Citrus Sinensis ID: 014738
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 419 | 2.2.26 [Sep-21-2011] | |||||||
| Q5HZ00 | 422 | Solanesyl diphosphate syn | yes | no | 0.990 | 0.983 | 0.715 | 1e-172 | |
| Q653T6 | 430 | Solanesyl-diphosphate syn | yes | no | 0.890 | 0.867 | 0.72 | 1e-154 | |
| Q7S565 | 449 | Probable hexaprenyl pyrop | N/A | no | 0.794 | 0.741 | 0.416 | 8e-70 | |
| Q33DR2 | 409 | Decaprenyl-diphosphate sy | yes | no | 0.813 | 0.833 | 0.391 | 2e-68 | |
| Q6CBH3 | 452 | Probable hexaprenyl pyrop | yes | no | 0.809 | 0.75 | 0.378 | 2e-67 | |
| Q54VJ9 | 456 | Decaprenyl-diphosphate sy | yes | no | 0.689 | 0.633 | 0.412 | 1e-66 | |
| Q5T2R2 | 415 | Decaprenyl-diphosphate sy | yes | no | 0.768 | 0.775 | 0.4 | 5e-66 | |
| P72580 | 323 | Prenyl transferase OS=Syn | N/A | no | 0.749 | 0.972 | 0.407 | 8e-64 | |
| Q0INZ4 | 372 | Probable solanesyl-diphos | no | no | 0.713 | 0.803 | 0.400 | 6e-62 | |
| Q75HZ9 | 403 | Solanesyl-diphosphate syn | no | no | 0.715 | 0.744 | 0.392 | 2e-61 |
| >sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 603 bits (1555), Expect = e-172, Method: Compositional matrix adjust.
Identities = 305/426 (71%), Positives = 354/426 (83%), Gaps = 11/426 (2%)
Query: 1 MLIYRGLSRIS-RISKKTSF--GRRWLPSH--PLLSGASHSAAAAAADSSVKVLGCREAY 55
ML R ++RIS + + SF + L SH ++ HS + DS K CR Y
Sbjct: 1 MLFTRSVARISSKFLRNRSFYGSSQSLASHRFAIIPDQGHSCS----DSPHKGYVCRTTY 56
Query: 56 SWSLPALHGIRHQIHHQSSSVIE--LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEY 113
S P G HQ++HQSSS++E LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEY
Sbjct: 57 SLKSPVFGGFSHQLYHQSSSLVEEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEY 116
Query: 114 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 173
FFK GV+GK+FR T+LLLMATALNVRVPE L D + +ELR RQ+ IAEITEMIHVA
Sbjct: 117 FFKRGVQGKQFRSTILLLMATALNVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVA 176
Query: 174 SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 233
SLLHDDVLDDADTRRG+GSLN VMGNK++VLAGDFLLSRAC ALA+LKNTEVV LLAT V
Sbjct: 177 SLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAV 236
Query: 234 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDY 293
EHLVTGETM++T+S++QR SMDYYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+Y
Sbjct: 237 EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEY 296
Query: 294 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFE 353
G+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV+Q +
Sbjct: 297 GRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEK 356
Query: 354 DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 413
D NVDIALEYLGKS+GIQ+ RELA++HANLAAAAI SLPE ++EDV +SRRAL+DLTHR
Sbjct: 357 DPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHR 416
Query: 414 VITRNK 419
VITRNK
Sbjct: 417 VITRNK 422
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May be involved in the supply of solanesyl diphosphate for ubiquinone-9 biosynthesis in mitochondria. Synthesizes C25 to C45 medium / long-chain products depending on the type of substrate available. Can use geranyl diphosphate, farnesyl diphosphate or geranylgeranyl diphosphate as substrates, but not dimethylallyl diphosphate. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 8EC: 5 |
| >sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=SPS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=preA PE=3 SV=2 | Back alignment and function description |
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| >sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment) OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SPS2 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 419 | ||||||
| 27261729 | 426 | geranylgeranyl diphosphate synthase [Cit | 1.0 | 0.983 | 0.976 | 0.0 | |
| 12055493 | 416 | geranyl diphosphat synthase [Quercus rob | 0.973 | 0.980 | 0.799 | 0.0 | |
| 449433571 | 423 | PREDICTED: solanesyl diphosphate synthas | 0.992 | 0.983 | 0.779 | 0.0 | |
| 255578548 | 417 | geranylgeranyl pyrophosphate synthase, p | 0.990 | 0.995 | 0.817 | 0.0 | |
| 343466169 | 423 | geranyl diphosphate synthase [Siraitia g | 0.992 | 0.983 | 0.772 | 0.0 | |
| 11322972 | 321 | geranyl diphosphate synthase [Citrus sin | 0.766 | 1.0 | 0.993 | 0.0 | |
| 359489044 | 422 | PREDICTED: decaprenyl-diphosphate syntha | 0.990 | 0.983 | 0.765 | 0.0 | |
| 350538483 | 415 | geranyl pyrophosphate synthase [Solanum | 0.976 | 0.985 | 0.762 | 1e-180 | |
| 356514290 | 480 | PREDICTED: probable hexaprenyl pyrophosp | 0.863 | 0.754 | 0.831 | 1e-178 | |
| 356563558 | 419 | PREDICTED: probable hexaprenyl pyrophosp | 0.964 | 0.964 | 0.768 | 1e-177 |
| >gi|27261729|gb|AAN86061.1| geranylgeranyl diphosphate synthase [Citrus unshiu] | Back alignment and taxonomy information |
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Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/426 (97%), Positives = 417/426 (97%), Gaps = 7/426 (1%)
Query: 1 MLIYRGLSRISRISKKTSFGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSWSLP 60
MLIYRGLSRISRISKKT FGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSWSLP
Sbjct: 1 MLIYRGLSRISRISKKTPFGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSWSLP 60
Query: 61 ALHGIRHQIHHQSSSVIE-------LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEY 113
ALHGIRHQIHHQSSSVIE LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEY
Sbjct: 61 ALHGIRHQIHHQSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEY 120
Query: 114 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 173
FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA
Sbjct: 121 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 180
Query: 174 SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 233
SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV
Sbjct: 181 SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 240
Query: 234 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDY 293
EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDY
Sbjct: 241 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDY 300
Query: 294 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFE 353
GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI+HGIITAPILFAMEEFPQLRTVVEQGFE
Sbjct: 301 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIQHGIITAPILFAMEEFPQLRTVVEQGFE 360
Query: 354 DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 413
DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDV KSRRALLDLTHR
Sbjct: 361 DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVRKSRRALLDLTHR 420
Query: 414 VITRNK 419
VITRNK
Sbjct: 421 VITRNK 426
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Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12055493|emb|CAC20852.1| geranyl diphosphat synthase [Quercus robur] | Back alignment and taxonomy information |
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| >gi|449433571|ref|XP_004134571.1| PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449490572|ref|XP_004158644.1| PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255578548|ref|XP_002530137.1| geranylgeranyl pyrophosphate synthase, putative [Ricinus communis] gi|223530362|gb|EEF32253.1| geranylgeranyl pyrophosphate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|343466169|gb|AEM42978.1| geranyl diphosphate synthase [Siraitia grosvenorii] | Back alignment and taxonomy information |
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| >gi|11322972|emb|CAC16851.1| geranyl diphosphate synthase [Citrus sinensis] | Back alignment and taxonomy information |
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| >gi|359489044|ref|XP_002268229.2| PREDICTED: decaprenyl-diphosphate synthase subunit 1 [Vitis vinifera] gi|296090181|emb|CBI40000.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|350538483|ref|NP_001234089.1| geranyl pyrophosphate synthase [Solanum lycopersicum] gi|82659078|gb|ABB88703.1| geranyl pyrophosphate synthase [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|356514290|ref|XP_003525839.1| PREDICTED: probable hexaprenyl pyrophosphate synthase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356563558|ref|XP_003550028.1| PREDICTED: probable hexaprenyl pyrophosphate synthase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 419 | ||||||
| TAIR|locus:2062315 | 422 | GPS1 "geranyl diphosphate synt | 0.880 | 0.874 | 0.716 | 6.7e-136 | |
| ZFIN|ZDB-GENE-030131-4430 | 411 | pdss1 "prenyl (decaprenyl) dip | 0.768 | 0.783 | 0.385 | 2.5e-58 | |
| ASPGD|ASPL0000038406 | 456 | AN10340 [Emericella nidulans ( | 0.606 | 0.557 | 0.415 | 9.9e-58 | |
| SGD|S000000207 | 473 | COQ1 "Hexaprenyl pyrophosphate | 0.398 | 0.353 | 0.392 | 2e-57 | |
| CGD|CAL0005672 | 510 | orf19.7478 [Candida albicans ( | 0.379 | 0.311 | 0.369 | 7.1e-56 | |
| UNIPROTKB|E1BZW8 | 366 | PDSS1 "Uncharacterized protein | 0.823 | 0.942 | 0.358 | 1.8e-55 | |
| UNIPROTKB|F6RJN8 | 418 | PDSS1 "Uncharacterized protein | 0.768 | 0.770 | 0.376 | 4.8e-55 | |
| MGI|MGI:1889278 | 409 | Pdss1 "prenyl (solanesyl) diph | 0.768 | 0.787 | 0.382 | 9.9e-55 | |
| UNIPROTKB|F1PV51 | 365 | PDSS1 "Uncharacterized protein | 0.768 | 0.882 | 0.382 | 1.3e-54 | |
| UNIPROTKB|F1RTW8 | 410 | PDSS1 "Uncharacterized protein | 0.768 | 0.785 | 0.385 | 1.6e-54 |
| TAIR|locus:2062315 GPS1 "geranyl diphosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
Identities = 266/371 (71%), Positives = 305/371 (82%)
Query: 51 CREAYSWSLPALHGIRHQIHHQSSSVIE--LDPFSLVADELSILAKRLRSMVVAEVPKLA 108
CR YS P G HQ++HQSSS++E LDPFSLVADELS+L+ +LR MV+AEVPKLA
Sbjct: 52 CRTTYSLKSPVFGGFSHQLYHQSSSLVEEELDPFSLVADELSLLSNKLREMVLAEVPKLA 111
Query: 109 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 168
SAAEYFFK GV+GK+FR T+LLLMATALNVRVPE L D + +ELR RQ+ IAEITE
Sbjct: 112 SAAEYFFKRGVQGKQFRSTILLLMATALNVRVPEALIGESTDIVTSELRVRQRGIAEITE 171
Query: 169 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXX 228
MIHVASLLHDDVLDDADTRRG+GSLN VMGNK++VLAGDFLLSRAC ALA+LKN
Sbjct: 172 MIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVAL 231
Query: 229 XXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI 288
GETM++T+S++QR SMDYYMQKTYYKTASLISNSCKA+A+L GQTAEVA+
Sbjct: 232 LATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAV 291
Query: 289 LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVV 348
LAF+YG+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV
Sbjct: 292 LAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVV 351
Query: 349 EQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALL 408
+Q +D NVDIALEYLGKS+GIQ+ REL I SLPE ++EDV +SRRAL+
Sbjct: 352 DQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALI 411
Query: 409 DLTHRVITRNK 419
DLTHRVITRNK
Sbjct: 412 DLTHRVITRNK 422
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| ZFIN|ZDB-GENE-030131-4430 pdss1 "prenyl (decaprenyl) diphosphate synthase, subunit 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000038406 AN10340 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| SGD|S000000207 COQ1 "Hexaprenyl pyrophosphate synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| CGD|CAL0005672 orf19.7478 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BZW8 PDSS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6RJN8 PDSS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:1889278 Pdss1 "prenyl (solanesyl) diphosphate synthase, subunit 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PV51 PDSS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RTW8 PDSS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q33DR2 | DPS1_MOUSE | 2, ., 5, ., 1, ., 9, 1 | 0.3918 | 0.8138 | 0.8337 | yes | no |
| Q5HZ00 | SPS3_ARATH | 2, ., 5, ., 1, ., 8, 5 | 0.7159 | 0.9904 | 0.9834 | yes | no |
| Q653T6 | SPS1_ORYSJ | 2, ., 5, ., 1, ., 8, 4 | 0.72 | 0.8902 | 0.8674 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.5.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GPPS | SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (422 aa) | |||||||||
(Vitis vinifera) | |||||||||||
 | GSVIVG00033429001 | • | • | • | 0.919 | ||||||
 | GSVIVG00025071001 | • | • | 0.916 | |||||||
 | GSVIVG00019758001 | • | • | • | • | 0.915 | |||||
 | GSVIVG00025000001 | • | • | • | • | 0.915 | |||||
 | GSVIVG00014674001 | • | • | • | • | 0.914 | |||||
 | GSVIVG00036188001 | • | • | • | • | 0.914 | |||||
 | GSVIVG00027948001 | • | • | • | • | • | 0.908 | ||||
 | GSVIVG00001656001 | • | • | 0.905 | |||||||
 | GSVIVG00036436001 | • | • | 0.900 | |||||||
 | GSVIVG00027313001 | • | 0.899 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 419 | |||
| PLN02890 | 422 | PLN02890, PLN02890, geranyl diphosphate synthase | 0.0 | |
| TIGR02749 | 322 | TIGR02749, prenyl_cyano, solanesyl diphosphate syn | 1e-100 | |
| PLN02857 | 416 | PLN02857, PLN02857, octaprenyl-diphosphate synthas | 3e-88 | |
| CHL00151 | 323 | CHL00151, preA, prenyl transferase; Reviewed | 3e-87 | |
| cd00685 | 259 | cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat | 9e-78 | |
| COG0142 | 322 | COG0142, IspA, Geranylgeranyl pyrophosphate syntha | 2e-75 | |
| cd00867 | 236 | cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S | 3e-52 | |
| pfam00348 | 260 | pfam00348, polyprenyl_synt, Polyprenyl synthetase | 2e-48 | |
| TIGR02748 | 319 | TIGR02748, GerC3_HepT, heptaprenyl diphosphate syn | 1e-47 | |
| PRK10888 | 323 | PRK10888, PRK10888, octaprenyl diphosphate synthas | 4e-46 | |
| cd00385 | 243 | cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth | 2e-39 | |
| PRK10581 | 299 | PRK10581, PRK10581, geranyltranstransferase; Provi | 6e-17 |
| >gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase | Back alignment and domain information |
|---|
Score = 683 bits (1763), Expect = 0.0
Identities = 322/427 (75%), Positives = 364/427 (85%), Gaps = 13/427 (3%)
Query: 1 MLIYRGLSRISRISKKTSFGRRWLPSHPLLSGASHSAA------AAAADSSVKVLGCREA 54
ML+ R ++RIS + G S AS AA + S+ KV+GCR
Sbjct: 1 MLLSRRVARIS-----ATSGGGRGAYGCSQSLASSRAALLGRHGHPLSQSTSKVVGCRGT 55
Query: 55 YSWSLPALHGIRHQIHHQSSSVIE--LDPFSLVADELSILAKRLRSMVVAEVPKLASAAE 112
YS S LHG ++Q+ HQSSS++E LDPFSLVADELS+LA +LRSMVVAEVPKLASAAE
Sbjct: 56 YSVSSRWLHGFQYQVRHQSSSLVEEQLDPFSLVADELSLLANKLRSMVVAEVPKLASAAE 115
Query: 113 YFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHV 172
YFFK+GVEGKRFRPTVLLLMATALNV +PE GV D +A+ELRTRQQ IAEITEMIHV
Sbjct: 116 YFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNIAEITEMIHV 175
Query: 173 ASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATV 232
ASLLHDDVLDDADTRRG+GSLN VMGNKL+VLAGDFLLSRACVALA+LKNTEVV+LLAT
Sbjct: 176 ASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATA 235
Query: 233 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFD 292
VEHLVTGETMQ+T+S +QR SMDYYMQKTYYKTASLISNSCKA+A+LAGQTAEVA+LAF+
Sbjct: 236 VEHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFE 295
Query: 293 YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGF 352
YG+NLGLA+QLIDDVLDFTGTSASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV++GF
Sbjct: 296 YGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGF 355
Query: 353 EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 412
++ +NVDIALEYLGKSRGIQ+TRELA +HANLAAAAI+SLPE +DEDV SRRAL+DLT
Sbjct: 356 DNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPETDDEDVLTSRRALIDLTE 415
Query: 413 RVITRNK 419
RVITRNK
Sbjct: 416 RVITRNK 422
|
Length = 422 |
| >gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
|---|
| >gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 419 | |||
| PLN02890 | 422 | geranyl diphosphate synthase | 100.0 | |
| TIGR02749 | 322 | prenyl_cyano solanesyl diphosphate synthase. Membe | 100.0 | |
| PLN02857 | 416 | octaprenyl-diphosphate synthase | 100.0 | |
| TIGR02748 | 319 | GerC3_HepT heptaprenyl diphosphate synthase compon | 100.0 | |
| CHL00151 | 323 | preA prenyl transferase; Reviewed | 100.0 | |
| PRK10888 | 323 | octaprenyl diphosphate synthase; Provisional | 100.0 | |
| COG0142 | 322 | IspA Geranylgeranyl pyrophosphate synthase [Coenzy | 100.0 | |
| KOG0776 | 384 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| PRK10581 | 299 | geranyltranstransferase; Provisional | 100.0 | |
| cd00685 | 259 | Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase | 100.0 | |
| PF00348 | 260 | polyprenyl_synt: Polyprenyl synthetase; InterPro: | 100.0 | |
| cd00867 | 236 | Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. | 100.0 | |
| KOG0777 | 322 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| KOG0711 | 347 | consensus Polyprenyl synthetase [Coenzyme transpor | 100.0 | |
| cd00385 | 243 | Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym | 99.92 | |
| PF07307 | 212 | HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE | 97.78 | |
| PF00494 | 267 | SQS_PSY: Squalene/phytoene synthase; InterPro: IPR | 96.74 | |
| TIGR01559 | 336 | squal_synth farnesyl-diphosphate farnesyltransfera | 96.7 | |
| cd00683 | 265 | Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase | 96.46 | |
| PLN02632 | 334 | phytoene synthase | 95.95 | |
| TIGR03465 | 266 | HpnD squalene synthase HpnD. The genes of this fam | 95.75 | |
| TIGR03464 | 266 | HpnC squalene synthase HpnC. This family of genes | 95.3 | |
| cd00687 | 303 | Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl | 91.79 | |
| PRK12884 | 279 | ubiA prenyltransferase; Reviewed | 86.98 | |
| COG1562 | 288 | ERG9 Phytoene/squalene synthetase [Lipid metabolis | 85.12 | |
| cd00868 | 284 | Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp | 83.97 |
| >PLN02890 geranyl diphosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-84 Score=656.21 Aligned_cols=416 Identities=77% Similarity=1.081 Sum_probs=377.2
Q ss_pred ChhhhhhhhhhcccccCcccccccCCCCCCcC----ccchhhhhccCCccccccccccccchhhhhcccccccccccccc
Q 014738 1 MLIYRGLSRISRISKKTSFGRRWLPSHPLLSG----ASHSAAAAAADSSVKVLGCREAYSWSLPALHGIRHQIHHQSSSV 76 (419)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 76 (419)
|+|+|+++||+ +.+++++||+++...+.+ ..+.+++++..+++++++||...+|.+..+|.+.+|++++..+.
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (422)
T PLN02890 1 MLLSRRVARIS---ATSGGGRGAYGCSQSLASSRAALLGRHGHPLSQSTSKVVGCRGTYSVSSRWLHGFQYQVRHQSSSL 77 (422)
T ss_pred CCcchHHHHHh---ccccccccchhhhhhhcccccccCCCCcccccCCCccccccccceeechhhhhhhhhhchhcccch
Confidence 89999999988 888899999998552111 22345667789999999999999999999999999999988777
Q ss_pred cc--CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhH
Q 014738 77 IE--LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALAT 154 (419)
Q Consensus 77 ~~--~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~ 154 (419)
++ .++|+++.++|+.|+++|++.+.+..|.+.+++.|++..|.+|||+||+|++++++++|...++..+.+..+..+.
T Consensus 78 ~~~~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~ 157 (422)
T PLN02890 78 VEEQLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVAS 157 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhcc
Confidence 77 8999999999999999999999999999999999999877779999999999999999864321100000011123
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014738 155 ELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE 234 (419)
Q Consensus 155 ~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~ 234 (419)
+.+++++.+|+++||||+||||||||||++++|||+||+|.+||++.||++||||+++|+..++..+++++++.+++++.
T Consensus 158 ~~~~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~~ 237 (422)
T PLN02890 158 ELRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVE 237 (422)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCc
Q 014738 235 HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 314 (419)
Q Consensus 235 ~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~ 314 (419)
.+++||++|+.+..+...++++|++++++|||+||+++|++||+++|++++..+.+++||+++|+||||+||++||+|++
T Consensus 238 ~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~ 317 (422)
T PLN02890 238 HLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTS 317 (422)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 99999999999887778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 014738 315 ASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 394 (419)
Q Consensus 315 ~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~ 394 (419)
+.+|||.++||++||+|+|+|+|++..+.+..++.+...+++++++++++|.++|++++|+.++++|.++|.++|+.||+
T Consensus 318 ~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~ 397 (422)
T PLN02890 318 ASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPE 397 (422)
T ss_pred hhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988888888888888888999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 014738 395 NNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 395 ~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
+++++|..+|+.|..|++++++|+|
T Consensus 398 s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 398 TDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred CccccchHHHHHHHHHHHHHHhccC
Confidence 9877777789999999999999986
|
|
| >TIGR02749 prenyl_cyano solanesyl diphosphate synthase | Back alignment and domain information |
|---|
| >PLN02857 octaprenyl-diphosphate synthase | Back alignment and domain information |
|---|
| >TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >CHL00151 preA prenyl transferase; Reviewed | Back alignment and domain information |
|---|
| >PRK10888 octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10581 geranyltranstransferase; Provisional | Back alignment and domain information |
|---|
| >cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms | Back alignment and domain information |
|---|
| >cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
|---|
| >KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 | Back alignment and domain information |
|---|
| >PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 | Back alignment and domain information |
|---|
| >TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase | Back alignment and domain information |
|---|
| >cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head | Back alignment and domain information |
|---|
| >PLN02632 phytoene synthase | Back alignment and domain information |
|---|
| >TIGR03465 HpnD squalene synthase HpnD | Back alignment and domain information |
|---|
| >TIGR03464 HpnC squalene synthase HpnC | Back alignment and domain information |
|---|
| >cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >PRK12884 ubiA prenyltransferase; Reviewed | Back alignment and domain information |
|---|
| >COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
| >cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 419 | ||||
| 3apz_A | 348 | Apo Form Of Arabidopsis MediumLONG-Chain Length Pre | 1e-147 | ||
| 3aq0_A | 348 | Ligand-Bound Form Of Arabidopsis MediumLONG-Chain L | 1e-146 | ||
| 3mzv_A | 341 | Crystal Structure Of A Decaprenyl Diphosphate Synth | 5e-30 | ||
| 3aqb_B | 325 | M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphospha | 1e-26 | ||
| 3oyr_A | 345 | Crystal Structure Of Polyprenyl Synthase From Caulo | 2e-26 | ||
| 3lmd_A | 360 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 9e-24 | ||
| 3n3d_A | 335 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 3e-22 | ||
| 3pko_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 4e-22 | ||
| 1vg4_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 9e-22 | ||
| 1v4i_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 1v4e_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 1v4h_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 1wkz_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 1wl0_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 2azl_A | 299 | Crystal Structure For The Mutant F117e Of Thermotog | 2e-21 | ||
| 1vg7_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-21 | ||
| 1vg6_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-21 | ||
| 1v4j_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 4e-21 | ||
| 3tc1_A | 315 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 4e-21 | ||
| 1vg2_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 6e-21 | ||
| 1v4k_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 6e-21 | ||
| 1wl2_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-20 | ||
| 1wl3_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-20 | ||
| 1vg3_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 3e-20 | ||
| 1wy0_A | 342 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 5e-20 | ||
| 3rmg_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 2e-19 | ||
| 1wl1_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-17 | ||
| 3ipi_A | 295 | Crystal Structure Of A Geranyltranstransferase From | 5e-15 | ||
| 3nf2_A | 352 | Crystal Structure Of Polyprenyl Synthetase From Str | 5e-14 | ||
| 3kra_A | 295 | Mint Heterotetrameric Geranyl Pyrophosphate Synthas | 1e-13 | ||
| 4dhd_A | 358 | Crystal Structure Of Isoprenoid Synthase A3msh1 (Ta | 3e-13 | ||
| 3uca_A | 324 | Crystal Structure Of Isoprenoid Synthase (Target Ef | 3e-12 | ||
| 4f62_A | 317 | Crystal Structure Of A Putative Farnesyl-Diphosphat | 4e-11 | ||
| 2ftz_A | 284 | Crystal Structure Of Geranyltranstransferase (Ec 2. | 6e-11 | ||
| 3npk_A | 291 | The Crystal Structure Of Geranyltranstransferase Fr | 9e-11 | ||
| 3p8l_A | 302 | Crystal Structure Of Polyprenyl Synthase From Enter | 2e-10 | ||
| 3lom_A | 313 | Crystal Structure Of Geranyltransferase From Legion | 3e-10 | ||
| 2j1p_A | 293 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 8e-10 | ||
| 3m9u_A | 309 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 1e-08 | ||
| 1rqi_A | 300 | Active Conformation Of Farnesyl Pyrophosphate Synth | 1e-08 | ||
| 1rqj_A | 299 | Active Conformation Of Farnesyl Pyrophosphate Synth | 2e-08 | ||
| 2for_A | 323 | Crystal Structure Of The Shigella Flexneri Farnesyl | 2e-08 | ||
| 3p8r_A | 302 | Crystal Structure Of Polyprenyl Synthase From Vibri | 2e-08 | ||
| 1rtr_A | 301 | Crystal Structure Of S. Aureus Farnesyl Pyrophospha | 2e-08 | ||
| 3lk5_A | 380 | Crystal Structure Of Putative Geranylgeranyl Pyroph | 2e-08 | ||
| 3lvs_A | 298 | Crystal Structure Of Farnesyl Diphosphate Synthase | 7e-08 | ||
| 4fp4_A | 285 | Crystal Structure Of Isoprenoid Synthase A3mx09 (Ta | 1e-07 | ||
| 2azk_A | 289 | Crystal Structure For The Mutant W136e Of Sulfolobu | 2e-07 | ||
| 2q80_A | 301 | Crystal Structure Of Human Geranylgeranyl Pyrophosp | 3e-07 | ||
| 2j1o_A | 268 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 1e-06 | ||
| 2azj_A | 289 | Crystal Structure For The Mutant D81c Of Sulfolobus | 2e-06 | ||
| 2h8o_A | 335 | The 1.6a Crystal Structure Of The Geranyltransferas | 5e-06 | ||
| 1wmw_A | 330 | Crystal Structure Of Geranulgeranyl Diphosphate Syn | 2e-05 | ||
| 3q1o_A | 310 | Crystal Structure Of Geranyltransferase From Helico | 3e-05 | ||
| 3llw_A | 311 | Crystal Structure Of Geranyltransferase From Helico | 3e-05 | ||
| 3lji_A | 304 | Crystal Structure Of Putative Geranyltranstransfera | 7e-05 | ||
| 2dh4_A | 340 | Geranylgeranyl Pyrophosphate Synthase Length = 340 | 7e-05 | ||
| 3p41_A | 303 | Crystal Structure Of Polyprenyl Synthetase From Pse | 8e-05 | ||
| 3ts7_A | 324 | Crystal Structure Of Farnesyl Diphosphate Synthase | 3e-04 | ||
| 3m0g_A | 297 | Crystal Structure Of Putative Farnesyl Diphosphate | 8e-04 |
| >pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase Length = 348 | Back alignment and structure |
|
| >pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase (Surface Polar Residue Mutant) Length = 348 | Back alignment and structure |
| >pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 | Back alignment and structure |
| >pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate Synthase In Complex With Magnesium Length = 325 | Back alignment and structure |
| >pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 | Back alignment and structure |
| >pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Atcc 13032 Length = 360 | Back alignment and structure |
| >pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 335 | Back alignment and structure |
| >pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Complexed With Citrate Length = 334 | Back alignment and structure |
| >pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132a Mutant Length = 299 | Back alignment and structure |
| >pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima Length = 299 | Back alignment and structure |
| >pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F52a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima K41a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R44a Mutant Length = 299 | Back alignment and structure |
| >pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga Maritima Octaprenyl Pyrophosphate Synthase Length = 299 | Back alignment and structure |
| >pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123AD62A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima V73y Mutant Length = 299 | Back alignment and structure |
| >pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori Length = 315 | Back alignment and structure |
| >pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76y Mutant Length = 299 | Back alignment and structure |
| >pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima S77f Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R90a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R91a Mutant Length = 299 | Back alignment and structure |
| >pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76yS77F MUTANT Length = 299 | Back alignment and structure |
| >pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 | Back alignment and structure |
| >pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Bacteroides Thetaiotaomicron Length = 334 | Back alignment and structure |
| >pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima H74a Mutant Length = 299 | Back alignment and structure |
| >pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The Methanosarcina Mazei Length = 295 | Back alignment and structure |
| >pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Streptomyces Coelicolor A3(2) Length = 352 | Back alignment and structure |
| >pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 295 | Back alignment and structure |
| >pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target Efi-501992) From Pyrobaculum Calidifontis Length = 358 | Back alignment and structure |
| >pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target Efi-501974) From Clostridium Perfringens Length = 324 | Back alignment and structure |
| >pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate Synthase From Marinomonas Sp. Med121 (Target Efi-501980) Length = 317 | Back alignment and structure |
| >pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10) (Tm0161) From Thermotoga Maritima At 1.90 A Resolution Length = 284 | Back alignment and structure |
| >pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From Campylobacter Jejuni Length = 291 | Back alignment and structure |
| >pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus Faecalis V583 Length = 302 | Back alignment and structure |
| >pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella Pneumophila Length = 313 | Back alignment and structure |
| >pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In Complex With Ggpp Length = 293 | Back alignment and structure |
| >pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 309 | Back alignment and structure |
| >pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Dimethylallyl S- Thiolodiphosphate Length = 300 | Back alignment and structure |
| >pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299 | Back alignment and structure |
| >pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl Pyrophosphate Synthase Complex With An Isopentenyl Pyrophosphate Length = 323 | Back alignment and structure |
| >pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio Cholerae Length = 302 | Back alignment and structure |
| >pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate Synthase Length = 301 | Back alignment and structure |
| >pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Length = 380 | Back alignment and structure |
| >pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Sb1003 Length = 298 | Back alignment and structure |
| >pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target Efi-501993) From Pyrobaculum Calidifontis Length = 285 | Back alignment and structure |
| >pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 | Back alignment and structure |
| >pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate Synthase Bound To Ggpp Length = 301 | Back alignment and structure |
| >pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba Length = 268 | Back alignment and structure |
| >pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 | Back alignment and structure |
| >pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From Agrobacterium Tumefaciens Length = 335 | Back alignment and structure |
| >pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase From Thermus Thermophilus Length = 330 | Back alignment and structure |
| >pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori Complexed With Magnesium And Isoprenyl Diphosphate Length = 310 | Back alignment and structure |
| >pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori 26695 Length = 311 | Back alignment and structure |
| >pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From Pseudomonas Fluorescens Pf-5 Length = 304 | Back alignment and structure |
| >pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase Length = 340 | Back alignment and structure |
| >pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Pseudomonas Fluorescens Pf-5 Complexed With Magnesium And Isoprenyl Pyrophosphate Length = 303 | Back alignment and structure |
| >pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target Efi-501951) From Methylococcus Capsulatus Length = 324 | Back alignment and structure |
| >pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 297 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 | Back alignment and structure |
|---|
Score = 450 bits (1160), Expect = e-159
Identities = 275/342 (80%), Positives = 313/342 (91%)
Query: 78 ELDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALN 137
ELDPFSLVADELS+L+ +LR MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATAL+
Sbjct: 7 ELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALD 66
Query: 138 VRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVM 197
VRVPE L D + +ELR RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN VM
Sbjct: 67 VRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVM 126
Query: 198 GNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYY 257
GNK++VLAGDFLLSRAC ALA+LKNTEVV LLAT VEHLVTGETM++T+S++QR SMDYY
Sbjct: 127 GNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYY 186
Query: 258 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 317
MQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSASL
Sbjct: 187 MQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASL 246
Query: 318 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTREL 377
GKGSLSDIRHG+ITAPILFAMEEFPQLR VV+Q +D NVDIALEYLGKS+GIQ+ REL
Sbjct: 247 GKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRAREL 306
Query: 378 AVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419
A++HANLAAAAI SLPE ++EDV +SRRAL+DLTHRVITRNK
Sbjct: 307 AMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 | Back alignment and structure |
|---|
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 | Back alignment and structure |
|---|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 | Back alignment and structure |
|---|
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 | Back alignment and structure |
|---|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 | Back alignment and structure |
|---|
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Length = 273 | Back alignment and structure |
|---|
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Length = 293 | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Length = 274 | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Length = 284 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 419 | |||
| 3oyr_A | 345 | Trans-isoprenyl diphosphate synthase; isoprenyl sy | 100.0 | |
| 3mzv_A | 341 | Decaprenyl diphosphate synthase; transferase, stru | 100.0 | |
| 3apz_A | 348 | Geranyl diphosphate synthase; prenyltransferase, a | 100.0 | |
| 3rmg_A | 334 | Octaprenyl-diphosphate synthase; structural genomi | 100.0 | |
| 3pko_A | 334 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 3lmd_A | 360 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 3nf2_A | 352 | Putative polyprenyl synthetase; isoprenyl diphosph | 100.0 | |
| 1wy0_A | 342 | Geranylgeranyl pyrophosphate synthetase; pyrococcu | 100.0 | |
| 3aqb_B | 325 | Component B of hexaprenyl diphosphate synthase; pr | 100.0 | |
| 4dhd_A | 358 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 1wmw_A | 330 | Geranylgeranyl diphosphate synthetase; GGPP, preny | 100.0 | |
| 1v4e_A | 299 | Octoprenyl-diphosphate synthase; trans-type prenyl | 100.0 | |
| 3lk5_A | 380 | Geranylgeranyl pyrophosphate synthase; structural | 100.0 | |
| 3tc1_A | 315 | Octaprenyl pyrophosphate synthase; all alpha-helic | 100.0 | |
| 2e8v_A | 340 | Geranylgeranyl pyrophosphate synthetase; prenyltra | 100.0 | |
| 2q80_A | 301 | Geranylgeranyl pyrophosphate synthetase; isoprenoi | 100.0 | |
| 3uca_A | 324 | Geranyltranstransferase; isoprenoid synthesis, iso | 100.0 | |
| 4f62_A | 317 | Geranyltranstransferase; enzyme function initiativ | 100.0 | |
| 3ts7_A | 324 | Geranyltranstransferase; isoprenoid synthesis, far | 100.0 | |
| 1yhl_A | 362 | Farnesyl pyrophosphate synthase; farnesyl diphosph | 100.0 | |
| 1rqj_A | 299 | Geranyltranstransferase; bisphosphonate, isoprenyl | 100.0 | |
| 1rtr_A | 301 | Geranyltranstransferase; 2.50A {Staphylococcus aur | 100.0 | |
| 3lsn_A | 304 | Geranyltranstransferase; structural genomics, prot | 100.0 | |
| 2h8o_A | 335 | Geranyltranstransferase; geranyltransferase,agroba | 100.0 | |
| 3p8l_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 3p8r_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 2qis_A | 374 | Farnesyl pyrophosphate synthetase; trans-prenyltra | 100.0 | |
| 1uby_A | 367 | FPS, farnesyl diphosphate synthase; transferase, i | 100.0 | |
| 3m0g_A | 297 | Farnesyl diphosphate synthase; structural genomics | 100.0 | |
| 3dyh_A | 390 | Farnesyl pyrophosphate synthase; protein-bisphosph | 100.0 | |
| 3pde_A | 309 | Farnesyl-diphosphate synthase; isoprenyl diphospha | 100.0 | |
| 3lom_A | 313 | Geranyltranstransferase; geranyltransferase, struc | 100.0 | |
| 2ihi_A | 395 | Pyrophosphate synthase; PV092040, structural genom | 100.0 | |
| 3ipi_A | 295 | Geranyltranstransferase; isoprene biosynthesis, he | 100.0 | |
| 2ftz_A | 284 | Geranyltranstransferase; TM0161, structural GE joi | 100.0 | |
| 3mav_A | 395 | Farnesyl pyrophosphate synthase; PV092040, structu | 100.0 | |
| 2her_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 3llw_A | 311 | Geranyltranstransferase (ISPA); structural genomic | 100.0 | |
| 3npk_A | 291 | Geranyltranstransferase; isoprene biosynthesis, SG | 100.0 | |
| 2azj_A | 289 | Geranylgeranyl pyrophosphate synthetase; hexpps, t | 100.0 | |
| 2j1p_A | 293 | Geranylgeranyl pyrophosphate synthetase; transfera | 100.0 | |
| 2q58_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 4fp4_A | 285 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 3kra_B | 274 | Geranyl diphosphate synthase small subunit; prenyl | 100.0 | |
| 3qkc_B | 273 | Geranyl diphosphate synthase small subunit; struct | 100.0 | |
| 4hd1_A | 294 | Squalene synthase HPNC; MCSG, structural genomics, | 96.3 | |
| 3acx_A | 293 | Dehydrosqualene synthase; CRTM, carotenoid biosynt | 94.94 | |
| 3vj8_A | 343 | Squalene synthase; farnesyl-diphosphate farnesyltr | 94.39 | |
| 3kb9_A | 382 | EPI-isozizaene synthase; terpenoid cyclase, alpha- | 81.67 |
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-72 Score=559.92 Aligned_cols=315 Identities=30% Similarity=0.432 Sum_probs=265.3
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
.+++.++.++++.|+..|++.+.+.+|.+.++++|++..| |||+||+|++++++++|++.+
T Consensus 25 ~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~----------------- 85 (345)
T 3oyr_A 25 DRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND----------------- 85 (345)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------
Confidence 4567789999999999999999999999999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 238 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 238 (419)
.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..++++++.+++++..+++
T Consensus 86 ~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 165 (345)
T 3oyr_A 86 HFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAE 165 (345)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccC
Q 014738 239 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 318 (419)
Q Consensus 239 Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~G 318 (419)
||.+|+.+..+...++++|++++++|||+||++||++|++++|.+++..+.+++||.++|+||||+||++||+++++.+|
T Consensus 166 GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~G 245 (345)
T 3oyr_A 166 GEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLG 245 (345)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcC
Confidence 99999999887789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhC-chHHHHH----HcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 014738 319 KGSLSDIRHGIITAPILFAMEEF-PQLRTVV----EQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 393 (419)
Q Consensus 319 K~~~~Dl~~gk~TlPll~Al~~~-~~~~~~l----~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 393 (419)
||.|+||++||+|+|++++++.. +..++.+ .+...+++++++++++|.++|++++|+.++++|.++|.+.|+.||
T Consensus 246 K~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp 325 (345)
T 3oyr_A 246 KNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFP 325 (345)
T ss_dssp -----------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSC
T ss_pred CCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999874 3434443 333345678999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhcc
Q 014738 394 ENNDEDVTKSRRALLDLTHRVITRN 418 (419)
Q Consensus 394 ~~~~~~~~~~r~~L~~L~~~v~~R~ 418 (419)
+++ +|+.|.+|++++++|+
T Consensus 326 ~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 326 AND------WREALEELADFAVSRR 344 (345)
T ss_dssp SSH------HHHHHHHHHHHHHHC-
T ss_pred CcH------HHHHHHHHHHHHHhcc
Confidence 988 9999999999999996
|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} | Back alignment and structure |
|---|
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* | Back alignment and structure |
|---|
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A | Back alignment and structure |
|---|
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* | Back alignment and structure |
|---|
| >2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} | Back alignment and structure |
|---|
| >4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... | Back alignment and structure |
|---|
| >3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* | Back alignment and structure |
|---|
| >3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 419 | ||||
| d2q80a1 | 291 | a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s | 6e-30 | |
| d1v4ea_ | 280 | a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th | 2e-24 | |
| d1rqja_ | 299 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 3e-24 | |
| d1fpsa_ | 348 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 1e-23 | |
| d1rtra_ | 290 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 2e-17 |
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Geranylgeranyl pyrophosphate synthetase species: Human (Homo sapiens) [TaxId: 9606]
Score = 115 bits (288), Expect = 6e-30
Identities = 60/312 (19%), Positives = 110/312 (35%), Gaps = 33/312 (10%)
Query: 107 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 166
L +Y ++ GK+ R + L V + Q I E+
Sbjct: 7 LLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVP-----------------EDKLQIIIEV 47
Query: 167 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 226
TEM+H ASLL DD+ D++ RRG + + G + + +++ + +L + + V
Sbjct: 48 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAV 107
Query: 227 TLLATV-VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 285
L +E + + + Y KT L + + L + +
Sbjct: 108 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKED 167
Query: 286 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME---EFP 342
+ LGL +Q+ DD + S K D+ G + P + A+ E
Sbjct: 168 L----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPEST 223
Query: 343 QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTK 402
Q++ ++ Q E+ + YL + TR + A ID+ N
Sbjct: 224 QVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGN------P 277
Query: 403 SRRALLDLTHRV 414
AL+ ++
Sbjct: 278 ELVALVKHLSKM 289
|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 | Back information, alignment and structure |
|---|
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 | Back information, alignment and structure |
|---|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 348 | Back information, alignment and structure |
|---|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Length = 290 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 419 | |||
| d2q80a1 | 291 | Geranylgeranyl pyrophosphate synthetase {Human (Ho | 100.0 | |
| d1fpsa_ | 348 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1v4ea_ | 280 | Octoprenyl-diphosphate synthase {Thermotoga mariti | 100.0 | |
| d1rqja_ | 299 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1rtra_ | 290 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1ezfa_ | 333 | Squalene synthase {Human (Homo sapiens) [TaxId: 96 | 96.48 |
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Geranylgeranyl pyrophosphate synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-63 Score=483.52 Aligned_cols=277 Identities=22% Similarity=0.283 Sum_probs=248.8
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014738 105 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 184 (419)
Q Consensus 105 p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 184 (419)
+.|.++++|.+..| |||+||.|++++++++|++. +.+..+|+++||||+||||||||+|++
T Consensus 5 ~~l~e~~~y~~~~g--GKr~Rp~l~~~~~~~~~~~~-----------------~~~~~~a~aiEllH~asLihDDi~D~~ 65 (291)
T d2q80a1 5 RILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASLLIDDIEDNS 65 (291)
T ss_dssp HHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 45778899999988 99999999999999998752 367889999999999999999999999
Q ss_pred CCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCHHHHHHHHhh
Q 014738 185 DTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYY 263 (419)
Q Consensus 185 ~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~~~yl~~i~~ 263 (419)
++|||+||+|.+||++.|||+||||++.|+..++...++.++..+++++..+++||.+|+.+..+. ..++++|++++.+
T Consensus 66 ~~RRg~pt~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~~~~~s~~~y~~ii~~ 145 (291)
T d2q80a1 66 KLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQ 145 (291)
T ss_dssp SEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ccccCCCccccccchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhHhccccccccccccccCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998775443 4689999999999
Q ss_pred hhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhhCc-
Q 014738 264 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP- 342 (419)
Q Consensus 264 KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~- 342 (419)
|||+||++||.+|++++|.+++ +++||+++|+||||+||++||+++++.+|||.|+||++||+|||+++|++..+
T Consensus 146 KT~~Lf~~~~~~ga~~~~~~~~----l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~al~~~~~ 221 (291)
T d2q80a1 146 KTGGLFGLAVGLMQLFSDYKED----LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPE 221 (291)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSC----CHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTT
T ss_pred ccchhhHhhhhhhhhhcccchh----hHHHHHHHHHHHHHHHHhhhhccchhhccccccchhccCCCcHHHHHHHHhccc
Confidence 9999999999999999998754 78899999999999999999999999999999999999999999999998654
Q ss_pred --hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 014738 343 --QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 410 (419)
Q Consensus 343 --~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~L 410 (419)
.+.+++.+...+.+.+++++++|.++|++++|++.+++|.++|.+.|+.+|+++ .+++|.+.
T Consensus 222 ~~~l~~il~~~~~~~~~~~~i~~~l~~~ga~~~a~~~~~~~~~~A~~~L~~l~~~~------~~~~L~~~ 285 (291)
T d2q80a1 222 STQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP------ELVALVKH 285 (291)
T ss_dssp CCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH------HHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCH------HHHHHHHH
Confidence 567788877788889999999999999999999999999999999999999988 66666543
|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|