTTTHHHHH-SHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH-HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcccccc-CCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc-hhccCCCCCCHHHHHHH
Confidence            999999999999999999999863   33 2233 999999999999999999999998865 4  7788999999999 


Q ss_pred             hCC
Q 014730          183 QKP  185 (419)
Q Consensus       183 ~~~  185 (419)
                      ..+
T Consensus       208 ~~G  210 (376)
T 2aja_A          208 GRG  210 (376)
T ss_dssp             TTC
T ss_pred             HCC
Confidence            865

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.9e-24  Score=172.77  Aligned_cols=126  Identities=27%  Similarity=0.383  Sum_probs=121.6

Q ss_pred             CCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCc
Q 014730           28 PGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGY  107 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~  107 (419)
                      +| .||||.|+ .      .|+.+++++|++.|  .+++..+..|.||||+|+..|+.+++++|+++|++ ++.++..|.
T Consensus         1 ~g-~t~L~~A~-~------~~~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~   69 (126)
T 1n0r_A            1 NG-RTPLHLAA-R------NGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGR   69 (126)
T ss_dssp             CC-CCHHHHHH-H------HTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred             CC-ccHHHHHH-H------cCcHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCC
Confidence            46 99999999 9      99999999999999  88999999999999999999999999999999999 799999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCC
Q 014730          108 LPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPT  165 (419)
Q Consensus       108 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  165 (419)
                      ||||+|+..|+.+++++|+++|++++. .+..|.|||++|+..++.+++++|+++|++
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           70 TPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999 999999999999999999999999999874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=9.4e-25  Score=177.50  Aligned_cols=126  Identities=25%  Similarity=0.282  Sum_probs=120.1

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      ...| .||||.|| .      .|+.+++++|++.|  .+++..|..|.||||+|+..|+.+++++|+++|++ ++.++..
T Consensus        11 ~~~~-~t~l~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~   79 (136)
T 2jab_A           11 GSDL-GKKLLEAA-R------AGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAI   79 (136)
T ss_dssp             -CHH-HHHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             cccc-cHHHHHHH-H------hCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCC
Confidence            5567 99999999 9      99999999999999  89999999999999999999999999999999999 7999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhC
Q 014730          106 GYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH  163 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  163 (419)
                      |.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|
T Consensus        80 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           80 GFTPLHLAAFIGHLEIAEVLLKHGADVNA-QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCcC-cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999 9999999999999999999999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=2.7e-25  Score=190.50  Aligned_cols=147  Identities=11%  Similarity=0.030  Sum_probs=117.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccccC-CCCCccHHHHHHHhhcccCCCchH----HHHHHHHhhCCCccccccCCCCChH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIV-EPGSKTIFHTIAELLVDDDSDEAT----CLLDKLATKVDPQTLARQDNHGHTA   75 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~-~~g~~t~L~~A~~~~~~~~~~g~~----~~v~~Ll~~~~~~~~~~~~~~g~t~   75 (419)
                      |++.|+.+.++.++...   ++.+ + ..| .||||+|+ .      .|+.    +++++|++.|  +++|.+|..|.||
T Consensus        13 Aa~~g~~~~~~~l~~~~---~~~~-~~~~g-~T~Lh~A~-~------~~~~~~~~~iv~~Ll~~G--advn~~d~~g~Tp   78 (186)
T 3t8k_A           13 AAMLGTYEDFLELFEKG---YEDK-ESVLK-SNILYDVL-R------NNNDEARYKISMFLINKG--ADIKSRTKEGTTL   78 (186)
T ss_dssp             HHHHSCHHHHHHHHHHS---SSCH-HHHHT-TTHHHHHT-T------CSCHHHHHHHHHHHHHTT--CCSSCCCTTCCCT
T ss_pred             HHHcCCHHHHHHHHhcC---cccc-cccCC-CCHHHHHH-H------cCCcchHHHHHHHHHHCC--CCCCCCCCCCCcH
Confidence            56778888888888763   3344 4 568 88888888 7      7754    5888888888  8888888888888


Q ss_pred             HHHHHHcCC------HHHHHHHHhcCCCCCccCCCCCc-hHHHHHHHcC-----CHHHHHHHHh-cCCCCccccCCCCCc
Q 014730           76 VIFCAAKGN------LKALKVLLKYNPDLTNIRDSDGY-LPVHNAAYYG-----HKDTFQYLLE-ATNGVDIYRGNDGAM  142 (419)
Q Consensus        76 L~~A~~~g~------~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~g-----~~~~~~~Ll~-~g~~~~~~~~~~g~t  142 (419)
                      ||+|+..|+      .+++++|+++|++ ++.+|..|. ||||+|+..+     +.+++++|++ .|++++. ++..|.|
T Consensus        79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~-~d~~G~T  156 (186)
T 3t8k_A           79 FFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI-KDKWGLT  156 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC-CCTTSCC
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc-cCCCCCC
Confidence            888888776      5778888888888 788888888 8888888844     3568888888 8888888 8888888


Q ss_pred             HHHHHHHcCcHHHHHHHHhhC
Q 014730          143 VLLFLIAANLYDVALDLLKLH  163 (419)
Q Consensus       143 ~l~~a~~~~~~~~~~~Ll~~~  163 (419)
                      |||+|+..|+.+++++|.+..
T Consensus       157 pL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          157 ALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            888888888888888888764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=2.1e-24  Score=175.62  Aligned_cols=129  Identities=19%  Similarity=0.192  Sum_probs=118.0

Q ss_pred             cccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccC
Q 014730           23 AKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIR  102 (419)
Q Consensus        23 ~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~  102 (419)
                      .+ +..| .||||+|+ .      .|+.+++++|++.|  .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+
T Consensus         5 ~~-~~~g-~t~L~~A~-~------~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~   72 (137)
T 3c5r_A            5 FT-NHRG-ETLLHIAS-I------KGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTT   72 (137)
T ss_dssp             CC-CTTC-CCHHHHHH-H------HTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCC
T ss_pred             Cc-CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCc
Confidence            44 8889 99999999 9      99999999999999  89999999999999999999999999999999999 7999


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCC
Q 014730          103 DSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHP  164 (419)
Q Consensus       103 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  164 (419)
                      +..|.||||+|+..|+.+++++|+++|++++. .+..|.||+++|+..+..+++++|.+.+.
T Consensus        73 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            99999999999999999999999999999999 99999999999999998888887776543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=3.4e-24  Score=183.63  Aligned_cols=143  Identities=10%  Similarity=-0.041  Sum_probs=129.4

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccC-CCCChHHHHHHHcCCH----HHHHHHHhcCCCCCccCCCC
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD-NHGHTAVIFCAAKGNL----KALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      .++|+.|+ .      .|+.+.++.++..+    ++..+ ..|.||||+|+..|+.    +++++|+++|++ ++.++..
T Consensus         7 ~~~l~~Aa-~------~g~~~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~   74 (186)
T 3t8k_A            7 YRTVSAAA-M------LGTYEDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKE   74 (186)
T ss_dssp             CSSHHHHH-H------HSCHHHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTT
T ss_pred             ccHHHHHH-H------cCCHHHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCC
Confidence            78999999 9      99999999999987    34555 6799999999999975    599999999999 8999999


Q ss_pred             CchHHHHHHHcCC------HHHHHHHHhcCCCCccccCCCCC-cHHHHHHHc-----CcHHHHHHHHh-hCCCCCcCCCC
Q 014730          106 GYLPVHNAAYYGH------KDTFQYLLEATNGVDIYRGNDGA-MVLLFLIAA-----NLYDVALDLLK-LHPTIGRDNID  172 (419)
Q Consensus       106 g~t~L~~A~~~g~------~~~~~~Ll~~g~~~~~~~~~~g~-t~l~~a~~~-----~~~~~~~~Ll~-~~~~~~~~~~~  172 (419)
                      |.||||+|+..|+      .+++++|+++|++++. ++..|. ||||+|+..     +..+++++|++ .|+++. .+|.
T Consensus        75 g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~-~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d~  152 (186)
T 3t8k_A           75 GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA-LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDK  152 (186)
T ss_dssp             CCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS-CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCCT
T ss_pred             CCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc-cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-ccCC
Confidence            9999999999986      6889999999999999 999999 999999984     45679999999 899998 8999


Q ss_pred             CCCcHHHHHHhCCCC
Q 014730          173 SRRIVLNTLSQKPYA  187 (419)
Q Consensus       173 ~g~~~l~~a~~~~~~  187 (419)
                      .|.||||+|+..+..
T Consensus       153 ~G~TpL~~A~~~~~~  167 (186)
T 3t8k_A          153 WGLTALEFVKRCQKP  167 (186)
T ss_dssp             TSCCHHHHHHTTTCH
T ss_pred             CCCCHHHHHHHcCCH
Confidence            999999999987644

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=3.7e-23  Score=164.91  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=105.3

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      +..| .||||.|+ .      .|+.+++++|++.|  .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus         4 ~~~~-~~~l~~A~-~------~~~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~   72 (123)
T 3aaa_C            4 GSMC-DKEFMWAL-K------NGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKH   72 (123)
T ss_dssp             ---C-HHHHHHHH-H------TTCHHHHHHHHHTT--CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTT
T ss_pred             cccc-chHHHHHH-H------cCCHHHHHHHHHcC--CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCC
Confidence            5567 99999999 9      99999999999999  88999999999999999999999999999999999 7999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHH
Q 014730          106 GYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDV  155 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~  155 (419)
                      |.||||+|+..|+.+++++|+++|++++. .+..|.||+|+|...+..++
T Consensus        73 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           73 HITPLLSAVYEGHVSCVKLLLSKGADKTV-KGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHhCCHHHHHH
Confidence            99999999999999999999999999999 99999999999954444333

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=9.5e-24  Score=175.78  Aligned_cols=132  Identities=20%  Similarity=0.162  Sum_probs=110.5

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCCh-HHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHT-AVIFC   79 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t-~L~~A   79 (419)
                      |++.|+.++|++|+++ +.+++.+ +..| .||||+|+        .|+.+++++|++.|  ++++.+|..|.| |||+|
T Consensus        19 A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g-~t~L~~A~--------~~~~~~v~~Ll~~g--~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B           19 AAARGRVEEVRALLEA-GANPNAP-NSYG-RRPIQVMM--------MGSARVAELLLLHG--AEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             HHHHTCHHHHHHHHTT-TCCTTCC-CSSS-CCTTTSSC--------TTCHHHHHHHHTTT--CCCCCCCTTTCCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHc-CCCCCCC-CCCC-CCHHHHHH--------cCCHHHHHHHHHcC--CCCCCcCCCCCcHHHHHH
Confidence            6788999999999987 8899999 9999 99999976        89999999999999  999999999999 99999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHH
Q 014730           80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFL  147 (419)
Q Consensus        80 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a  147 (419)
                      +..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||.+.+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG-SNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc-cCcCcCcccccC
Confidence            999999999999999999 799999999999999999999999999999999999 999999987633

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=8.9e-24  Score=180.90  Aligned_cols=137  Identities=20%  Similarity=0.152  Sum_probs=117.4

Q ss_pred             cCCCchHHHHHHHHhhCCCcc---------ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHH
Q 014730           44 DDSDEATCLLDKLATKVDPQT---------LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAA  114 (419)
Q Consensus        44 ~~~~g~~~~v~~Ll~~~~~~~---------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  114 (419)
                      |++.|..+++++|+..+....         ....+..|.||||.|+..|+.+++++|++ +.+ ++.++..|.||||+|+
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~   84 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVA   84 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHH
Confidence            344566666666665431111         11235688999999999999999999999 888 7999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCccccC-CCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhC
Q 014730          115 YYGHKDTFQYLLEATNGVDIYRG-NDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       115 ~~g~~~~~~~Ll~~g~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                      ..|+.+++++|+++|++++. .+ ..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A           85 GLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREI  153 (183)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC-CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHh
Confidence            99999999999999999998 77 899999999999999999999999999988 8999999999999873

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=4e-23  Score=182.48  Aligned_cols=130  Identities=18%  Similarity=0.185  Sum_probs=116.3

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCCccCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKY-NPDLTNIRDS  104 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~  104 (419)
                      +..| .||||+|| .      .|+.+++++|++.|  .+++.+|..|.||||+||..|+.+++++|+++ |++ ++.++.
T Consensus        70 ~~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~  138 (222)
T 3ehr_A           70 AESI-DNPLHEAA-K------RGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNK  138 (222)
T ss_dssp             EEEE-SCHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCT
T ss_pred             cccc-cccccccc-c------cCcHHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCC
Confidence            5678 99999999 9      99999999999999  89999999999999999999999999999999 888 899999


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCC
Q 014730          105 DGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIG  167 (419)
Q Consensus       105 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  167 (419)
                      .|.||||+|+..|+.+++++|+++|++++. .+..|.|||++|+..+..++++.|+..++...
T Consensus       139 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          139 LGDTALHAAAWKGYADIVQLLLAKGARTDL-RNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCSCC-CCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-ccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            999999999999999999999999999999 99999999999999999999999999987654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=2e-22  Score=163.69  Aligned_cols=116  Identities=22%  Similarity=0.180  Sum_probs=110.9

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.++++.|++. +.+++.+ |..| .||||+|| .      .|+.+++++|++.|  ++++.+|..|.||||+|+
T Consensus        21 A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           21 AARAGQDDEVRILMAN-GADVNAK-DEYG-LTPLYLAT-A------HGHLEIVEVLLKNG--ADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCC-CTTS-CCHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHc-CCCCCCc-CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHH
Confidence            6789999999999988 8889998 9999 99999999 9      99999999999999  999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEAT  129 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g  129 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|++.|
T Consensus        89 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999 7999999999999999999999999999986

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.9e-23  Score=178.83  Aligned_cols=113  Identities=24%  Similarity=0.310  Sum_probs=106.9

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC-C
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRD-S  104 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~  104 (419)
                      +..| .||||.|+ .      .|+.++++.|++ |  .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.++ .
T Consensus        41 ~~~g-~t~L~~A~-~------~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~  108 (183)
T 3deo_A           41 VSEY-ETPWWTAA-R------KADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMR  108 (183)
T ss_dssp             HHHH-HHHHHHHH-H------TTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSS
T ss_pred             CCCC-CCHHHHHH-H------cCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCC
Confidence            4578 99999999 9      999999999999 8  89999999999999999999999999999999999 78887 8


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC
Q 014730          105 DGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN  151 (419)
Q Consensus       105 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~  151 (419)
                      .|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..+
T Consensus       109 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          109 GGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAREIL  154 (183)
T ss_dssp             SSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHhcCcHHHHHHHHHcCCCCcC-CCCCCCCHHHHHHHhc
Confidence            899999999999999999999999999999 9999999999998753

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=2e-22  Score=163.65  Aligned_cols=119  Identities=13%  Similarity=0.112  Sum_probs=114.1

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCC-CC
Q 014730           63 QTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGND-GA  141 (419)
Q Consensus        63 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~-g~  141 (419)
                      .+++..+..|.||||.|+..|+.+++++|+++|++ ++.++..|.||||+|+. |+.+++++|+++|++++. .+.. |.
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~~g~   79 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC-ADPATLT   79 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC-CBTTTTB
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC-cCCCCCC
Confidence            67899999999999999999999999999999999 79999999999999999 999999999999999999 8888 99


Q ss_pred             cHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCC
Q 014730          142 MVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKP  185 (419)
Q Consensus       142 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~  185 (419)
                      ||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..+
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~  122 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQG  122 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcC
Confidence            99999999999999999999999987 89999999999999864

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.6e-22  Score=185.33  Aligned_cols=137  Identities=12%  Similarity=0.099  Sum_probs=124.3

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccc------cCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCcc
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLAR------QDNHGHTAVIFCAAK---GNLKALKVLLKYNPDLTNI  101 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~  101 (419)
                      .++|+.|+ .      .|+.+.++.|+..|  .+++.      .+..|.||||+|+..   |+.+++++|+++|++ ++.
T Consensus       152 ~~~L~~A~-~------~g~~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~  221 (301)
T 2b0o_E          152 PQRLWTAI-C------NRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDA  221 (301)
T ss_dssp             HHHHHHHH-H------TTCHHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTC
T ss_pred             HHHHhhhh-h------ccCHHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCC
Confidence            67899999 9      99999999999999  88887      688999999999997   899999999999999 799


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHH
Q 014730          102 RDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTL  181 (419)
Q Consensus       102 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a  181 (419)
                      +|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|++       .|.||||+|
T Consensus       222 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A  293 (301)
T 2b0o_E          222 KAADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVD  293 (301)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSC-CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHH
Confidence            999999999999999999999999999999999 999999999999999999999999998864       478999999


Q ss_pred             HhCC
Q 014730          182 SQKP  185 (419)
Q Consensus       182 ~~~~  185 (419)
                      +..+
T Consensus       294 ~~~g  297 (301)
T 2b0o_E          294 YSWV  297 (301)
T ss_dssp             ----
T ss_pred             HhcC
Confidence            8764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=4.2e-22  Score=161.93  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=110.7

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCc
Q 014730           63 QTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAM  142 (419)
Q Consensus        63 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t  142 (419)
                      .++ .+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.|
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t   78 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQNDS   78 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCGGGCC
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-cCCCCCC
Confidence            445 6789999999999999999999999999999 799999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhC
Q 014730          143 VLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQK  184 (419)
Q Consensus       143 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~  184 (419)
                      |||+|+..|+.+++++|++.|+++. .+|..|.||+++|+..
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~  119 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDE  119 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhc
Confidence            9999999999999999999999987 8999999999998753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=8.9e-22  Score=157.10  Aligned_cols=118  Identities=26%  Similarity=0.355  Sum_probs=112.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |++.|+.+++++|++. +.+++.+ +..| .||||+|+ .      .|+.+++++|++.|  .+++.+|..|.||||+|+
T Consensus         9 A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g-~t~L~~A~-~------~~~~~~~~~Ll~~g--~~~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            9 AARNGHLEVVKLLLEA-GADVNAK-DKNG-RTPLHLAA-R------NGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             HHHHTCHHHHHHHHHH-TCCTTCC-CTTS-CCHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCcHHHHHHHHHc-CCCCCCc-CCCC-CcHHHHHH-H------cCcHHHHHHHHHcC--CCCcccCCCCCcHHHHHH
Confidence            6788999999999998 7888888 9999 99999999 9      99999999999999  899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG  131 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~  131 (419)
                      ..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++
T Consensus        77 ~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999 799999999999999999999999999999985

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=7.5e-22  Score=176.93  Aligned_cols=137  Identities=19%  Similarity=0.102  Sum_probs=116.9

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .+++.+++ .      .|+.+.+..+...+     ...+..|.||||.|+..|+.+++++|++ +.+ ++.++..|.|||
T Consensus        16 ~~~~l~~~-~------~g~~~~~~~~~~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L   81 (244)
T 3ui2_A           16 AMEYLIEW-K------DGHSPSWVPSSYIA-----ADVVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTAL   81 (244)
T ss_dssp             EEEEEEEE-S------SCCCCEEEEGGGSC-----HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHH
T ss_pred             ccHHHHHH-H------cCCCcccccccccc-----cccccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHH
Confidence            44444544 4      55555444433333     2234578999999999999999999999 888 799999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccC-CCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHh
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRG-NDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQ  183 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~  183 (419)
                      |+|+..|+.+++++|+++|++++. .+ ..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+.
T Consensus        82 ~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           82 LFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELARE  153 (244)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHH
Confidence            999999999999999999999998 77 889999999999999999999999999988 899999999999976

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=9.5e-23  Score=182.77  Aligned_cols=111  Identities=24%  Similarity=0.327  Sum_probs=105.0

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC-C
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRD-S  104 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~  104 (419)
                      +..| .||||+|| .      .|+.+++++|++ |  .+++.+|..|.||||+||..|+.+++++|+++|++ ++.++ .
T Consensus        42 ~~~g-~t~L~~A~-~------~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~  109 (244)
T 3ui2_A           42 VSEY-ETPWWTAA-R------KADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMR  109 (244)
T ss_dssp             HHHH-HHHHHHHH-T------TTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSS
T ss_pred             ccCC-CCHHHHHH-H------cCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCC
Confidence            4568 99999999 9      999999999999 8  89999999999999999999999999999999999 78887 7


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHH
Q 014730          105 DGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIA  149 (419)
Q Consensus       105 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~  149 (419)
                      .|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+.
T Consensus       110 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          110 GGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELARE  153 (244)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHH
Confidence            899999999999999999999999999999 99999999999974

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=2.9e-21  Score=153.82  Aligned_cols=111  Identities=15%  Similarity=0.153  Sum_probs=104.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 014730           69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLI  148 (419)
Q Consensus        69 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~  148 (419)
                      +..|.||||.|+..|+.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHH
Confidence            46788999999999999999999999998 799999999999999999999999999999999999 9999999999999


Q ss_pred             HcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 014730          149 AANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLS  182 (419)
Q Consensus       149 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  182 (419)
                      ..++.+++++|++.|+++. .+|..|.||+++|.
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhC
Confidence            9999999999999999987 89999999999984

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=4.6e-22  Score=183.73  Aligned_cols=133  Identities=20%  Similarity=0.161  Sum_probs=116.9

Q ss_pred             CccCCChHHHHHHHHhCCccccc------ccCCCCCccHHHHHHHhhcccCCC---chHHHHHHHHhhCCCccccccCCC
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTA------KIVEPGSKTIFHTIAELLVDDDSD---EATCLLDKLATKVDPQTLARQDNH   71 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~------~~~~~g~~t~L~~A~~~~~~~~~~---g~~~~v~~Ll~~~~~~~~~~~~~~   71 (419)
                      |+..|+.+.|+.|++. +.+++.      + +..| .||||+|+ .      .   |+.+++++|++.|  ++++.+|..
T Consensus       158 A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~-~~~g-~t~Lh~A~-~------~~~~~~~~iv~~Ll~~g--advn~~d~~  225 (301)
T 2b0o_E          158 AICNRDLLSVLEAFAN-GQDFGQPLPGPDA-QAPE-ELVLHLAV-K------VANQASLPLVDFIIQNG--GHLDAKAAD  225 (301)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTSCEECSSS-CSCE-ECHHHHHH-H------TCCTTTHHHHHHHHHHS--SCTTCCCTT
T ss_pred             hhhccCHHHHHHHHhc-CCcccccCCCccc-CCCC-ccHHHHHH-H------hcccCcHHHHHHHHhcC--CCCCCCCCC
Confidence            5789999999999977 778877      5 8889 99999999 8      7   8999999999999  999999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC
Q 014730           72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAAN  151 (419)
Q Consensus        72 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~  151 (419)
                      |.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.|++       .|.||||+|+..|
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWV  297 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcC
Confidence            99999999999999999999999999 899999999999999999999999999999863       5789999999887


Q ss_pred             cH
Q 014730          152 LY  153 (419)
Q Consensus       152 ~~  153 (419)
                      +.
T Consensus       298 ~~  299 (301)
T 2b0o_E          298 IS  299 (301)
T ss_dssp             --
T ss_pred             Cc
Confidence            63

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=8e-21  Score=143.33  Aligned_cols=91  Identities=30%  Similarity=0.424  Sum_probs=68.7

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .||||+|+ .      .|+.+++++|++.|  .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.|||
T Consensus         3 ~t~L~~A~-~------~~~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l   72 (93)
T 1n0q_A            3 RTPLHLAA-R------NGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPL   72 (93)
T ss_dssp             CCHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CcHHHHHH-H------cCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHH
Confidence            77777777 7      77777777777777  77777777777777777777777777777777777 677777777777


Q ss_pred             HHHHHcCCHHHHHHHHhcCCC
Q 014730          111 HNAAYYGHKDTFQYLLEATNG  131 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~  131 (419)
                      |+|+..|+.+++++|+++|++
T Consensus        73 ~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           73 HLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC
Confidence            777777777777777777753

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.1e-20  Score=178.50  Aligned_cols=145  Identities=16%  Similarity=0.156  Sum_probs=119.3

Q ss_pred             CCCccHHHHHHHhhcccCCC-chHHHHHHHHhhCCCccccccC--CCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCC
Q 014730           28 PGSKTIFHTIAELLVDDDSD-EATCLLDKLATKVDPQTLARQD--NHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDS  104 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~-g~~~~v~~Ll~~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~  104 (419)
                      .+ .|+||.|+ .      . |+.++++.|++.|  ++++..+  ..|.||||+|+..|+.+++++|+++|++ ++.+|.
T Consensus       198 ~~-~t~L~~Aa-~------~~g~~~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~  266 (368)
T 3jue_A          198 HP-GALLFRAS-G------HPPSLPTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADS  266 (368)
T ss_dssp             CH-HHHHHHHT-S------SSCCHHHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred             CC-CcHHHHHH-H------ccCCHHHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCC
Confidence            45 68999999 8      8 9999999999999  8999888  8999999999999999999999999999 899999


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCC--cCCCCCCCcHHHHHH
Q 014730          105 DGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIG--RDNIDSRRIVLNTLS  182 (419)
Q Consensus       105 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~--~~~~~~g~~~l~~a~  182 (419)
                      .|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++.+++++|+..+....  ...+..+.++++.+.
T Consensus       267 ~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~-~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          267 AGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHCcCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            999999999999999999999999999999 99999999999999999999999998763321  134566778887765


Q ss_pred             hC
Q 014730          183 QK  184 (419)
Q Consensus       183 ~~  184 (419)
                      ..
T Consensus       346 ~~  347 (368)
T 3jue_A          346 DF  347 (368)
T ss_dssp             --
T ss_pred             HH
Confidence            54

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.9e-20  Score=141.26  Aligned_cols=93  Identities=30%  Similarity=0.449  Sum_probs=88.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHc
Q 014730           71 HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAA  150 (419)
Q Consensus        71 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~  150 (419)
                      +|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHc
Confidence            489999999999999999999999999 799999999999999999999999999999999999 999999999999999


Q ss_pred             CcHHHHHHHHhhCCC
Q 014730          151 NLYDVALDLLKLHPT  165 (419)
Q Consensus       151 ~~~~~~~~Ll~~~~~  165 (419)
                      |+.+++++|++.|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=1.6e-20  Score=171.48  Aligned_cols=125  Identities=12%  Similarity=0.092  Sum_probs=117.4

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCcc------ccccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCcc
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQT------LARQDNHGHTAVIFCAAK---GNLKALKVLLKYNPDLTNI  101 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~------~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~  101 (419)
                      .++|+.|+ .      .|+.+.++.+++.|  .+      ++..|..|.||||+|+..   |+.+++++|+++|++ ++.
T Consensus       131 l~~l~~a~-~------~~d~~~~~~ll~~g--~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~  200 (278)
T 1dcq_A          131 LHSLCEAV-K------TRDIFGLLQAYADG--VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDK  200 (278)
T ss_dssp             HHHHHHHH-H------TTCHHHHHHHHHTT--CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTC
T ss_pred             hhhhhhHh-h------hcccHHHHHHHHhh--cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccc
Confidence            57899999 9      99999999999999  66      445588999999999999   899999999999999 899


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCC
Q 014730          102 RDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTI  166 (419)
Q Consensus       102 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  166 (419)
                      +|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|+..
T Consensus       201 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          201 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-ccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999 9999999999999999999999999998753

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.4e-20  Score=147.94  Aligned_cols=107  Identities=25%  Similarity=0.332  Sum_probs=91.4

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      |.+| .||||+|| .      .|+.+++++|++.|  .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.++..
T Consensus         6 d~~g-~t~L~~A~-~------~~~~~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~   74 (115)
T 2l6b_A            6 SKDG-NTPLHNAA-K------NGHAEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKD   74 (115)
T ss_dssp             SCSS-CCHHHHHH-H------HTCHHHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTT
T ss_pred             CCCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCC
Confidence            7788 89999999 8      88899999999888  88888888889999999988999999999988888 7888888


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHH
Q 014730          106 GYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVL  144 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l  144 (419)
                      |.||||+|+..|+.+++++|+++|++++. .+..|.+|-
T Consensus        75 g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~-~~~~~~~~~  112 (115)
T 2l6b_A           75 GNTPEHLAKKNGHHEIVKLLDAKGADVNA-RSWGSSHHH  112 (115)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTSSSHHH-HSCCCC---
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCCc-CCccccccc
Confidence            88999999988899999999999888888 777777763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=6.5e-20  Score=167.37  Aligned_cols=119  Identities=24%  Similarity=0.342  Sum_probs=110.2

Q ss_pred             CccCCChHHHHHHHHhCCccc------ccccCCCCCccHHHHHHHhhcccCCC---chHHHHHHHHhhCCCccccccCCC
Q 014730            1 MIEKNDWPGVEDFVTNHPDAL------TAKIVEPGSKTIFHTIAELLVDDDSD---EATCLLDKLATKVDPQTLARQDNH   71 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~------~~~~~~~g~~t~L~~A~~~~~~~~~~---g~~~~v~~Ll~~~~~~~~~~~~~~   71 (419)
                      |+..||.+.+..+++. +.++      +.. +..| .||||+|+ .      .   |+.+++++|++.|  +++|.+|..
T Consensus       137 a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~-~~~g-~t~Lh~A~-~------~~~~~~~~~v~~Ll~~g--a~in~~d~~  204 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYAD-GVDLTEKIPLANG-HEPD-ETALHLAV-R------SVDRTSLHIVDFLVQNS--GNLDKQTGK  204 (278)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTSBCCCSSC-SSTT-CBHHHHHH-H------HCCTTTHHHHHHHHHHC--SCTTCCCTT
T ss_pred             HhhhcccHHHHHHHHh-hcchhhhcccccc-ccCC-CCcchHHH-H------hcccchHHHHHHHHHCC--CCccccCCC
Confidence            5678999999999988 6664      444 7889 99999999 8      7   8999999999999  999999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q 014730           72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGV  132 (419)
Q Consensus        72 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~  132 (419)
                      |.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       205 g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          205 GSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999 8999999999999999999999999999999854

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=2.1e-20  Score=164.88  Aligned_cols=121  Identities=16%  Similarity=0.151  Sum_probs=105.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhh-CCCccccccCCCCChHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATK-VDPQTLARQDNHGHTAVIFC   79 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~L~~A   79 (419)
                      |+..|+.++|+.|++. +.+++.+ +..| .||||+|| .      .|+.+++++|++. |  ++++.+|..|.||||+|
T Consensus        80 A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g-~t~L~~A~-~------~~~~~~v~~Ll~~~g--~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           80 AAKRGNLSWLRECLDN-RVGVNGL-DKAG-STALYWAC-H------GGHKDIVEMLFTQPN--IELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHTTSTT--CCCCCCCTTSCCHHHHH
T ss_pred             ccccCcHHHHHHHHhC-CCCcccc-CCCC-CCHHHHHH-H------cCCHHHHHHHHcCCC--CCccccCCCCCCHHHHH
Confidence            5788999999999987 8889998 9999 99999999 9      9999999999999 7  89999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 014730           80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI  134 (419)
Q Consensus        80 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~  134 (419)
                      +..|+.+++++|+++|++ ++.++..|.||||+|+..|+.++++.|++.|+....
T Consensus       148 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             HHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            999999999999999999 799999999999999999999999999999987766

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=5.2e-20  Score=144.66  Aligned_cols=109  Identities=23%  Similarity=0.247  Sum_probs=101.1

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 014730           67 RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLF  146 (419)
Q Consensus        67 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~  146 (419)
                      .+|..|.||||+|+..|+.+++++|++++++ ++.++..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-CCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHH
Confidence            4688999999999999999999999999999 799999999999999999999999999999999999 99999999999


Q ss_pred             HHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHH
Q 014730          147 LIAANLYDVALDLLKLHPTIGRDNIDSRRIVL  178 (419)
Q Consensus       147 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l  178 (419)
                      |+..++.+++++|++.|+++. .++..|.+|-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n-~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVN-ARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHH-HHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCC-cCCccccccc
Confidence            999999999999999999987 6788887774

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=4.7e-19  Score=167.39  Aligned_cols=136  Identities=15%  Similarity=0.088  Sum_probs=111.1

Q ss_pred             CccC-CChHHHHHHHHhCCcccccccC--CCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHH
Q 014730            1 MIEK-NDWPGVEDFVTNHPDALTAKIV--EPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVI   77 (419)
Q Consensus         1 A~~~-g~~~~v~~ll~~~~~~~~~~~~--~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~   77 (419)
                      |+.. |++++++.|++. +.++|.. +  ..| .||||+|| .      .|+.+++++|++.|  ++++..|..|.||||
T Consensus       206 Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g-~TpLh~Aa-~------~g~~~iv~~LL~~G--advn~~d~~G~TpLh  273 (368)
T 3jue_A          206 ASGHPPSLPTMADALAH-GADVNWV-NGGQDN-ATPLIQAT-A------ANSLLACEFLLQNG--ANVNQADSAGRGPLH  273 (368)
T ss_dssp             HTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHH
T ss_pred             HHHccCCHHHHHHHHHc-CCCCCcc-ccccCC-CCHHHHHH-H------CCCHHHHHHHHHcC--CCCCCCCCCCCCHHH
Confidence            5667 999999999987 8899988 7  789 99999999 9      99999999999999  999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccc--cCCCCCcHHHHHHH
Q 014730           78 FCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY--RGNDGAMVLLFLIA  149 (419)
Q Consensus        78 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~~g~t~l~~a~~  149 (419)
                      +|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++.+......  .+..+.|+++.+..
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            99999999999999999999 7999999999999999999999999999887432211  45567777765543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=1.5e-17  Score=129.48  Aligned_cols=95  Identities=23%  Similarity=0.272  Sum_probs=85.6

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCc
Q 014730           63 QTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAM  142 (419)
Q Consensus        63 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t  142 (419)
                      ......|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|++++. .+..|.|
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t   92 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKT   92 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCC
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCc
Confidence            34556788999999999999999999999999998 799999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHcCcHHHHHHH
Q 014730          143 VLLFLIAANLYDVALDL  159 (419)
Q Consensus       143 ~l~~a~~~~~~~~~~~L  159 (419)
                      |||+|+..|+.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=1.6e-17  Score=129.33  Aligned_cols=89  Identities=20%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             CCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 014730           26 VEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD  105 (419)
Q Consensus        26 ~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  105 (419)
                      +.+| .||||+|+ .      .|+.+++++|++.|  .+++.+|..|.||||+|+..|+.+++++|+++|++ ++.++..
T Consensus        21 ~~~g-~t~L~~A~-~------~g~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~   89 (110)
T 2zgd_A           21 GSDL-GKKLLEAA-R------AGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKF   89 (110)
T ss_dssp             -CCH-HHHHHHHH-H------HTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             CCcc-chHHHHHH-H------cCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccC
Confidence            8889 99999999 9      99999999999999  99999999999999999999999999999999999 7999999


Q ss_pred             CchHHHHHHHcCCHHHHHHH
Q 014730          106 GYLPVHNAAYYGHKDTFQYL  125 (419)
Q Consensus       106 g~t~L~~A~~~g~~~~~~~L  125 (419)
                      |.||||+|+..|+.+++++|
T Consensus        90 g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             SCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	419
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.004
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 6e-10
 Identities = 41/299 (13%), Positives = 89/299 (29%), Gaps = 19/299 (6%)

Query: 74  TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD 133
           T +   +  G+L  +K LL+      N+ +     P+H AA  GH +  +YLL+  N   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQ--NKAK 58

Query: 134 I-YRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLN-TLSQKPYAFASG 191
           +  +  D    L         ++   LL+ +             +             + 
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 192 SRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFG 251
                 +  +         +  +  +V   +   +++   +       + +H        
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 178

Query: 252 STQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNF 311
              ++    G   H      +  L   A   +V   + L                  +  
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-------------GSAN 225

Query: 312 QKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLI 370
            +S Q    +  AA  G  E+V   +++  +  N  N+ G T            V +++
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 39/327 (11%), Positives = 91/327 (27%), Gaps = 18/327 (5%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            +    T +   A  G+ +  K LL+    + N +  D   P+H AA  GH +  + LLE
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLE 87

Query: 128 ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYA 187
                ++        + +     ++  V   L K              + +     K   
Sbjct: 88  NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 147

Query: 188 FASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKES 247
                                  + +    +  ++    +     +  +   + +H    
Sbjct: 148 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 207

Query: 248 TPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVV 307
                  +    +G   +  +      L   A                 E+V ++     
Sbjct: 208 QNQVEVARSLLQYGGSANAESVQGVTPLHLAA------------QEGHAEMVALLLSKQA 255

Query: 308 WTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVF 367
             N    + L+   L          V + ++ +    + + + G+T              
Sbjct: 256 NGNLGNKSGLT--PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV---ASHYGNI 310

Query: 368 NLIQGVNFTTFLFSSRDKSGNNILHLA 394
            L++ +       +++ K G + LH A
Sbjct: 311 KLVKFLLQHQADVNAKTKLGYSPLHQA 337

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +   G++ +   A +G+   + +LLK      N   SDG  P+  A   G+      L  
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKV 384

Query: 128 ATN 130
            T+
Sbjct: 385 VTD 387

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 53/324 (16%), Positives = 103/324 (31%), Gaps = 50/324 (15%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
               G T +   A  G ++  ++LL+ +    N    +G  P+H A ++ + D  + LL 
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 128 ATNGVDIY-RGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPY 186
              G   +    +G   L      N  +VA  LL+   +   +++           Q   
Sbjct: 187 --RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-----------QGVT 233

Query: 187 AFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKE 246
                ++ G    +      Q +               +  N  G T    V  + H   
Sbjct: 234 PLHLAAQEGHAEMVALLLSKQANG--------------NLGNKSGLTPLHLVAQEGHVP- 278

Query: 247 STPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGV 306
                    +    G+M     RM +  L               +H   +++V+ + +  
Sbjct: 279 ------VADVLIKHGVMVDATTRMGYTPLHV------------ASHYGNIKLVKFLLQHQ 320

Query: 307 VWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKV 366
              N +     S  +  AA  G  ++V   ++   +  N  + DG T    A       V
Sbjct: 321 ADVNAKTKLGYS-PLHQAAQQGHTDIV-TLLLKNGASPNEVSSDGTTPLAIAKRLGYISV 378

Query: 367 FNLIQGVNFTTFLFSSRDKSGNNI 390
            ++++ V   T      DK   + 
Sbjct: 379 TDVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
            +   G T +   A +G+ + + +LL    +  N+ +  G  P+H  A  GH      L+
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 127 EATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDN 170
           +    VD         + +     N+  V   L        +  
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 328

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.5 bits (132), Expect = 3e-09
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           QD  G T ++  A +G ++ +  L++    +    D+  +     A    H +       
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDR 275

Query: 128 A 128
            
Sbjct: 276 C 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +   G TA+ + A   N+  +K L+       + +D DG  P+  AA  G  +   YL++
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 128 ATNGVDIY-RGNDGAMVLLFLIAANLYDVALDLLK 161
              G  +               A N +++     +
Sbjct: 243 --QGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 29/293 (9%), Positives = 76/293 (25%), Gaps = 28/293 (9%)

Query: 79  CAAKGNLKALKVLLKYNPDLTNIRDS-DGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRG 137
             A G+    + + + +    NI D       +H  A     +  + L+       I  G
Sbjct: 8   TEAAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 64

Query: 138 NDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRL 197
            D   +              D  +  P +       RR+V   +                
Sbjct: 65  ADVNAM--------------DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 110

Query: 198 RRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQIT 257
                        + +           +              ++   + ++     ++  
Sbjct: 111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 170

Query: 258 AIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQL 317
            +      + +   +     L  + +V +         + IV+ +         ++    
Sbjct: 171 KVDYDGAARKDSEKYKGRTALHYAAQVSN---------MPIVKYLVGEKGSNKDKQDEDG 221

Query: 318 SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLI 370
              ++ AA  G  EVV  +++   +     +   HT    A  +    + ++ 
Sbjct: 222 KTPIMLAAQEGRIEVV-MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 5e-09
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +   G T +I    K +L  ++ LL+      N  DSDG   +  A     K   + L +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 128 ATNGVDI 134
              G   
Sbjct: 275 --RGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           A +DN     +I      ++  ++ LL+   ++    +  G+ P+HNA     +D  + L
Sbjct: 2   AVEDN---HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 126 L 126
           L
Sbjct: 59  L 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDG----YLPVHNAAYYGHKDTF 122
           R    G TA++  A KG+++ LK+LL       N  D+ G       + ++     +   
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202

Query: 123 QYLLEATNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLKLH 163
             LL+  +G D+  RG  G   L+  +      +   LL+  
Sbjct: 203 HLLLD--HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 67  RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
           R    G TA+   AAKG  + LK+L++   D+ NI+D DG+ P+H AA++G ++  + L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 127 EATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLH 163
           E  N  D+   N        +   ++     +L K  
Sbjct: 253 E--NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 66  ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
            +         +   + G+ + +  LL+   D+ N  + DG   +H A    + D  ++
Sbjct: 34  TKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKF 91

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 65  LARQDNHGHTAVIFCAAKGNLKALKVLLKY--NPDLTNIRDSDGYLPVHNAAYYGHKDTF 122
                  G TA+       +   L  LL +    +  ++++  G   +H AA  G   T 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 123 QYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDS 173
           + L  A  GV +        + L       +  A  LL+  P+  RD  D+
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLA-CRVRAHTCACVLLQPRPSHPRDASDT 111

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (112), Expect = 8e-07
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +   G T +           L++LLK   D    R   G  P+ +A    +    + L  
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 128 A 128
            
Sbjct: 247 H 247

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 20/134 (14%), Positives = 34/134 (25%), Gaps = 10/134 (7%)

Query: 30  SKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALK 89
                  + +LL    +          +         ++           A  G   AL 
Sbjct: 54  GTKNMEQVRQLLCLYYAHYNRNAKQLWSD------AHKKGIKSEVICFVAAITGCSSALD 107

Query: 90  V---LLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLF 146
               LL  +  +  +  ++ Y     AA  GH      L E      +            
Sbjct: 108 TLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 166

Query: 147 LIAANLYDVALDLL 160
           L A N +   L+ L
Sbjct: 167 LAAENGHLHVLNRL 180

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 4/74 (5%)

Query: 58  TKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLT----NIRDSDGYLPVHNA 113
             +  ++   Q  +    +I    +  L  ++ LL                D    +  A
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

Query: 114 AYYGHKDTFQYLLE 127
              G++     LL 
Sbjct: 325 LRLGNQGACALLLS 338

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 74  TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
             +     +     ++ LL   P L   +D DG +P+H +  +   +   +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF 52

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           QD  G T +    A+G+  A  +L++      ++ D+ G      A    ++   ++ L 
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 224

Query: 128 ATNGVD 133
             N VD
Sbjct: 225 --NVVD 228

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 56  LATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLL--KYNPDLTNIRDSDGYLPVHNA 113
              K   + +    N   +       +     L+ L       ++ N +DS+G   ++ A
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

Query: 114 AYYGHKDTFQYLLEATNGVDIYRGND 139
           A  G+      LL+   G D +  N 
Sbjct: 267 ARLGNISIVDALLD--YGADPFIANK 290

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 1   MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTI----AELLVDDDSDEATCLLDKL 56
           +I  +   G       + D L   IV+  ++ I        ++    +   + + L +  
Sbjct: 184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 243

Query: 57  ATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAA 114
              +    L  QD++G T +   A  GN+  +  LL Y  D   I +  G  PV   A
Sbjct: 244 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 6/109 (5%)

Query: 31  KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKV 90
           K       + L+  +  E    L+  ++  + +  +      H +          +    
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFD----SLLQEVNDA 91

Query: 91  LLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGND 139
                 +L    D  G  P+H      + +  ++L++  +G +   G++
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK--HGSNRLYGDN 138

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
            + +G T + + A+K   +   +LL+   +  + +D      +H AA  G+      LL 
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLY 157

Query: 128 ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLK 161
                +I +  +G   L         + A  L+ 
Sbjct: 158 YKASTNI-QDTEGNTPLHLACDEERVEEAKLLVS 190

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 73  HTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
           +  V   A  G L+ LK  +  +  L    D D    +H A   GH +  ++
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF 55

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           QD+   T +   A +G+ +A K LL    +   I D    LP   A+   H D  + L
Sbjct: 152 QDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 86  KALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
           + +  LL    +L    D  G   +H AA +   D  + L
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKD 120
           Q   G +A+   + +G L  ++ L++   D  ++++     P+  A      D
Sbjct: 173 QMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVID 224

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 35/137 (25%)

Query: 30  SKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAA---KGNLK 86
           +    H++ E +   D               +   LA       TA+        + +L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 87  ALKVLLKYNPDLT--------------------------------NIRDSDGYLPVHNAA 114
            +  L++ + +L                                  I +  G  P+  A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 115 YYGHKDTFQYLLEATNG 131
              H+   + L +A +G
Sbjct: 123 RLKHEHCEELLTQALSG 139

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +  +G TA+       N   + +LLK   D  N     GY P             Q L +
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

Query: 128 A 128
            
Sbjct: 200 L 200

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 68  QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           +DN G+  +   A +G+L+ ++ L+K+       R+  G      A  YG  +    +  
Sbjct: 95  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

Query: 128 A 128
            
Sbjct: 155 N 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 100 NIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
           + RD+ G  P+  A   G +D    L  
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQG 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	419
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=319.43  Aligned_cols=335  Identities=16%  Similarity=0.098  Sum_probs=263.9

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      ||..|+.++|+.|+++ |.++|.+ |..| .||||+|| .      .|+.+++++|+++|  ++++.++..|.||||+|+
T Consensus         7 Aa~~g~~~~v~~Ll~~-g~~in~~-d~~g-~TpL~~A~-~------~g~~~iv~~Ll~~g--adi~~~~~~g~t~L~~A~   74 (408)
T d1n11a_           7 ASFMGHLPIVKNLLQR-GASPNVS-NVKV-ETPLHMAA-R------AGHTEVAKYLLQNK--AKVNAKAKDDQTPLHCAA   74 (408)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCSCCS-SSCC-CCHHHHHH-H------HTCHHHHHHHHHHT--CCSSCCCTTSCCHHHHHH
T ss_pred             HHHCcCHHHHHHHHHC-CCCCCCC-CCCC-CCHHHHHH-H------cCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHH
Confidence            6889999999999988 8899999 9999 99999999 9      99999999999999  899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCC--------------------------------CccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q 014730           81 AKGNLKALKVLLKYNPDL--------------------------------TNIRDSDGYLPVHNAAYYGHKDTFQYLLEA  128 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~  128 (419)
                      ..|+.+++++|+..+.+.                                ....+..+.++++.|+..++.+++++|+++
T Consensus        75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~  154 (408)
T d1n11a_          75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  154 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999875542                                344566788999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhccc
Q 014730          129 TNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQ  208 (419)
Q Consensus       129 g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (419)
                      |++++. .+.+|.+||+.|+..|+.+++++|+.+|+++. ..+..|.||++.+.......       ....++.....  
T Consensus       155 ~~~~~~-~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~t~l~~~~~~~~~~-------~~~~l~~~~~~--  223 (408)
T d1n11a_         155 DAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVE-------VARSLLQYGGS--  223 (408)
T ss_dssp             TCCTTC-CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHH-------HHHHHHHTTCC--
T ss_pred             CCCCCc-CCCcCchHHHHHHHcCCHHHHHHHHhcCCccc-ccCCCCCCcchhhhccchhh-------hhhhhhhcccc--
Confidence            999999 99999999999999999999999999999987 78999999999998864321       12222111100  


Q ss_pred             CCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhh--cCchhHHH-
Q 014730          209 SCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMR--LAPSIKVI-  285 (419)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-  285 (419)
                      .                                  .........+.+.++..+....+...........  ...+.+++ 
T Consensus       224 ~----------------------------------~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~  269 (408)
T d1n11a_         224 A----------------------------------NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH  269 (408)
T ss_dssp             T----------------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             c----------------------------------cccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhh
Confidence            0                                  0000011124445555554444443333222221  22233344 


Q ss_pred             HHHhhhhHhHHHHHHHHHhhhhhccccchhh-hhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchH
Q 014730          286 HDQKLTHMRTVEIVRIICEGVVWTNFQKSAQ-LSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRRE  364 (419)
Q Consensus       286 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~  364 (419)
                      .+...++..   +++.+++.+.  +++.... ..||||.|+..++.++++++++. |++++.+|..|+||||+|+++++.
T Consensus       270 ~a~~~~~~~---i~~~Ll~~g~--~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~-g~~in~~d~~G~T~Lh~A~~~g~~  343 (408)
T d1n11a_         270 LVAQEGHVP---VADVLIKHGV--MVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHT  343 (408)
T ss_dssp             HHHHHTCHH---HHHHHHHHTC--CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             hhhhcCcHH---HHHHHHHCCC--ccccccccccccchhhcccCcceeeeeeccc-cccccccCCCCCCHHHHHHHcCCH
Confidence            556666654   4444556554  3332221 18999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          365 KVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       365 ~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      ++|++|+++   +.+++.+|++|+||||+|++.|+.+
T Consensus       344 ~iv~~Ll~~---GAd~n~~d~~G~t~L~~A~~~~~~~  377 (408)
T d1n11a_         344 DIVTLLLKN---GASPNEVSSDGTTPLAIAKRLGYIS  377 (408)
T ss_dssp             HHHHHHHHT---TCCSCCCCSSSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999   6778999999999999999998855

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=257.88  Aligned_cols=53  Identities=9%  Similarity=-0.027  Sum_probs=48.5

Q ss_pred             hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhh
Q 014730          318 SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQG  372 (419)
Q Consensus       318 ~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~  372 (419)
                      .||||.|+..|+.++|++||++ |+|++.+|..|+||||+| ++++.+++++|++
T Consensus       170 ~TpL~~Aa~~g~~~~v~~LL~~-Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         170 NTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CceeccccccCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            6888999999999999999999 999999999999999998 5789999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=276.10  Aligned_cols=309  Identities=16%  Similarity=0.105  Sum_probs=236.6

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .||||+|| .      .|+.++|++|+++|  +++|..|..|.||||+||..|+.+++++|+++|++ ++.++..|.|||
T Consensus         1 ~TpL~~Aa-~------~g~~~~v~~Ll~~g--~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~~~~g~t~L   70 (408)
T d1n11a_           1 LTPLHVAS-F------MGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPL   70 (408)
T ss_dssp             CCHHHHHH-H------HTCHHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHH
T ss_pred             CChHHHHH-H------CcCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHH
Confidence            39999999 9      99999999999999  99999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccc--------------------------------cCCCCCcHHHHHHHcCcHHHHHH
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIY--------------------------------RGNDGAMVLLFLIAANLYDVALD  158 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~--------------------------------~~~~g~t~l~~a~~~~~~~~~~~  158 (419)
                      |+|+..|+.+++++|+..+.+....                                .+..+.++++.|+..++.+++++
T Consensus        71 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~  150 (408)
T d1n11a_          71 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL  150 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHH
Confidence            9999999999999999776543220                                45678899999999999999999


Q ss_pred             HHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcccc
Q 014730          159 LLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTV  238 (419)
Q Consensus       159 Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (419)
                      |++++.++. ..+..|.+||++|+..+.       ....+.++...              .++.                
T Consensus       151 ll~~~~~~~-~~~~~~~~~L~~A~~~~~-------~~~~~~Ll~~g--------------~~~~----------------  192 (408)
T d1n11a_         151 LLERDAHPN-AAGKNGLTPLHVAVHHNN-------LDIVKLLLPRG--------------GSPH----------------  192 (408)
T ss_dssp             HHHTTCCTT-CCCSSCCCHHHHHHHTTC-------HHHHHHHGGGT--------------CCSC----------------
T ss_pred             HHHcCCCCC-cCCCcCchHHHHHHHcCC-------HHHHHHHHhcC--------------Cccc----------------
Confidence            999999887 788999999999998753       22333333221              0000                


Q ss_pred             ccccCCCCCCCCC-ChhhHHHHHhhHHHHHHHHHHHHhh--hcCchhHHH-HHHhhhhHhHHHHHHHHHhhhhhccccch
Q 014730          239 TSKMHPKESTPFG-STQQITAIFGLMFHKLNRMLWNALM--RLAPSIKVI-HDQKLTHMRTVEIVRIICEGVVWTNFQKS  314 (419)
Q Consensus       239 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  314 (419)
                             .....+ .+.+.............++......  ....+.+++ .++..+....   ++.+.+..........
T Consensus       193 -------~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~  262 (408)
T d1n11a_         193 -------SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM---VALLLSKQANGNLGNK  262 (408)
T ss_dssp             -------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH---HHHHHTTTCCTTCCCT
T ss_pred             -------ccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhH---hhhhhccccccccccC
Confidence                   001111 2334333333333333332222221  122233444 5556665544   4444454431122222


Q ss_pred             hhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhc
Q 014730          315 AQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLA  394 (419)
Q Consensus       315 ~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A  394 (419)
                      .+ .||++.|++.++.+++++|+++ |++++..+..+.||||+|+..++.++++++++.   +.+++.+|.+|+||||+|
T Consensus       263 ~g-~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~---g~~in~~d~~G~T~Lh~A  337 (408)
T d1n11a_         263 SG-LTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQA  337 (408)
T ss_dssp             TC-CCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHH
T ss_pred             CC-CChhhhhhhcCcHHHHHHHHHC-CCccccccccccccchhhcccCcceeeeeeccc---cccccccCCCCCCHHHHH
Confidence            23 7999999999999999999999 999999999999999999999999999999999   678899999999999999


Q ss_pred             ccccCCCC
Q 014730          395 GRLVPSSE  402 (419)
Q Consensus       395 ~~~~~~~~  402 (419)
                      |+.|+.+.
T Consensus       338 ~~~g~~~i  345 (408)
T d1n11a_         338 AQQGHTDI  345 (408)
T ss_dssp             HHTTCHHH
T ss_pred             HHcCCHHH
Confidence            99988763

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=247.19  Aligned_cols=207  Identities=19%  Similarity=0.224  Sum_probs=188.0

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .++|+.+| .      .|+.+.|+.++..+ +..++.+|..|+||||+||..|+.+++++|++.+.. ....+..+.+++
T Consensus         4 ~~~~~~~a-~------~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-~~~~~~~~~~~~   74 (223)
T d1uoha_           4 NLMVCNLA-Y------SGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPL   74 (223)
T ss_dssp             SSHHHHHH-H------TTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTCCCHH
T ss_pred             HHHHHHHH-H------hCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc-cccccccccccc
Confidence            78999999 9      99999998888776 578999999999999999999999999999999988 566777899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCC
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFAS  190 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~  190 (419)
                      +.++..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|+++. .++..|                
T Consensus        75 ~~~~~~~~~~i~~~Ll~~~~d~~~-~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-~~~~~~----------------  136 (223)
T d1uoha_          75 HIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYE----------------  136 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTS----------------
T ss_pred             cccccccccchhHHHhccCceeEe-eCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC-CcCCCC----------------
Confidence            999999999999999999999999 99999999999999999999999999988765 232222                


Q ss_pred             CCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHH
Q 014730          191 GSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRM  270 (419)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (419)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (223)
T d1uoha_         137 --------------------------------------------------------------------------------  136 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCC
Q 014730          271 LWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQD  350 (419)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~  350 (419)
                                                                     .||||.|+..|+.+++++|++. +.+++..+..
T Consensus       137 -----------------------------------------------~t~L~~a~~~~~~~~~~~L~~~-~~~i~~~d~~  168 (223)
T d1uoha_         137 -----------------------------------------------ATAMHRAAAKGNLKMIHILLYY-KASTNIQDTE  168 (223)
T ss_dssp             -----------------------------------------------CCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTT
T ss_pred             -----------------------------------------------CccchhhhhcCCcchhhhhccc-cceeeeccCC
Confidence                                                           4577777777888999999999 9999999999


Q ss_pred             CCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcc
Q 014730          351 GHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAG  395 (419)
Q Consensus       351 g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~  395 (419)
                      |+||||+|+.+++.+++++|++.   +.+++.+|.+|+||||+|+
T Consensus       169 g~TpL~~Aa~~g~~~~v~~LL~~---Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         169 GNTPLHLACDEERVEEAKLLVSQ---GASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHCC
T ss_pred             CCceeccccccCcHHHHHHHHHC---CCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999   6788999999999999984

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-34  Score=257.00  Aligned_cols=225  Identities=15%  Similarity=0.109  Sum_probs=169.8

Q ss_pred             cCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCcc---ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCcc
Q 014730           25 IVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQT---LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNI  101 (419)
Q Consensus        25 ~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~  101 (419)
                      ++++| .||||+|| .      .|+.+++++|++.|  ++   ++.+|..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus         5 i~~~G-~t~Lh~A~-~------~~~~~~v~~Ll~~~--a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~   73 (255)
T d1oy3d_           5 VTEDG-DTALHLAV-I------HQHEPFLDFLLGFS--AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLV   73 (255)
T ss_dssp             CCTTC-CCHHHHHH-H------TTCHHHHHHHHHHH--TTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSC
T ss_pred             CCcCC-CCHHHHHH-H------cCCHHHHHHHHHcC--CCcccccCcCCCCCCccchHHhhccccccccccccccc-ccc
Confidence            38999 99999999 9      99999999999998  54   778889999999999999999999999999999 799


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccc---------cCCCCCcHHHHHHH---cCcH-HHHHHHHhhCCCCCc
Q 014730          102 RDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY---------RGNDGAMVLLFLIA---ANLY-DVALDLLKLHPTIGR  168 (419)
Q Consensus       102 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~---------~~~~g~t~l~~a~~---~~~~-~~~~~Ll~~~~~~~~  168 (419)
                      +|.+|.||||+|+..++.+++++|++.+......         ....+.+....+..   .... .........+..+. 
T Consensus        74 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in-  152 (255)
T d1oy3d_          74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-  152 (255)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTT-
T ss_pred             cccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccc-
Confidence            9999999999999999999999999887643321         00011111111111   1111 11111222344444 


Q ss_pred             CCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCC
Q 014730          169 DNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKEST  248 (419)
Q Consensus       169 ~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (419)
                      .+|..|.||||+|+..+..                                                             
T Consensus       153 ~~d~~g~TpLh~A~~~~~~-------------------------------------------------------------  171 (255)
T d1oy3d_         153 AENYDGHTPLHVAVIHKDA-------------------------------------------------------------  171 (255)
T ss_dssp             CCCTTSCCHHHHHHHTTCH-------------------------------------------------------------
T ss_pred             cccccCccccccccccccc-------------------------------------------------------------
Confidence            7899999999999986421                                                             


Q ss_pred             CCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhcccc---chhhhhHHHHHHH
Q 014730          249 PFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQ---KSAQLSGAMLSAA  325 (419)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~t~L~~A~  325 (419)
                                                                      ++++.|++...  ..+   ...+ .||||+|+
T Consensus       172 ------------------------------------------------~~v~~Ll~~~~--~~~~~~~~~g-~TpL~~A~  200 (255)
T d1oy3d_         172 ------------------------------------------------EMVRLLRDAGA--DLNKPEPTCG-RTPLHLAV  200 (255)
T ss_dssp             ------------------------------------------------HHHHHHHHHTC--CTTCCCTTTC-CCHHHHHH
T ss_pred             ------------------------------------------------ccccchhcccc--cccccccccc-cccccccc
Confidence                                                            22333333332  221   2223 89999999


Q ss_pred             HhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          326 ILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       326 ~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      +.|+.++|++|+++ |++++.++..|+||||+|+.+++.+++++|+++|
T Consensus       201 ~~~~~~~v~~Ll~~-gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         201 EAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (255)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999 9999999999999999999999999999999996

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.7e-33  Score=256.08  Aligned_cols=234  Identities=18%  Similarity=0.201  Sum_probs=190.6

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .|+|+.|| .      .|+.++|++|+++|  +++|.+|.+|.||||+|+..|+.+++++|++++++ ....+..+.|||
T Consensus        41 ~t~l~~A~-~------~G~~~~v~~Ll~~G--advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L  110 (291)
T d1s70b_          41 GAVFLAAC-S------SGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPL  110 (291)
T ss_dssp             HHHHHHHH-H------HTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             chHHHHHH-H------cCCHHHHHHHHHCC--CCCCccCCCCCcHHHHHHhcCCceeeeeecccccc-cccccccccccc
Confidence            59999999 9      99999999999999  99999999999999999999999999999999998 688888999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCC
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFAS  190 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~  190 (419)
                      +.++..++.+++++|+++|+..+. .+..+.+|+++|+..+..++++.++.......          . .....      
T Consensus       111 ~~a~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~----------~-~~~~~------  172 (291)
T d1s70b_         111 HAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI----------E-AARKE------  172 (291)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH----------H-HHHHH------
T ss_pred             cccccccccchhhcccccCccccc-ccccCccccccccccccchhcccccccccccc----------c-ccccc------
Confidence            999999999999999999998888 89999999999999999999999987643211          0 00000      


Q ss_pred             CCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHH
Q 014730          191 GSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRM  270 (419)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (419)
                            .... .                                                                    
T Consensus       173 ------~~~~-~--------------------------------------------------------------------  177 (291)
T d1s70b_         173 ------EERI-M--------------------------------------------------------------------  177 (291)
T ss_dssp             ------HHHH-H--------------------------------------------------------------------
T ss_pred             ------cccc-c--------------------------------------------------------------------
Confidence                  0000 0                                                                    


Q ss_pred             HHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCC
Q 014730          271 LWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQD  350 (419)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~  350 (419)
                                           .......+.  .....  .........||||.|+..|+.+++++|++. |+|++.++..
T Consensus       178 ---------------------~~~~~~~~~--~~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~din~~~~~  231 (291)
T d1s70b_         178 ---------------------LRDARQWLN--SGHIN--DVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYD  231 (291)
T ss_dssp             ---------------------HHHHHHHHH--HTCCC--CCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTT
T ss_pred             ---------------------cccchhhhc--ccccc--cccccCCCCChhhHHHHcCChhhhcccccc-eecccccccC
Confidence                                 000000000  00000  111111117999999999999999999999 9999999999


Q ss_pred             CCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhccc
Q 014730          351 GHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGR  396 (419)
Q Consensus       351 g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~  396 (419)
                      |+||||+|+..|+.++|++|+++   +.+++.+|..|+||||+|++
T Consensus       232 g~TpL~~A~~~g~~~iv~lLl~~---Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         232 GWTPLHAAAHWGKEEACRILVEN---LCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999   66789999999999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2e-34  Score=261.41  Aligned_cols=256  Identities=14%  Similarity=0.095  Sum_probs=195.7

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccC-CCCChHHHHHHHcCCHHHHHHH--------HhcCCCCCcc
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD-NHGHTAVIFCAAKGNLKALKVL--------LKYNPDLTNI  101 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~L--------l~~~~~~~~~  101 (419)
                      .||||++++.      .|..++++.|.+.+    +|..+ .+|.||||+||..|+.+++++|        ++.|++ ++.
T Consensus         1 ~~p~~~~~~~------~~~~~~~~~l~~~~----~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-vn~   69 (277)
T d2fo1e1           1 ESPIKLHTEA------AGSYAITEPITRES----VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNA   69 (277)
T ss_dssp             CCCCHHHHHH------HSSSCCCSCCSTTT----TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTC
T ss_pred             CChHHHHHHh------CCCHHHHHHHHhcC----CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-ccc
Confidence            4899988856      78888888888776    44455 4699999999999999988776        566888 899


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCC---CCCcCCCCCCCcHH
Q 014730          102 RDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHP---TIGRDNIDSRRIVL  178 (419)
Q Consensus       102 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~~~~g~~~l  178 (419)
                      +|..|.||||+|+..|+.+++++|+++|++++. .+..|.||++.|...++.++++++...+.   .+. ..+..+.++.
T Consensus        70 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~-~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~  147 (277)
T d2fo1e1          70 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTAL  147 (277)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHH
T ss_pred             cCCCCCeeecccccccccccccccccccccccc-ccccccccccchhhhcchhhhhhhhhccccccccc-ccccccchhH
Confidence            999999999999999999999999999999999 99999999999999999999999987542   333 5677888888


Q ss_pred             HHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHH
Q 014730          179 NTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITA  258 (419)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (419)
                      +.+........    ...........  ....                                                
T Consensus       148 ~~~~~~~~~~~----~~~~~~~~~~~--~~~~------------------------------------------------  173 (277)
T d2fo1e1         148 MIVAHNEGRDQ----VASAKLLVEKG--AKVD------------------------------------------------  173 (277)
T ss_dssp             HHHHHSCSTTH----HHHHHHHHHHT--CCSS------------------------------------------------
T ss_pred             HHHHhcccccc----ccccccccccc--cccc------------------------------------------------
Confidence            88876532110    00000000000  0000                                                


Q ss_pred             HHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHH
Q 014730          259 IFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIM  338 (419)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~  338 (419)
                                          ..                      .....  +.....+ .||||.++..++.+++++++.
T Consensus       174 --------------------~~----------------------~~~~~--~~~~~~g-~t~L~~~~~~~~~~~~~~~l~  208 (277)
T d2fo1e1         174 --------------------YD----------------------GAARK--DSEKYKG-RTALHYAAQVSNMPIVKYLVG  208 (277)
T ss_dssp             --------------------CC----------------------SGGGT--SSSSCCC-CCTHHHHHSSCCHHHHHHHHH
T ss_pred             --------------------cc----------------------ccccc--cccccCC-CCccccccccccccccccccc
Confidence                                00                      00000  1111122 789999999999999998776


Q ss_pred             hcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          339 AYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       339 ~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      ..+.+.+..+..|+||||+|+++++.+++++|+++   +.+++.+|.+|+||||+|++.|+.+
T Consensus       209 ~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~---gadin~~d~~G~T~L~~A~~~~~~~  268 (277)
T d2fo1e1         209 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHN  268 (277)
T ss_dssp             HSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             cccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            65778888889999999999999999999999998   5678899999999999999998754

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-31  Score=243.27  Aligned_cols=262  Identities=17%  Similarity=0.154  Sum_probs=211.1

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      ||++||.++|+.|+++ |.++|.+.+..| .||||+|+ .      .|+.+++++|++.+  ...+..+..+.+|.+.|+
T Consensus        12 Ai~~~~~e~vk~Ll~~-G~din~~~~~~g-~tpL~~A~-~------~~~~eiv~~L~~~~--~~~~~~~~~~~~~~~~~~   80 (285)
T d1wdya_          12 AVQNEDVDLVQQLLEG-GANVNFQEEEGG-WTPLHNAV-Q------MSREDIVELLLRHG--ADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCTTTC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHC-CCCcCccCCCCC-CCHHHHHH-H------cCCHHHhhhhcccc--ccccccccccchhhHHHh
Confidence            6788999999999987 788888744567 99999999 9      99999999999998  777888888899999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccc---------cCCCCCcHHHHHHHcC
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY---------RGNDGAMVLLFLIAAN  151 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~---------~~~~g~t~l~~a~~~~  151 (419)
                      ..+..+...+++++..+ ....+..+.|+++.|+..|+...++.+++...+.+..         ....|.||||.|+..|
T Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             hcCCccccchhhhhccc-ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcC
Confidence            99999999999988776 4666778899999999999999999888887665542         3456889999999999


Q ss_pred             cHHHHHHHHhh-CCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCC
Q 014730          152 LYDVALDLLKL-HPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVD  230 (419)
Q Consensus       152 ~~~~~~~Ll~~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (419)
                      +.+++++|++. |+++. ..+..|.+++..+.......                                          
T Consensus       160 ~~~~~~~Ll~~~~~~i~-~~~~~~~~~~~~~~~~~~~~------------------------------------------  196 (285)
T d1wdya_         160 HVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDS------------------------------------------  196 (285)
T ss_dssp             CHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTT------------------------------------------
T ss_pred             CHHHHHHHHhccCCCcc-cccCCCCcccccccccccch------------------------------------------
Confidence            99999999876 56665 77788888777655431100                                          


Q ss_pred             CCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhcc
Q 014730          231 GDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTN  310 (419)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  310 (419)
                                                                                     ....+++.|++.+.  +
T Consensus       197 ---------------------------------------------------------------~~~~i~~~Li~~ga--~  211 (285)
T d1wdya_         197 ---------------------------------------------------------------DVEAITHLLLDHGA--D  211 (285)
T ss_dssp             ---------------------------------------------------------------THHHHHHHHHHTTC--C
T ss_pred             ---------------------------------------------------------------HHHHHHHHHHHCCC--C
Confidence                                                                           01244555566655  4


Q ss_pred             ccchhhh-hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccC
Q 014730          311 FQKSAQL-SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDK  385 (419)
Q Consensus       311 ~~~~~~~-~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~  385 (419)
                      ++..+.. .||||.|+..|+.++|++||+.+|++++.+|..|+||||+|+++++.+++++|+++   ++++|+.|.
T Consensus       212 ~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~---GAd~n~~d~  284 (285)
T d1wdya_         212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDCGDL  284 (285)
T ss_dssp             SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SSCSCCSSC
T ss_pred             CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCcccC
Confidence            4432221 89999999999999999999865899999999999999999999999999999999   667777663

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-33  Score=247.75  Aligned_cols=232  Identities=19%  Similarity=0.073  Sum_probs=167.7

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCC--CCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHH
Q 014730           68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPD--LTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLL  145 (419)
Q Consensus        68 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~  145 (419)
                      .+.+|.||||+||+.|+.+++++|+++|++  .++.++..|.||||+|+..|+.+++++|+++|++++. .+.+|.||||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~-~d~~g~tpL~   83 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTALH   83 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCCHHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccc-cccccchhhh
Confidence            568899999999999999999999999765  3457788999999999999999999999999999999 9999999999


Q ss_pred             HHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCC
Q 014730          146 FLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSND  225 (419)
Q Consensus       146 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (419)
                      +|+..++.+++++|++.+....    .......................     .+...                     
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------------  133 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHP----RDASDTYLTQSQDCTPDTSHAPA-----AVDSQ---------------------  133 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSC----CCC---------------------------------------------------
T ss_pred             hhhccCchHHHHHHHhhccchh----cccchhhhhHHhhhcccchHHHH-----HHHhh---------------------
Confidence            9999999999999998764332    11111100000000000000000     00000                     


Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhh
Q 014730          226 DQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEG  305 (419)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  305 (419)
                                                                                      ...  ...........
T Consensus       134 ----------------------------------------------------------------~~~--~~~~~~~~~~~  147 (255)
T d1oy3d_         134 ----------------------------------------------------------------PNP--ENEEEPRDEDW  147 (255)
T ss_dssp             ----------------------------------------------------------------------------CCCG
T ss_pred             ----------------------------------------------------------------cch--hHHHHHHhhhc
Confidence                                                                            000  00000000001


Q ss_pred             hhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCcccccc-CCCCchHHHHHhhchHHHHHHHhhcccccceeeecc
Q 014730          306 VVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSN-QDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRD  384 (419)
Q Consensus       306 ~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~-~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D  384 (419)
                      ....+.....+ .||||+||++|+.++|++|++. +++.+..+ ..|+||||+|++.++.+++++|+++   +.+++.+|
T Consensus       148 ~~~in~~d~~g-~TpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~---gadin~~d  222 (255)
T d1oy3d_         148 RLQLEAENYDG-HTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARM  222 (255)
T ss_dssp             GGGTTCCCTTS-CCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCC
T ss_pred             CcccccccccC-cccccccccccccccccchhcc-cccccccccccccccccccccccHHHHHHHHHHC---CCCCCCCC
Confidence            11001112222 8999999999999999999999 99988766 8899999999999999999999999   57789999


Q ss_pred             CCCCccchhcccccCCC
Q 014730          385 KSGNNILHLAGRLVPSS  401 (419)
Q Consensus       385 ~~G~t~Lh~A~~~~~~~  401 (419)
                      ..|+||||+|++.|+..
T Consensus       223 ~~g~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         223 YGGRTPLGSALLRPNPI  239 (255)
T ss_dssp             TTSCCHHHHHHTSSCHH
T ss_pred             CCCCCHHHHHHHCCCHH
Confidence            99999999999998866

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.6e-32  Score=236.82  Aligned_cols=128  Identities=17%  Similarity=0.282  Sum_probs=104.1

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCc---cCCCCCc
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTN---IRDSDGY  107 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~---~~~~~g~  107 (419)
                      .+|||+|| .      .|+.+.++.|++.+ +..++.+|.+|.||||+|+..|+.+++++|+++|++ ++   ..+..|.
T Consensus         1 n~pLh~A~-~------~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~   71 (229)
T d1ixva_           1 NYPLHQAC-M------ENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN-VNLDDYPDDSGW   71 (229)
T ss_dssp             CCHHHHHH-H------HTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTT-CCGGGCCCTTSC
T ss_pred             CHhHHHHH-H------cCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcc-cccccccccccc
Confidence            47899999 8      88888888888876 467888888899999999999999999999988877 44   3456788


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccc-cCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCC
Q 014730          108 LPVHNAAYYGHKDTFQYLLEATNGVDIY-RGNDGAMVLLFLIAANLYDVALDLLKLHPTIG  167 (419)
Q Consensus       108 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  167 (419)
                      +|+|+++..+..++++.++..+...+.. .+..+.|+++.++..++.+++++|+..+....
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  132 (229)
T d1ixva_          72 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR  132 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence            8899888888888888888888765443 56678888888888888888888888876654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-30  Score=228.32  Aligned_cols=216  Identities=17%  Similarity=0.141  Sum_probs=189.0

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCcccc---ccCCCCChHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLA---RQDNHGHTAVI   77 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~---~~~~~g~t~L~   77 (419)
                      ||+.|+.+.|+.|++..+.+++.+ |.+| .||||+|+ .      .|+.+++++|++.|  ++++   ..+..|.+|+|
T Consensus         7 A~~~g~~~~v~~Ll~~~~~~~~~~-d~~G-~TpL~~A~-~------~g~~~iv~~Ll~~g--a~~~~~~~~~~~~~~~~~   75 (229)
T d1ixva_           7 ACMENEFFKVQELLHSKPSLLLQK-DQDG-RIPLHWSV-S------FQAHEITSFLLSKM--ENVNLDDYPDDSGWTPFH   75 (229)
T ss_dssp             HHHHTCHHHHHHHHHHCGGGTTCC-CTTS-CCHHHHHH-H------TTCHHHHHHHHTTC--TTCCGGGCCCTTSCCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccc-CCCC-CCHHHHHH-H------cCCccccchhhhhh--cccccccccccccccccc
Confidence            688999999999999989999999 9999 99999999 9      99999999999999  6665   46778999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCC-CccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHH
Q 014730           78 FCAAKGNLKALKVLLKYNPDL-TNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVA  156 (419)
Q Consensus        78 ~A~~~g~~~~~~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~  156 (419)
                      +++..+..++++.++..+... ....+..+.||++.++..++.+++++|++.|.+.+. .+..|+||||+|+..|+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          76 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             HHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc-cCCCCCCccchhhhccccccc
Confidence            999999999999999987642 344566789999999999999999999999999988 999999999999999999999


Q ss_pred             HHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCcc
Q 014730          157 LDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENF  236 (419)
Q Consensus       157 ~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (419)
                      ++|++.+....+.+|..|                                                              
T Consensus       155 ~~Ll~~~~~~in~~d~~g--------------------------------------------------------------  172 (229)
T d1ixva_         155 ELLCGLGKSAVNWQDKQG--------------------------------------------------------------  172 (229)
T ss_dssp             HHHHTTTCCCSCCCCTTS--------------------------------------------------------------
T ss_pred             cccccccccccccccccc--------------------------------------------------------------
Confidence            999988753321222222                                                              


Q ss_pred             ccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhh
Q 014730          237 TVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQ  316 (419)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  316 (419)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (229)
T d1ixva_         173 --------------------------------------------------------------------------------  172 (229)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          317 LSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       317 ~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                       .||||+|+..|+.++|++||+++|+|++.+|..|+||||+|+..   +++++|+++|
T Consensus       173 -~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~---~~~~~Ll~~g  226 (229)
T d1ixva_         173 -WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNV  226 (229)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH---HHHHHHHHHC
T ss_pred             -CCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH---HHHHHHHHcC
Confidence             57888888888999999999755999999999999999999954   6999999984

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.8e-31  Score=240.49  Aligned_cols=243  Identities=16%  Similarity=0.151  Sum_probs=183.5

Q ss_pred             CChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHH--------HhhCCCccccccCCCCChHH
Q 014730            5 NDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKL--------ATKVDPQTLARQDNHGHTAV   76 (419)
Q Consensus         5 g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~L--------l~~~~~~~~~~~~~~g~t~L   76 (419)
                      |+.++++.|.+. +.  |..-+++| .||||+|| .      .|+.++|+.|        ++.|  +++|.+|..|.|||
T Consensus        12 ~~~~~~~~l~~~-~~--n~~~~~~g-~T~Lh~A~-~------~g~~~~v~~Ll~~~~~~~l~~G--advn~~d~~G~TpL   78 (277)
T d2fo1e1          12 GSYAITEPITRE-SV--NIIDPRHN-RTVLHWIA-S------NSSAEKSEDLIVHEAKECIAAG--ADVNAMDCDENTPL   78 (277)
T ss_dssp             SSSCCCSCCSTT-TT--TTCCCSSC-CCHHHHHH-C------TTCCSCCTTHHHHHHHHHHHTC--CCTTCCCTTSCCHH
T ss_pred             CCHHHHHHHHhc-CC--CcCCCCCC-ccHHHHHH-H------cCCHHHHHHHHhcchhHHHHcC--CCccccCCCCCeee
Confidence            444444444443 43  33413568 99999999 9      9999988776        5667  89999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCC---CCccccCCCCCcHHHHHHHcCc-
Q 014730           77 IFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN---GVDIYRGNDGAMVLLFLIAANL-  152 (419)
Q Consensus        77 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~---~~~~~~~~~g~t~l~~a~~~~~-  152 (419)
                      |+|+..|+.+++++|+++|++ ++.++..|.|||+.|+..++.++++++...+.   .++. .+..+.++.+.+...+. 
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  156 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVAHNEGR  156 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC-CCTTSCCHHHHHHHSCST
T ss_pred             ccccccccccccccccccccc-cccccccccccccchhhhcchhhhhhhhhcccccccccc-cccccchhHHHHHhcccc
Confidence            999999999999999999999 89999999999999999999999999887642   4455 67888999999888764 


Q ss_pred             --HHHHHHHHhhCCCC-------CcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCccccccccccc
Q 014730          153 --YDVALDLLKLHPTI-------GRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQS  223 (419)
Q Consensus       153 --~~~~~~Ll~~~~~~-------~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (419)
                        ...+..+.......       ....+..|.|||++++..+...                                   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~-----------------------------------  201 (277)
T d2fo1e1         157 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMP-----------------------------------  201 (277)
T ss_dssp             THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHH-----------------------------------
T ss_pred             cccccccccccccccccccccccccccccCCCCcccccccccccc-----------------------------------
Confidence              33444454443211       1135567888888887653210                                   


Q ss_pred             CCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHH-H
Q 014730          224 NDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRI-I  302 (419)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l  302 (419)
                                                                                                .+.. +
T Consensus       202 --------------------------------------------------------------------------~~~~~l  207 (277)
T d2fo1e1         202 --------------------------------------------------------------------------IVKYLV  207 (277)
T ss_dssp             --------------------------------------------------------------------------HHHHHH
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      0110 0


Q ss_pred             HhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          303 CEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       303 ~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                      .............+ .||||+|++.|+.++|++|+++ |+|++.+|..|+||||+|+++++.++|++|.+-
T Consensus       208 ~~~~~~~~~~d~~g-~tpL~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         208 GEKGSNKDKQDEDG-KTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHSCCCTTCCCTTC-CCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             ccccccccccCCCC-CCHHHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            11111001112222 8999999999999999999999 999999999999999999999999999999863

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=230.63  Aligned_cols=246  Identities=15%  Similarity=0.140  Sum_probs=199.4

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD-NHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLP  109 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~  109 (419)
                      .|+||.|+ .      .|++++|++|+++|  +++|.++ ..|.||||+|+..|+.+++++|++.+.. ....+..+.+|
T Consensus         6 ~~~L~~Ai-~------~~~~e~vk~Ll~~G--~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~-~~~~~~~~~~~   75 (285)
T d1wdya_           6 NHLLIKAV-Q------NEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             cHHHHHHH-H------cCCHHHHHHHHHCC--CCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc-ccccccccchh
Confidence            79999999 9      99999999999999  8898765 4799999999999999999999999998 67888899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCc---------CCCCCCCcHHHH
Q 014730          110 VHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGR---------DNIDSRRIVLNT  180 (419)
Q Consensus       110 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~---------~~~~~g~~~l~~  180 (419)
                      .+.++..+..+...++++...+... .+..+.++++.|+..++..+++.++....+...         ..+..|.||||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T d1wdya_          76 FLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             hHHHhhcCCccccchhhhhcccccc-cccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHH
Confidence            9999999999999999999877766 788999999999999999999999987654321         144557788888


Q ss_pred             HHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHH
Q 014730          181 LSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIF  260 (419)
Q Consensus       181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (419)
                      |+..+..                                                                         
T Consensus       155 A~~~~~~-------------------------------------------------------------------------  161 (285)
T d1wdya_         155 AAEKGHV-------------------------------------------------------------------------  161 (285)
T ss_dssp             HHHHTCH-------------------------------------------------------------------------
T ss_pred             HHHcCCH-------------------------------------------------------------------------
Confidence            8775321                                                                         


Q ss_pred             hhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhh-hhhccccchhhh-----hHHHHHHHHhChHHHHH
Q 014730          261 GLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEG-VVWTNFQKSAQL-----SGAMLSAAILGIPEVVN  334 (419)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~-----~t~L~~A~~~g~~e~v~  334 (419)
                                                          +.++.|++. ..  +++..+..     ..++..+...+..++++
T Consensus       162 ------------------------------------~~~~~Ll~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~  203 (285)
T d1wdya_         162 ------------------------------------EVLKILLDEMGA--DVNACDNMGRNALIHALLSSDDSDVEAITH  203 (285)
T ss_dssp             ------------------------------------HHHHHHHHTSCC--CTTCCCTTSCCHHHHHHHCSCTTTHHHHHH
T ss_pred             ------------------------------------HHHHHHHhccCC--CcccccCCCCcccccccccccchHHHHHHH
Confidence                                                112222222 11  11111111     22223334445678999


Q ss_pred             HHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          335 EFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       335 ~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      +|+++ |++++.++..|+||||+|++.++.+++++|++.  .+.+++.+|.+|+||||+|++.|+.+
T Consensus       204 ~Li~~-ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~--~g~din~~d~~G~TpL~~A~~~~~~e  267 (285)
T d1wdya_         204 LLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             HHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS--SSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHC-CCCCCccCCCCCCccchhhhcCcHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            99999 999999999999999999999999999999987  57789999999999999999999866

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=228.03  Aligned_cols=192  Identities=15%  Similarity=0.178  Sum_probs=161.5

Q ss_pred             CCCccHHHHHHHhhcccCCCchH----HHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC
Q 014730           28 PGSKTIFHTIAELLVDDDSDEAT----CLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRD  103 (419)
Q Consensus        28 ~g~~t~L~~A~~~~~~~~~~g~~----~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~  103 (419)
                      +| .||||+|+ .      .|+.    ++++++...+  .++|.+|..|.||||+||..|+.+++++|+++|++ ++.++
T Consensus         1 dG-~t~Lh~A~-~------~g~~~~~~~li~~~~~~~--~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-~~~~d   69 (221)
T d1iknd_           1 DG-DSFLHLAI-I------HEEKALTMEVIRQVKGDL--AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRD   69 (221)
T ss_dssp             CC-CCTTHHHH-H------TTCSSSSSCCCC-----C--CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCC
T ss_pred             CC-ChHHHHHH-H------cCCHHHHHHHHHHHHhCC--CCcccCCCCCCcccccccccccccccccccccccc-ccccc
Confidence            47 99999999 8      8885    4566666777  88999999999999999999999999999999999 78999


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccc-----cCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHH
Q 014730          104 SDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY-----RGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVL  178 (419)
Q Consensus       104 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-----~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l  178 (419)
                      ..|.|||+.++..|+.++++.|++.+......     ....|.||||.|+..++.+++++|+..|+......+.      
T Consensus        70 ~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~------  143 (221)
T d1iknd_          70 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC------  143 (221)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT------
T ss_pred             cccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccccc------
Confidence            99999999999999999999999987654332     4456889999999999999999999888765411111      


Q ss_pred             HHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHH
Q 014730          179 NTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITA  258 (419)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (419)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (221)
T d1iknd_         144 --------------------------------------------------------------------------------  143 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHH
Q 014730          259 IFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIM  338 (419)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~  338 (419)
                                                                              .+ .||||.|++.|+.++|++|++
T Consensus       144 --------------------------------------------------------~G-~T~L~~A~~~g~~~~v~~Ll~  166 (221)
T d1iknd_         144 --------------------------------------------------------NG-RTALHLAVDLQNPDLVSLLLK  166 (221)
T ss_dssp             --------------------------------------------------------TC-CCHHHHHHHTTCHHHHHHHHT
T ss_pred             --------------------------------------------------------CC-CCccccccccccHHHHHHHHh
Confidence                                                                    11 678999999999999999999


Q ss_pred             hcCCccccccCCCCchHHHHHhhchHHHHHHHhhcc
Q 014730          339 AYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVN  374 (419)
Q Consensus       339 ~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~  374 (419)
                      . |+|++.++..|+||||+|+++++.+++++|.+..
T Consensus       167 ~-gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         167 C-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             T-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             c-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9 9999999999999999999999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-29  Score=217.57  Aligned_cols=78  Identities=10%  Similarity=-0.027  Sum_probs=63.7

Q ss_pred             hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcccc
Q 014730          318 SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAGRL  397 (419)
Q Consensus       318 ~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~~~  397 (419)
                      .+|++.|+..+..++++++++. +.+++..+..|.||||+|+.+++.+++++|+++   +.+++.+|.+|+||||+|++.
T Consensus       145 ~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         145 RSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSH
T ss_pred             hhHHHHHHHhhhhhhhhhhhhh-ccccccccccCcchHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhC
Confidence            5688888888888888888888 888888888888888888888888888888887   456778888888888888877


Q ss_pred             cC
Q 014730          398 VP  399 (419)
Q Consensus       398 ~~  399 (419)
                      |.
T Consensus       221 ~~  222 (228)
T d1k1aa_         221 RV  222 (228)
T ss_dssp             HH
T ss_pred             CC
Confidence            65

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.1e-29  Score=231.75  Aligned_cols=234  Identities=16%  Similarity=0.171  Sum_probs=176.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      ||+.|+.+.|+.||++ |.++|.+ |.+| .||||+|+ .      .|+.++|++|+++|  .+.+..+..+.+||+.|+
T Consensus        47 A~~~G~~~~v~~Ll~~-Gadvn~~-d~~G-~T~L~~A~-~------~g~~eiv~~Ll~~~--~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          47 ACSSGDTEEVLRLLER-GADINYA-NVDG-LTALHQAC-I------DDNVDMVKFLVENG--ANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             HHHHTCHHHHHHHHHH-CCCTTCB-CTTC-CBHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCcc-CCCC-CcHHHHHH-h------cCCceeeeeecccc--cccccccccccccccccc
Confidence            6789999999999988 8899999 9999 99999999 9      99999999999999  788888999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCccccCCCCCcHHHHHHHcCcHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEAT-NGVDIYRGNDGAMVLLFLIAANLYDVALDL  159 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  159 (419)
                      ..++.++++.|++++.. .+..+..+.+|+++|+..+..+.++.++... .+... ....+..+       ........+
T Consensus       115 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~-------~~~~~~~~~  185 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-ARKEEERI-------MLRDARQWL  185 (291)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHH-HHHHHHHH-------HHHHHHHHH
T ss_pred             cccccchhhcccccCcc-cccccccCccccccccccccchhcccccccccccccc-cccccccc-------ccccchhhh
Confidence            99999999999999988 7888999999999999999999999988653 32221 11111001       111222222


Q ss_pred             HhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccc
Q 014730          160 LKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVT  239 (419)
Q Consensus       160 l~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (419)
                      ........ ..+..|.|||+.++..+.                                                     
T Consensus       186 ~~~~~~~~-~~~~~g~t~L~~a~~~~~-----------------------------------------------------  211 (291)
T d1s70b_         186 NSGHINDV-RHAKSGGTALHVAAAKGY-----------------------------------------------------  211 (291)
T ss_dssp             HHTCCCCC-CCTTTCCCHHHHHHHHTC-----------------------------------------------------
T ss_pred             cccccccc-cccCCCCChhhHHHHcCC-----------------------------------------------------
Confidence            22222222 456667777776665421                                                     


Q ss_pred             cccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhcccc--chhhh
Q 014730          240 SKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQ--KSAQL  317 (419)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~  317 (419)
                                                                              .++++.+++.+.  +++  ...+ 
T Consensus       212 --------------------------------------------------------~~~~~~Ll~~g~--din~~~~~g-  232 (291)
T d1s70b_         212 --------------------------------------------------------TEVLKLLIQARY--DVNIKDYDG-  232 (291)
T ss_dssp             --------------------------------------------------------HHHHHHHHTTTC--CTTCCCTTC-
T ss_pred             --------------------------------------------------------hhhhccccccee--cccccccCC-
Confidence                                                                    122222333332  222  2222 


Q ss_pred             hHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhc
Q 014730          318 SGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGV  373 (419)
Q Consensus       318 ~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~  373 (419)
                      .||||+|+..|+.++|++||++ |+|++.+|..|+||||+|++    +++++|.+.
T Consensus       233 ~TpL~~A~~~g~~~iv~lLl~~-Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         233 WTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            7899999999999999999999 99999999999999999986    466666655

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.4e-28  Score=210.74  Aligned_cols=207  Identities=20%  Similarity=0.186  Sum_probs=174.3

Q ss_pred             hHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHH
Q 014730            7 WPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLK   86 (419)
Q Consensus         7 ~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~   86 (419)
                      .|+|+.|+++ |.++|.+.|.+| .||||+|| .      .|+.+++++|++.|  ..++.++..+.++++.++..++..
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G-~t~L~~A~-~------~g~~e~v~~Ll~~g--~~~n~~~~~~~~~~~~~~~~~~~~   70 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTG-ETSLHLAA-R------FARADAAKRLLDAG--ADANSQDNTGRTPLHAAVAADAMG   70 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCC-CCHHHHHH-H------cCCHHHHHHHHhhc--cccccccccccccccccccccccc
Confidence            4788899987 778887547889 99999999 8      89999999999998  888888889999999999888888


Q ss_pred             HHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCC
Q 014730           87 ALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTI  166 (419)
Q Consensus        87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  166 (419)
                      ...................+.++.+.+.........+.|.+.+++++. .+..|.|||+.++..+..++++.++..+.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~  149 (209)
T d1ot8a_          71 VFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA-ADNSGKTALHWAAAVNNTEAVNILLMHHANR  149 (209)
T ss_dssp             HHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhcccccc-cCCCCCCcchhhcccCcceeeeeeccccccc
Confidence            777776665543455566788888888888888888889999888888 8888899999999999999998888887654


Q ss_pred             CcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCC
Q 014730          167 GRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKE  246 (419)
Q Consensus       167 ~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (419)
                      . ..|..                                                                         
T Consensus       150 ~-~~d~~-------------------------------------------------------------------------  155 (209)
T d1ot8a_         150 D-AQDDK-------------------------------------------------------------------------  155 (209)
T ss_dssp             T-CCCTT-------------------------------------------------------------------------
T ss_pred             c-ccccc-------------------------------------------------------------------------
Confidence            4 22111                                                                         


Q ss_pred             CCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHH
Q 014730          247 STPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAI  326 (419)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~  326 (419)
                                                                                           + .||||.|+.
T Consensus       156 ---------------------------------------------------------------------g-~TpL~~A~~  165 (209)
T d1ot8a_         156 ---------------------------------------------------------------------D-ETPLFLAAR  165 (209)
T ss_dssp             ---------------------------------------------------------------------C-CCHHHHHHH
T ss_pred             ---------------------------------------------------------------------c-ccccchhcc
Confidence                                                                                 1 578888899


Q ss_pred             hChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHH
Q 014730          327 LGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLI  370 (419)
Q Consensus       327 ~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L  370 (419)
                      .|+.++|++||+. |+|++.+|..|+||||+|+++++.++|++|
T Consensus       166 ~g~~~~v~~Ll~~-gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         166 EGSYEASKALLDN-FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999 999999999999999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-29  Score=218.29  Aligned_cols=187  Identities=13%  Similarity=0.063  Sum_probs=156.8

Q ss_pred             CCChHHHHHHHcCCHHH----HHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 014730           71 HGHTAVIFCAAKGNLKA----LKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLF  146 (419)
Q Consensus        71 ~g~t~L~~A~~~g~~~~----~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~  146 (419)
                      +|.||||+|+..|+.++    ++++...+++ ++.+|..|.||||+|+..|+.+++++|++.|++++. .+..|.|||+.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~-~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCccccccccccccccccccccccccccc-ccccccccccc
Confidence            58999999999998654    5556667877 799999999999999999999999999999999999 99999999999


Q ss_pred             HHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCC
Q 014730          147 LIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDD  226 (419)
Q Consensus       147 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (419)
                      ++..+..++++.|+..+.......                ..                                      
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~----------------~~--------------------------------------  104 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHS----------------IL--------------------------------------  104 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSC----------------GG--------------------------------------
T ss_pred             ccccccccccchhhhhcccccccc----------------cc--------------------------------------
Confidence            999999999999998765432000                00                                      


Q ss_pred             CCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhh
Q 014730          227 QNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGV  306 (419)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  306 (419)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (221)
T d1iknd_         105 --------------------------------------------------------------------------------  104 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCcccccc-CCCCchHHHHHhhchHHHHHHHhhcccccceeeeccC
Q 014730          307 VWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSN-QDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDK  385 (419)
Q Consensus       307 ~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~-~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~  385 (419)
                         ......+ .||||.|+..|+.+++++|+.. +++++..+ ..|+||||+|++.++.+++++|+++   +.+++.+|.
T Consensus       105 ---~~~~~~~-~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~---gad~~~~~~  176 (221)
T d1iknd_         105 ---KATNYNG-HTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTY  176 (221)
T ss_dssp             ---GCCCTTC-CCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCT
T ss_pred             ---ccccccc-chhhhHHhhcCChhheeeeccc-CcccccccccCCCCccccccccccHHHHHHHHhc---CCcccccCC
Confidence               0001111 6899999999999999999999 99999887 7899999999999999999999999   678899999


Q ss_pred             CCCccchhcccccCCC
Q 014730          386 SGNNILHLAGRLVPSS  401 (419)
Q Consensus       386 ~G~t~Lh~A~~~~~~~  401 (419)
                      .|.||||+|++.++.+
T Consensus       177 ~G~tpl~~A~~~~~~~  192 (221)
T d1iknd_         177 QGYSPYQLTWGRPSTR  192 (221)
T ss_dssp             TCCCGGGGCTTSSCHH
T ss_pred             CCCCHHHHHHHCCCHH
Confidence            9999999999987655

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=9e-30  Score=238.09  Aligned_cols=134  Identities=18%  Similarity=0.143  Sum_probs=112.1

Q ss_pred             ccccCCCCCccHHHHHHHhhcccCCCchHHHHHH---HHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 014730           22 TAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDK---LATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDL   98 (419)
Q Consensus        22 ~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~---Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~   98 (419)
                      +.+ +..| .||||+|| .      .|+.+++++   |++.|  ++++.+|..|+||||+||..|+.++|++|+++|++ 
T Consensus        84 ~~~-~~~~-~t~L~~Aa-~------~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-  151 (346)
T d2ajaa1          84 HKK-GIKS-EVICFVAA-I------TGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT-  151 (346)
T ss_dssp             HHH-TCCH-HHHHHHHH-H------HCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-
T ss_pred             Hhc-cCCC-CcHHHHHH-H------hCCHHHHHHHHHHHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-
Confidence            345 6688 99999999 9      999877665   78888  99999999999999999999999999999999998 


Q ss_pred             CccCC--CCCchHHHHHHHcCCHHHHHHHHhcCCCCccc--cCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCC
Q 014730           99 TNIRD--SDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY--RGNDGAMVLLFLIAANLYDVALDLLKLHPTIG  167 (419)
Q Consensus        99 ~~~~~--~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  167 (419)
                      ++..+  .+|.||||+|+..|+.+++++|++.|++....  .+.++.||++.|+.+|+.+++++|++.|+++.
T Consensus       152 ~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             ccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            66654  46999999999999999999999999765321  34567788889999999999999999886543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=7.9e-27  Score=201.99  Aligned_cols=200  Identities=20%  Similarity=0.161  Sum_probs=147.5

Q ss_pred             HHHHHHHhhCCCccccc-cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q 014730           51 CLLDKLATKVDPQTLAR-QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEAT  129 (419)
Q Consensus        51 ~~v~~Ll~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g  129 (419)
                      ++|++|+++|  +++|. .|.+|.||||+||..|+.+++++|+++|++ ++.++..+.++++.++..++...........
T Consensus         3 ~~v~~Ll~~g--~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLAQG--AELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHCC--CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-ccccccccccccccccccccccccccccccc
Confidence            5677777777  66765 466777777777777777777777777776 5666777777777777776666655555544


Q ss_pred             CCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccC
Q 014730          130 NGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQS  209 (419)
Q Consensus       130 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (419)
                      ..........|.++.+.+.........+.|...++++. .++..                                    
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~------------------------------------  122 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AADNS------------------------------------  122 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT-CBCTT------------------------------------
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhccccc-ccCCC------------------------------------
Confidence            33322134456666666666666666666665554432 11111                                    


Q ss_pred             CCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHh
Q 014730          210 CIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQK  289 (419)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (419)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (209)
T d1ot8a_         123 --------------------------------------------------------------------------------  122 (209)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHhcCCccccccCCCCchHHHHHhhchHHHHHH
Q 014730          290 LTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNL  369 (419)
Q Consensus       290 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~  369 (419)
                                                + .|||+.|+.+|..++++.+++. +.+++..|..|.||||+|+.+++.+++++
T Consensus       123 --------------------------~-~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~TpL~~A~~~g~~~~v~~  174 (209)
T d1ot8a_         123 --------------------------G-KTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPLFLAAREGSYEASKA  174 (209)
T ss_dssp             --------------------------S-CBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             --------------------------C-CCcchhhcccCcceeeeeeccc-cccccccccccccccchhccccHHHHHHH
Confidence                                      1 5788888888999999999999 99999999999999999999999999999


Q ss_pred             HhhcccccceeeeccCCCCccchhcccccCCC
Q 014730          370 IQGVNFTTFLFSSRDKSGNNILHLAGRLVPSS  401 (419)
Q Consensus       370 L~~~~~~~~~~~~~D~~G~t~Lh~A~~~~~~~  401 (419)
                      |+++   +.+++.+|..|+||||+|++.|+.+
T Consensus       175 Ll~~---gad~n~~d~~g~Tpl~~A~~~~~~~  203 (209)
T d1ot8a_         175 LLDN---FANREITDHMDRLPRDVASERLHHD  203 (209)
T ss_dssp             HHHT---TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHC---CCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            9999   5678899999999999999998855

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=190.83  Aligned_cols=147  Identities=24%  Similarity=0.262  Sum_probs=137.4

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      ||..|+++.|+.|+++.+.++|.+ |..| .||||+|+        .|+.+++++|++.+  .+++..+..|.+|++.++
T Consensus         9 Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g-~t~L~~A~--------~~~~~~v~~Ll~~~--~~~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           9 AAARGDVQEVRRLLHRELVHPDAL-NRFG-KTALQVMM--------FGSTAIALELLKQG--ASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCCTTCC-CTTS-CCHHHHSC--------TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhCCCCCCcc-CCCC-Cccccccc--------cccccccccccccc--cccccccccccccccccc
Confidence            688999999999999889999999 9999 99999888        68889999999999  889999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL  160 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  160 (419)
                      ..++.++++++++++++ ++.++..|.||||+|++.|+.+++++|+ .|++++. ++..|.||||+|+..|+.+++++|+
T Consensus        77 ~~~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR-RDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC-CCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             ccccccccccccccccc-cccccCCCCeeecccccccccccccccc-ccccccc-cCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999998 7899999999999999999999999888 6788988 9999999999999999999999998


Q ss_pred             hh
Q 014730          161 KL  162 (419)
Q Consensus       161 ~~  162 (419)
                      ++
T Consensus       154 ~h  155 (156)
T d1bd8a_         154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            64

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-25  Score=194.84  Aligned_cols=220  Identities=18%  Similarity=0.155  Sum_probs=182.6

Q ss_pred             CCCCccHHHHHHHhhcccCCCchHHHHHHHHh----hCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccC
Q 014730           27 EPGSKTIFHTIAELLVDDDSDEATCLLDKLAT----KVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIR  102 (419)
Q Consensus        27 ~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~  102 (419)
                      ++| .||||+|| .      .|+.++++.|++    .|  ++++.+|..|.||||+|+..|+.+++++|+++|++ .+..
T Consensus         1 ~dG-~TpLh~A~-~------~g~~~~v~~Ll~~~~~~g--~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~   69 (228)
T d1k1aa_           1 EDG-DTPLHIAV-V------QGNLPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMAL   69 (228)
T ss_dssp             CTT-CCHHHHHH-H------TTCHHHHHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCC
T ss_pred             CCC-ccHHHHHH-H------cCCHHHHHHHHHHHHHCC--CCCCccCCCCCccceehhccccccccccccccccc-cccc
Confidence            368 99999999 9      999999998885    66  88999999999999999999999999999999998 7888


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccc---cCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHH
Q 014730          103 DSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY---RGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLN  179 (419)
Q Consensus       103 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~---~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~  179 (419)
                      ...+.++++.|...++.++++.+..........   ......++++.+.........+.|.....+........|.+|++
T Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  149 (228)
T d1k1aa_          70 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI  149 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred             ccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHH
Confidence            999999999999999999999988875543221   55678899999999999999999998887776567888999999


Q ss_pred             HHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCCCCCCCCChhhHHHH
Q 014730          180 TLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPKESTPFGSTQQITAI  259 (419)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (419)
                      .++.....                                                                        
T Consensus       150 ~a~~~~~~------------------------------------------------------------------------  157 (228)
T d1k1aa_         150 HAVENNSL------------------------------------------------------------------------  157 (228)
T ss_dssp             HHHHTTCH------------------------------------------------------------------------
T ss_pred             HHHHhhhh------------------------------------------------------------------------
Confidence            99886321                                                                        


Q ss_pred             HhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHHHhChHHHHHHHHHh
Q 014730          260 FGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAAILGIPEVVNEFIMA  339 (419)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~~~g~~e~v~~Ll~~  339 (419)
                                                           ...+.+.+...........+ .||||+|+..|+.++|++|+++
T Consensus       158 -------------------------------------~~~~~~~~~~~~~~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~  199 (228)
T d1k1aa_         158 -------------------------------------SMVQLLLQHGANVNAQMYSG-SSALHSASGRGLLPLVRTLVRS  199 (228)
T ss_dssp             -------------------------------------HHHHHHHHTTCCTTCBCTTS-CBHHHHHHHHTCHHHHHHHHHT
T ss_pred             -------------------------------------hhhhhhhhhccccccccccC-cchHHHHHHcCCHHHHHHHHHC
Confidence                                                 11111122221001112222 7999999999999999999999


Q ss_pred             cCCccccccCCCCchHHHHHhhchHHHHH
Q 014730          340 YDSCSNWSNQDGHTIFDHAVLHRREKVFN  368 (419)
Q Consensus       340 ~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~  368 (419)
                       |+|++.+|..|+||||+|+++++.++||
T Consensus       200 -Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         200 -GADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             -TCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             -CCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence             9999999999999999999999999985

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-25  Score=183.57  Aligned_cols=148  Identities=22%  Similarity=0.282  Sum_probs=105.5

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |+..|+.++|+.|+++ |.++|.+ |..| .||||+|+        .|+.+++++|++.|  ++++..+..|.++++.++
T Consensus         8 Aa~~g~~~~v~~Ll~~-g~d~n~~-d~~g-~TpL~~A~--------~~~~ei~~~Ll~~~--a~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           8 AAARGDLEQLTSLLQN-NVNVNAQ-NGFG-RTALQVMK--------LGNPEIARRLLLRG--ANPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHTCHHHHHHHTTS-CCCTTCC-CTTS-CCHHHHCC--------SSCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHC-CCCcCcc-CCcc-cccccccc--------cccccccccccccc--cccccccccCcccccccc
Confidence            5666777777777765 6667776 7777 77777655        56777777777777  667777777777777777


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCC-CCccccCCCCCcHHHHHHHcCcHHHHHHH
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN-GVDIYRGNDGAMVLLFLIAANLYDVALDL  159 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  159 (419)
                      ..++.+.++.|++.+.+ ++..+..|.+|+|+|+..++.+++++|+++|+ +.+. ++..|.||||+|+..++.+++++|
T Consensus        75 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-RNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-cCCCCCCHHHHHHHcCCHHHHHHH
Confidence            77777777777777766 56667777777777777777777777777765 4555 667777777777777777777777


Q ss_pred             HhhC
Q 014730          160 LKLH  163 (419)
Q Consensus       160 l~~~  163 (419)
                      +++|
T Consensus       153 l~~G  156 (156)
T d1ihba_         153 QANG  156 (156)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            7654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=5.5e-27  Score=219.00  Aligned_cols=136  Identities=14%  Similarity=0.083  Sum_probs=103.4

Q ss_pred             CchHHHHHHHHhhCCC---------ccccccCCCCChHHHHHHHcCCHHHHHH---HHhcCCCCCccCCCCCchHHHHHH
Q 014730           47 DEATCLLDKLATKVDP---------QTLARQDNHGHTAVIFCAAKGNLKALKV---LLKYNPDLTNIRDSDGYLPVHNAA  114 (419)
Q Consensus        47 ~g~~~~v~~Ll~~~~~---------~~~~~~~~~g~t~L~~A~~~g~~~~~~~---Ll~~~~~~~~~~~~~g~t~L~~A~  114 (419)
                      .+..++.+.+...+..         ..++.++..|.||||+||..|+.+++++   |++.|++ ++.++..|.||||+|+
T Consensus        56 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa  134 (346)
T d2ajaa1          56 KNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAA  134 (346)
T ss_dssp             SHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHH
Confidence            5556666666555400         1234567789999999999999887765   7888998 8999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCccccC--CCCCcHHHHHHHcCcHHHHHHHHhhCCCCCc--CCCCCCCcHHHHHHhC
Q 014730          115 YYGHKDTFQYLLEATNGVDIYRG--NDGAMVLLFLIAANLYDVALDLLKLHPTIGR--DNIDSRRIVLNTLSQK  184 (419)
Q Consensus       115 ~~g~~~~~~~Ll~~g~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~~~l~~a~~~  184 (419)
                      +.|+.++|++|++.|++++. .+  .+|.||||+|+..|+.+++++|++.|+....  ..+..|.+|++.|+.+
T Consensus       135 ~~G~~~~v~~Ll~~g~~~~~-~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~  207 (346)
T d2ajaa1         135 ENGHLHVLNRLCELAPTEIM-AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR  207 (346)
T ss_dssp             HTTCHHHHHHHHHSCTTTHH-HHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred             HCCCHHHHHHHHHcCCCccc-cccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhc
Confidence            99999999999999999887 54  4699999999999999999999999875421  1223445566666554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8e-24  Score=173.52  Aligned_cols=143  Identities=17%  Similarity=0.155  Sum_probs=101.6

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .||||.|| .      .|+.++|++|+++|  ++++ .|..|.||||+|+..++.+++..++..... ....+..+.+++
T Consensus         3 ~t~L~~Aa-~------~g~~~~v~~LL~~g--a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   71 (153)
T d1awcb_           3 GKKLLEAA-R------AGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPL   71 (153)
T ss_dssp             HHHHHHHH-H------HTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHH
T ss_pred             CHHHHHHH-H------CCCHHHHHHHHHcC--CCcc-cccCCCcccccccccccccccccccccccc-cccccccccccc
Confidence            36777777 7      77777777777777  5554 566777777777777777777777777665 455555666777


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCC
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  186 (419)
                      +.++...+.+++++++.+|++.+. .+..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..+.
T Consensus        72 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          72 HMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccceeeecccccCCcccc-ccccCchHHHhhhhcchhheeeeccccccCCc-ccCCCCCCHHHHHHHcCC
Confidence            777777777777777777777766 67777777777777777777777777777766 667777777777776654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7e-24  Score=174.48  Aligned_cols=143  Identities=22%  Similarity=0.220  Sum_probs=135.1

Q ss_pred             cHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHH
Q 014730           32 TIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVH  111 (419)
Q Consensus        32 t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (419)
                      +|||+|| .      .|+.++|++|+++|  ++++.+|..|.||||+|+ .|+.+++++|++++++ ++.++..|.+|++
T Consensus         3 ~~Lh~Aa-~------~g~~~~v~~Ll~~g--~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~   71 (156)
T d1ihba_           3 NELASAA-A------RGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIH   71 (156)
T ss_dssp             HHHHHHH-H------HTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             HHHHHHH-H------cCCHHHHHHHHHCC--CCcCccCCcccccccccc-cccccccccccccccc-cccccccCccccc
Confidence            7999999 9      99999999999999  999999999999999886 7899999999999999 7999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCC
Q 014730          112 NAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       112 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  186 (419)
                      .++..+..+.+++|++.+.+++. .+..|.+|++.|+..++.+++++|+++++.....+|..|.||||+|+..+.
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          72 DAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  145 (156)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999 999999999999999999999999999985444899999999999998754

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-24  Score=171.32  Aligned_cols=119  Identities=22%  Similarity=0.189  Sum_probs=112.6

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCc-hH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGY-LP  109 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~-t~  109 (419)
                      .++||.|+ .      .|+.++|++|+++|  ++++.+|..|.||||+|+ .|+.+++++|+++|++ ++.++..+. ||
T Consensus         4 ~~~L~~Aa-~------~G~~~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~   72 (125)
T d1bi7b_           4 ADWLATAA-A------RGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP   72 (125)
T ss_dssp             TTHHHHHH-H------HTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred             hhHHHHHH-H------CCCHHHHHHHHHcC--Cccccccccccccccccc-cccccccccccccccc-cccccccccccc
Confidence            79999999 9      99999999999999  999999999999999775 7999999999999999 788888765 69


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 014730          110 VHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLK  161 (419)
Q Consensus       110 L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  161 (419)
                      ||+|++.|+.+++++|+++|++++. ++..|.||||+|+..|+.+++++|+.
T Consensus        73 L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          73 VHDAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccc-ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999 99999999999999999999999974

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.7e-23  Score=170.23  Aligned_cols=142  Identities=20%  Similarity=0.197  Sum_probs=131.9

Q ss_pred             cHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHH
Q 014730           32 TIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVH  111 (419)
Q Consensus        32 t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (419)
                      +.|+.|| .      .|+.++|+.|++.+ +.+++..|..|+||||+|+. |+.+++++|++++.+ ++..+..|.+|++
T Consensus         4 ~~L~~Aa-~------~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~   73 (156)
T d1bd8a_           4 DRLSGAA-A------RGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS-PNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHH-H------HTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             HHHHHHH-H------cCCHHHHHHHHHhC-CCCCCccCCCCCcccccccc-ccccccccccccccc-ccccccccccccc
Confidence            4599999 9      99999999999975 48899999999999999874 889999999999999 7999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHHhCCC
Q 014730          112 NAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLSQKPY  186 (419)
Q Consensus       112 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~~~~~  186 (419)
                      .++..++.+++++++++|++++. .+..|.||||+|+..|+.+++++|+ .|+++. .+|..|.||||+|+..+.
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~n~-~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-RRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-CCCTTSCCHHHHHHHSCC
T ss_pred             ccccccccccccccccccccccc-ccCCCCeeecccccccccccccccc-cccccc-ccCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999 9999999999999999999999887 678876 899999999999999764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=8.5e-23  Score=167.30  Aligned_cols=118  Identities=19%  Similarity=0.151  Sum_probs=110.3

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .||||+|+ .      .++.++++.++...  ......+..+.++++.++...+.+++++++.++++ .+.++..|.|||
T Consensus        35 ~t~L~~a~-~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~T~L  104 (153)
T d1awcb_          35 TSPLHLAA-Q------YGHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTAL  104 (153)
T ss_dssp             CCHHHHHH-H------HTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHH
T ss_pred             Cccccccc-c------cccccccccccccc--ccccccccccccccccccccccceeeecccccCCc-cccccccCchHH
Confidence            06999999 9      99999999999988  66677788899999999999999999999999998 788999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHH
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDL  159 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  159 (419)
                      |+|+..|+.+++++|++.|++++. ++.+|.||||+|+.+|+.+++++|
T Consensus       105 ~~A~~~g~~~iv~~ll~~gad~~~-~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         105 HWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhhhhcchhheeeeccccccCCcc-cCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999999999999 999999999999999999999976

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.6e-24  Score=169.47  Aligned_cols=106  Identities=23%  Similarity=0.285  Sum_probs=78.8

Q ss_pred             ccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHH
Q 014730           31 KTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPV  110 (419)
Q Consensus        31 ~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (419)
                      .|||++|+ .      .|+.++|++|+++|  ++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.|||
T Consensus         3 ~tpL~~A~-~------~g~~~~v~~Ll~~g--~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpL   72 (118)
T d1myoa_           3 DKEFMWAL-K------NGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPL   72 (118)
T ss_dssp             HHHHHHHH-H------TTCHHHHHHHHTTT--CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHH
T ss_pred             ChHHHHHH-H------CCCHHHHHHHHHhh--hccccccccccccccccccccccccccccccccce-eeecccccccch
Confidence            36777777 7      77777777777777  67777777777777777777777777777777777 677777777777


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHH
Q 014730          111 HNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFL  147 (419)
Q Consensus       111 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a  147 (419)
                      |+|+.+|+.+++++|+++|++++. ++..|.||||+|
T Consensus        73 h~A~~~~~~~~v~~Ll~~Gad~~~-~d~~G~t~l~~a  108 (118)
T d1myoa_          73 LSAVYEGHVSCVKLLLSKGADKTV-KGPDGLTALEAT  108 (118)
T ss_dssp             HHHHTTTCCHHHHHHHTTCCCSSS-SSSSTCCCCCTC
T ss_pred             hhhhhcCchhhhhhhhccccccee-eCCCCCCHHHHH
Confidence            777777777777777777777777 777777777766

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.2e-23  Score=192.48  Aligned_cols=193  Identities=11%  Similarity=0.002  Sum_probs=121.4

Q ss_pred             cCCCCCccC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCc-------HHHHHHHHhhCCC
Q 014730           94 YNPDLTNIR-DSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANL-------YDVALDLLKLHPT  165 (419)
Q Consensus        94 ~~~~~~~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~-------~~~~~~Ll~~~~~  165 (419)
                      .+.+ ++.. |..|.||||+|+..|+.+++++|+++|++++. ++..|+||||.|+..++       .++++++...   
T Consensus        95 ~~~d-vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~---  169 (301)
T d1sw6a_          95 TQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC---  169 (301)
T ss_dssp             SCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG---
T ss_pred             cCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-CCcccccHHHHhhhcccchhhhhHHHHHHHHhhh---
Confidence            4555 5654 88999999999999999999999999999999 99999999999998765       2455554432   


Q ss_pred             CCcCCCCCCCcHHHHHHhCCCCCCCCCchhHHHHHHHhhhcccCCCCcccccccccccCCCCCCCCCCCccccccccCCC
Q 014730          166 IGRDNIDSRRIVLNTLSQKPYAFASGSRLGRLRRLIYNCWCQQSCIPLEKERVPSIQSNDDQNVDGDTENFTVTSKMHPK  245 (419)
Q Consensus       166 ~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (419)
                      .. ..|..|+||||.++.........      ...                                             
T Consensus       170 ~~-~~d~~g~t~lh~~~~~~~~~~~~------~~~---------------------------------------------  197 (301)
T d1sw6a_         170 LI-LEDSMNRTILHHIIITSGMTGCS------AAA---------------------------------------------  197 (301)
T ss_dssp             GG-EECTTCCCHHHHHHHHHTSTTCH------HHH---------------------------------------------
T ss_pred             hh-hcccccCCHHHHHHHHhCccccH------HHH---------------------------------------------
Confidence            23 57888999999887642211000      000                                             


Q ss_pred             CCCCCCChhhHHHHHhhHHHHHHHHHHHHhhhcCchhHHHHHHhhhhHhHHHHHHHHHhhhhhccccchhhhhHHHHHHH
Q 014730          246 ESTPFGSTQQITAIFGLMFHKLNRMLWNALMRLAPSIKVIHDQKLTHMRTVEIVRIICEGVVWTNFQKSAQLSGAMLSAA  325 (419)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~t~L~~A~  325 (419)
                                           .+.+                         -.++..+................++++.+.
T Consensus       198 ---------------------~~~~-------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  231 (301)
T d1sw6a_         198 ---------------------KYYL-------------------------DILMGWIVKKQNRPIQSGTNEKESKPNDKN  231 (301)
T ss_dssp             ---------------------HHHH-------------------------HHHHHHHHHGGGCCEEEC------------
T ss_pred             ---------------------HHHH-------------------------HHHHHHHHhcCCcchhcccccccchhHHHH
Confidence                                 0000                         011111112211000001111134444443


Q ss_pred             HhChHHHH-----HHHHHhcCCccccccCCCCchHHHHHhhchHHHHHHHhhcccccceeeeccCCCCccchhcc
Q 014730          326 ILGIPEVV-----NEFIMAYDSCSNWSNQDGHTIFDHAVLHRREKVFNLIQGVNFTTFLFSSRDKSGNNILHLAG  395 (419)
Q Consensus       326 ~~g~~e~v-----~~Ll~~~~~d~~~~~~~g~t~Lh~Av~~~~~~iv~~L~~~~~~~~~~~~~D~~G~t~Lh~A~  395 (419)
                      .......+     .+++..   .+|.+|..|+||||+|+++++.++|++|++.   +.+++..|+.|.|||||||
T Consensus       232 ~~~~~~~~~~~~~~~~~~~---~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~---GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         232 GERKDSILENLDLKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ----CHHHHHCSHHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGTC
T ss_pred             hcchHHHHHHHhhHHHHhc---CccCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHcC
Confidence            33333322     233333   3677899999999999999999999999999   6778999999999999997

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-23  Score=164.97  Aligned_cols=121  Identities=19%  Similarity=0.267  Sum_probs=111.5

Q ss_pred             cHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHH
Q 014730           32 TIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVH  111 (419)
Q Consensus        32 t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  111 (419)
                      ++|+.|| .      .|+.++|++|+++|  ++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||
T Consensus         3 ~lL~~A~-~------~G~~~~v~~Ll~~g--~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh   72 (130)
T d1ycsb1           3 ALLLDSS-L------EGEFDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLH   72 (130)
T ss_dssp             HHHHHHH-H------HTCHHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHH
T ss_pred             HHHHHHH-H------cCCHHHHHHHHHcC--CCccccccccccccccccccccccccccccccccc-cccccccCccccc
Confidence            6899999 9      99999999999999  89999999999999999999999999999999999 7999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccC-CCCCcHHHHH--HHcCcHHHHHHHHhhC
Q 014730          112 NAAYYGHKDTFQYLLEATNGVDIYRG-NDGAMVLLFL--IAANLYDVALDLLKLH  163 (419)
Q Consensus       112 ~A~~~g~~~~~~~Ll~~g~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~  163 (419)
                      +|+.+|+.+++++|+++|++++. .+ ..+.||++++  ...|+.+++++|+...
T Consensus        73 ~A~~~g~~~~v~~Ll~~ga~v~~-~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          73 CAASCNNVQVCKFLVESGAAVFA-MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHcCCCccc-ccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999999999987 54 5688887766  5678899999998753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.8e-23  Score=189.15  Aligned_cols=149  Identities=15%  Similarity=0.084  Sum_probs=123.1

Q ss_pred             CcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHHHcCCH-------HHHHH
Q 014730           18 PDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNL-------KALKV   90 (419)
Q Consensus        18 ~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~g~~-------~~~~~   90 (419)
                      +.++|..+|.+| .||||+|| .      .|+.++|++|+++|  ++++.+|..|+||||.||..++.       +++++
T Consensus        96 ~~dvn~~~D~~G-~T~LH~Aa-~------~g~~~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~  165 (301)
T d1sw6a_          96 QLNLNIPVDEHG-NTPLHWLT-S------IANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY  165 (301)
T ss_dssp             CCCSCSCCSTTC-CCHHHHHH-H------TTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH
T ss_pred             CCCcCcCcCCCC-CCHHHHHH-H------cCCHHHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHH
Confidence            557777778999 99999999 9      99999999999999  99999999999999999987652       45555


Q ss_pred             HHhcCCCCCccCCCCCchHHHHHHHcCC----HH--------HHHHHHhcCCC---------------------------
Q 014730           91 LLKYNPDLTNIRDSDGYLPVHNAAYYGH----KD--------TFQYLLEATNG---------------------------  131 (419)
Q Consensus        91 Ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~--------~~~~Ll~~g~~---------------------------  131 (419)
                      +.+.    +..+|..|+||||.++..+.    ..        +++++.+.+..                           
T Consensus       166 l~~~----~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (301)
T d1sw6a_         166 LYPC----LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN  241 (301)
T ss_dssp             HGGG----GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHH
T ss_pred             Hhhh----hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHH
Confidence            5443    56678899999998876543    22        33444444432                           


Q ss_pred             ----------CccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 014730          132 ----------VDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDSRRIVLNTLS  182 (419)
Q Consensus       132 ----------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  182 (419)
                                +|. +|..|+||||+|+..|+.+++++|++.|+++. .+|..|.|||++|+
T Consensus       242 ~~~~~~~~~~in~-~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~-~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         242 LDLKWIIANMLNA-QDSNGDTCLNIAARLGNISIVDALLDYGADPF-IANKSGLRPVDFGA  300 (301)
T ss_dssp             CSHHHHHHHTTTC-CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT-CCCTTSCCGGGGTC
T ss_pred             HhhHHHHhcCccC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHcC
Confidence                      455 78899999999999999999999999999988 89999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=5.9e-23  Score=160.41  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=103.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCc
Q 014730           73 HTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANL  152 (419)
Q Consensus        73 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~  152 (419)
                      .|||++|++.|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++. ++..|.||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~-~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC-CSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccceeee-cccccccchhhhhhcCc
Confidence            5899999999999999999999999 899999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHhhCCCCCcCCCCCCCcHHHHHH
Q 014730          153 YDVALDLLKLHPTIGRDNIDSRRIVLNTLS  182 (419)
Q Consensus       153 ~~~~~~Ll~~~~~~~~~~~~~g~~~l~~a~  182 (419)
                      .+++++|+++|+++. .+|..|.||||+|.
T Consensus        81 ~~~v~~Ll~~Gad~~-~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGADKT-VKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCCSS-SSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcccccce-eeCCCCCCHHHHHh
Confidence            999999999999987 89999999999873

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-22  Score=160.59  Aligned_cols=113  Identities=21%  Similarity=0.210  Sum_probs=105.9

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCC-hHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGH-TAVIFC   79 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~-t~L~~A   79 (419)
                      |++.|++++|+.|+++ |.++|.+ +..| .||||.|+        .|+.+++++|++.|  ++++.++..|. ||||+|
T Consensus        10 Aa~~G~~~~v~~Ll~~-gad~n~~-~~~g-~t~l~~a~--------~g~~~~v~~Ll~~g--a~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_          10 AAARGRVEEVRALLEA-GANPNAP-NSYG-RRPIQVMM--------MGSARVAELLLLHG--AEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             HHHHTCHHHHHHHHTT-TCCTTCC-CSSS-CCTTTSSC--------TTCHHHHHHHHTTT--CCCCCCCTTTCCCHHHHH
T ss_pred             HHHCCCHHHHHHHHHc-CCccccc-cccc-cccccccc--------cccccccccccccc--cccccccccccccccccc
Confidence            6789999999999987 8899999 9999 99999766        79999999999999  89999988765 699999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHh
Q 014730           80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE  127 (419)
Q Consensus        80 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~  127 (419)
                      ++.|+.+++++|+++|++ ++.+|..|.||||+|+++|+.+++++|++
T Consensus        77 ~~~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          77 AREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999 89999999999999999999999999975

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=9.2e-21  Score=154.58  Aligned_cols=116  Identities=12%  Similarity=0.120  Sum_probs=106.0

Q ss_pred             CchHHHHHHHHhhCCCcccccc------CCCCChHHHHHHHc---CCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcC
Q 014730           47 DEATCLLDKLATKVDPQTLARQ------DNHGHTAVIFCAAK---GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYG  117 (419)
Q Consensus        47 ~g~~~~v~~Ll~~~~~~~~~~~------~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g  117 (419)
                      .+++..+..++..|  .+++..      +..|.||||+|+..   |+.+++++|+++|++ ++.+|..|.||||+|+..|
T Consensus        16 ~~dl~~l~~~~~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~A~~~~   92 (154)
T d1dcqa1          16 TRDIFGLLQAYADG--VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTD   92 (154)
T ss_dssp             TTCHHHHHHHHHTT--CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTT
T ss_pred             hCCHHHHHHHHHcC--CCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccccccccc
Confidence            99999999999988  555443      67899999999974   788999999999999 7999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCcHHHHHHHHhhCCCC
Q 014730          118 HKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTI  166 (419)
Q Consensus       118 ~~~~~~~Ll~~g~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  166 (419)
                      +.+++++|+++|++++. ++..|.||||+|+..|+.+++++|++.++..
T Consensus        93 ~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          93 NAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccCccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999 9999999999999999999999999976543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.8e-21  Score=156.87  Aligned_cols=122  Identities=25%  Similarity=0.337  Sum_probs=106.8

Q ss_pred             CccCCChHHHHHHHHhCCcccccc-----cCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAK-----IVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTA   75 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~   75 (419)
                      |++.+|+..+..++.. +.+++.+     .+..| .||||+|+ .   ....|+.+++++|++.|  ++++.+|..|.||
T Consensus        13 Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g-~t~Lh~A~-~---~~~~~~~~iv~~Ll~~g--adin~~d~~g~Tp   84 (154)
T d1dcqa1          13 AVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPD-ETALHLAV-R---SVDRTSLHIVDFLVQNS--GNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTT-CBHHHHHH-H---HCCTTTHHHHHHHHHHC--SCTTCCCTTCCCH
T ss_pred             HHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCC-CchHHHHH-H---hcCCCCHHHHHHHHHcC--CChhhhhhhhccc
Confidence            5788999999999977 5554433     15678 99999999 5   11136799999999999  9999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q 014730           76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG  131 (419)
Q Consensus        76 L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~  131 (419)
                      ||+||..|+.+++++|+++|++ ++.+|..|.||||+|++.|+.+++++|++.++.
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999 799999999999999999999999999998764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.9e-22  Score=156.71  Aligned_cols=116  Identities=16%  Similarity=0.126  Sum_probs=106.0

Q ss_pred             CccCCChHHHHHHHHhCCcccccccCCCCCccHHHHHHHhhcccCCCchHHHHHHHHhhCCCccccccCCCCChHHHHHH
Q 014730            1 MIEKNDWPGVEDFVTNHPDALTAKIVEPGSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCA   80 (419)
Q Consensus         1 A~~~g~~~~v~~ll~~~~~~~~~~~~~~g~~t~L~~A~~~~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~L~~A~   80 (419)
                      |++.|+.++|+.|+++ +.++|.+ |.+| .||||+|| .      .|+.+++++|++.|  .+++.+|.+|+||||+|+
T Consensus         8 A~~~G~~~~v~~Ll~~-g~d~n~~-d~~g-~t~Lh~A~-~------~~~~~~~~~ll~~g--~~~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           8 SSLEGEFDLVQRIIYE-VDDPSLP-NDEG-ITALHNAV-C------AGHTEIVKFLVQFG--VNVNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHTCHHHHHHHTST-TSSCCCC-CTTS-CCHHHHHH-H------HTCHHHHHHHHHHT--CCTTCCCTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHc-CCCcccc-cccc-cccccccc-c------cccccccccccccc--cccccccccCcccccccc
Confidence            6789999999999987 8899999 9999 99999999 9      99999999999999  899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCC-CCchHHHHH--HHcCCHHHHHHHHhcC
Q 014730           81 AKGNLKALKVLLKYNPDLTNIRDS-DGYLPVHNA--AYYGHKDTFQYLLEAT  129 (419)
Q Consensus        81 ~~g~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A--~~~g~~~~~~~Ll~~g  129 (419)
                      ..|+.+++++|+++|++ ++..+. .+.||++++  +..|+.+++++|++.+
T Consensus        76 ~~g~~~~v~~Ll~~ga~-v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999999 676664 588887765  5778999999999764