Citrus Sinensis ID: 014768

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSRMY
Secondary Structure (PSIPRED)
ccccccEEEEcccHHHHHHHHHHHHcccEEEcccccccccccccEEEHHHHHHHHccccccccccccccccEEccccccHHccccEEEEEEEccccEEEEEEEEccEEEEEccEEEcccccHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHcccEEEEcccccEEEEcccccEEEEcccccEEEEcEEEEcccccccccccccEEEEEEEEcccccccccccccEEEEcccccccccccEEEEEEcccccccccccEEEEEEEEccccccccccHHHHHHccccccEEEEcccccccccccccccEEEEccccccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccHHHHHHHHHHHHccccEEEEccccccHHHcEEccHHHHHHHccccccccHHHccHHHccEEccccEEEcccHHHHHHHHHcHHHHccEEEccEEEEEEccEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHcccccccccEHHHHHHHccccHHHHHHHHHHcccccccHHHHcEHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHcccccEccccccEEEEcEccEEEEEEEccEEEEEEEEEEcHHHcHHHEEEEEEEEEEEEEEccccccccccccEEEEEcHHHHcccccEEEEEEEHHHcccccccEEEEEEEEcccccHHHHcHHHHcccccccEEEEEEEEEEEEccccccccEEEccccccccccHHHHHHHc
Coil and Loop (DISEMBL)
MDEEYDVIVLGTGLKECIlsgllsvdglkvlhmdrndyyggesssLNLIQLWKRfrgneqppahlgssrdynvdmiPKFIIANGALVRVLIHTDVTKYLYfkavdgsfvynkgkvhkvpatdmealksPLMGIFEKRRARKFFIYVqdydendpkthegmdltRVTTRELIAkyglddntiDFIGHALalhrddrylnepaldTVKRMKLYAESIARfqggspyiyplyglgelPQAFARLSAVYggtymlnkpeckvefdeegkvvgvtsegetakckkvvcdpsylpnkvrkVGRVARAIAImshpipntndshsvqvilpqkqlgrrsdmylfccsyshnvapkgkFIAFVSTeaetdhpqtelkpgidllgpvdeifydiydryepvnepsldncfistvtmmpqhtLSQLSRMY
Flexible Loop (DISEMBL)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKvhkvpatdmealksPLMGIFEKRRARKFFIYvqdydendpkthegmdltrVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVgvtsegetakckkvvcdpsylpnkvrKVGRVARAIAIMShpipntndshsvQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETdhpqtelkpgidllgPVDEIFYDIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSRMY
Low Complexity Region (SEG)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSRMY
Disordered region (IsUnstruct)
****YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG***********RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN****HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEA*******ELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTVTM*************
Disordered Region (DISOPRED)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEA******TELKPGIDLLGPVDEIFYDIYDRYEP*NEPSLDNCFISTVTMMPQHTLSQLSRMY
Disordered Region (DISEMBL)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTE********ELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSRMY
Disordered Region (DISPRO)
*DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSRMY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSRMY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	419	2.2.26 [Sep-21-2011]
P50398	447	Rab GDP dissociation inhi	yes	no	0.954	0.894	0.600	1e-144
P21856	447	Rab GDP dissociation inhi	yes	no	0.954	0.894	0.600	1e-143
O97555	447	Rab GDP dissociation inhi	yes	no	0.954	0.894	0.598	1e-143
P50396	447	Rab GDP dissociation inhi	yes	no	0.954	0.894	0.598	1e-143
P60028	447	Rab GDP dissociation inhi	yes	no	0.954	0.894	0.600	1e-143
P31150	447	Rab GDP dissociation inhi	yes	no	0.954	0.894	0.600	1e-143
Q8HXX7	447	Rab GDP dissociation inhi	N/A	no	0.954	0.894	0.598	1e-143
Q7YQM0	447	Rab GDP dissociation inhi	N/A	no	0.954	0.894	0.598	1e-143
P50399	445	Rab GDP dissociation inhi	no	no	0.954	0.898	0.570	1e-138
Q61598	445	Rab GDP dissociation inhi	no	no	0.954	0.898	0.570	1e-138

>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1

 Score =  510 bits (1313), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 318/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct: 359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Rattus norvegicus (taxid: 10116)

>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1

 Score =  509 bits (1312), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 318/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1

 Score =  509 bits (1311), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/403 (59%), Positives = 318/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y  GK++KVP
Sbjct: 61  GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct: 359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Canis familiaris (taxid: 9615)

>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3

 Score =  509 bits (1310), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/403 (59%), Positives = 318/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct: 359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1

 Score =  508 bits (1309), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 317/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++      F S
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pan troglodytes (taxid: 9598)

>sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2

 Score =  508 bits (1309), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 317/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++      F S
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1

 Score =  508 bits (1308), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/403 (59%), Positives = 317/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++      F S
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1

 Score =  508 bits (1308), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/403 (59%), Positives = 317/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++      F S
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pongo pygmaeus (taxid: 9600)

>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2

 Score =  491 bits (1263), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/403 (57%), Positives = 315/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  L  L+KRF+   
Sbjct: 1   MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
           QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP
Sbjct: 61  QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GH+LAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V 
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  E
Sbjct: 299 RVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+++ F  I D + P +  +    FIS
Sbjct: 359 TKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFIS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1

 Score =  491 bits (1263), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/403 (57%), Positives = 315/403 (78%), Gaps = 3/403 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  L  L+KRF+   
Sbjct: 1   MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
           QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP
Sbjct: 61  QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GH+LAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V 
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  E
Sbjct: 299 RVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVE 358

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+++ F  I D + P +  +    FIS
Sbjct: 359 TKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFIS 401

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
224117826	444	predicted protein [Populus trichocarpa]	1.0	0.943	0.905	0.0
255545283	444	protein with unknown function [Ricinus c	1.0	0.943	0.902	0.0
156972239	444	GDP-dissociation inhibitor [Lupinus albu	0.961	0.907	0.935	0.0
2501850	444	GDP dissociation inhibitor [Nicotiana ta	0.961	0.907	0.930	0.0
225434259	444	PREDICTED: rab GDP dissociation inhibito	1.0	0.943	0.898	0.0
224095286	444	predicted protein [Populus trichocarpa]	1.0	0.943	0.900	0.0
82623395	444	GDP dissociation inhibitor 1-like [Solan	1.0	0.943	0.893	0.0
224815412	444	Rab GDP dissociation inhibitor [Nicotian	0.961	0.907	0.923	0.0
449442357	444	PREDICTED: rab GDP dissociation inhibito	0.959	0.905	0.917	0.0
3175990	444	GDP dissociation inhibitor [Cicer arieti	0.961	0.907	0.918	0.0

>gi|224117826|ref|XP_002331641.1| predicted protein [Populus trichocarpa] gi|118484203|gb|ABK93982.1| unknown [Populus trichocarpa] gi|118487234|gb|ABK95445.1| unknown [Populus trichocarpa] gi|222874037|gb|EEF11168.1| predicted protein [Populus trichocarpa]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/422 (90%), Positives = 407/422 (96%), Gaps = 3/422 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRGN++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESASLNLIQLWKRFRGNDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYLYFKAVDG +V+NKGKVHKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGNLVRVLIHTDVTKYLYFKAVDGGYVFNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMG+FEKRRARKFFIYVQ+Y+++DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGLFEKRRARKFFIYVQNYEDSDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALHRDDRYLNEPALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEF+EEGKV GVTSEGETAKCKKVVCDPSYLPNK RKVGRVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFNEEGKVAGVTSEGETAKCKKVVCDPSYLPNKARKVGRVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AIAIMSHPIP+T++SHSVQVILPQKQLGRRSDMYLFCCSY+HNVAPKGKFIAFVSTEAET
Sbjct: 301 AIAIMSHPIPSTDESHSVQVILPQKQLGRRSDMYLFCCSYTHNVAPKGKFIAFVSTEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST---VTMMPQHTLSQLSR 417
           DHP++ELKPGIDLLGPVDEIF+DIYDRYEPVNEPSLDNCFIST    T   + T++ +  
Sbjct: 361 DHPESELKPGIDLLGPVDEIFFDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLN 420

Query: 418 MY 419
           MY
Sbjct: 421 MY 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545283|ref|XP_002513702.1| protein with unknown function [Ricinus communis] gi|223547153|gb|EEF48649.1| protein with unknown function [Ricinus communis]

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/422 (90%), Positives = 404/422 (95%), Gaps = 3/422 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMD+NDYYGGES+SLNL QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDKNDYYGGESASLNLNQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGNLVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL+EPALDTV RMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 MDFIGHALALHRDDRYLDEPALDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK RKV RVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKARKVSRVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AIAIMSHPIPNTNDSHS QVILPQKQLGRRSDMYLFCCSYSHNVAPKGK+IAFVS+EAET
Sbjct: 301 AIAIMSHPIPNTNDSHSAQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKYIAFVSSEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST---VTMMPQHTLSQLSR 417
           D+P+ ELKPGIDLLGPVDEIF+++YDRYEPVNEPSLDNCFIST    T   + T++ +  
Sbjct: 361 DNPEVELKPGIDLLGPVDEIFFEVYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLN 420

Query: 418 MY 419
           MY
Sbjct: 421 MY 422

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156972239|gb|ABU98948.1| GDP-dissociation inhibitor [Lupinus albus]

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/403 (93%), Positives = 393/403 (97%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGL ECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLXECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLIQLWKRFRGDDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PP HLGSSRDYNVDM+PKF++ANG LVRVLIHTDVTKYLYFKAVDGSFV+NKGKVHKVPA
Sbjct: 61  PPPHLGSSRDYNVDMVPKFMMANGTLVRVLIHTDVTKYLYFKAVDGSFVFNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDYDE+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHA+ALHRDDRYLNEPALDTVKRMKLYAES+ARFQGGS YIYPLYGLGELPQ F R
Sbjct: 181 IDFIGHAIALHRDDRYLNEPALDTVKRMKLYAESLARFQGGSSYIYPLYGLGELPQGFVR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKV+FDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVKFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AI IMSHPIPNTNDSHS QVILPQKQLGR+SDMYLFCCSYSHNVAPKGKFIAFVS EAET
Sbjct: 301 AIVIMSHPIPNTNDSHSAQVILPQKQLGRKSDMYLFCCSYSHNVAPKGKFIAFVSAEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST 403
            HP++ELKPGIDLLGPVDEIFYDIYDRYEPVNEP+LDNCFIST
Sbjct: 361 GHPESELKPGIDLLGPVDEIFYDIYDRYEPVNEPTLDNCFIST 403

Source: Lupinus albus

Species: Lupinus albus

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2501850|gb|AAB80717.1| GDP dissociation inhibitor [Nicotiana tabacum]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/403 (93%), Positives = 397/403 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRD+NVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAELGSSRDFNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL+EPA DTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLDEPAQDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYLPNKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETAKCKKVVCDPSYLPNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AIAIMSHPIPNTNDSHSVQ+ILPQKQLGR+SDMYLFCCSY+HNVAPKGKFIAFVSTEAET
Sbjct: 301 AIAIMSHPIPNTNDSHSVQIILPQKQLGRKSDMYLFCCSYTHNVAPKGKFIAFVSTEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST 403
           D+P++ELK G++LLGPVDEIFY+ YDR EPVNEPSLDNCFIST
Sbjct: 361 DNPESELKQGVNLLGPVDEIFYETYDRSEPVNEPSLDNCFIST 403

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434259|ref|XP_002280606.1| PREDICTED: rab GDP dissociation inhibitor alpha [Vitis vinifera] gi|147840053|emb|CAN70679.1| hypothetical protein VITISV_044153 [Vitis vinifera] gi|296084382|emb|CBI24770.3| unnamed protein product [Vitis vinifera]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/422 (89%), Positives = 403/422 (95%), Gaps = 3/422 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRF+GN++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFKGNDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYLYFKAVDGS+V+NKGKVHKVPA
Sbjct: 61  PPASLGSSRDYNVDMIPKFMMANGTLVRVLIHTDVTKYLYFKAVDGSYVFNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
            D+EALKSPLMG+FEKRRARKFFI+VQDYDENDP+THEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 NDVEALKSPLMGLFEKRRARKFFIFVQDYDENDPRTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHA+ALHRDD YLNEPA+DTVKRMKLY+ESIARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHAIALHRDDCYLNEPAIDTVKRMKLYSESIARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFDEEGK VGVTSEGETA+CKKVVCDPSYLPNKVRKVGRVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKAVGVTSEGETARCKKVVCDPSYLPNKVRKVGRVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AI IMSHPIPNT+DSHSVQVILPQKQLGR+SDMYLFCCSYSHNVAPKGKFIAFVSTEAET
Sbjct: 301 AICIMSHPIPNTSDSHSVQVILPQKQLGRKSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST---VTMMPQHTLSQLSR 417
           DHP++ELKPGIDLLGPVDEIFYDIY+R+EPVNEPSLD CFIST    T   + T+  +  
Sbjct: 361 DHPESELKPGIDLLGPVDEIFYDIYERFEPVNEPSLDQCFISTSYDATTHFESTVMDVLN 420

Query: 418 MY 419
           MY
Sbjct: 421 MY 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095286|ref|XP_002310371.1| predicted protein [Populus trichocarpa] gi|222853274|gb|EEE90821.1| predicted protein [Populus trichocarpa]

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/422 (90%), Positives = 402/422 (95%), Gaps = 3/422 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRGN++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESASLNLIQLWKRFRGNDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHT+VTKYLYFKAVDGSFV NKGKVHKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGNLVRVLIHTNVTKYLYFKAVDGSFVLNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARK FIYV +Y+E+DPKTHEGMDLTRVTTRELIAK+GLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKLFIYVHNYEESDPKTHEGMDLTRVTTRELIAKFGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHA+ALHRDDRYLNEPALDTV RMKLYAES ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHAVALHRDDRYLNEPALDTVMRMKLYAESFARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYL NKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVAGVTSEGETAKCKKVVCDPSYLLNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AIAIMSHPIP+T++SHSVQVILPQKQLGRRSDMYLFCCSY+HNVAPKGKFIAFVSTEAET
Sbjct: 301 AIAIMSHPIPSTDESHSVQVILPQKQLGRRSDMYLFCCSYTHNVAPKGKFIAFVSTEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST---VTMMPQHTLSQLSR 417
           DHP+ ELKPGIDLLGPVDEIF+DIYDRYEPVNEPSLDNCFIST    T   + T++ +  
Sbjct: 361 DHPEVELKPGIDLLGPVDEIFFDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLN 420

Query: 418 MY 419
           MY
Sbjct: 421 MY 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82623395|gb|ABB87112.1| GDP dissociation inhibitor 1-like [Solanum tuberosum]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/422 (89%), Positives = 403/422 (95%), Gaps = 3/422 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRDYNVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAQLGSSRDYNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY E+DPKTHEGMDLTRVT RELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYKESDPKTHEGMDLTRVTARELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL++PALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLDKPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYML+KPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYL NKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLSKPECKVEFDEEGKVCGVTSEGETAKCKKVVCDPSYLNNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AIAIMSHPIPNTNDSHSVQ+ILPQKQLGR+SD+YLFCCSY+HNVAPKGKFIAFVSTEAET
Sbjct: 301 AIAIMSHPIPNTNDSHSVQIILPQKQLGRKSDLYLFCCSYTHNVAPKGKFIAFVSTEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST---VTMMPQHTLSQLSR 417
           D+P++ELKPGIDLLG VDEIF++ YDR+EPVNEPSLDNCFIST    T   + T+  +  
Sbjct: 361 DNPESELKPGIDLLGQVDEIFFEAYDRFEPVNEPSLDNCFISTSYDATTHFESTVDDVLN 420

Query: 418 MY 419
           MY
Sbjct: 421 MY 422

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224815412|gb|ACN65853.1| Rab GDP dissociation inhibitor [Nicotiana benthamiana]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/403 (92%), Positives = 396/403 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRD+NVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKV KVPA
Sbjct: 61  PPAELGSSRDFNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVRKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL+EPA DTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLDEPAQDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYLP+KVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETAKCKKVVCDPSYLPSKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AIAIMSHPIPNTNDSHSVQ+ILPQKQLGR+SDMYLFCCSY+HNVAPKGKFIAFVSTEAET
Sbjct: 301 AIAIMSHPIPNTNDSHSVQIILPQKQLGRKSDMYLFCCSYTHNVAPKGKFIAFVSTEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST 403
           D+P++EL+ G++LLGPVDEIFY+ YDR EPVNEPSLDNCFIST
Sbjct: 361 DNPESELEQGVNLLGPVDEIFYETYDRSEPVNEPSLDNCFIST 403

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442357|ref|XP_004138948.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Cucumis sativus] gi|449522606|ref|XP_004168317.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Cucumis sativus]

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/402 (91%), Positives = 394/402 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGDDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYL FKAVDGS+VYNKGK+HKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGTLVRVLIHTDVTKYLSFKAVDGSYVYNKGKIHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMG+FEKRRARKFFI+VQDYDE++PKTHEGMDL RVTT+ELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGLFEKRRARKFFIFVQDYDESNPKTHEGMDLARVTTKELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALHRDDRYL+ PALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHALALHRDDRYLDLPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFD+EGKV+GVTSEGETAKCKKVVCDPSYL NKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDDEGKVIGVTSEGETAKCKKVVCDPSYLSNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AIAIMSH IPNTNDSHSVQ+I+PQKQLGRRSDMY+FCCSYSHNVAP+GKFIAFV+TEAET
Sbjct: 301 AIAIMSHTIPNTNDSHSVQIIIPQKQLGRRSDMYVFCCSYSHNVAPRGKFIAFVTTEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           DHP++ELKPGIDLLG VDEIF+D YDRYEPVNEPSLDNCFIS
Sbjct: 361 DHPESELKPGIDLLGAVDEIFFDTYDRYEPVNEPSLDNCFIS 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3175990|emb|CAA06731.1| GDP dissociation inhibitor [Cicer arietinum]

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/403 (91%), Positives = 395/403 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLIQLWKRFRGDDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PP HLGSS+DYN+DM PKFI+ANG LVRVLIHTDVTKYLYFKAVDGSFV+NKGKVHKVP+
Sbjct: 61  PPPHLGSSKDYNIDMNPKFIMANGMLVRVLIHTDVTKYLYFKAVDGSFVFNKGKVHKVPS 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
            DMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTH+GMDLTRVTT+ELIAK+GLDDNT
Sbjct: 121 NDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHDGMDLTRVTTKELIAKFGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYLNEPALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLNEPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFD EGKV+GV+SEGETAKCKKVVCDPSYLPNKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDGEGKVLGVSSEGETAKCKKVVCDPSYLPNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
           AIAIMSHPIPNTNDSHSVQVILPQKQLGR+SDMYLFCCSYSHNVAPKGKFIAFVSTEAET
Sbjct: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRKSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360

Query: 361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST 403
           D P  ELKPGIDLLGPVDEIF+D+YDR+EPVNEP+LDNCF+ST
Sbjct: 361 DQPAIELKPGIDLLGPVDEIFFDMYDRFEPVNEPTLDNCFVST 403

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
TAIR|locus:2051839	445	GDI1 "guanosine nucleotide dip	0.961	0.905	0.870	1.2e-193
TAIR|locus:2080527	444	GDI2 "RAB GDP dissociation inh	1.0	0.943	0.831	3.1e-193
TAIR|locus:2144741	445	GDI "RAB GDP-dissociation inhi	0.959	0.903	0.825	1e-185
DICTYBASE|DDB_G0268034	454	DDB_G0268034 "Rab GDP dissocia	0.954	0.881	0.624	2.3e-135
RGD|2676	447	Gdi1 "GDP dissociation inhibit	0.954	0.894	0.600	2.1e-132
UNIPROTKB|P21856	447	GDI1 "Rab GDP dissociation inh	0.954	0.894	0.600	2.7e-132
UNIPROTKB|F1PWQ0	447	GDI1 "Rab GDP dissociation inh	0.954	0.894	0.600	2.7e-132
UNIPROTKB|I3L893	447	GDI1 "Uncharacterized protein"	0.954	0.894	0.602	2.7e-132
UNIPROTKB|O97555	447	GDI1 "Rab GDP dissociation inh	0.954	0.894	0.598	3.4e-132
MGI|MGI:99846	447	Gdi1 "guanosine diphosphate (G	0.954	0.894	0.598	4.4e-132

TAIR|locus:2051839 GDI1 "guanosine nucleotide diphosphate dissociation inhibitor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1876 (665.4 bits), Expect = 1.2e-193, P = 1.2e-193
 Identities = 351/403 (87%), Positives = 383/403 (95%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDEEY+VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL QLWK+FRG E+
Sbjct:     1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60

Query:    61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
              PAHLGSSRDYNVDM+PKF++ANG LVRVLIHTDVTKYL FKAVDGS+V+ +GKV KVPA
Sbjct:    61 APAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPA 120

Query:   121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
             T MEALKSPLMGIFEKRRA KFF YVQ+YDE DPKTH+GMDL RVTT++LIAK+GL ++T
Sbjct:   121 TPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKEDT 180

Query:   181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHA+ALH +D +L++PA DTV RMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
             LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYL NKVRK+GRVAR
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVVCDPSYLTNKVRKIGRVAR 300

Query:   301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
             AIAIMSHPIPNTNDS SVQVILPQKQLGR+SDMY+FCCSYSHNVAPKGKFIAFVST+AET
Sbjct:   301 AIAIMSHPIPNTNDSQSVQVILPQKQLGRKSDMYVFCCSYSHNVAPKGKFIAFVSTDAET 360

Query:   361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST 403
             D+PQTEL+PGIDLLGPVDE+F+DIYDRYEPVNEP+LDNCFIST
Sbjct:   361 DNPQTELQPGIDLLGPVDELFFDIYDRYEPVNEPTLDNCFIST 403

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;IGI

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048227 "plasma membrane to endosome transport" evidence=IGI

TAIR|locus:2080527 GDI2 "RAB GDP dissociation inhibitor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1872 (664.0 bits), Expect = 3.1e-193, P = 3.1e-193
 Identities = 351/422 (83%), Positives = 386/422 (91%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDEEY+VIVLGTGLKECILSGLLSVDG+KVLHMDRNDYYGGES+SLNL QLWK+FRG E+
Sbjct:     1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60

Query:    61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
              P HLG+SRDYNVDM+PKF++ NG LVR LIHTDVTKYL FKAVDGS+V+ KGKV KVPA
Sbjct:    61 APEHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKVPA 120

Query:   121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
             T MEALKS LMGIFEKRRA KFF +VQ+YDE DPKTH+GMDLTRVTT+ELIAKYGLD NT
Sbjct:   121 TPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDLTRVTTKELIAKYGLDGNT 180

Query:   181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHA+ALH +D++L++PA DTV RMKLYAES+ARFQG SPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHAVALHTNDQHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
             LSAVYGGTYMLNKPECKVEFDE GKV+GVTSEGETAKCKK+VCDPSYLPNKVRK+GRVAR
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDEGGKVIGVTSEGETAKCKKIVCDPSYLPNKVRKIGRVAR 300

Query:   301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
             AIAIMSHPIPNTNDSHSVQVI+PQKQL R+SDMY+FCCSYSHNVAPKGKFIAFVST+AET
Sbjct:   301 AIAIMSHPIPNTNDSHSVQVIIPQKQLARKSDMYVFCCSYSHNVAPKGKFIAFVSTDAET 360

Query:   361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTVTMMPQH---TLSQLSR 417
             D+PQTELKPG DLLGPVDEIF+D+YDRYEPVNEP LDNCFIST      H   T++ +  
Sbjct:   361 DNPQTELKPGTDLLGPVDEIFFDMYDRYEPVNEPELDNCFISTSYDATTHFETTVADVLN 420

Query:   418 MY 419
             MY
Sbjct:   421 MY 422

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0051049 "regulation of transport" evidence=RCA

TAIR|locus:2144741 GDI "RAB GDP-dissociation inhibitor" [Arabidopsis thaliana (taxid:3702)]

 Score = 1801 (639.0 bits), Expect = 1.0e-185, P = 1.0e-185
 Identities = 332/402 (82%), Positives = 369/402 (91%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL QLWKRFRG++ 
Sbjct:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLTQLWKRFRGSDT 60

Query:    61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
             P  +LG+SR+YNVDMIPKFI+ANG LV+ LIHTDVTKYL FKAVDGSFVY KGK++KVPA
Sbjct:    61 PEENLGASREYNVDMIPKFIMANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPA 120

Query:   121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
             TD+EALKSPLMG+FEKRRARKFFIYVQDYDE DPK+HEG+DL++VT RE+I+KYGL+D+T
Sbjct:   121 TDVEALKSPLMGLFEKRRARKFFIYVQDYDEKDPKSHEGLDLSKVTAREIISKYGLEDDT 180

Query:   181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHALALH DD YL++PA+D VKR+KLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHALALHNDDDYLDQPAIDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
             LSAVYGGTYMLNKPECKVEFD  GK +GVTS GETAKCKKVVCDPSYL  KV+KVG+V R
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDGSGKAIGVTSAGETAKCKKVVCDPSYLSEKVKKVGKVTR 300

Query:   301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAET 360
             A+ IMSHPIP+TND+HSVQ+ILPQKQLGR+SDMYLFCCSY+HNVAPKGK+IAFVS EAET
Sbjct:   301 AVCIMSHPIPDTNDAHSVQIILPQKQLGRKSDMYLFCCSYAHNVAPKGKYIAFVSAEAET 360

Query:   361 DHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
             D+P+ ELKPGI+LLGP DEIFY  YD Y P N    DNCFIS
Sbjct:   361 DNPEEELKPGIELLGPTDEIFYHSYDTYVPTNIQEEDNCFIS 402

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0048046 "apoplast" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

DICTYBASE|DDB_G0268034 DDB_G0268034 "Rab GDP dissociation inhibitor alpha" [Dictyostelium discoideum (taxid:44689)]

 Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
 Identities = 253/405 (62%), Positives = 320/405 (79%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDE YDVIVLGTGLKECI+SGLLSVDG KVLHMDRN YYGGES+SLN+ QLW++  G E+
Sbjct:     1 MDEHYDVIVLGTGLKECIISGLLSVDGKKVLHMDRNGYYGGESASLNMNQLWEKSHGKEK 60

Query:    61 P-PAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
               P  LGSSRDYNVD+IPKFI+++G LV++L+HTDVT+YL FK VDGS+VY+ GK++KVP
Sbjct:    61 KAPETLGSSRDYNVDLIPKFILSSGLLVKMLLHTDVTRYLDFKVVDGSYVYSSGKINKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE-LIAKYGLDD 178
             +TD EAL S L+G+ +K   RKFFI+VQ+Y+EN+P TH+G++L ++TT + L  KYGL +
Sbjct:   121 STDTEALTSSLVGLLDKLPLRKFFIFVQNYEENNPATHDGLNL-KITTMDALFKKYGLRE 179

Query:   179 NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238
             N +DFIGHALAL+ DD YL +PA DT+ RMKLYA+S+AR+   SPYIYPLYGLGELPQAF
Sbjct:   180 NIVDFIGHALALYLDDSYLQQPAHDTIMRMKLYADSLARYSK-SPYIYPLYGLGELPQAF 238

Query:   239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRV 298
             ARLSA+YGGTYMLNKP   + FDEE K++ VTSEGET  C K+VCDPSY PNKV+K G++
Sbjct:   239 ARLSAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKI 298

Query:   299 ARAIAIMSHPIPNTNDS-HSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTE 357
              R+I I++ PIP+ +    S+Q+I+PQKQ+ R+SDMY+   S +H V PKGK+IA VS  
Sbjct:   299 IRSICILNGPIPSADKKFESLQIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSAT 358

Query:   358 AETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
              ET+ P+ EL P   LLGP+ E F  I D  EP+ + + DN FIS
Sbjct:   359 VETNEPEKELAPAYALLGPIQEKFVYISDFIEPIADGTADNVFIS 403

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

RGD|2676 Gdi1 "GDP dissociation inhibitor 1" [Rattus norvegicus (taxid:10116)]

 Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
 Identities = 242/403 (60%), Positives = 318/403 (78%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
             T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct:   359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IDA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0030496 "midbody" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0050771 "negative regulation of axonogenesis" evidence=IDA

GO:0051592 "response to calcium ion" evidence=IDA

UNIPROTKB|P21856 GDI1 "Rab GDP dissociation inhibitor alpha" [Bos taurus (taxid:9913)]

 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 242/403 (60%), Positives = 318/403 (78%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
             T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct:   359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

GO:0007264 "small GTPase mediated signal transduction" evidence=ISS

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISS;IDA

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0030496 "midbody" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PWQ0 GDI1 "Rab GDP dissociation inhibitor alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 242/403 (60%), Positives = 318/403 (78%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
             T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct:   359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|I3L893 GDI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 243/403 (60%), Positives = 318/403 (78%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
             T  P+ E++P ++LL P+D+ F  I D YEPV++ S    F S
Sbjct:   359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPVDDGSESQVFCS 401

GO:0030496 "midbody" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|O97555 GDI1 "Rab GDP dissociation inhibitor alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 241/403 (59%), Positives = 318/403 (78%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y  GK++KVP
Sbjct:    61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
             T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct:   359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:99846 Gdi1 "guanosine diphosphate (GDP) dissociation inhibitor 1" [Mus musculus (taxid:10090)]

 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 241/403 (59%), Positives = 318/403 (78%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V+K G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
             T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct:   359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0050771 "negative regulation of axonogenesis" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P50398	GDIA_RAT	No assigned EC number	0.6004	0.9546	0.8948	yes	no
P50396	GDIA_MOUSE	No assigned EC number	0.5980	0.9546	0.8948	yes	no
P31150	GDIA_HUMAN	No assigned EC number	0.6004	0.9546	0.8948	yes	no
P39958	GDI1_YEAST	No assigned EC number	0.5245	0.9570	0.8891	yes	no
O97555	GDIA_CANFA	No assigned EC number	0.5980	0.9546	0.8948	yes	no
Q10305	GDI1_SCHPO	No assigned EC number	0.5585	0.9761	0.9295	yes	no
P21856	GDIA_BOVIN	No assigned EC number	0.6004	0.9546	0.8948	yes	no
Q8HXX7	GDIA_MACFA	No assigned EC number	0.5980	0.9546	0.8948	N/A	no
Q7YQM0	GDIA_PONPY	No assigned EC number	0.5980	0.9546	0.8948	N/A	no
P60028	GDIA_PANTR	No assigned EC number	0.6004	0.9546	0.8948	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	419
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	0.0
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	0.0
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	1e-131

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  734 bits (1896), Expect = 0.0
 Identities = 287/404 (71%), Positives = 346/404 (85%), Gaps = 2/404 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE- 59
           MDEEYDVIVLGTGLKECILSGLLSVDG KVLH+DRNDYYGGES+SL+L QL+ RFRG E 
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
           +PP+ LG SRD+NVD+IPKF++ANG LV++LIHTDVT+YL FKAV+GS+VY  GK+HKVP
Sbjct: 61  KPPSKLGRSRDWNVDLIPKFLMANGELVKLLIHTDVTRYLEFKAVEGSYVYKGGKIHKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           A +MEAL SPLMGIFEKRR RKF  YVQDYDE+DPKTH+G+D  + T  E+  K+GLD+N
Sbjct: 121 ANEMEALSSPLMGIFEKRRFRKFLTYVQDYDEDDPKTHDGLDPRKRTMLEVYKKFGLDEN 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
           TIDFIGHALAL+RDD YLN+PAL TV+R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 TIDFIGHALALYRDDDYLNQPALPTVERIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP  ++ +DE GKVVGV S GE A+ K+V+CDPSY P+KVRKVG+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDEIVYDENGKVVGVKSGGEVARAKQVICDPSYFPDKVRKVGQVI 299

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           RAI I+SHPIPNTND+ SVQ+I+PQ Q+GR+SD+Y+ CCSY+HNV PKGK+IA VST  E
Sbjct: 300 RAICILSHPIPNTNDAGSVQIIIPQNQVGRKSDIYISCCSYAHNVCPKGKYIAIVSTTVE 359

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST 403
           T++P++EL PG+DLLGP+DE F  I D YEP ++ S D  FIS 
Sbjct: 360 TENPESELAPGLDLLGPIDEKFVKISDLYEPTDDGSEDQIFISQ 403

Length = 439

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  680 bits (1756), Expect = 0.0
 Identities = 255/404 (63%), Positives = 327/404 (80%), Gaps = 3/404 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDE YDVIV GTGLKECILSGLLSV+G KVLHMDRN YYGGES+SLNL QL+K+F+  E 
Sbjct: 1   MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGET 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVP 119
           PP  LG +RD+NVD+IPKFI+A+G LV++L+HTDVT+YL FK +DGS+VY  +GK+HKVP
Sbjct: 61  PPESLGRNRDWNVDLIPKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           ATDMEAL SPLMG FEK R + F  YV +YDENDP+TH+G++L  +T  +L  K+GL+DN
Sbjct: 121 ATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLKTMTMAQLYKKFGLEDN 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
           TIDF+GHA+AL+ +D YLN+PA++TV R+KLY +S++R+ G SP+IYPLYGLG LPQAF+
Sbjct: 181 TIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSYLPNKVRKVGRV 298
           RL A+YGGTYMLN P  +V FDE GKV GV +  GE AKCK V+CDPSY P+KV+KVG+V
Sbjct: 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKV 299

Query: 299 ARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEA 358
            R I I++HPIPNTN+++S Q+I+PQKQLGR++D+Y+   S +H V PKGK+IA +ST  
Sbjct: 300 IRCICILNHPIPNTNNANSCQIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTTV 359

Query: 359 ETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           ET++P+ E++P + LLGP++E F  I D YEP  +   DN FIS
Sbjct: 360 ETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTEDGKKDNIFIS 403

Length = 443

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  383 bits (985), Expect = e-131
 Identities = 177/408 (43%), Positives = 246/408 (60%), Gaps = 15/408 (3%)

Query: 1   MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN 58
           MDEE  YDVI+LGTGL+E ILS  LS DG  VLH+D+NDYYG  S+SL L QL K F   
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDEC 60

Query: 59  EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKV 118
           E+ P+  G  RD N+D+IPKF+ AN  L+++LI T VT+YL FK + GSF+Y  GK++KV
Sbjct: 61  EKRPSKGGGDRDLNIDLIPKFLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKV 120

Query: 119 PATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDD 178
           P  + E   SPL+ +FEKRR  +F  +V +Y E    T + +  ++ T   L  K+GL  
Sbjct: 121 PYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQELYESKDTMEFLFEKFGLSG 179

Query: 179 NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238
            T +FIGH +AL  D   L+ PA + ++R+  Y  S   + G SPY+YP YGLGEL Q F
Sbjct: 180 ATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF 235

Query: 239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG-- 296
           AR SAVYGGTYMLN+     E +E   V  V     T K  K++  P+Y     + VG  
Sbjct: 236 ARSSAVYGGTYMLNQA--IDEINETKDVETVDKGSLTQKAGKIISSPTYFREDSKSVGQF 293

Query: 297 -RVARAIAIM-SHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFV 354
            R+ RAI I+  HP+P T    S+Q+I P   L R++D+ +        V P+G ++A++
Sbjct: 294 YRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYI 353

Query: 355 STEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           ST  ET  P+ E+   ++LLGP  E F D+ + Y+P  +   +  ++S
Sbjct: 354 STIDETPTPEDEILAALELLGPSVEKFVDVEEIYQPDED--TNQVYLS 399

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	419
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	100.0
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	100.0
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	100.0
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	100.0
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	100.0
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.96
PRK07233	434	hypothetical protein; Provisional	99.93
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.93
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.9
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.9
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.9
PRK07208	479	hypothetical protein; Provisional	99.89
PLN02576	496	protoporphyrinogen oxidase	99.89
PLN02612	567	phytoene desaturase	99.87
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.86
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.86
PLN02487	569	zeta-carotene desaturase	99.84
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.82
PLN02268	435	probable polyamine oxidase	99.75
PLN02568	539	polyamine oxidase	99.73
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.72
PLN02529	738	lysine-specific histone demethylase 1	99.7
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.7
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.69
PLN02676	487	polyamine oxidase	99.68
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.66
PLN03000	881	amine oxidase	99.64
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.63
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.59
COG3349	485	Uncharacterized conserved protein [Function unknow	99.55
COG2081	408	Predicted flavoproteins [General function predicti	99.54
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.52
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.51
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.47
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.47
PLN02976	1713	amine oxidase	99.46
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.46
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.45
COG0579	429	Predicted dehydrogenase [General function predicti	99.42
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.37
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.33
PRK08274	466	tricarballylate dehydrogenase; Validated	99.32
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.31
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.3
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.29
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.27
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.26
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.25
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.22
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	99.22
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.19
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.19
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.17
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.17
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.16
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.14
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.14
PRK10157	428	putative oxidoreductase FixC; Provisional	99.14
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.14
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.14
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.13
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.13
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.11
PRK07121	492	hypothetical protein; Validated	99.11
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.1
PRK10015	429	oxidoreductase; Provisional	99.1
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.08
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.07
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.07
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.07
PRK05257	494	malate:quinone oxidoreductase; Validated	99.06
PRK06175	433	L-aspartate oxidase; Provisional	99.05
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.05
PRK12839	572	hypothetical protein; Provisional	99.03
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.01
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.0
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.98
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.98
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.98
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.97
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.96
PRK02106	560	choline dehydrogenase; Validated	98.96
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.94
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.94
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.92
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.91
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.91
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.9
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.9
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.88
PRK06847	375	hypothetical protein; Provisional	98.88
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
PRK07190	487	hypothetical protein; Provisional	98.85
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.84
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.84
PRK06185	407	hypothetical protein; Provisional	98.84
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.83
PRK07804	541	L-aspartate oxidase; Provisional	98.83
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.81
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.81
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.76
PRK07512	513	L-aspartate oxidase; Provisional	98.76
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
PRK08275	554	putative oxidoreductase; Provisional	98.75
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.75
PRK07395	553	L-aspartate oxidase; Provisional	98.74
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.72
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.72
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.7
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.7
PRK08071	510	L-aspartate oxidase; Provisional	98.69
PRK08401	466	L-aspartate oxidase; Provisional	98.69
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.68
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.67
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.67
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.63
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.63
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.62
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.61
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.6
PRK06116	450	glutathione reductase; Validated	98.59
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.59
PRK06370	463	mercuric reductase; Validated	98.59
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.57
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.56
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.56
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.56
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.54
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.53
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.53
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.51
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.51
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.5
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.5
PRK09126	392	hypothetical protein; Provisional	98.49
PRK08163	396	salicylate hydroxylase; Provisional	98.49
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.47
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.47
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.47
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.46
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.46
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.46
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.46
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.45
PRK08013	400	oxidoreductase; Provisional	98.45
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.44
PLN02661	357	Putative thiazole synthesis	98.44
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.44
PRK07045	388	putative monooxygenase; Reviewed	98.44
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.43
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.42
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.42
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.42
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.4
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.39
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.39
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.38
PRK14694	468	putative mercuric reductase; Provisional	98.37
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.37
PLN02785	587	Protein HOTHEAD	98.36
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.36
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.36
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.36
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.36
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.35
PRK07236	386	hypothetical protein; Provisional	98.35
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.34
COG4716	587	Myosin-crossreactive antigen [Function unknown]	98.34
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.34
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.34
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.34
PTZ00052	499	thioredoxin reductase; Provisional	98.34
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.33
PRK06184	502	hypothetical protein; Provisional	98.33
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.31
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.31
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.31
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.31
TIGR02053	463	MerA mercuric reductase. This model represents the	98.31
PRK13748	561	putative mercuric reductase; Provisional	98.3
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.3
PRK12831	464	putative oxidoreductase; Provisional	98.29
PRK09897	534	hypothetical protein; Provisional	98.28
PTZ00058	561	glutathione reductase; Provisional	98.28
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.27
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.26
PRK06753	373	hypothetical protein; Provisional	98.26
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.26
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.26
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.23
PLN02985	514	squalene monooxygenase	98.23
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.23
PRK14727	479	putative mercuric reductase; Provisional	98.22
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.21
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.21
PRK06834	488	hypothetical protein; Provisional	98.21
PRK07538	413	hypothetical protein; Provisional	98.21
PRK08244	493	hypothetical protein; Provisional	98.21
PRK06126	545	hypothetical protein; Provisional	98.2
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.2
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.2
COG3573	552	Predicted oxidoreductase [General function predict	98.2
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.19
PLN02507	499	glutathione reductase	98.19
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.18
PLN02463	447	lycopene beta cyclase	98.18
PRK07588	391	hypothetical protein; Provisional	98.18
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.17
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.17
PTZ00367	567	squalene epoxidase; Provisional	98.17
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.16
PRK08294	634	phenol 2-monooxygenase; Provisional	98.16
PRK11445	351	putative oxidoreductase; Provisional	98.16
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.16
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.16
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.15
PLN02852	491	ferredoxin-NADP+ reductase	98.15
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.15
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.14
PLN02546	558	glutathione reductase	98.14
PRK05868	372	hypothetical protein; Validated	98.13
PRK10262	321	thioredoxin reductase; Provisional	98.13
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.12
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.12
PLN02815	594	L-aspartate oxidase	98.12
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.11
PRK06475	400	salicylate hydroxylase; Provisional	98.11
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.11
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.1
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.1
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.09
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.08
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.07
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.06
PLN02697	529	lycopene epsilon cyclase	98.05
PTZ00188	506	adrenodoxin reductase; Provisional	98.05
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.05
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.04
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.03
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.03
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.02
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.02
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.01
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.0
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.97
PRK09077	536	L-aspartate oxidase; Provisional	97.96
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.95
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.95
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.94
PRK06996	398	hypothetical protein; Provisional	97.93
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.91
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.9
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.9
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.9
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.9
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.9
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.89
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.89
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.84
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.83
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.82
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.77
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.74
KOG2853	509	consensus Possible oxidoreductase [General functio	97.74
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.73
PRK13984	604	putative oxidoreductase; Provisional	97.73
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.72
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.7
PRK07846	451	mycothione reductase; Reviewed	97.69
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.67
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.66
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.65
KOG2852	380	consensus Possible oxidoreductase [General functio	97.58
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.48
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.4
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.4
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.26
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.18
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.14
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.11
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.05
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.03
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.97
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.95
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.93
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	96.6
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.59
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.52
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.51
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.49
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.47
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.44
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.38
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.36
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.13
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.08
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.03
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.02
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.89
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.83
KOG2755	334	consensus Oxidoreductase [General function predict	95.82
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.75
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.71
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.68
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.66
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.64
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.57
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	95.54
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.51
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.5
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.44
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.44
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.4
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.38
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.32
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.31
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.31
TIGR02053	463	MerA mercuric reductase. This model represents the	95.28
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.28
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.27
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.27
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.26
PRK06370	463	mercuric reductase; Validated	95.21
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.19
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.18
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.18
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.16
PRK04148	134	hypothetical protein; Provisional	95.16
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	95.15
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.13
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.12
PRK07846	451	mycothione reductase; Reviewed	95.11
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.06
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	94.99
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.97
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.91
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.87
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	94.84
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	94.83
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.8
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.78
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.78
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	94.74
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.66
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.66
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.61
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.6
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.58
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	94.51
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.51
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.46
PRK07845	466	flavoprotein disulfide reductase; Reviewed	94.46
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.44
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.37
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.36
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.29
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.28
PTZ00153	659	lipoamide dehydrogenase; Provisional	94.23
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	94.22
PTZ00058	561	glutathione reductase; Provisional	94.18
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.11
PRK14989	847	nitrite reductase subunit NirD; Provisional	94.11
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.11
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.07
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.04
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.94
PLN02507	499	glutathione reductase	93.93
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.81
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.81
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.79
PRK10262	321	thioredoxin reductase; Provisional	93.77
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	93.72
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.61
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.61
PTZ00082	321	L-lactate dehydrogenase; Provisional	93.54
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	93.5
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	93.43
PLN02546	558	glutathione reductase	93.42
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.41
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.39
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	93.36
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.35
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.35
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.34
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.34
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.33
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	93.31
PRK13748	561	putative mercuric reductase; Provisional	93.31
PRK07417	279	arogenate dehydrogenase; Reviewed	93.26
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	93.18
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.17
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.13
PRK12831	464	putative oxidoreductase; Provisional	93.11
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.09
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.07
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.05
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.96
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	92.94
PTZ00052	499	thioredoxin reductase; Provisional	92.91
PRK14727	479	putative mercuric reductase; Provisional	92.88
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.85
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.84
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.76
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	92.76
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.74
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	92.73
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.66
PRK06116	450	glutathione reductase; Validated	92.65
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.63
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.44
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.34
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.32
PRK09564	444	coenzyme A disulfide reductase; Reviewed	92.24
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.01
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.95
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	91.92
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.81
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.8
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	91.79
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.73
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.68
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.64
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.64
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.62
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.6
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	91.53
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	91.47
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	91.44
PRK06223	307	malate dehydrogenase; Reviewed	91.41
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	91.4
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	91.3
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.29
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.28
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	91.25
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	91.2
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.12
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	91.08
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.06
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	91.04
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.95
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	90.9
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.89
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	90.88
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	90.8
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	90.78
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	90.76
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.72
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	90.67
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.67
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.61
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.51
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.51
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	90.45
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.39
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	90.38
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	90.36
PRK07045	388	putative monooxygenase; Reviewed	90.35
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.33
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	90.32
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.29
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	90.28
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.19
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	90.17
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	90.17
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	89.97
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	89.92
PRK14694	468	putative mercuric reductase; Provisional	89.79
PTZ00117	319	malate dehydrogenase; Provisional	89.76
PRK06849	389	hypothetical protein; Provisional	89.68
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	89.64
PRK06834	488	hypothetical protein; Provisional	89.61
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.55
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	89.53
PRK09496	453	trkA potassium transporter peripheral membrane com	89.48
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	89.44
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	89.41
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	89.33
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.32
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	89.17
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	88.94
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	88.89
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	88.84
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	88.83
PRK06179	270	short chain dehydrogenase; Provisional	88.82
PRK08163	396	salicylate hydroxylase; Provisional	88.79
PLN02697	529	lycopene epsilon cyclase	88.73
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	88.7
PLN02256	304	arogenate dehydrogenase	88.58
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	88.56
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	88.54
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	88.37

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=4.1e-62  Score=458.17  Aligned_cols=416  Identities=57%  Similarity=0.984  Sum_probs=342.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCC-CCCCCCCCCcceEEccCcce
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE-QPPAHLGSSRDYNVDMIPKF   79 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~-~~~~~~g~~~~~~~d~gp~~   79 (419)
                      |+++|||||+|+|+..+..|+.|+++|++|+++|+|+++||.+.++++.++.++|.... ..+..+|.++.|++|+.|++
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl   80 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL   80 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence            89999999999999999999999999999999999999999999999999999997652 12345678899999999999


Q ss_pred             eecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768           80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (419)
Q Consensus        80 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (419)
                      +++.++++++|+.+++.+|++|+.++..|+|.+|++.++|.++.+.|.+.++++++|+.+++|+.++.++.+..+..++.
T Consensus        81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~  160 (438)
T PF00996_consen   81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG  160 (438)
T ss_dssp             EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred             hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998766666666


Q ss_pred             ccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHH
Q 014768          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (419)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~  239 (419)
                      ++....++.++++++++++.+++++.+++++...+.+...|+.+++.++.+|+.|+++| |.+||+||.+|.++|+|+++
T Consensus       161 ~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GELpQ~Fc  239 (438)
T PF00996_consen  161 LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGELPQAFC  239 (438)
T ss_dssp             G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHHHHHHH
T ss_pred             cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccHHHHHH
Confidence            66778999999999999999999999999998887777778889999999999999999 98899999999999999999


Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccCeeEEEEEEecCCCCCCCCCCeEE
Q 014768          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ  319 (419)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  319 (419)
                      |.++..||.+++|++|.+|.+++++++.+|..+|++++|+.||++++|.|+.+.+.+.+.|++++++||+++.++....+
T Consensus       240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~~~s~~  319 (438)
T PF00996_consen  240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTEDASSVQ  319 (438)
T ss_dssp             HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT-SSEE
T ss_pred             HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCCCceEE
Confidence            99999999999999999999866899999999999999999999999988766555678999999999998766556778


Q ss_pred             EEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCCCCCCcE
Q 014768          320 VILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNC  399 (419)
Q Consensus       320 i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  399 (419)
                      +++|+.+..+.+.+|+.+.|.....||+|+++++++|.+++.+++++|+++++...++.+.|..+-+.++-.-.+..++|
T Consensus       320 IiiP~~~~~~~~dIyv~~~ss~~~~CP~G~yi~~~St~~~t~~p~~eL~~~l~lL~~i~e~f~~v~~~~~p~~~~~~~~i  399 (438)
T PF00996_consen  320 IIIPQSQVGRKSDIYVLQLSSSTGVCPKGQYIAYVSTTVETSNPEEELEPALELLGPIEEKFVSVSDLYEPTDDGTDDNI  399 (438)
T ss_dssp             EEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEEE-SS-HHHHTHHHHHTT-SESEEEEEEEEEEEESSSSTTTSE
T ss_pred             EecCCcccCCCCCeEEEEECCCccccCCCcEEEEEEeccCCCCcHHHHHHHHHhhccHHHHhcchhhcccccCCCccCce
Confidence            88998888777779999999889999999999999999888899999999998888888888877777776557788999


Q ss_pred             EEecCCCCCCchHHHhhh
Q 014768          400 FISTVTMMPQHTLSQLSR  417 (419)
Q Consensus       400 ~~~~~~tp~~d~~~~~~~  417 (419)
                      .....++++.|||.....
T Consensus       400 ~is~~~dat~hfe~~~~d  417 (438)
T PF00996_consen  400 FISKSYDATSHFETTCED  417 (438)
T ss_dssp             EE-----S-SBSHHHHHH
T ss_pred             EEcCCCCcccchHHHHHH
Confidence            999999999999987653

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=3.4e-60  Score=452.21  Aligned_cols=414  Identities=62%  Similarity=1.089  Sum_probs=367.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~   80 (419)
                      |+++|||||||+|++|+++|+.|+++|++|+++|+|+++||+++|+++.+++.+|..+...+..+|.++.|++|+.|+++
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l   80 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI   80 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence            88999999999999999999999999999999999999999999999999888887665567788999999999999999


Q ss_pred             ecCchhhHHHHhcCCcceeeEEEecceeEE-eCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768           81 IANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (419)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (419)
                      +..+.++++|..+++.+|++|..++..|++ .+|+..++|.++.+.|.+.++++++|+.+++|+.++.++...++..++.
T Consensus        81 ~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~  160 (443)
T PTZ00363         81 MASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG  160 (443)
T ss_pred             ecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence            999999999999999999999999999988 8899999999999999999999999999999999999887655555555


Q ss_pred             ccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHH
Q 014768          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (419)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~  239 (419)
                      .++...++.+|++++++++..++++.++++++..+.+...+...++.++..|+.+++.| |.++++||+||+++|+++|+
T Consensus       161 ~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~L~qal~  239 (443)
T PTZ00363        161 LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS  239 (443)
T ss_pred             cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHHHHHHHH
Confidence            45567899999999999999999998888887666666667888888999999999999 77889999999999999999


Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCccccccCeeEEEEEEecCCCCCCCCCCeE
Q 014768          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSV  318 (419)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  318 (419)
                      |.+++.|++|+++++|++|..++++++++|++ +|++++|+.||++++++|..+.+...+.|++++++||+++..+....
T Consensus       240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~~~~~v~R~i~i~~~pi~~~~~~~~~  319 (443)
T PTZ00363        240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKVIRCICILNHPIPNTNNANSC  319 (443)
T ss_pred             HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccccccEEEEEEEEEcccccccCcCccE
Confidence            99999999999999999999854578889998 89999999999999999876665678999999999999877655677


Q ss_pred             EEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCCCCCCc
Q 014768          319 QVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDN  398 (419)
Q Consensus       319 ~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (419)
                      ++++|+.++++.+.+|+.+.|.....||+|+++++++|.+++.+++++|+++++..-++.+.|..+-+..+..-.+..++
T Consensus       320 ~i~~P~~~~~~~~~i~v~~~s~~~~~cp~g~~i~~~st~~~t~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  399 (443)
T PTZ00363        320 QIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTTVETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTEDGKKDN  399 (443)
T ss_pred             EEEECCcccCCCCCEEEEEecCCCCcCCCCcEEEEEEEecCCCCHHHHHHHHHHHhccchheEEeccccccccccCCCCC
Confidence            88899999887889999999988999999999999999998889999999998866667777775555554433567799


Q ss_pred             EEEecCCCCCCchHHHh
Q 014768          399 CFISTVTMMPQHTLSQL  415 (419)
Q Consensus       399 i~~~~~~tp~~d~~~~~  415 (419)
                      |.....++++.|||+..
T Consensus       400 ~~~~~~~d~~~~~e~~~  416 (443)
T PTZ00363        400 IFISKSYDATSHFESAT  416 (443)
T ss_pred             EEEeCCCCccccHHHHH
Confidence            99999999999999544

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.5e-56  Score=395.24  Aligned_cols=416  Identities=63%  Similarity=1.066  Sum_probs=379.8

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCC-CCCCCCCCCCcceEEccCcce
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-EQPPAHLGSSRDYNVDMIPKF   79 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~-~~~~~~~g~~~~~~~d~gp~~   79 (419)
                      |+++|||||+|+|+..+..+..|+..|.+|+++|||+++||-.+|.+..++.++|+.. ...+..+|.++.|++|+.|++
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~   80 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF   80 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence            8889999999999999999999999999999999999999999999999999999833 557778889999999999999


Q ss_pred             eecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768           80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (419)
Q Consensus        80 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (419)
                      ++..+.++++|+..++.+|++|..++..+.|.+|+..++|.++.+++.+.++++++|+.+++|+.++.++.+.++..++.
T Consensus        81 lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~  160 (440)
T KOG1439|consen   81 LMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQG  160 (440)
T ss_pred             hhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             ccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHH
Q 014768          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (419)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~  239 (419)
                      ++....++.+++.++++.....++..++++++..+.|...|..+++.++.+|..|++.| |.++++||++|.++|+|.|+
T Consensus       161 ~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL~QgFa  239 (440)
T KOG1439|consen  161 YDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGELPQGFA  239 (440)
T ss_pred             cccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchhhHHHH
Confidence            77777799999999999888888888888888888899999999999999999999999 88889999999999999999


Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccCeeEEEEEEecCCCCCCCCCCeEE
Q 014768          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ  319 (419)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  319 (419)
                      |.++..||++++|.++.+|...+++++.+|+..+++..++.||+.++|.|+++.....+.|.++++.||++..++.++.+
T Consensus       240 RlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~vg~viR~iCIl~hpi~~t~~~~S~q  319 (440)
T KOG1439|consen  240 RLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKKVGQVIRAICILSHPIPNTNDAESAQ  319 (440)
T ss_pred             HHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHhhhheeeeeEEecCCcCcCCccceee
Confidence            99999999999999999999855799999999889999999999999998776555678899999999998877778889


Q ss_pred             EEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCCCCCCcE
Q 014768          320 VILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNC  399 (419)
Q Consensus       320 i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  399 (419)
                      +++|+.+..+...+|++..|+....||+|+++.+++|..++.+++.++.++++...++.+.|..+-+.++-.-.+-.+++
T Consensus       320 iiipq~q~~rksdi~v~~~ss~~~vcpeG~yia~vsT~~Et~~pE~ei~~~lellg~~~e~Fv~i~d~y~p~~~~~~~~~  399 (440)
T KOG1439|consen  320 IIIPQFQVGRKSDIYVFGLSSAHNVCPEGKYIAYVSTTVETPNPEVEILPGLELLGPIDEKFVGISDLYEPVDDGTESNI  399 (440)
T ss_pred             EEechhhhCCcccEEEEEeccCCCcCCCceEEEEEEeccCCCChHHhhhhHHHhhCchhhhhccccceEEecccCccceE
Confidence            99999999889999999999989999999999999999998899999999888877887877777766654434456789


Q ss_pred             EEecCCCCCCchHHHhhh
Q 014768          400 FISTVTMMPQHTLSQLSR  417 (419)
Q Consensus       400 ~~~~~~tp~~d~~~~~~~  417 (419)
                      .....++.+.+|+..+..
T Consensus       400 f~s~syDaT~HFet~~~d  417 (440)
T KOG1439|consen  400 FISTSYDATTHFETTVYD  417 (440)
T ss_pred             EEEcccCCCCchHHHHHH
Confidence            999999999999987654

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-45  Score=324.05  Aligned_cols=407  Identities=43%  Similarity=0.728  Sum_probs=332.8

Q ss_pred             CCCc--ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcc
Q 014768            1 MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPK   78 (419)
Q Consensus         1 m~~~--~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~   78 (419)
                      |+..  |||+|+|+|+..++.+++|+.+|.+|+++|+|+.+|+-.++.+..++..+|+.....+.-.+.++.|++|+.|.
T Consensus         1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK   80 (434)
T COG5044           1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK   80 (434)
T ss_pred             CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence            5544  99999999999999999999999999999999999999999999998888887655566667788999999999


Q ss_pred             eeecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccc
Q 014768           79 FIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (419)
Q Consensus        79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (419)
                      +++..+.+.++|++.++.+|++|.++...+.|.+|+..++|.++.+.+.+.++++++|+.+++|++++.++.. .+..++
T Consensus        81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~  159 (434)
T COG5044          81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQ  159 (434)
T ss_pred             hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998876 444444


Q ss_pred             cccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHH
Q 014768          159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF  238 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al  238 (419)
                      .+..+..++....+.++++....+++.+.++++..   ...|+++++.++.+|+.|++.| |.+|++||++|.++|++.+
T Consensus       160 ~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El~QGF  235 (434)
T COG5044         160 ELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF  235 (434)
T ss_pred             hhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhhhHHH
Confidence            44333445556678899988888889888887654   3457889999999999999999 9999999999999999999


Q ss_pred             HHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccC---eeEEEEEEec-CCCCCCCC
Q 014768          239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG---RVARAIAIMS-HPIPNTND  314 (419)
Q Consensus       239 ~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~~~~~---~~~~~~~~~~-~~l~~~~~  314 (419)
                      +|.+...||++++|+++.+|..  ...|.+|..++.+..|..||+.+++.+.......   .+.|..+++. |+......
T Consensus       236 aRssav~GgtymLn~~i~ein~--tk~v~~v~~~~~~~ka~KiI~~~~~~~~~~~~~~q~yriiRa~Ci~~~h~~~~~~~  313 (434)
T COG5044         236 ARSSAVYGGTYMLNQAIDEINE--TKDVETVDKGSLTQKAGKIISSPTYFREDSKSVGQFYRIIRAICILLVHPVPFTTG  313 (434)
T ss_pred             HHhhhccCceeecCcchhhhcc--ccceeeeecCcceeecCcccCCcccccccccccchhhhhhHhhhhhhcCccccccc
Confidence            9999999999999999999875  3334566668889999999999998875433222   4667777655 77654444


Q ss_pred             CCeEEEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCCC
Q 014768          315 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEP  394 (419)
Q Consensus       315 ~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (419)
                      ....+++|++.++.+.+.+++...++....||+|+++.+++|..++++++.++.++++.+.+..+-+..+-..++ ...+
T Consensus       314 ~ds~~iif~~~~lk~~~~i~v~~lgs~~~~CPEGy~l~yisT~~et~~~e~ei~~~lell~~~~e~~~~~e~iyq-~~ed  392 (434)
T COG5044         314 LDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPTPEDEILAALELLGPSVEKFVDVEEIYQ-PDED  392 (434)
T ss_pred             cccceeeechhhhcccCceEEEEecCCCCCCCCceEEEEEEeccCCCChHHHHHHHHHhhcchhhccccceeeee-cccc
Confidence            566788899999888889999999988999999999999999887777777777766644443333332211111 0112


Q ss_pred             CCCcEEEecCCCCCCchHHHhh
Q 014768          395 SLDNCFISTVTMMPQHTLSQLS  416 (419)
Q Consensus       395 ~~~~i~~~~~~tp~~d~~~~~~  416 (419)
                       .+++.+...+.-+.+||+.+-
T Consensus       393 -~~~~~~~~s~De~~~~e~l~~  413 (434)
T COG5044         393 -TNQVYLSDSVDESSHFESLTY  413 (434)
T ss_pred             -cceeEEeccccccccHHHHHH
Confidence             456777777766677877654

>TIGR02734 crtI_fam phytoene desaturase

Probab=100.00  E-value=2e-37  Score=306.98  Aligned_cols=369  Identities=18%  Similarity=0.197  Sum_probs=246.2

Q ss_pred             EEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCchh
Q 014768            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGAL   86 (419)
Q Consensus         7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~~   86 (419)
                      |||||||++||+||++|+++|++|+||||++++||+++|++.+                    +|.||.|++++..++.+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~~~~   60 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD--------------------GFRFDTGPTVITMPEAL   60 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC--------------------CeEEecCCeEEccccHH
Confidence            6999999999999999999999999999999999999999753                    79999999999876544


Q ss_pred             hHHHHhcC--CcceeeEEEecceeE--EeCCeEEEecCChhhhhccCCCChH--hHHHHHHHHHHHhhccc--------C
Q 014768           87 VRVLIHTD--VTKYLYFKAVDGSFV--YNKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDE--------N  152 (419)
Q Consensus        87 ~~~l~~~~--~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~  152 (419)
                      .+++...+  +.+++++.+.++.+.  +.+|..+.++.+ .+.+.+.+.+++  +.+.+.+|+..++....        .
T Consensus        61 ~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (502)
T TIGR02734        61 EELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV  139 (502)
T ss_pred             HHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            44444455  456688888877653  456777777743 555554443332  22334444443332211        0


Q ss_pred             CCCcc----------ccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCC
Q 014768          153 DPKTH----------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS  222 (419)
Q Consensus       153 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (419)
                      +....          ........++.++++++..++.++.++.. ...+........+..  .   .. + ....+  ..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~-~~~~~g~~p~~~~~~--~---~l-~-~~~~~--~~  209 (502)
T TIGR02734       140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSF-HALFLGGNPFRTPSI--Y---AL-I-SALER--EW  209 (502)
T ss_pred             CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcc-cceeeccCcccchHH--H---HH-H-HHHHh--hc
Confidence            00000          00012457778888877666766665542 111111111111111  1   11 0 01112  23


Q ss_pred             eEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC-------Ccccc-
Q 014768          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL-------PNKVR-  293 (419)
Q Consensus       223 ~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~-------~~~~~-  293 (419)
                      +.++|.||+..++++|.+.++++|++|+++++|++|..+ ++++++|++ +|+++.||.||++++..       +.... 
T Consensus       210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~  288 (502)
T TIGR02734       210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR  288 (502)
T ss_pred             eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc
Confidence            567999999999999999999999999999999999984 888889988 78889999999998753       11100 


Q ss_pred             ----c------cC-eeEEEEEEec---CCCCCCCCCCeEEEEe-c-----------CCcCCCCCcEEEEEeCCC-ccccC
Q 014768          294 ----K------VG-RVARAIAIMS---HPIPNTNDSHSVQVIL-P-----------QKQLGRRSDMYLFCCSYS-HNVAP  346 (419)
Q Consensus       294 ----~------~~-~~~~~~~~~~---~~l~~~~~~~~~~i~~-~-----------~~~~~~~~~~~v~~~s~~-~~~aP  346 (419)
                          .      .+ .....+..++   .+++..   ..+.+++ +           .+.+++++++|++++|.. |++||
T Consensus       289 ~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP  365 (502)
T TIGR02734       289 RYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQL---AHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAP  365 (502)
T ss_pred             cccccccccCCcCCeeeEEEEeeccccCcCCCc---CceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCC
Confidence                0      00 0111122233   122111   1112222 1           134567899999999988 99999


Q ss_pred             CCcEEEEEEeeccCCCccccchhHHhhcccccceee-eeccccccC-CCCCCCcEEEecCCCCCCchHHHhhh
Q 014768          347 KGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPV-NEPSLDNCFISTVTMMPQHTLSQLSR  417 (419)
Q Consensus       347 ~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~i~~~~~~tp~~d~~~~~~~  417 (419)
                      +|++++++.++++...    ..  -..|++.++++. +++++++++ .|+++++|++.++.|| .||++.++.
T Consensus       366 ~G~~~~~~~~~~~~~~----~~--~~~~~~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP-~t~~~~~~~  431 (502)
T TIGR02734       366 PGCENLYVLAPVPHLG----TA--DVDWSVEGPRYRDRILAYLEERAIPGLRDRIVVERTFTP-ADFRDRYNA  431 (502)
T ss_pred             CCCccEEEEEeCCCCC----CC--CCCcHHHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCH-HHHHHhcCC
Confidence            9999999998775320    11  125877788888 999999998 7999999999999999 999998764

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=100.00  E-value=1.2e-36  Score=300.47  Aligned_cols=372  Identities=14%  Similarity=0.143  Sum_probs=233.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec--
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA--   82 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~--   82 (419)
                      .||||||||++||+||++|+++|++|+|+||++.+||++++++.+                    +|.||+|++++..  
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~~   61 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR--------------------GFTFDVGATQVAGLE   61 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC--------------------CEEEeecceEEEecC
Confidence            589999999999999999999999999999999999999999753                    7999999999875  


Q ss_pred             Cch-hhHHHHhcCCcceeeEEEeccee--EEeCC-eEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcc-------c
Q 014768           83 NGA-LVRVLIHTDVTKYLYFKAVDGSF--VYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD-------E  151 (419)
Q Consensus        83 ~~~-~~~~l~~~~~~~~~~~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  151 (419)
                      ++. +...+.++++... .+...++.+  .+.+| ..+.++. +.+.+.+++.+.+. .+ .+|+..+....       .
T Consensus        62 ~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~-d~~~~~~~l~~~~p-~~-~~~~~~~~~~~~~~~~~~~  137 (492)
T TIGR02733        62 PGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWH-DPDRWQKERERQFP-GS-ERFWQLCSQLHQSNWRFAG  137 (492)
T ss_pred             cCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeec-CHHHHHHHHHHHCC-Ch-HHHHHHHHHHHHHHHHHhh
Confidence            233 3333434565421 133345443  35666 4566663 46666554443321 11 11222221110       0


Q ss_pred             CCC----Ccc---------------ccccCCcccHHHHHHHcC--CChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 014768          152 NDP----KTH---------------EGMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKL  210 (419)
Q Consensus       152 ~~~----~~~---------------~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (419)
                      ..+    ...               ....+...++.++++.++  .++.++.++.....++..     .+..+.......
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~-----~~~~~~~~~~~~  212 (492)
T TIGR02733       138 RDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQ-----EDADETAALYGA  212 (492)
T ss_pred             cCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhcc-----CChhhhhHHHHH
Confidence            000    000               000123467788887763  455666666533322221     111111111111


Q ss_pred             HHHHhhhccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC-----eEEEcCEEEeC
Q 014768          211 YAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVCD  284 (419)
Q Consensus       211 ~~~~~~~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g-----~~i~ad~VV~~  284 (419)
                      .+.....  ...+.++++||++.|+++|++.++++|++|+++++|++|.. +++++.+|.+ ++     +++.||+||+|
T Consensus       213 ~~~~~~~--~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~  289 (492)
T TIGR02733       213 TVLQMAQ--APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVAN  289 (492)
T ss_pred             HHhhccc--cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEEC
Confidence            1111111  12346789999999999999999999999999999999999 4787777776 54     68999999999


Q ss_pred             CCCCC--cccc-------------c--cC-eeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCCccccC
Q 014768          285 PSYLP--NKVR-------------K--VG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAP  346 (419)
Q Consensus       285 ~~~~~--~~~~-------------~--~~-~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP  346 (419)
                      +++..  +.+.             .  .+ .....+..++...+..+........+.+     ..++|++.++..+++||
T Consensus       290 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~d~~~aP  364 (492)
T TIGR02733       290 LPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-----QGSLFVSISQEGDGRAP  364 (492)
T ss_pred             CCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC-----CceEEEEeCCccccCCC
Confidence            87531  1100             0  00 0111223333322111111112222321     23788888766689999


Q ss_pred             CCcEEEEEEeeccCCCccccchhHHhhcccccceee-eeccccccCCCCCCCcEEEecCCCCCCchHHHhhh
Q 014768          347 KGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSR  417 (419)
Q Consensus       347 ~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~tp~~d~~~~~~~  417 (419)
                      +|+++++++++++. .+|..+.+  .+|++.++++. ++++++|++.|+++++|++.++.|| .||++.++.
T Consensus       365 ~G~~~l~~~~~~~~-~~~~~~~~--~~y~~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP-~t~~~~~~~  432 (492)
T TIGR02733       365 QGEATLIASSFTDT-NDWSSLDE--EDYTAKKKQYTQTIIERLGHYFDLLEENWVHVELATP-RTFERWTGR  432 (492)
T ss_pred             CCceEEEEEcCCCH-HHHcCCCH--HHHHHHHHHHHHHHHHHHHHHCCCccccEEEEEccCC-chHHHHhCC
Confidence            99999988877643 22322222  36888888899 9999999999999999999999999 999998875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02730 carot_isom carotene isomerase

Probab=100.00  E-value=3.8e-36  Score=296.48  Aligned_cols=375  Identities=19%  Similarity=0.209  Sum_probs=241.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC-
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~-   83 (419)
                      +||||||||++||+||++|+++|++|+||||++.+||++++++.+                    +|.||.|++++... 
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~--------------------G~~fd~g~~~~~~~~   60 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFERE--------------------GYRFDVGASMIFGFG   60 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccC--------------------CEEEEecchhheecC
Confidence            699999999999999999999999999999999999999998753                    89999999997632 


Q ss_pred             -----chhhHHHHhcCCcceeeEEEeccee--EEeCCeEEEecCChhhhhccCCCChH--hHHHHHHHHHHHhhccc---
Q 014768           84 -----GALVRVLIHTDVTKYLYFKAVDGSF--VYNKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDE---  151 (419)
Q Consensus        84 -----~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---  151 (419)
                           ..+.+.+...+  +.+++...+..+  .+++|..+.++. +.+.+.+.+.+.+  +...+++|+..++....   
T Consensus        61 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~-d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~  137 (493)
T TIGR02730        61 DKGTTNLLTRALAAVG--RKLETIPDPVQIHYHLPNGLNVKVHR-EYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN  137 (493)
T ss_pred             CcccccHHHHHHHHcC--CcccccCCCccEEEECCCCeeEeeec-CHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence                 22333333223  224444333333  345676777774 5777766655543  22334555444332110   


Q ss_pred             -C------CCCcc------------ccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHH
Q 014768          152 -N------DPKTH------------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA  212 (419)
Q Consensus       152 -~------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (419)
                       .      .+...            ....+...++.++++++..++.++.++......+........+.....   ..  
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~---~~--  212 (493)
T TIGR02730       138 SMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAG---MV--  212 (493)
T ss_pred             hhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHH---Hh--
Confidence             0      00000            000112356677787777777777766532222111100111111110   00  


Q ss_pred             HHhhhccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc-
Q 014768          213 ESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN-  290 (419)
Q Consensus       213 ~~~~~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~-  290 (419)
                        +..+ ...+.++|.||+..++++|++.++++|++|+++++|++|.. +++++.+|++ +|+++.||.||++++.+.. 
T Consensus       213 --~~~~-~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~  288 (493)
T TIGR02730       213 --FSDR-HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWDTF  288 (493)
T ss_pred             --hccc-ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence              1111 12356799999999999999999999999999999999998 4889999998 7888999999999876521 


Q ss_pred             --ccc-----c----------cC-eeEEEEEEecCCCCCCCCCCeEEEEecCC-c-CCCCCcEEEEEeCCC-ccccCCCc
Q 014768          291 --KVR-----K----------VG-RVARAIAIMSHPIPNTNDSHSVQVILPQK-Q-LGRRSDMYLFCCSYS-HNVAPKGK  349 (419)
Q Consensus       291 --~~~-----~----------~~-~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~-~~~~~~~~v~~~s~~-~~~aP~G~  349 (419)
                        .+.     .          .+ .....+..++.++..... ..+++.++.. . ....+++|+++||.. |++||+|+
T Consensus       289 ~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~  367 (493)
T TIGR02730       289 GKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGT-ECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGH  367 (493)
T ss_pred             HHhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCCC-CccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCc
Confidence              110     0          00 011222333333211111 1122323321 1 123578999999988 99999999


Q ss_pred             EEEEEEeeccCCCccccchhHHhhcccccceee-eeccccccCCCCCCCcEEEecCCCCCCchHHHhh
Q 014768          350 FIAFVSTEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLS  416 (419)
Q Consensus       350 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~tp~~d~~~~~~  416 (419)
                      +++++.++.+. ..|..+.+  .+|++.++++. +++++++++.|+++++|+++++.|| .+|++.++
T Consensus       368 ~~i~~~~~~~~-~~w~~~~~--~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP-~t~~r~~~  431 (493)
T TIGR02730       368 HIIHTFTPSSM-EDWQGLSP--KDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTP-RTHRRFLG  431 (493)
T ss_pred             EEEEEecCCCh-hhccCCCc--HHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCc-hhHHHHhC
Confidence            99888776533 22333322  36887888899 9999999988999999999999999 99986443

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.2e-37  Score=298.66  Aligned_cols=369  Identities=19%  Similarity=0.261  Sum_probs=224.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~   82 (419)
                      +.+||||||||++||+||++||++|++|+||||++.+||++++++..                    +|.||+||+++..
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--------------------Gf~fd~G~~~~~~   61 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--------------------GFRFDTGPSWYLM   61 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------ceEeccCcceeec
Confidence            46899999999999999999999999999999999999999999864                    7999999999887


Q ss_pred             CchhhHHHHhcC-Ccce-eeEEEecceeE--EeCCeEEEecCChhhhhccCCCChH--hHHHHHHHHHHHhh-cc---cC
Q 014768           83 NGALVRVLIHTD-VTKY-LYFKAVDGSFV--YNKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQD-YD---EN  152 (419)
Q Consensus        83 ~~~~~~~l~~~~-~~~~-~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~---~~  152 (419)
                      +... ..+.+++ +..+ +.+...++.+.  +.+|..+.+..+ .+.+...+.+..  +...+.+++..+.. +.   ..
T Consensus        62 ~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  139 (487)
T COG1233          62 PDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTD-LEATAELLESLEPGDGEALARYLRLLARLYELLAAL  139 (487)
T ss_pred             CchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCC-HHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence            7543 4444445 6655 77777777764  345777877743 555554443321  22233333332222 10   00


Q ss_pred             CCC-cccc---c-----------cCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhh
Q 014768          153 DPK-THEG---M-----------DLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR  217 (419)
Q Consensus       153 ~~~-~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (419)
                      ... ....   .           .+...+..+++.....++.++..+...... ..    ..|....  .+..++ +...
T Consensus       140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~-~~----~~p~~~~--a~~~~~-~~~~  211 (487)
T COG1233         140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVY-GG----APPSTPP--ALYLLL-SHLG  211 (487)
T ss_pred             cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHh-cC----CCCCchh--HHHHHH-HHhc
Confidence            000 0000   0           011223333333332223333333321111 10    1111110  011111 1111


Q ss_pred             ccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC-Cccc-cc
Q 014768          218 FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL-PNKV-RK  294 (419)
Q Consensus       218 ~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~-~~~~-~~  294 (419)
                        ...++.||+|||++|+++|++.++++||+|+++++|++|.+ ++|+.+++++ +|+.+++|.||+|++.. +..+ ..
T Consensus       212 --~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~  288 (487)
T COG1233         212 --LSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADPALLARLLGE  288 (487)
T ss_pred             --ccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCchhhhhhhhhh
Confidence              24567899999999999999999999999999999999999 5888777777 56689999999999762 1111 00


Q ss_pred             c-C-----eeEEEEEEecC--CCCCC--CCCCeEEEEecCC----------cCCCCCcEEEEEeCCC-ccccCCCcEEEE
Q 014768          295 V-G-----RVARAIAIMSH--PIPNT--NDSHSVQVILPQK----------QLGRRSDMYLFCCSYS-HNVAPKGKFIAF  353 (419)
Q Consensus       295 ~-~-----~~~~~~~~~~~--~l~~~--~~~~~~~i~~~~~----------~~~~~~~~~v~~~s~~-~~~aP~G~~~l~  353 (419)
                      . .     ...+....+..  .+...  ...+...++..+.          .....+.+|+++||.. |++||+|++.++
T Consensus       289 ~~~~~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~  368 (487)
T COG1233         289 ARRPRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTF  368 (487)
T ss_pred             hhhhccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCccee
Confidence            0 0     00010011111  11110  0011112211111          1111126899999998 999999998333


Q ss_pred             EE-eeccCCCccccchhHHhhcccccceee-eeccccccCCCCCCCcEEEecCCCCCCchHHHhh
Q 014768          354 VS-TEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLS  416 (419)
Q Consensus       354 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~tp~~d~~~~~~  416 (419)
                      .. .+.+          ...+|++.++.+. . ++.+++..|+++++|+.++..|| .|+++.++
T Consensus       369 ~~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp-~~~e~~~~  421 (487)
T COG1233         369 AQLVPVP----------SLGDYDELKESLADA-IDALEELAPGLRDRIVAREVLTP-LDLERYLG  421 (487)
T ss_pred             eeeeecC----------cCCChHHHHHHHHHH-HHHHhhcCCCcccceeEEEEeCh-HHHHHhcC
Confidence            22 2221          1235777777777 6 77788888999999999999999 99999876

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.2e-35  Score=259.23  Aligned_cols=346  Identities=31%  Similarity=0.573  Sum_probs=270.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHH-------hhc---C----------C-C--
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-------RFR---G----------N-E--   59 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~-------~~~---~----------~-~--   59 (419)
                      ++|||||||+|+...+.|+..++.|.+|+.+|.|+++||.++++....+++       .+.   +          + .  
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~~   86 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAPP   86 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCCCC
Confidence            469999999999999999999999999999999999999999998762221       110   0          0 0  


Q ss_pred             --------------C--CC------CCC----------CCCcceEEccCcceeecCchhhHHHHhcCCcceeeEEEecce
Q 014768           60 --------------Q--PP------AHL----------GSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGS  107 (419)
Q Consensus        60 --------------~--~~------~~~----------g~~~~~~~d~gp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  107 (419)
                                    .  .+      .+.          ..++.|++|+.|+++++.|.++++|+++++.+|.+|+.++..
T Consensus        87 t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r~  166 (547)
T KOG4405|consen   87 TPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDRI  166 (547)
T ss_pred             CCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccchh
Confidence                          0  00      010          245779999999999999999999999999999999999999


Q ss_pred             eEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcc-cCCCCccccccCCcccHHHHHHHcCCChhHHHHHHH
Q 014768          108 FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD-ENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH  186 (419)
Q Consensus       108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  186 (419)
                      +.+..|.+..+|+++.+.|.++-+++.+|+.+++|+.++..|. +.++....  +....+|.+|++..++.+.++.++.+
T Consensus       167 l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~--~~~e~~F~EyL~~~rltp~lqs~vl~  244 (547)
T KOG4405|consen  167 LAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYV--EFRERPFSEYLKTMRLTPKLQSIVLH  244 (547)
T ss_pred             hcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHH--HhhcCcHHHHHHhcCCChhhHHHHHH
Confidence            9888999999999999999999999999999999999999984 22332222  34678999999999999999999988


Q ss_pred             HHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcE
Q 014768          187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV  266 (419)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v  266 (419)
                      .+++....   ...+.+.+.+...|+.++++| |+.||+||.+|.+.|+++|+|.++..|+.+.++.+|+.|..| ++..
T Consensus       245 aIaM~~~~---~~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivld-k~s~  319 (547)
T KOG4405|consen  245 AIAMLSES---QLTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLD-KESL  319 (547)
T ss_pred             HHHhcCcc---cccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeec-cccc
Confidence            99886533   234678889999999999999 999999999999999999999999999999999999999985 4433


Q ss_pred             E---EEEeCCeEEEcCEEEeCCCCCCcccccc---CeeEEEEEEecCCCCCCCCCCeEEE-EecCCcCCCCCcEEEEEeC
Q 014768          267 V---GVTSEGETAKCKKVVCDPSYLPNKVRKV---GRVARAIAIMSHPIPNTNDSHSVQV-ILPQKQLGRRSDMYLFCCS  339 (419)
Q Consensus       267 ~---gV~~~g~~i~ad~VV~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~~~~~~~~~~~v~~~s  339 (419)
                      .   ++...|+++.|+++|++..|.|+.+.+.   ..+.|.+.+.+.++...+......+ ..+..+ |....+.+...+
T Consensus       320 ~~~~~l~s~g~ri~~k~~v~s~~y~pe~~~~~~~~K~Israv~itd~sil~~e~~q~~~ll~~~~~e-pg~~avr~iel~  398 (547)
T KOG4405|consen  320 DCKAILDSFGQRINAKNFVVSPSYAPEVVCSRVQLKQISRAVLITDPSILKTELDQQLSLLSLLAVE-PGAMAVRLIELC  398 (547)
T ss_pred             chhhhHhhhcchhcceeeeecCcccccccccccchhhcceeEEecCccccchhHHhhhhhhhccccC-cchhhHHHHHhh
Confidence            2   3334899999999999999998654432   2467888877777644331111111 112111 222222233334


Q ss_pred             CCccccCCCcEEEEEEe
Q 014768          340 YSHNVAPKGKFIAFVST  356 (419)
Q Consensus       340 ~~~~~aP~G~~~l~~~~  356 (419)
                      .....||+|+++++...
T Consensus       399 ~~t~tc~kg~yLvhlT~  415 (547)
T KOG4405|consen  399 SSTMTCPKGTYLVHLTC  415 (547)
T ss_pred             cccccCccceEEEEeec
Confidence            44667999999988774

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.96  E-value=2.8e-28  Score=220.87  Aligned_cols=188  Identities=20%  Similarity=0.225  Sum_probs=136.5

Q ss_pred             CCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc---c-----
Q 014768          221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN---K-----  291 (419)
Q Consensus       221 ~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~---~-----  291 (419)
                      ..++.||+|||++++.++++.++++|++|.+++.|.+|..+ +|+++||++ ||+++.++.||||++.|..   .     
T Consensus       253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~  331 (561)
T KOG4254|consen  253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA  331 (561)
T ss_pred             CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence            45677999999999999999999999999999999999995 899999999 9999999999999987621   1     


Q ss_pred             cccc---------CeeEE--EEEEec----C--CCCCCCCCCeEEEEecC--------------CcC-CCCCcEEEEEeC
Q 014768          292 VRKV---------GRVAR--AIAIMS----H--PIPNTNDSHSVQVILPQ--------------KQL-GRRSDMYLFCCS  339 (419)
Q Consensus       292 ~~~~---------~~~~~--~~~~~~----~--~l~~~~~~~~~~i~~~~--------------~~~-~~~~~~~v~~~s  339 (419)
                      ++..         +++.+  .-..+.    +  |++.    ....+.+..              ..+ .+.|.+++++||
T Consensus       332 LPeef~i~q~d~~spv~k~~~psFl~~~~~~~~plph----~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS  407 (561)
T KOG4254|consen  332 LPEEFVIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPH----HGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPS  407 (561)
T ss_pred             CCchhhhhhcccccccccccCcceeecCCCCCCCCCc----cceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccc
Confidence            1111         11111  000011    1  1111    111121111              112 356899999999


Q ss_pred             CC-ccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceee-eeccccccCCCCCCCcEEEecCCCCCCchHHHhhh
Q 014768          340 YS-HNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSR  417 (419)
Q Consensus       340 ~~-~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~tp~~d~~~~~~~  417 (419)
                      .. |+.||+|+|++++.++... ..|+...+.  .+++.++++. +++..+|+++|++++.|+..++.|| .|.++-+.+
T Consensus       408 ~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~--eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP-~t~qr~l~~  483 (561)
T KOG4254|consen  408 SLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKG--EYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTP-PTHQRFLGR  483 (561)
T ss_pred             ccCCCcCCCCceEEEEeccCCc-cccccCCcc--cchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCC-chhhHHhcC
Confidence            98 9999999999999886533 222222111  3356789999 9999999989999999999999999 998887653

>PRK07233 hypothetical protein; Provisional

Probab=99.93  E-value=5e-24  Score=208.18  Aligned_cols=250  Identities=21%  Similarity=0.254  Sum_probs=156.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCc-
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG-   84 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~-   84 (419)
                      +|||||||++||+||+.|+++|++|+|+|+++++||+++++..+                    ++.+|.|.+++.... 
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~--------------------g~~~d~g~~~~~~~~~   60 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFG--------------------GLPIERFYHHIFKSDE   60 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccC--------------------CcchhhhhhhhccccH
Confidence            58999999999999999999999999999999999999988642                    688899988876544 


Q ss_pred             hhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccccCCc
Q 014768           85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTR  164 (419)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (419)
                      .+.+++.+.++...+.+...... .+.+|....++ +....+....+.+.++  +......+ .... ..   ....+..
T Consensus        61 ~~~~l~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~~---~~~~~~~  131 (434)
T PRK07233         61 ALLELLDELGLEDKLRWRETKTG-YYVDGKLYPLG-TPLELLRFPHLSLIDK--FRLGLLTL-LARR-IK---DWRALDK  131 (434)
T ss_pred             HHHHHHHHcCCCCceeeccCceE-EEECCeEecCC-CHHHHHcCCCCCHHHH--HHhHHHHH-hhhh-cc---ccccccc
Confidence            45666666787655444332222 23355544332 2122222222222222  11111111 1110 00   0012356


Q ss_pred             ccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccC-CCeEEEecCCcCcHHHHHHHHHH
Q 014768          165 VTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFARLSA  243 (419)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~p~gG~~~l~~al~~~~~  243 (419)
                      .++.+|+++...++....++.+...........+.++...+..+....  ...... ...+.+|+||++.++++|++.++
T Consensus       132 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~  209 (434)
T PRK07233        132 VPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRG--NRRYSLFGEKLGYLEGGFATLIDALAEAIE  209 (434)
T ss_pred             ccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhh--ccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence            889999988754443445555443322222211222222222221110  111101 22477999999999999999999


Q ss_pred             HcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768          244 VYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (419)
Q Consensus       244 ~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~  287 (419)
                      +.|++|++|++|++|+.+ +++++++..+++++.||+||++.+.
T Consensus       210 ~~g~~v~~~~~V~~i~~~-~~~~~~~~~~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        210 ARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVISTAPP  252 (434)
T ss_pred             hcCceEEeCCCeeEEEEc-CCceEEEEeCCceEECCEEEECCCH
Confidence            999999999999999984 7777777778889999999998754

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.93  E-value=4.5e-24  Score=201.33  Aligned_cols=311  Identities=15%  Similarity=0.209  Sum_probs=194.5

Q ss_pred             eEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      .++|||||++||+||++|+++|  .+|+|||+.+++||..+|+..+                    +|.||.||+.+...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~--------------------G~~~e~G~~~f~~~   61 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID--------------------GFLFERGPHHFLAR   61 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC--------------------CEEEeechhheecc
Confidence            6899999999999999999999  9999999999999999999754                    89999999988766


Q ss_pred             -chhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccccC
Q 014768           84 -GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDL  162 (419)
Q Consensus        84 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (419)
                       ..+++++.++++++.+.+......|.|.+|+.+.+|....-.+......  ++...   ...+..+.... . +.  ..
T Consensus        62 ~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~--~~~~~---~~~~~~~~~~~-~-~~--~~  132 (444)
T COG1232          62 KEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLS--SEAGL---ARALQEFIRPK-S-WE--PK  132 (444)
T ss_pred             hHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccceeecCCcccc--chhHH---HHHHHhhhccc-C-CC--CC
Confidence             5677888888999876655444457888999999986532222222111  11112   22222221110 0 00  23


Q ss_pred             CcccHHHHHHHcCCChhH-HHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccC-----------------CCeE
Q 014768          163 TRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-----------------GSPY  224 (419)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------~~~~  224 (419)
                      .+.++.+|+++. +..++ ..++.+.+.-...++..+-++..   .+..+......| +                 ...+
T Consensus       133 ~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~---~~p~~~~~e~~~-~s~~~g~~~~~~~~~~~~~~~~  207 (444)
T COG1232         133 QDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAA---AFPILARAERKY-GSLLRGAKKEGLPKQSLKKEKF  207 (444)
T ss_pred             CCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHH---hcchhhhhhhhh-cchhhhhhhccCcccccccccc
Confidence            678999998876 33443 34555544322211111111110   111111111111 1                 1246


Q ss_pred             EEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC--Cccccc--------
Q 014768          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL--PNKVRK--------  294 (419)
Q Consensus       225 ~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~--~~~~~~--------  294 (419)
                      .+.+||++.++++|++.+..+   |+++++|++|..+ ....+.+..+|+.+.||.||+++...  +..+..        
T Consensus       208 ~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~-~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~~~~~~~  283 (444)
T COG1232         208 GYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK-GAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKAAK  283 (444)
T ss_pred             cccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc-CCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcchhhhhh
Confidence            788999999999999988655   9999999999984 55555666689999999999998542  111111        


Q ss_pred             ---cCeeEEEEEEecCC-CCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCC-ccccCCCcEEEEEEeecc
Q 014768          295 ---VGRVARAIAIMSHP-IPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYS-HNVAPKGKFIAFVSTEAE  359 (419)
Q Consensus       295 ---~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~-~~~aP~G~~~l~~~~~~~  359 (419)
                         ...+...+..+.++ .+..  .+..++.+++...   ....+..+|.. |...|+|++++++..-.+
T Consensus       284 ~~~~~s~~~vv~~~~~~~~~~~--~~~~g~~iad~~~---~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~  348 (444)
T COG1232         284 ELQYTSVVTVVVGLDEKDNPAL--PDGYGLLIADDDP---YILAITFHSNKWPHEAPEGKTLLRVEFGGP  348 (444)
T ss_pred             hccccceEEEEEEeccccccCC--CCceEEEEecCCC---cceeEEEecccCCCCCCCCcEEEEEEeecC
Confidence               01122233334442 2211  2344555665432   13445556666 999999999999876543

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.90  E-value=1.3e-21  Score=192.60  Aligned_cols=247  Identities=14%  Similarity=0.133  Sum_probs=153.7

Q ss_pred             ceEEEECCCchHHHHhhccccC----CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768            5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~   80 (419)
                      .||+|||||++||+||++|+++    |++|+|+|+++++||+++|.+.+                    ++.+|.|++++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~--------------------g~~~e~G~~~~   62 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED--------------------GYLIERGPDSF   62 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC--------------------CEEEecCcccc
Confidence            5899999999999999999999    99999999999999999998642                    78999999999


Q ss_pred             ecCch-hhHHHHhcCCcceeeEEEecceeEEeC-CeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccc
Q 014768           81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (419)
Q Consensus        81 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (419)
                      ....+ +.+++.+.++............+.+.+ |..+.+|.+..+.+...+.++..+  +......   +....     
T Consensus        63 ~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~-----  132 (462)
T TIGR00562        63 LERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGK--LRAGMDF---IRPAS-----  132 (462)
T ss_pred             ccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhh--HHhhhhh---ccCCC-----
Confidence            87655 666666678876543222233445555 777777755344444444443222  1111111   11100     


Q ss_pred             cccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHH-------HHHh------------hhcc
Q 014768          159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLY-------AESI------------ARFQ  219 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------------~~~~  219 (419)
                        ...+.++.+|+++..-+.....++.+...-....+..+.++..++.++...       ...+            ..|.
T Consensus       133 --~~~d~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  210 (462)
T TIGR00562       133 --PGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTA  210 (462)
T ss_pred             --CCCCcCHHHHHHHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccc
Confidence              113478999998763333334445444322111111011111111111100       0000            0010


Q ss_pred             -C-CCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          220 -G-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       220 -g-~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                       + ...+.+++||++.|+++|++.+.  .++|++|++|++|..+ ++++ .|++ +|+++.||+||++...
T Consensus       211 ~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~t~P~  277 (462)
T TIGR00562       211 KKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR-GSNY-TLELDNGVTVETDSVVVTAPH  277 (462)
T ss_pred             cccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec-CCcE-EEEECCCcEEEcCEEEECCCH
Confidence             0 11256789999999999998874  2789999999999984 5554 3555 6778999999998743

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.90  E-value=9.1e-22  Score=193.16  Aligned_cols=314  Identities=13%  Similarity=0.187  Sum_probs=174.3

Q ss_pred             eEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      +|+|||||++||+||+.|+++|  ++|+|+|+++++||+++|.+.+                    ++.+|+|++++...
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~~~   61 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD--------------------GFPIELGPESFLAR   61 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC--------------------CeEEecChHHhcCC
Confidence            7999999999999999999988  8999999999999999998643                    68899999877655


Q ss_pred             c-hhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCC-----CChHhHHHHHHHHHHHhhcccCCCCcc
Q 014768           84 G-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPL-----MGIFEKRRARKFFIYVQDYDENDPKTH  157 (419)
Q Consensus        84 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (419)
                      + .+.+++.+.++............+.+.+|+.+.+|......+...+     ..++....  ++ +......  .+. .
T Consensus        62 ~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~--~~~-~  135 (451)
T PRK11883         62 KPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIG--KL-RAAADLR--PPR-W  135 (451)
T ss_pred             cHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHH--HH-HhhCccc--CCC-C
Confidence            4 3566666678765432221122355667777666532111110000     01111000  00 0001110  000 0


Q ss_pred             ccccCCcccHHHHHHHcCCChhH-HHHHHHHH-hhccCCCCCCCcHHHHHHHHHHHH-------HHhh----hcc--CCC
Q 014768          158 EGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYA-------ESIA----RFQ--GGS  222 (419)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~--g~~  222 (419)
                      .  ...+.++.+|+++. +++.+ ..++.+.. .++.. +..+.++...+..+..+.       ..+.    ...  ...
T Consensus       136 ~--~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (451)
T PRK11883        136 K--PGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAG-DIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKG  211 (451)
T ss_pred             C--CCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecC-ChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCC
Confidence            1  13568899999764 44443 44444333 22221 111111111111111111       0000    000  122


Q ss_pred             eEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC--Cccc-------
Q 014768          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL--PNKV-------  292 (419)
Q Consensus       223 ~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~--~~~~-------  292 (419)
                      .+.+++||++.++++|++.+.+.  +|++|++|++|..+ ++.+ .|.+ +|+++.||+||++++..  ....       
T Consensus       212 ~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~~~~  287 (451)
T PRK11883        212 VFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS-GDGY-EIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPAFA  287 (451)
T ss_pred             ceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc-CCeE-EEEECCCCEEEcCEEEECCCHHHHHHhccChhHHH
Confidence            45689999999999999877543  89999999999984 6554 4555 88899999999987532  0000       


Q ss_pred             --c--ccCeeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCC-ccccCCCcEEEEEEee
Q 014768          293 --R--KVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYS-HNVAPKGKFIAFVSTE  357 (419)
Q Consensus       293 --~--~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~-~~~aP~G~~~l~~~~~  357 (419)
                        .  .+..+.+.+...++++...  .....++++...  ..+...+...+.. +..+|+|+.++.....
T Consensus       288 ~~~~~~~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~  353 (451)
T PRK11883        288 LFKTIPSTSVATVALAFPESATNL--PDGTGFLVARNS--DYTITACTWTSKKWPHTTPEGKVLLRLYVG  353 (451)
T ss_pred             HHhCCCCCceEEEEEEeccccCCC--CCceEEEecCCC--CCcEEEEEeEcCcCCCCCCCCcEEEEEecC
Confidence              0  0122333333344443111  122233344221  1223334445655 7889999887776553

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.90  E-value=2.3e-22  Score=197.63  Aligned_cols=246  Identities=13%  Similarity=0.205  Sum_probs=150.9

Q ss_pred             eEEEECCCchHHHHhhccccC------CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcce
Q 014768            6 DVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~------G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~   79 (419)
                      +|+|||||++||+||+.|+++      |++|+|||+++++||+++|.+..                    ++.+|+|+++
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~--------------------g~~~e~G~~~   62 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK--------------------DFIMESGADS   62 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC--------------------CEEEecCcHH
Confidence            699999999999999999986      48999999999999999998642                    7899999999


Q ss_pred             eecCch-hhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChh--------hhhccCCCChHhHHHHHHHHHHHhhcc
Q 014768           80 IIANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDM--------EALKSPLMGIFEKRRARKFFIYVQDYD  150 (419)
Q Consensus        80 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (419)
                      +....+ +.+++.++++...+.+......+.+.+|....+|....        +.+...+.+..  ..+..+    ....
T Consensus        63 i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~----~~~~  136 (463)
T PRK12416         63 IVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTK--GKIVAL----KDFI  136 (463)
T ss_pred             HhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHH--HHHHhh----hhhc
Confidence            876544 55666667887654333333455565666665553211        11222222211  111111    1111


Q ss_pred             cCCCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH-------Hh----hh--
Q 014768          151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAE-------SI----AR--  217 (419)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~--  217 (419)
                      ... .  .  .....|+.+|+++..-+.....++.+........+....+....+..+..+..       .+    ..  
T Consensus       137 ~~~-~--~--~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  211 (463)
T PRK12416        137 TKN-K--E--FTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQ  211 (463)
T ss_pred             cCC-C--C--CCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccC
Confidence            100 0  0  12578899999876333333445554443222221111111111111111110       00    00  


Q ss_pred             ccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          218 FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       218 ~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      ..+...+.+++||++.|+++|++.+.+  ++|++|++|++|..+ ++++ .|++ +|+++.||+||++..
T Consensus       212 ~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        212 SAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFANHESIQADYVVLAAP  277 (463)
T ss_pred             CCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEECCC
Confidence            012335778999999999999998754  689999999999984 6655 5555 778899999999874

>PRK07208 hypothetical protein; Provisional

Probab=99.89  E-value=7.1e-22  Score=195.02  Aligned_cols=252  Identities=16%  Similarity=0.166  Sum_probs=153.5

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~   80 (419)
                      |++..||+|||||++||+||++|+++|++|+|+|+++++||++.+...+                    ++.+|.|+|++
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~--------------------g~~~d~G~h~~   60 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK--------------------GNRFDIGGHRF   60 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccC--------------------CceEccCCcee
Confidence            7888999999999999999999999999999999999999999987642                    68899999998


Q ss_pred             ecCch-hhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768           81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (419)
Q Consensus        81 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (419)
                      ....+ +.+++.+.+..+.+... ....+.+.+|....+|....+.+.  .+.+..  .+.....++.....  +.    
T Consensus        61 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~--~~~~~~--~~~~~~~~~~~~~~--~~----  129 (479)
T PRK07208         61 FSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALK--NLGLWR--TAKCGASYLKARLR--PR----  129 (479)
T ss_pred             ccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHH--hCCHhH--HHHHHHHHHHHhcC--CC----
Confidence            86654 44445555543322211 122334557777777644222221  122111  11222222222110  00    


Q ss_pred             ccCCcccHHHHHHHcCCChhHHHHHHHHHh-hccCCCCCCCcHHHHH---------HHHHHHHHHh-h-------hcc-C
Q 014768          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALA-LHRDDRYLNEPALDTV---------KRMKLYAESI-A-------RFQ-G  220 (419)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~-------~~~-g  220 (419)
                        ....++.+|+.+..-......++.+... ++..+ ...-++..++         ..+...+... .       ... .
T Consensus       130 --~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (479)
T PRK07208        130 --KEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGVP-CDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSL  206 (479)
T ss_pred             --CCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCCC-hHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccc
Confidence              1468899999875333333444444332 22211 1011111000         0011011110 0       000 0


Q ss_pred             CCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCc-EEEEEe---CCe--EEEcCEEEeCCCC
Q 014768          221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK-VVGVTS---EGE--TAKCKKVVCDPSY  287 (419)
Q Consensus       221 ~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~-v~gV~~---~g~--~i~ad~VV~~~~~  287 (419)
                      ...+.+|+||++.++++|++.+++.|++|++|++|++|..+ +++ ++++..   +|+  ++.||+||++.+.
T Consensus       207 ~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~  278 (479)
T PRK07208        207 IEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVVVNDTDGTEETVTADQVISSMPL  278 (479)
T ss_pred             eeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence            23577999999999999999999999999999999999985 554 445543   343  6899999998754

>PLN02576 protoporphyrinogen oxidase

Probab=99.89  E-value=1.1e-21  Score=194.55  Aligned_cols=250  Identities=18%  Similarity=0.183  Sum_probs=157.7

Q ss_pred             CcceEEEECCCchHHHHhhccccC-CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~   81 (419)
                      .++||+|||||++||+||++|+++ |++|+|+|+++++||+++|.+.+                    +|.+|.||+++.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~--------------------g~~~d~G~~~~~   70 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED--------------------GFIWEEGPNSFQ   70 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC--------------------CeEEecCCchhc
Confidence            357999999999999999999999 99999999999999999998643                    799999999999


Q ss_pred             cCchhhHHHHhcCCcceeeEEEe-cceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccc
Q 014768           82 ANGALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (419)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (419)
                      ...+.+..+.+.++.+++.+... ...+.+.+|+...+|.+..+.+...+.++.++  +....... .+....+      
T Consensus        71 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~------  141 (496)
T PLN02576         71 PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGK--IRAGLGAF-GWKRPPP------  141 (496)
T ss_pred             cCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHH--HHHhHHHh-hccCCCC------
Confidence            87777777777788766544322 23456678888888865444444455554332  21111111 1101011      


Q ss_pred             cCCcccHHHHHHHcCCChhH-HHHHHHHHhhccCCCCCCCcHHHHHHHHHHH-----------HHHh-hh-c--------
Q 014768          161 DLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLY-----------AESI-AR-F--------  218 (419)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~-~--------  218 (419)
                      .....++.+|+++. +.+.+ ..++.+...-....+...-++...+..+..+           +... .. .        
T Consensus       142 ~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~  220 (496)
T PLN02576        142 PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRD  220 (496)
T ss_pred             CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccc
Confidence            12568999999876 44444 4455544422222111111111111111110           0000 00 0        


Q ss_pred             -----cCCCeEEEecCCcCcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEE--e-CC-eEEEcCEEEeCCC
Q 014768          219 -----QGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EG-ETAKCKKVVCDPS  286 (419)
Q Consensus       219 -----~g~~~~~~p~gG~~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~--~-~g-~~i~ad~VV~~~~  286 (419)
                           .+....++.+||++.|+++|++.+   + ++|++|++|++|+.+ +++.+.|+  . +| +++.||+||++..
T Consensus       221 ~~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~-~~~~~~v~~~~~~g~~~~~ad~VI~a~P  294 (496)
T PLN02576        221 PRLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKN-DDGGYSLTYDTPEGKVNVTAKAVVMTAP  294 (496)
T ss_pred             cccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEEC-CCCcEEEEEecCCCceeEEeCEEEECCC
Confidence                 011235677999999999998765   5 689999999999984 55412333  2 45 4799999999874

>PLN02612 phytoene desaturase

Probab=99.87  E-value=3.9e-20  Score=184.37  Aligned_cols=254  Identities=15%  Similarity=0.135  Sum_probs=156.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      ..+|+|||||++||+||++|+++|++|+|+|+++++||++.++...                   .++.+|.|+|++...
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~-------------------~G~~~D~G~h~~~g~  153 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGA  153 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC-------------------CCCEEcCCceEEeCC
Confidence            4689999999999999999999999999999999999999987521                   268899999999865


Q ss_pred             c-hhhHHHHhcCCcceeeEEEecceeEEe--CCeEE--EecC---Ch----hhhhc-cCCCChHhHHHHHHHHHHHhhcc
Q 014768           84 G-ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--KVPA---TD----MEALK-SPLMGIFEKRRARKFFIYVQDYD  150 (419)
Q Consensus        84 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~~~--~~~~---~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  150 (419)
                      . .+.+++.+.|+.+.+.+......+.+.  .+...  ..|.   ..    .+.+. ...+++.++  +...........
T Consensus       154 ~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~k--l~~~~~~~~~~~  231 (567)
T PLN02612        154 YPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEK--IKFAIGLLPAIV  231 (567)
T ss_pred             CchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHH--HHHHHhhhHHhc
Confidence            4 356666667887665554433333222  12221  1111   10    11110 111122111  111111100000


Q ss_pred             cCCCCccccccCCcccHHHHHHHcCCChhHHH-HHHHHH-hhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEec
Q 014768          151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL  228 (419)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~  228 (419)
                      ...+.   ....+..++.+|+++.+.++.+.+ ++.++. .++..+ ..+.++...+..+..+   +... +.+...++.
T Consensus       232 ~~~~~---~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~S~~~~l~~l~~~---l~~~-~gs~~~~~~  303 (567)
T PLN02612        232 GGQAY---VEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFIN-PDELSMQCILIALNRF---LQEK-HGSKMAFLD  303 (567)
T ss_pred             ccchh---hhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-HHHhhHHHHHHHHHHH---Hhcc-CCceEeeec
Confidence            00000   002457899999999988886654 555443 222211 1011122222221111   1111 234566777


Q ss_pred             CCc-CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          229 YGL-GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       229 gG~-~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      |+. ..++++|++.++++|++|++|++|++|+.++++++++|++ +|+++.||+||++..
T Consensus       304 G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p  363 (567)
T PLN02612        304 GNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP  363 (567)
T ss_pred             CCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence            775 6799999999999999999999999999854666777887 888999999999874

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.86  E-value=6.4e-20  Score=179.38  Aligned_cols=257  Identities=17%  Similarity=0.158  Sum_probs=154.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~   85 (419)
                      +|+|||||++||+||+.|+++|++|+|+|+++.+||+++++...                   .++.+|.|+|++....+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-------------------~g~~~d~G~~~~~~~~~   61 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG-------------------DGNHIEMGLHVFFGCYA   61 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC-------------------CCceEeeceEEecCchH
Confidence            58999999999999999999999999999999999999987321                   27889999999986543


Q ss_pred             -hhHHHHhcCCcceeeEEEecceeEEeCCeEEEe--------cC-ChhhhhccCCCChHhHHHHHHHH---HHHhhcccC
Q 014768           86 -LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKV--------PA-TDMEALKSPLMGIFEKRRARKFF---IYVQDYDEN  152 (419)
Q Consensus        86 -~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  152 (419)
                       +.+.+.+.++.+.+........+...++....+        |- .-...+....+++.++-.+....   .........
T Consensus        62 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~  141 (474)
T TIGR02732        62 NLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY  141 (474)
T ss_pred             HHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence             555555577765543322111122223332111        10 00122333444443322211111   111100000


Q ss_pred             C--CCccccccCCcccHHHHHHHcCCChh-HHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecC
Q 014768          153 D--PKTHEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY  229 (419)
Q Consensus       153 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~g  229 (419)
                      .  ...+.  ...+.++.+|+++++.++. ...++.+++......+..+.++..++..+..    +......+...+++|
T Consensus       142 ~~~~~~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~----~~~~~~~s~~~~~~g  215 (474)
T TIGR02732       142 DGAMKTIR--DLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFML----FAAKTEASKLRMLKG  215 (474)
T ss_pred             chhhhhhh--hhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH----HHhCCCcceeeeecC
Confidence            0  00000  1356899999999988875 5566666543322211111112222211121    121112456778899


Q ss_pred             CcCc-HHHHHHHHHHHcCcEEEcCCccceEEEcC--CC--cEEEEEe-CC---eEEEcCEEEeCCCC
Q 014768          230 GLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS-EG---ETAKCKKVVCDPSY  287 (419)
Q Consensus       230 G~~~-l~~al~~~~~~~G~~i~~~~~V~~I~~~~--~~--~v~gV~~-~g---~~i~ad~VV~~~~~  287 (419)
                      |++. +.+.|++.++++|++|+++++|++|+.++  ++  ++++|++ +|   +++.||+||++.+.
T Consensus       216 ~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~  282 (474)
T TIGR02732       216 SPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV  282 (474)
T ss_pred             CcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence            9777 77889999999999999999999999842  13  3777776 33   56999999998764

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.86  E-value=9.3e-20  Score=178.65  Aligned_cols=254  Identities=15%  Similarity=0.137  Sum_probs=150.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCc-
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG-   84 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~-   84 (419)
                      +|+|||||++||+||++|+++|++|+|+|+++++||+++++...                   .++.+|.|++++.... 
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~-------------------~g~~~d~G~~~~~~~~~   61 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGAYP   61 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC-------------------CCCEEEcCcceeccCCc
Confidence            58999999999999999999999999999999999999987411                   1678999999987653 


Q ss_pred             hhhHHHHhcCCcceeeEEEecceeEEe--CCeEE--EecC--Chhhh----hc-cCCCChHhHHHHHHHHHHHhhcccCC
Q 014768           85 ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--KVPA--TDMEA----LK-SPLMGIFEKRRARKFFIYVQDYDEND  153 (419)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~~~--~~~~--~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (419)
                      .+.+++.+.++.+.+.+......+.+.  ++...  ..+.  .....    +. ....++.++  +.-............
T Consensus        62 ~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  139 (453)
T TIGR02731        62 NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEK--IKFAIGLLPAIVRGQ  139 (453)
T ss_pred             hHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHH--HHHHHHhHHHHhcCc
Confidence            456666667877655443322222211  22221  1111  00111    11 111222121  111111111000000


Q ss_pred             CCccccccCCcccHHHHHHHcCCChhHHH-HHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCC-c
Q 014768          154 PKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG-L  231 (419)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG-~  231 (419)
                      +.   ...++..++.+|+++.+.++.+.+ ++.++.......+....++...+..+..++  ...+  .....+..|+ +
T Consensus       140 ~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~--~~~~--g~~~~~~~g~~~  212 (453)
T TIGR02731       140 KY---VEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL--QERH--GSKMAFLDGAPP  212 (453)
T ss_pred             cc---hhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--hcCC--CCeeEeecCCCh
Confidence            00   002467899999999888888654 555444222111110111112221111111  1111  2223345555 5


Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe-----EEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~-----~i~ad~VV~~~~~  287 (419)
                      ..++++|++.++++|++|++|++|++|..++++++++|++ +|+     ++.||.||++.+.
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            7899999999999999999999999998644667888887 565     7999999998754

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02487 zeta-carotene desaturase

Probab=99.84  E-value=1.7e-19  Score=177.69  Aligned_cols=259  Identities=17%  Similarity=0.139  Sum_probs=156.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~   84 (419)
                      .+|+|||||++||++|+.|+++|++|+|+|+++.+||+++++...                   .++.+|.|+|++....
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~-------------------~g~~~e~G~h~~~~~~  136 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK-------------------NGNHIEMGLHVFFGCY  136 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec-------------------CCcEEecceeEecCCc
Confidence            589999999999999999999999999999999999999988421                   2688999999987543


Q ss_pred             -hhhHHHHhcCCcceeeEEEecceeEEeCCeEEE----ecCChh-----hhhccCCCChHhHHHHHHH---HHHHhhccc
Q 014768           85 -ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK----VPATDM-----EALKSPLMGIFEKRRARKF---FIYVQDYDE  151 (419)
Q Consensus        85 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  151 (419)
                       .+.+++.+.++.+.+.+...-..+...+|....    .|....     ..+....+++.++-.+..-   ...+.... 
T Consensus       137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~-  215 (569)
T PLN02487        137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALV-  215 (569)
T ss_pred             HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhcc-
Confidence             466667777887654432211112223443321    111101     1122223332222111000   00000000 


Q ss_pred             CCCC--ccccccCCcccHHHHHHHcCCChh-HHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEec
Q 014768          152 NDPK--THEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL  228 (419)
Q Consensus       152 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~  228 (419)
                       .+.  ....-..++.++.+|+++++.++. +..++.+........+..+.++..+...+    ..+....+.+-..|++
T Consensus       216 -~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl----~~~~~~~~~~~l~~~~  290 (569)
T PLN02487        216 -DPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIF----SLFATKTEASLLRMLK  290 (569)
T ss_pred             -CccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH----HHHhhcCCcceeeecC
Confidence             000  000002356899999999988774 55566654433222211111111121121    1111111234477999


Q ss_pred             CCcCc-HHHHHHHHHHHcCcEEEcCCccceEEEcC--CC--cEEEEEe--C--CeEEEcCEEEeCCCCC
Q 014768          229 YGLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS--E--GETAKCKKVVCDPSYL  288 (419)
Q Consensus       229 gG~~~-l~~al~~~~~~~G~~i~~~~~V~~I~~~~--~~--~v~gV~~--~--g~~i~ad~VV~~~~~~  288 (419)
                      ||+.. |++++++.++++|++|+++++|++|..+.  ++  ++++|++  +  ++++.||+||++.+..
T Consensus       291 Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        291 GSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             CCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            99995 99999999999999999999999999842  22  4788887  3  3478999999988653

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.82  E-value=5.8e-19  Score=170.66  Aligned_cols=240  Identities=13%  Similarity=0.210  Sum_probs=150.0

Q ss_pred             cceEEEECCCchHHHHhhccccC----CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcce
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~   79 (419)
                      ..+|+|||||++||+||++|++.    |.+|+|+|+++.+||++.+....                  ..+|.+|.|+.+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~------------------~~Gy~~~~G~~~   83 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNP------------------EKGYVARGGREM   83 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccc------------------cCCEEEECCCCc
Confidence            46899999999999999999985    68999999999999999875421                  127999999987


Q ss_pred             eecCchhhHHHHhc------C---CcceeeEEEeccee---E--EeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHH
Q 014768           80 IIANGALVRVLIHT------D---VTKYLYFKAVDGSF---V--YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY  145 (419)
Q Consensus        80 ~~~~~~~~~~l~~~------~---~~~~~~~~~~~~~~---~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (419)
                      ......+.+++...      +   +++++.+.+.++.+   .  +.+|..+..          ....+ ..+....++++
T Consensus        84 ~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~----------~~~~L-~~k~r~~Ll~l  152 (576)
T PRK13977         84 ENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDT----------DKFGL-SKKDRKELLKL  152 (576)
T ss_pred             cchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEEC----------cCCCC-CHHHHHHHHHH
Confidence            44444456665442      1   23556666655553   2  223333321          11222 22333333333


Q ss_pred             HhhcccCCCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEE
Q 014768          146 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI  225 (419)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  225 (419)
                      +..-.       +  .++..++.+|++...+...+..++...   +.-..+  .++.+....+.+|+..+......+++.
T Consensus       153 ~l~~e-------~--~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~---FaF~~w--hSA~E~rry~~rf~~~~~~l~~~s~l~  218 (576)
T PRK13977        153 LLTPE-------E--KLDDKTIEDWFSPEFFETNFWYYWRTM---FAFEKW--HSALEMRRYMHRFIHHIGGLPDLSGLK  218 (576)
T ss_pred             hccCH-------H--HhCCcCHHHHHhhcCchhHHHHHHHHH---HCCchh--hHHHHHHHHHHHHHHhhccCCcccccc
Confidence            22211       1  257899999999876655444443333   222221  234454444445544333321133444


Q ss_pred             EecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEc-CC--CcEEEEEe--CCe-----EEEcCEEEeCCC
Q 014768          226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD-EE--GKVVGVTS--EGE-----TAKCKKVVCDPS  286 (419)
Q Consensus       226 ~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~-~~--~~v~gV~~--~g~-----~i~ad~VV~~~~  286 (419)
                      +.++- ..+++..|.+.++++|++|++|++|++|..+ ++  ++|++|..  +|+     ...+|.||++.+
T Consensus       219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnG  290 (576)
T PRK13977        219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNG  290 (576)
T ss_pred             CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCC
Confidence            55544 5789999999999999999999999999983 23  67888877  332     346788886543

>PLN02268 probable polyamine oxidase

Probab=99.75  E-value=7.9e-18  Score=164.23  Aligned_cols=237  Identities=16%  Similarity=0.172  Sum_probs=125.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC-
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~-   83 (419)
                      .+|||||||++||+||+.|.++|++|+|||+++++||+++|...                    .++.+|+|++++... 
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~--------------------~g~~~d~G~~~i~~~~   60 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYS--------------------FGFPVDMGASWLHGVC   60 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCc--------------------CCcccCCCCeeEeccC
Confidence            37999999999999999999999999999999999999998752                    267899999998642 


Q ss_pred             --chhhHHHHhcCCcceeeEEEecceeEEeCC-eEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccc
Q 014768           84 --GALVRVLIHTDVTKYLYFKAVDGSFVYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (419)
Q Consensus        84 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (419)
                        .++.+++.+.++..+-.  ..+..+.+..+ ..+.+.......+...    ....-...|...+.........     
T Consensus        61 ~~~~~~~l~~~lgl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----  129 (435)
T PLN02268         61 NENPLAPLIGRLGLPLYRT--SGDNSVLYDHDLESYALFDMDGNQVPQE----LVTKVGETFERILEETEKVRDE-----  129 (435)
T ss_pred             CCchHHHHHHHhCCceEec--cCCccccccccccccceecCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHhc-----
Confidence              34666666677642210  11111222211 1000000000000000    0000111122222211110000     


Q ss_pred             cCCcccHHHHHHHcCC-Ch------hHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCc
Q 014768          161 DLTRVTTRELIAKYGL-DD------NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE  233 (419)
Q Consensus       161 ~~~~~~~~~~~~~~~~-~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~  233 (419)
                      ...+.|+.++++.+.. .+      ..++++...+.-.. .-+..++..-.+..   + .....+.|.  ..+..+|++.
T Consensus       130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ls~~~---~-~~~~~~~g~--~~~~~~G~~~  202 (435)
T PLN02268        130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRME-GWFAADADTISLKS---W-DQEELLEGG--HGLMVRGYDP  202 (435)
T ss_pred             cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHH-HHhCCChHhCchhh---c-CCccccCCC--ceeecCCHHH
Confidence            1245678887654321 00      11222221111000 00000110000000   0 000001121  2357789999


Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       234 l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      ++++|++     |.+|++|++|++|... ++++. |++ +|+++.||+||++..
T Consensus       203 l~~~l~~-----~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VIva~P  249 (435)
T PLN02268        203 VINTLAK-----GLDIRLNHRVTKIVRR-YNGVK-VTVEDGTTFVADAAIIAVP  249 (435)
T ss_pred             HHHHHhc-----cCceeCCCeeEEEEEc-CCcEE-EEECCCcEEEcCEEEEecC
Confidence            9998865     5679999999999984 55554 555 788899999998763

>PLN02568 polyamine oxidase

Probab=99.73  E-value=1.6e-16  Score=156.70  Aligned_cols=77  Identities=10%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCC-----CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEcc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDG-----LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDM   75 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G-----~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~   75 (419)
                      |++..||||||||++||+||.+|+++|     ++|+|+|+++++||++++....                    ++.+|+
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~--------------------g~~~d~   61 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG--------------------GERIEM   61 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC--------------------CeEEec
Confidence            455689999999999999999999887     9999999999999999998643                    688999


Q ss_pred             Ccceeec--CchhhHHHHhcCCcc
Q 014768           76 IPKFIIA--NGALVRVLIHTDVTK   97 (419)
Q Consensus        76 gp~~~~~--~~~~~~~l~~~~~~~   97 (419)
                      |++++..  ..++.+++.+.++..
T Consensus        62 G~~~~~g~~~~~~~~l~~~~g~~~   85 (539)
T PLN02568         62 GATWIHGIGGSPVYKIAQEAGSLE   85 (539)
T ss_pred             CCceeCCCCCCHHHHHHHHhCCcc
Confidence            9999984  345666666677643

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.72  E-value=7.8e-16  Score=149.68  Aligned_cols=238  Identities=17%  Similarity=0.150  Sum_probs=137.6

Q ss_pred             HHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch-hhHHHHhcCCc
Q 014768           18 ILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA-LVRVLIHTDVT   96 (419)
Q Consensus        18 ~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~-~~~~l~~~~~~   96 (419)
                      +||++|+++|++|+|||+++++||+++|++.++                  .++.+|.|++++....+ +.+++.+.++.
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g------------------~~~~~d~G~~~~~~~~~~~~~l~~~lgl~   62 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGG------------------LGQTIDNGQHVLLGAYTNLLALLRRIGAE   62 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCC------------------CCcceecCCEEEEcccHHHHHHHHHhCCc
Confidence            589999999999999999999999999986431                  13459999999986543 55555557777


Q ss_pred             ceeeEEEecceeEE-eCCeEEEe-----cCC-h-hhh-hccCCCChHhHHHHHHHHHHHhhcccCCCCccccccCCcccH
Q 014768           97 KYLYFKAVDGSFVY-NKGKVHKV-----PAT-D-MEA-LKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTT  167 (419)
Q Consensus        97 ~~~~~~~~~~~~~~-~~g~~~~~-----~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (419)
                      ....+.. .....+ .++....+     +.. . ... +....++.   ....++...+........   .  .....++
T Consensus        63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~---~--~~~~~s~  133 (419)
T TIGR03467        63 PRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSW---ADKLALARALLALRRTRF---R--ALDDTTV  133 (419)
T ss_pred             hhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCH---HHHHHHHHHHHHHHhcCc---c--ccCCCCH
Confidence            5533211 111112 23322111     110 0 011 11122222   222233333222211000   0  2357899


Q ss_pred             HHHHHHcCCChhHHH-HHHHHHhhccCCCCCCCcHHHHHHHHHHHHH-HhhhccCCCeEEEecCCcCcHH-HHHHHHHHH
Q 014768          168 RELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAE-SIARFQGGSPYIYPLYGLGELP-QAFARLSAV  244 (419)
Q Consensus       168 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~p~gG~~~l~-~al~~~~~~  244 (419)
                      .+|+++.+.++.+.+ ++.+.......    .++..-....+...+. .+........+++|+||++.+. ++|++.+++
T Consensus       134 ~~~l~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~  209 (419)
T TIGR03467       134 GDWLQAAGQSERLIERLWEPLLLSALN----TPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDS  209 (419)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHH
Confidence            999999877776655 44443322111    1221111111111111 1111111335889999988876 558999989


Q ss_pred             cCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEeCCCC
Q 014768          245 YGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSY  287 (419)
Q Consensus       245 ~G~~i~~~~~V~~I~~~~~~~v~gV~-~~g~~i~ad~VV~~~~~  287 (419)
                      .|++|++|++|++|..+ ++++..+. .+|+++.||+||++.+.
T Consensus       210 ~g~~i~~~~~V~~i~~~-~~~~~~~~~~~g~~~~~d~vi~a~p~  252 (419)
T TIGR03467       210 RGGEVRLGTRVRSIEAN-AGGIRALVLSGGETLPADAVVLAVPP  252 (419)
T ss_pred             cCCEEEcCCeeeEEEEc-CCcceEEEecCCccccCCEEEEcCCH
Confidence            99999999999999984 66654433 37888999999998743

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02529 lysine-specific histone demethylase 1

Probab=99.70  E-value=6.4e-16  Score=155.58  Aligned_cols=234  Identities=15%  Similarity=0.153  Sum_probs=133.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      ..||+|||||++||+||..|+++|++|+|+|+++++||++.|...+       ..+         ..+.+|+|++++...
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~-------~~g---------~~~~~DlGaswi~g~  223 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMG-------RKG---------QFAAVDLGGSVITGI  223 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeeccc-------CCC---------CceEEecCCeecccc
Confidence            4799999999999999999999999999999999999999988632       000         125789999999754


Q ss_pred             c--hhhHHHHhcCCcceeeEEEeccee--EEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768           84 G--ALVRVLIHTDVTKYLYFKAVDGSF--VYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (419)
Q Consensus        84 ~--~~~~~l~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (419)
                      .  ++..+..+.++.-+    .+++.+  .+.+|......   .+.   .+...+. +.+.++..+.....    .    
T Consensus       224 ~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~---~~~---~~~~~~~-~~l~~~~~l~~~~~----~----  284 (738)
T PLN02529        224 HANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKE---IDS---NIEFIFN-KLLDKVTELRQIMG----G----  284 (738)
T ss_pred             ccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchh---hhh---hHHHHHH-HHHHHHHHHHHhcc----c----
Confidence            2  34444444454321    222222  23455433111   000   0000111 11222222111111    0    


Q ss_pred             ccCCcccHHHHHHHcC------CChhHHHHHHHHHh-hccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcC
Q 014768          160 MDLTRVTTRELIAKYG------LDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLG  232 (419)
Q Consensus       160 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~  232 (419)
                       .....|+.+++++..      +++..++++..... +....    ......++. ..+.. -..+..........||++
T Consensus       285 -~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~----~~~~s~LSl-~~~~~-~~~~e~~G~~~~i~GG~~  357 (738)
T PLN02529        285 -FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYAN----AGCLSDLSA-AYWDQ-DDPYEMGGDHCFLAGGNW  357 (738)
T ss_pred             -CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceec----CCChHHhhh-hHhhh-ccccccCCceEEECCcHH
Confidence             134677888776542      34444444443222 11110    011111111 11110 011211234567899999


Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~  286 (419)
                      +|+++|++.     ..|++|++|++|..+ ++.+ .|+++++++.||+||++..
T Consensus       358 ~Li~aLA~~-----L~IrLnt~V~~I~~~-~dGV-tV~t~~~~~~AD~VIVTVP  404 (738)
T PLN02529        358 RLINALCEG-----VPIFYGKTVDTIKYG-NDGV-EVIAGSQVFQADMVLCTVP  404 (738)
T ss_pred             HHHHHHHhc-----CCEEcCCceeEEEEc-CCeE-EEEECCEEEEcCEEEECCC
Confidence            999999863     459999999999984 5554 3556777899999999874

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.70  E-value=8e-16  Score=155.57  Aligned_cols=237  Identities=14%  Similarity=0.165  Sum_probs=132.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      ..+|+|||||++||+||..|++.|++|+|+|+++++||++.+....+                ....+.+|+|++++...
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g----------------~~~~~~~d~Gas~i~g~  301 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKG----------------DGVVAAADLGGSVLTGI  301 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCC----------------CCcceeccCCceeecCC
Confidence            47899999999999999999999999999999999999999886421                11135789999998754


Q ss_pred             c--hhhHHHHhcCCcceeeEEEecce--eEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhccc-CCCCccc
Q 014768           84 G--ALVRVLIHTDVTKYLYFKAVDGS--FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE-NDPKTHE  158 (419)
Q Consensus        84 ~--~~~~~l~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (419)
                      .  ++..++.+.++..+    .++..  +.+.+|..+.....      ...    + ..+.+++..+..+.. ..+..  
T Consensus       302 ~~npl~~l~~~lgl~~~----~~~~~~~~~~~dG~~~~~~~~------~~v----~-~~f~~lL~~~~klr~~~~~~~--  364 (808)
T PLN02328        302 NGNPLGVLARQLGLPLH----KVRDICPLYLPDGKAVDAEID------SKI----E-ASFNKLLDRVCKLRQAMIEEV--  364 (808)
T ss_pred             CccHHHHHHHHcCCceE----ecCCCceEEeCCCcCcchhhh------hhH----H-HHHHHHHHHHHHHHHhhhhcc--
Confidence            2  34445555665422    22222  23455654321100      000    0 111122222111110 00000  


Q ss_pred             cccCCcccHHHHHHHc------CCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcC
Q 014768          159 GMDLTRVTTRELIAKY------GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLG  232 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~  232 (419)
                        .-.+.++.++++.+      ..++..+.++...+...   .+........++. ..+.. -..+..........||+.
T Consensus       365 --~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanl---E~~~gs~ls~LSl-~~w~q-d~~~e~~G~~~~v~GG~~  437 (808)
T PLN02328        365 --KSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANL---EYANASLMSNLSM-AYWDQ-DDPYEMGGDHCFIPGGND  437 (808)
T ss_pred             --cccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH---hccchhhHHHHHh-hhhhc-cccccCCCeEEEECCcHH
Confidence              01245677766532      22333333333222111   0111111111110 00100 001211233567789999


Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~  287 (419)
                      .|+++|++.+     .|++|++|++|..+ ++.+ .|..+|+++.||+||++...
T Consensus       438 ~Li~aLa~~L-----~I~ln~~V~~I~~~-~dgV-~V~~~G~~~~AD~VIvTvPl  485 (808)
T PLN02328        438 TFVRELAKDL-----PIFYERTVESIRYG-VDGV-IVYAGGQEFHGDMVLCTVPL  485 (808)
T ss_pred             HHHHHHHhhC-----CcccCCeeEEEEEc-CCeE-EEEeCCeEEEcCEEEECCCH
Confidence            9999998765     38999999999984 5544 34458889999999998743

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.69  E-value=2.6e-15  Score=132.94  Aligned_cols=247  Identities=17%  Similarity=0.187  Sum_probs=136.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec-
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA-   82 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~-   82 (419)
                      ..+|+|||+|++||+||+.|+++ ++|+++|+++++||+++|...+       .++         .++.+|.|-.++.. 
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~-------~d~---------~g~~vDtGfiVyn~~   70 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGN-------TDG---------GGVFVDTGFIVYNER   70 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeecc-------ccC---------CceeecceeEEecCC
Confidence            46899999999999999999987 7999999999999999998532       111         15778888777754 


Q ss_pred             Cc-hhhHHHHhcCCcce---eeEEE-ecc-eeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCc
Q 014768           83 NG-ALVRVLIHTDVTKY---LYFKA-VDG-SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT  156 (419)
Q Consensus        83 ~~-~~~~~l~~~~~~~~---~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (419)
                      .. .+..++...|+...   ++|.- .+. .+-|.....   + ...-..+..++...-...+...+.+.+.-  ..+  
T Consensus        71 tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~g~tg---l-~~L~aqk~n~l~pRf~~mlaeiLrf~r~~--~~~--  142 (447)
T COG2907          71 TYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYSGLTG---L-AGLLAQKRNLLRPRFPCMLAEILRFYRSD--LAP--  142 (447)
T ss_pred             CcchHHHHHHHcCCCCcccceeEEEEecCCceeeccCCC---c-cchhhccccccchhHHHHHHHHHHHhhhh--ccc--
Confidence            22 35555555555432   22211 111 111211100   0 00111112221110111111112221110  011  


Q ss_pred             cccccCCcccHHHHHHHcCCChhHHH-HHHHHH-hhccCCCCCCCcHHHHHHH----HHHHHHHhh-hccCCCeEE-Eec
Q 014768          157 HEGMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKR----MKLYAESIA-RFQGGSPYI-YPL  228 (419)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~g~~~~~-~p~  228 (419)
                      .........++.+|+++.+++..+.+ ++.++. +.+..      |...+..+    +..|+..-+ .+.-+.|.| .+.
T Consensus       143 ~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwst------p~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~  216 (447)
T COG2907         143 SDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWST------PLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVA  216 (447)
T ss_pred             hhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcC------cHhhhhhhhHHHHHHHHhccCceecCCCCceeEcc
Confidence            11112357899999999999877643 344333 33321      22222111    111211111 111244544 456


Q ss_pred             CCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCC
Q 014768          229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP  285 (419)
Q Consensus       229 gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~  285 (419)
                      ||..+.++.|....   +++|.++++|.+|..-.+| +..+..+|++-++|+||.++
T Consensus       217 ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlPdG-v~l~~~~G~s~rFD~vViAt  269 (447)
T COG2907         217 GGSRAYVQRLAADI---RGRIETRTPVCRLRRLPDG-VVLVNADGESRRFDAVVIAT  269 (447)
T ss_pred             cchHHHHHHHhccc---cceeecCCceeeeeeCCCc-eEEecCCCCccccceeeeec
Confidence            88888888887544   7889999999999975455 33344479999999977543

>PLN02676 polyamine oxidase

Probab=99.68  E-value=1.8e-15  Score=148.31  Aligned_cols=240  Identities=15%  Similarity=0.193  Sum_probs=126.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~   81 (419)
                      ..+||+|||||++||+||..|+++|. +|+|+|+++++||++.+....                    ++.+|.|++++.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~--------------------g~~~d~g~~~~~   84 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA--------------------GVSVELGANWVE   84 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC--------------------CeEEecCCEEEE
Confidence            35899999999999999999999998 699999999999999987532                    688999999995


Q ss_pred             c-----CchhhHHHHhcCCcceee-EEEecceeEE-eCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCC
Q 014768           82 A-----NGALVRVLIHTDVTKYLY-FKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP  154 (419)
Q Consensus        82 ~-----~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (419)
                      .     ..++.+++.+.++..... +.. .....+ .+|...  +   .+.. ..    +. ..+..+.+++..+.....
T Consensus        85 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~~g~~~--~---~~~~-~~----~~-~~~~~~~~~~~~~~~~~~  152 (487)
T PLN02676         85 GVGGPESNPIWELANKLKLRTFYSDFDN-LSSNIYKQDGGLY--P---KKVV-QK----SM-KVADASDEFGENLSISLS  152 (487)
T ss_pred             cccCcccChHHHHHHhcCCceeecCccc-cceeEECCCCCCC--C---HHHH-HH----HH-HHHHHHHHHHHHHHHhhc
Confidence            3     345666666666653211 110 011122 133322  1   0000 00    00 111222222222211000


Q ss_pred             CccccccCCcccHH--HHHHHcC-CChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEe-cCC
Q 014768          155 KTHEGMDLTRVTTR--ELIAKYG-LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-LYG  230 (419)
Q Consensus       155 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p-~gG  230 (419)
                          .....+.++.  +.+.... ... ....+.......   .+...+....+..+ ........+ |...+... ++|
T Consensus       153 ----~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~S~~~~-~~~~~~~~~-g~~~~~~~~~~G  222 (487)
T PLN02676        153 ----AKKAVDISILTAQRLFGQVPKTP-LEMVIDYYNYDY---EFAEPPRVTSLKNT-EPNPTFVDF-GEDEYFVADPRG  222 (487)
T ss_pred             ----ccCCCCccHHHHHHHHhhCCCCH-HHHHHHHHhccc---eeccCccccchhhc-CcccccccC-CCceEEeecCCC
Confidence                0012334442  2233221 111 111111111100   00011111110000 000001112 22223222 689


Q ss_pred             cCcHHHHHHHHHHHc------CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          231 LGELPQAFARLSAVY------GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       231 ~~~l~~al~~~~~~~------G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      +++|+++|++.+...      +.+|++|++|++|..+ ++.+ .|++ +|++++||+||++..
T Consensus       223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV-~V~~~~G~~~~a~~VIvtvP  283 (487)
T PLN02676        223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGV-TVKTEDGSVYRAKYVIVSVS  283 (487)
T ss_pred             HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcE-EEEECCCCEEEeCEEEEccC
Confidence            999999999876443      3679999999999984 6655 4555 788999999999874

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.66  E-value=4.9e-16  Score=143.68  Aligned_cols=45  Identities=29%  Similarity=0.397  Sum_probs=43.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN   47 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   47 (419)
                      +..||||||+|++||+||+.|.++|++|+|+|.++++|||+.+..
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r   50 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTAR   50 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEe
Confidence            468999999999999999999999999999999999999999875

>PLN03000 amine oxidase

Probab=99.64  E-value=9.5e-15  Score=147.79  Aligned_cols=237  Identities=15%  Similarity=0.180  Sum_probs=126.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      ..+|+|||||++||+||..|++.|++|+|+|+++++||++.|....                |...++.+|+|++++...
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~----------------g~~~~~~~DlGas~i~g~  247 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKME----------------ANRVGAAADLGGSVLTGT  247 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceeccc----------------CCCCceEeecCCeEEeCC
Confidence            4789999999999999999999999999999999999999998642                112257899999999765


Q ss_pred             c--hhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccccc
Q 014768           84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (419)
Q Consensus        84 ~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (419)
                      .  ++..++.+.++.-+ .... ...+.+.+|+..  +......+...+..++++  ..++...+....           
T Consensus       248 ~~npl~~L~~qlgl~l~-~~~~-~~~ly~~~Gk~v--~~~~~~~ve~~fn~lLd~--~~~lr~l~~~~~-----------  310 (881)
T PLN03000        248 LGNPLGIIARQLGSSLY-KVRD-KCPLYRVDGKPV--DPDVDLKVEVAFNQLLDK--ASKLRQLMGDVS-----------  310 (881)
T ss_pred             CccHHHHHHHHcCCcee-ecCC-CCeEEEeCCcCC--chhhhhhHHHHHHHHHHH--HHHHHHHhcccC-----------
Confidence            3  24444455565522 1111 112233456543  111000000000001110  111111111110           


Q ss_pred             CCcccHHHHHH---Hc---CCChhHHHHHHHHHh-hccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcH
Q 014768          162 LTRVTTRELIA---KY---GLDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL  234 (419)
Q Consensus       162 ~~~~~~~~~~~---~~---~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l  234 (419)
                       .+.++.++++   .+   .+......++...+. +...    .......+..  .+......+.........+||++.|
T Consensus       311 -~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~----~as~ls~LSl--~~wdqd~~~e~~G~~~~v~GG~~~L  383 (881)
T PLN03000        311 -MDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYA----NAGLVSKLSL--AFWDQDDPYDMGGDHCFLPGGNGRL  383 (881)
T ss_pred             -cCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcc----cccCHHHHHH--HHhhhcccccCCCceEEeCCCHHHH
Confidence             1223332221   11   122222222221111 1110    1111111110  0111001121122355678999999


Q ss_pred             HHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768          235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (419)
Q Consensus       235 ~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~  287 (419)
                      +++|++.+     .|+++++|++|..+ ++.+ .|+++++++.||+||++...
T Consensus       384 ieaLa~~L-----~I~Ln~~Vt~I~~~-~dgV-~V~~~~~~~~AD~VIvTVPl  429 (881)
T PLN03000        384 VQALAENV-----PILYEKTVQTIRYG-SNGV-KVIAGNQVYEGDMVLCTVPL  429 (881)
T ss_pred             HHHHHhhC-----CcccCCcEEEEEEC-CCeE-EEEECCcEEEeceEEEcCCH
Confidence            99999865     39999999999984 5554 35555678999999998743

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.63  E-value=2e-15  Score=146.48  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=60.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~   82 (419)
                      +..+|||||||++||+||..|.+.|++|+|||+++++|||.+|+...                   .+-.+|+|.+++..
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~-------------------~~~~vd~Gas~~~g   74 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSE-------------------GGDHVDLGASVLTG   74 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecC-------------------CCCeeecCCceecC
Confidence            35799999999999999999999999999999999999999998632                   12358999999986


Q ss_pred             Cch--hhHHHHhcCCcc
Q 014768           83 NGA--LVRVLIHTDVTK   97 (419)
Q Consensus        83 ~~~--~~~~l~~~~~~~   97 (419)
                      ...  +.-+..+.++..
T Consensus        75 ~~~npl~~l~~qlgl~~   91 (501)
T KOG0029|consen   75 VYNNPLALLSKQLGLEL   91 (501)
T ss_pred             cCccHHHHHHHHhCccc
Confidence            543  333334456554

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.59  E-value=2.6e-13  Score=123.77  Aligned_cols=233  Identities=15%  Similarity=0.126  Sum_probs=140.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeE--EEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKV--LHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V--~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~   81 (419)
                      ..+|+|||||++||++|++|++++.+|  +++|+.+++||..+|..-                   .+++.||.||..+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~-------------------~ng~ifE~GPrtlr   71 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRM-------------------QNGFIFEEGPRTLR   71 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccC-------------------CCceeeccCCCccC
Confidence            468999999999999999999999765  559999999999998321                   24899999999998


Q ss_pred             cCch----hhHHHHhcCCcceeeEEEec-c----eeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccC
Q 014768           82 ANGA----LVRVLIHTDVTKYLYFKAVD-G----SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN  152 (419)
Q Consensus        82 ~~~~----~~~~l~~~~~~~~~~~~~~~-~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (419)
                      .-++    ..+++.++++++.+.....+ +    .+.+..|++..+|.+-.......+..+ .+.-+..|+.....-...
T Consensus        72 pag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~-~k~L~~a~l~e~fr~~~~  150 (491)
T KOG1276|consen   72 PAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPF-GKPLLEAFLRELFRKKVS  150 (491)
T ss_pred             cCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcc-cchhHHHHHhhhccccCC
Confidence            7766    77777778988653333222 2    345677888888854222222222222 223333333321111111


Q ss_pred             CCCccccccCCcccHHHHHHHcCCChhHHH-HHHHHHhhccCCCCCCCcHHHHHHHHHHHH-----------HH-hh---
Q 014768          153 DPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYA-----------ES-IA---  216 (419)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~---  216 (419)
                      .+       -.++++.+|+++.. -+++.+ ++.+++.-...++.-.-+....|..+...-           .+ +.   
T Consensus       151 ~~-------~~dESV~sF~~Rrf-G~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~  222 (491)
T KOG1276|consen  151 DP-------SADESVESFARRRF-GKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKR  222 (491)
T ss_pred             CC-------CccccHHHHHHHhh-hHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Confidence            11       25788999887652 244433 344444322222211112223322221111           00 00   


Q ss_pred             -----------hccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCC
Q 014768          217 -----------RFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEG  264 (419)
Q Consensus       217 -----------~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~  264 (419)
                                 .-.+..+.+--+||+..++++|.+.+.+.++.|.+.-++..+...+.+
T Consensus       223 ~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~  281 (491)
T KOG1276|consen  223 TKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSG  281 (491)
T ss_pred             CCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccC
Confidence                       000122334557899999999999999888889999999888754334

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=1.7e-14  Score=136.15  Aligned_cols=245  Identities=18%  Similarity=0.176  Sum_probs=134.7

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCc-
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG-   84 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~-   84 (419)
                      +|+|+|||++||+||++|+++|++|+|+|+++++||++.++...                   .+...+.|-|+|..+. 
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~-------------------dg~~~E~glh~f~~~Y~   62 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS-------------------DGNHVEHGLHVFFGCYY   62 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC-------------------CCCeeeeeeEEechhHH
Confidence            79999999999999999999999999999999999999998642                   2677788888887654 


Q ss_pred             hhhHHHHhcCCcceeeEEEecceeEE---eCCeEEEecCC-------h-hhhhccCCCChHhHHHHHHHHHHHhhcccCC
Q 014768           85 ALVRVLIHTDVTKYLYFKAVDGSFVY---NKGKVHKVPAT-------D-MEALKSPLMGIFEKRRARKFFIYVQDYDEND  153 (419)
Q Consensus        85 ~~~~~l~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (419)
                      .++++|.+...+..+.++.....+.-   ..|..-+++..       . ...+....+   ..+...+|.--+-..... 
T Consensus        63 n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~g-  138 (485)
T COG3349          63 NLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQL---PRREKIRFVLRLGDAPIG-  138 (485)
T ss_pred             HHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhcccc---CHHHHhHHhhccccccch-
Confidence            47777776666544444332222211   12221111100       0 001111111   111111111111001000 


Q ss_pred             CCccccccCCcccHHHHHHHcCCChhH-HHHHHH-HHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCC-
Q 014768          154 PKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGH-ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG-  230 (419)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG-  230 (419)
                       ......+++..++.+|+++.+.+... ++.+.+ ...+...... .-+.+-.+..+..+  .+..+ +.+-....+|+ 
T Consensus       139 -~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e-~~sa~~~lt~~~~~--~~~~~-~~~i~~~~~g~~  213 (485)
T COG3349         139 -ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPE-GCSARFFLTILNLF--LIVTL-EASILRNLRGSP  213 (485)
T ss_pred             -hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcc-cCcchhHHHHHHHH--HHhcc-CcchhhhhcCCC
Confidence             01111246789999999987765432 333322 2222221100 11111111111111  12222 21222344555 


Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcC---CCcEEEEEeCCeEEEc
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDE---EGKVVGVTSEGETAKC  278 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~---~~~v~gV~~~g~~i~a  278 (419)
                      ...+...+.+.+.+.|.+++.+.+|+.|..+.   +.+++++...+....+
T Consensus       214 ~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~  264 (485)
T COG3349         214 DEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQ  264 (485)
T ss_pred             cceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEe
Confidence            45678889999999999999999999998753   4567777765544333

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.54  E-value=8.8e-14  Score=126.79  Aligned_cols=64  Identities=19%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             CCeEEEec-CCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          221 GSPYIYPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       221 ~~~~~~p~-gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      ..+-++|. .....|+++|.+.+++.|++++++++|.+|+.+ + ....+.+ +|+++.||.+|.+.+
T Consensus        99 ~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~g~~i~~d~lilAtG  164 (408)
T COG2081          99 DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSSGETVKCDSLILATG  164 (408)
T ss_pred             cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCCCCEEEccEEEEecC
Confidence            44456787 778899999999999999999999999999984 5 3456677 677899999876554

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.52  E-value=2.9e-14  Score=139.19  Aligned_cols=70  Identities=11%  Similarity=0.146  Sum_probs=53.3

Q ss_pred             chHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch-hhHHHHh
Q 014768           14 LKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA-LVRVLIH   92 (419)
Q Consensus        14 i~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~-~~~~l~~   92 (419)
                      |+||+||++|+++|++|+|||+++++||+++|++.+       .           .++.+|+|++++..... +.+.+.+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~-------~-----------~g~~~e~G~~~~~~~~~~~~~~~~~   62 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFD-------N-----------PGFTFELGAHRFFGMYPNLLNLIDE   62 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEET-------T-----------TTEEEESSS-EEETTSHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCC-------c-----------cceeecCCcccccccchhhHHHHHH
Confidence            689999999999999999999999999999999753       0           16999999999985543 4555555


Q ss_pred             cCCcceeeE
Q 014768           93 TDVTKYLYF  101 (419)
Q Consensus        93 ~~~~~~~~~  101 (419)
                      .++...+..
T Consensus        63 l~~~~~~~~   71 (450)
T PF01593_consen   63 LGLELSLET   71 (450)
T ss_dssp             HTHHTTEEE
T ss_pred             hhhcccccc
Confidence            566433333

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.51  E-value=2.1e-14  Score=100.40  Aligned_cols=55  Identities=22%  Similarity=0.483  Sum_probs=49.2

Q ss_pred             EECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            9 VLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         9 IIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      |||||++||+||++|+++|++|+|+|+++.+||++++...+                    ++.+|.|++++...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~d~g~~~~~~~   55 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP--------------------GYRFDLGAHYFFPP   55 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET--------------------TEEEETSS-SEEET
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC--------------------CEEEeeccEEEeCC
Confidence            89999999999999999999999999999999999998643                    69999999999874

...

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.47  E-value=5.3e-13  Score=126.80  Aligned_cols=67  Identities=21%  Similarity=0.259  Sum_probs=55.3

Q ss_pred             CeEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          222 SPYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       222 ~~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      .+++.+.+|   ...+.++|.+.+++.|++|+++++|++|..+ ++++++|.++.+.+.||.||.+++++.
T Consensus       134 ~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  134 GGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGEIRADRVVLAAGAWS  203 (358)
T ss_dssp             EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEEEEECEEEE--GGGH
T ss_pred             hhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccccccceeEecccccc
Confidence            456677888   7899999999999999999999999999994 899998999444599999999887764

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.47  E-value=3e-13  Score=128.66  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=48.1

Q ss_pred             eEEEecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          223 PYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       223 ~~~~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      +..||.-. ...++++|.+.+++.|++|+++++|++|+.+ ++++..|++ +++++.||.||.+.+
T Consensus        99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtG  163 (409)
T PF03486_consen   99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATG  163 (409)
T ss_dssp             TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE---
T ss_pred             CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecC
Confidence            34577653 6789999999999999999999999999984 888889999 999999999887653

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PLN02976 amine oxidase

Probab=99.46  E-value=2.2e-12  Score=134.73  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=51.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~   82 (419)
                      .+||+|||||++|+++|+.|+++|++|+|||+++.+||++.+....                   .++.+|+|++++..
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~-------------------~g~pvDlGas~i~G  752 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSS-------------------LSVPVDLGASIITG  752 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeecccc-------------------CCceeccCcEEEec
Confidence            4789999999999999999999999999999999999999876421                   25677888877764

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.46  E-value=7.2e-13  Score=122.83  Aligned_cols=72  Identities=17%  Similarity=0.362  Sum_probs=58.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCC-CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~   81 (419)
                      ...+|||||||++||+||-+|-+.| .+|+|+|+.+++|||.+|+.+.                    .-.+|+|.+|+.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~--------------------d~~ielGAqwih   79 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFA--------------------DGVIELGAQWIH   79 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcC--------------------CCeEeecceeec
Confidence            4568999999999999999999766 6899999999999999999764                    347899999998


Q ss_pred             c-Cc-hhhHHHHhcC
Q 014768           82 A-NG-ALVRVLIHTD   94 (419)
Q Consensus        82 ~-~~-~~~~~l~~~~   94 (419)
                      . .+ ++.++..+.|
T Consensus        80 G~~gNpVY~la~~~g   94 (498)
T KOG0685|consen   80 GEEGNPVYELAKEYG   94 (498)
T ss_pred             CCCCChHHHHHHHhC
Confidence            6 33 4555554443

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.45  E-value=1e-12  Score=123.37  Aligned_cols=94  Identities=17%  Similarity=0.236  Sum_probs=65.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceE-EccCcceeecC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYN-VDMIPKFIIAN   83 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~-~d~gp~~~~~~   83 (419)
                      +||+|||||++||++|.+|++.|.+|+|+|+++.+||.|.+....                    ++. .+.|++++...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~--------------------g~~~~~~G~h~f~t~   61 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDE--------------------TILFHQYGPHIFHTN   61 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCC--------------------CceEEeecceeEecC
Confidence            699999999999999999999999999999999999988775321                    333 47889988766


Q ss_pred             chhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCC
Q 014768           84 GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT  121 (419)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  121 (419)
                      ...+..++. .+...-.+.  .....+.+|+.+.+|.+
T Consensus        62 ~~~v~~~~~-~~~~~~~~~--~~~~~~~~g~~~~~P~~   96 (377)
T TIGR00031        62 NQYVWDYIS-PFFELNNYQ--HRVLALYNNLDLTLPFN   96 (377)
T ss_pred             cHHHHHHHH-hhcccccee--EEEEEEECCeEEccCCC
Confidence            543333222 111111111  11233567888888864

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.42  E-value=6.1e-12  Score=118.61  Aligned_cols=65  Identities=25%  Similarity=0.294  Sum_probs=52.8

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeE-EEcCEEEeCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSYL  288 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~-i~ad~VV~~~~~~  288 (419)
                      +.+.|.+|   ...++.+|++.+.++|+++++|++|+.|+.. ++.++.+.+ +|++ ++|+.||.+++..
T Consensus       141 al~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~-~dg~~~~~~~~g~~~~~ak~Vin~AGl~  210 (429)
T COG0579         141 ALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQ-SDGVFVLNTSNGEETLEAKFVINAAGLY  210 (429)
T ss_pred             eEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEe-CCceEEEEecCCcEEEEeeEEEECCchh
Confidence            45566666   6789999999999999999999999999984 544556666 7766 9999999888654

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.37  E-value=5.2e-12  Score=121.61  Aligned_cols=64  Identities=16%  Similarity=0.210  Sum_probs=50.8

Q ss_pred             EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.|.+|   ...+.++|.+.+++.|++++++++|++|..+ ++++ .|.++++++.||.||.+++.+.
T Consensus       138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQGEYEARTLINCAGLMS  204 (393)
T ss_pred             EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCCEEEeCEEEECCCcch
Confidence            4455555   3689999999999999999999999999873 5554 5666555899999998887764

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.33  E-value=4.1e-11  Score=115.02  Aligned_cols=64  Identities=19%  Similarity=0.146  Sum_probs=49.5

Q ss_pred             EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ++.|.+|   ...+.++|.+.+++.|++++.+++|++|..+ ++++ .|+++++++.||.||++++.+.
T Consensus       134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKGSYQANKLVVTAGAWT  200 (380)
T ss_pred             EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCcch
Confidence            3455555   3578899999999999999999999999873 6655 4666555899999888777653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.32  E-value=1.1e-11  Score=121.92  Aligned_cols=59  Identities=24%  Similarity=0.307  Sum_probs=48.5

Q ss_pred             ecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC-----CeEEEcCEEEeCCC
Q 014768          227 PLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDPS  286 (419)
Q Consensus       227 p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~-----g~~i~ad~VV~~~~  286 (419)
                      +.+|...+.+.|.+.+++.|++|+++++|++|.. +++++++|...     ...+.|+.||.+++
T Consensus       126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtG  189 (466)
T PRK08274        126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAG  189 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCC
Confidence            3455567899999999999999999999999998 48889888762     34689999987664

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.31  E-value=1.9e-11  Score=118.71  Aligned_cols=66  Identities=17%  Similarity=0.227  Sum_probs=54.2

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      +.++|.+|   ...++++|.+.+++.|++|+++++|++|+.+ ++++++|++++.++.||.||.+++.+.
T Consensus       189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~~~~a~~VV~a~G~~~  257 (416)
T PRK00711        189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGGVITADAYVVALGSYS  257 (416)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCcEEeCCEEEECCCcch
Confidence            45566655   4478899999999999999999999999984 777778888777899999998887664

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.30  E-value=4.5e-11  Score=119.28  Aligned_cols=66  Identities=18%  Similarity=0.086  Sum_probs=52.9

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCCCCCc
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~~~~~~  290 (419)
                      ++++| .|   ...++.++++.+.++|++++++++|++|.. +++++++|++    ++  .+|+||.||.+++.|..
T Consensus       138 a~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~  212 (546)
T PRK11101        138 AVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ  212 (546)
T ss_pred             EEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence            34455 34   356888899999999999999999999998 4888888875    23  47999999999988754

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.29  E-value=7.3e-11  Score=113.12  Aligned_cols=65  Identities=26%  Similarity=0.262  Sum_probs=49.5

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      +.+.|.+|   ...++.++.+.+.+.|++++++++|++|..+ ++.+ .|++++.++.||.||.+++.+.
T Consensus       137 a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~~  204 (376)
T PRK11259        137 ALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDGV-TVTTADGTYEAKKLVVSAGAWV  204 (376)
T ss_pred             EEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCeE-EEEeCCCEEEeeEEEEecCcch
Confidence            34455555   3568888888888899999999999999983 6644 5666444799999998877663

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.27  E-value=1.1e-10  Score=114.44  Aligned_cols=63  Identities=19%  Similarity=0.166  Sum_probs=48.6

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~  288 (419)
                      +.+.|.+|   ..+++++|++.+++.|++|+.+++|++|+.  ++. +.|++++.++.||.||++++.+
T Consensus       171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~~-~~v~t~~g~v~A~~VV~Atga~  236 (460)
T TIGR03329       171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--GQP-AVVRTPDGQVTADKVVLALNAW  236 (460)
T ss_pred             EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--CCc-eEEEeCCcEEECCEEEEccccc
Confidence            34566665   467899999999999999999999999974  333 4577755579999988776554

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.26  E-value=8.9e-11  Score=113.79  Aligned_cols=66  Identities=18%  Similarity=0.185  Sum_probs=49.4

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C----CeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E----GETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~----g~~i~ad~VV~~~~~~~  289 (419)
                      ++++|..|   ...++++|.+.+++.|++|+.+++|++|..+ ++.++.... .    +.+++||.||.+++.+.
T Consensus       185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            45566654   3467888999999999999999999999873 665543222 2    23799999999888764

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.25  E-value=6.9e-11  Score=113.79  Aligned_cols=67  Identities=25%  Similarity=0.238  Sum_probs=52.9

Q ss_pred             eEEEecCC--cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C---Ce--EEEcCEEEeCCCCCCcc
Q 014768          223 PYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---GE--TAKCKKVVCDPSYLPNK  291 (419)
Q Consensus       223 ~~~~p~gG--~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~---g~--~i~ad~VV~~~~~~~~~  291 (419)
                      ++.|+.+=  -..++-..++.+.++|+++++.++|+++.. +++ +++|+. |   |+  +++|+.||.++++|.+.
T Consensus       153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~  227 (532)
T COG0578         153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE  227 (532)
T ss_pred             eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence            44455332  236888889999999999999999999998 477 999986 2   33  58899999999998644

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.22  E-value=2e-10  Score=112.30  Aligned_cols=66  Identities=14%  Similarity=0.132  Sum_probs=52.3

Q ss_pred             eEEEecCC----cCcHHHHHHHHHHH----cC--cEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG----LGELPQAFARLSAV----YG--GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG----~~~l~~al~~~~~~----~G--~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      +.+.|..|    ...++++|++.+++    .|  ++|+++++|++|.. +++..+.|+++..++.||.||++++.+.
T Consensus       198 Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-~~~~~~~V~T~~G~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        198 ALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-SNDSLYKIHTNRGEIRARFVVVSACGYS  273 (497)
T ss_pred             EEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-cCCCeEEEEECCCEEEeCEEEECcChhH
Confidence            45566543    36799999999998    78  78999999999998 4566777888555799999998887663

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=99.22  E-value=4.8e-10  Score=105.93  Aligned_cols=240  Identities=13%  Similarity=0.192  Sum_probs=127.8

Q ss_pred             cceEEEECCCchHHHHhhccccC----CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcce
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~   79 (419)
                      +.++-|||+||++|+||.+|-|.    |.+|+|||+.+.+||.+.+....                  ..+|..-.|-..
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~------------------~~GYv~RgGR~~   63 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDP------------------ENGYVIRGGRMM   63 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCC------------------CCCeeecCCccc
Confidence            45789999999999999999875    46999999999999999765311                  124544333222


Q ss_pred             eecCchhhHHHHhc------C---CcceeeEEEeccee---EE--eCCeEEEecCChhhhhccCCCChHhHHHHHHHHHH
Q 014768           80 IIANGALVRVLIHT------D---VTKYLYFKAVDGSF---VY--NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY  145 (419)
Q Consensus        80 ~~~~~~~~~~l~~~------~---~~~~~~~~~~~~~~---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (419)
                      -....-+.++|...      +   +++...+...++.+   ++  .+|.....         ..-.. ++.+....+.++
T Consensus        64 ~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------~~~~~-Ls~k~r~eL~kL  133 (500)
T PF06100_consen   64 EFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------DSKFG-LSEKDRMELIKL  133 (500)
T ss_pred             cchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------cCcCC-CCHHHHHHHHHH
Confidence            11111122222210      0   01111121112211   11  12221110         11111 233444445554


Q ss_pred             HhhcccCCCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEE
Q 014768          146 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI  225 (419)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  225 (419)
                      +..-.+         .+.+.++.|++....+...+..++   ..++.-..+  .++.+.-..+.+|+..+.....-++..
T Consensus       134 ~l~~E~---------~L~~~~I~d~F~~~FF~SnFW~~W---~T~FAFqpW--hSa~E~rRyl~Rf~h~~~~l~~l~~l~  199 (500)
T PF06100_consen  134 LLTPEE---------DLGDKRIEDWFSESFFESNFWYMW---STMFAFQPW--HSAVEFRRYLHRFIHEIPGLNDLSGLD  199 (500)
T ss_pred             hcCCHH---------HhCcccHHHhcchhhhcCchhHhH---HHhhccCcc--hhHHHHHHHHHHHHHhcCCCCCccccc
Confidence            332211         256778888877655555444333   333332222  233444334444444333321134445


Q ss_pred             EecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcC--C-CcEEEEEe--CCe--EE---EcCEEEeCC
Q 014768          226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDE--E-GKVVGVTS--EGE--TA---KCKKVVCDP  285 (419)
Q Consensus       226 ~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~--~-~~v~gV~~--~g~--~i---~ad~VV~~~  285 (419)
                      +.++- ..+++..|.+.++++||+|++|++|+.|+.+.  + ..++.+..  +|+  +|   .-|.|+++.
T Consensus       200 ~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~  270 (500)
T PF06100_consen  200 RTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTN  270 (500)
T ss_pred             cCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEEC
Confidence            55555 57899999999999999999999999999742  2 22344444  443  33   346777654

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.19  E-value=4.3e-11  Score=105.58  Aligned_cols=119  Identities=16%  Similarity=0.294  Sum_probs=77.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEE-ccCcceeec
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKFIIA   82 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~-d~gp~~~~~   82 (419)
                      .+|.+|||||++|+++|..|++.|++|+|+||++.+||.|-+..-+                  ..+..+ --|||+|..
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~------------------~tGIlvHkYGpHIFHT   62 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADD------------------QTGILVHKYGPHIFHT   62 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCC------------------CCCeEEeeccCceeec
Confidence            3799999999999999999999999999999999999999876421                  013333 458999987


Q ss_pred             Cch-hhHHHHhcCCcceeeEEEecc-eeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHH
Q 014768           83 NGA-LVRVLIHTDVTKYLYFKAVDG-SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYV  146 (419)
Q Consensus        83 ~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (419)
                      ... +.+-+     ..+.+|.+-.. ...+.+|..+.+|-+ ...+..-+-..+.+..+++|....
T Consensus        63 ~~~~Vwdyv-----~~F~e~~~Y~hrVla~~ng~~~~lP~n-l~ti~ql~G~~~~p~~a~~~i~~~  122 (374)
T COG0562          63 DNKRVWDYV-----NQFTEFNPYQHRVLALVNGQLYPLPFN-LNTINQLFGKNFTPDEARKFIEEQ  122 (374)
T ss_pred             CchHHHHHH-----hhhhhhhhhccceeEEECCeeeecccc-HHHHHHHhCccCCHHHHHHHHHHh
Confidence            653 22211     11122222111 123468888888865 555544332233555566665543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.19  E-value=2.5e-10  Score=116.95  Aligned_cols=65  Identities=20%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             CeEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          222 SPYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       222 ~~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.++|.+|   ...++++|.+.+++ |++++.+++|++|..+ ++++. |.+ +|..+.||.||.+++.+.
T Consensus       395 ~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        395 GGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             CcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCc
Confidence            456677777   35799999999988 9999999999999874 66654 666 566678999998887664

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.17  E-value=7.6e-10  Score=109.65  Aligned_cols=54  Identities=24%  Similarity=0.255  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CC--eEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EG--ETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g--~~i~ad~VV~~~~  286 (419)
                      ..+.+.|.+.+++.|++|+++++|++|.. +++++++|..   ++  .++.||.||++.+
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG  248 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTG  248 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence            35889999999999999999999999997 4888888876   32  3689999887554

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.17  E-value=1e-09  Score=105.57  Aligned_cols=65  Identities=28%  Similarity=0.290  Sum_probs=50.8

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      +++.|.+|   ...++++|++.+++.| ..+..+++|..++.+ + ++++|.+++.++.||+||++++.+.
T Consensus       144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~  212 (387)
T COG0665         144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWA  212 (387)
T ss_pred             eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHH
Confidence            34556565   3578999999999999 566679999999873 4 7788888555599999999887663

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.16  E-value=9.4e-10  Score=106.54  Aligned_cols=57  Identities=19%  Similarity=0.133  Sum_probs=46.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~  288 (419)
                      ..++.+|++.+.++|++++.+++|++|+..+++++.+|+++..++.|+.||++++.+
T Consensus       183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~  239 (407)
T TIGR01373       183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChh
Confidence            467888899999999999999999999763357778888854579999987766544

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.14  E-value=3.8e-10  Score=109.71  Aligned_cols=56  Identities=27%  Similarity=0.378  Sum_probs=45.8

Q ss_pred             CcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       230 G~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      +...+.+.|.+.++++|++|+++++|++|..+ +++|+||..    +|+  ++.|+.||.+++
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtG  200 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATG  200 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence            34678999999999999999999999999994 899999876    354  578999887553

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.14  E-value=5.6e-10  Score=99.20  Aligned_cols=58  Identities=19%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEc-CCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFD-EEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~-~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+-.++|...++++|+.|+-+..|+.+... +++..++|++ +|..+.|+.+|.+++.|.
T Consensus       153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI  212 (399)
T ss_pred             HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence            667888899999999999999999998843 4555667776 888899999999888773

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.14  E-value=6.4e-10  Score=107.96  Aligned_cols=54  Identities=19%  Similarity=0.252  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (419)
Q Consensus       234 l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~  288 (419)
                      +-+.|.+.+++.|++++++++|++|+. +++++++++.+|+++.||.||.+.+..
T Consensus       110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157        110 FDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVEADGDVIEAKTVILADGVN  163 (428)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence            334466677788999999999999988 478777777788899999998766553

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.14  E-value=2.7e-09  Score=106.55  Aligned_cols=41  Identities=27%  Similarity=0.485  Sum_probs=38.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||||||+| +|++||..++++|.+|+||||.+.+||.+.
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            47999999999 999999999999999999999999999776

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.14  E-value=2.6e-10  Score=112.90  Aligned_cols=44  Identities=32%  Similarity=0.483  Sum_probs=40.2

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |++.+||||||||++|+++|+.|+++|++|+|+||++..+|.++
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~   46 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS   46 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            66789999999999999999999999999999999988777654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.13  E-value=2.6e-10  Score=113.05  Aligned_cols=57  Identities=16%  Similarity=0.116  Sum_probs=45.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC----eEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG----ETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g----~~i~ad~VV~~~~~~~~  290 (419)
                      ..++..+++.++++|++++.+++|++|..+ ++ .++|++ ++    .++.|+.||.+++.|.+
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~  216 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWVT  216 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence            567888889999999999999999999873 55 345655 43    36999999999988754

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.13  E-value=8.1e-10  Score=105.39  Aligned_cols=61  Identities=20%  Similarity=0.034  Sum_probs=45.2

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ++++|.+|   ...++.+|.+.+.+. |++|+.+++|++|..  +    .|++++.++.||.||.+++.+.
T Consensus       133 ~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       133 GLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGDVHADQVFVCPGADF  197 (365)
T ss_pred             EEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCcEEeCEEEECCCCCh
Confidence            34455555   356788898887775 999999999999963  2    4666544689999998887653

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.11  E-value=1.9e-09  Score=105.46  Aligned_cols=55  Identities=25%  Similarity=0.234  Sum_probs=44.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g~--~i~ad~VV~~~~  286 (419)
                      ..+.+.|.+.+++.|++|+++++|++|+.++++++++|..   +++  .+.++.||.+++
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtG  189 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATG  189 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecC
Confidence            4688999999999999999999999999854678888765   333  478899887654

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07121 hypothetical protein; Validated

Probab=99.11  E-value=3.4e-09  Score=105.02  Aligned_cols=56  Identities=27%  Similarity=0.386  Sum_probs=45.8

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEc-CEEEeCCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPS  286 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~--~i~a-d~VV~~~~  286 (419)
                      ...+.+.|.+.+++.|++|+++++|++|..++++++++|..  +++  .+.| +.||.+++
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtG  236 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAG  236 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCC
Confidence            45689999999999999999999999999853578999876  333  5788 88887654

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.10  E-value=5.6e-10  Score=103.26  Aligned_cols=39  Identities=33%  Similarity=0.554  Sum_probs=32.9

Q ss_pred             ceEEEECCCchHHHHhhccccCC-CeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~GG~~   43 (419)
                      ||+||||||.+|+++|.+|+++| .+|+|||+.+......
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~   40 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED   40 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence            79999999999999999999998 7999999987765444

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK10015 oxidoreductase; Provisional

Probab=99.10  E-value=1.4e-09  Score=105.42  Aligned_cols=53  Identities=15%  Similarity=0.150  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (419)
Q Consensus       234 l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~  287 (419)
                      +-+.|.+.+++.|++++.+++|++|.. +++++.++.++++++.||.||.+.+.
T Consensus       110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~~~~i~A~~VI~AdG~  162 (429)
T PRK10015        110 LDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAGDDILEANVVILADGV  162 (429)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEeCCeEEECCEEEEccCc
Confidence            334466777788999999999999987 47788888877778999999987654

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.08  E-value=1.5e-09  Score=105.86  Aligned_cols=67  Identities=13%  Similarity=0.010  Sum_probs=48.9

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEE-E-e-CCe--EEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGV-T-S-EGE--TAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV-~-~-~g~--~i~ad~VV~~~~~~~  289 (419)
                      +.+.|.++   ...+.++|++.+.+ .|++++++++|++|..++++.++.. + + +++  +++||.||++++.+.
T Consensus       172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence            45566665   56789999999865 4899999999999987325444332 1 3 342  699999998888774

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.07  E-value=2.5e-09  Score=104.87  Aligned_cols=67  Identities=12%  Similarity=0.058  Sum_probs=50.3

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEE-E-e-CC--eEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-T-S-EG--ETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV-~-~-~g--~~i~ad~VV~~~~~~~  289 (419)
                      +.+.|.+|   ...++++|.+.+++.|++|+++++|++|..++++.+... . + +|  .+++||+||++++.+.
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            45667776   578999999999999999999999999987323333322 1 2 23  3699999999888774

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.07  E-value=1.3e-09  Score=110.16  Aligned_cols=60  Identities=23%  Similarity=0.243  Sum_probs=49.2

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe----CCe--EEEcCEEEeCCCCCCc
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS----EGE--TAKCKKVVCDPSYLPN  290 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~gV~~----~g~--~i~ad~VV~~~~~~~~  290 (419)
                      -..++.+|++.++++|++++.+++|++|..++ ++++++|+.    +++  ++.||.||.+++.|.+
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~  297 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD  297 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence            35789999999999999999999999998742 477877764    444  6899999999988753

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.07  E-value=1.5e-10  Score=99.81  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=53.5

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~   85 (419)
                      +++|||+||+||+||..|+.+|++|+|+||..-+|||..|...+                    +-.||.|.++|-..+.
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~--------------------~g~~DhGAqYfk~~~~   62 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLD--------------------GGRFDHGAQYFKPRDE   62 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccC--------------------CccccccceeecCCch
Confidence            69999999999999999999999999999999999999988643                    3448888888876654


Q ss_pred             h
Q 014768           86 L   86 (419)
Q Consensus        86 ~   86 (419)
                      +
T Consensus        63 ~   63 (331)
T COG3380          63 L   63 (331)
T ss_pred             H
Confidence            3

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.06  E-value=3.8e-09  Score=103.71  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=49.9

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEE--e-CCe--EEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EGE--TAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~--~-~g~--~i~ad~VV~~~~~~~  289 (419)
                      +.+.|.+|   ...++++|.+.+++.| ++|+++++|++|..++++.+....  + +|+  ++.|++||++++.+.
T Consensus       171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence            45667666   5689999999999987 799999999999974344343222  2 353  699999998887764

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.05  E-value=1e-09  Score=106.53  Aligned_cols=42  Identities=21%  Similarity=0.324  Sum_probs=37.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      |..++||||||+|.+||+||..++ +|.+|+|+||.+..||.+
T Consensus         1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s   42 (433)
T PRK06175          1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT   42 (433)
T ss_pred             CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence            666799999999999999999975 799999999999887753

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.05  E-value=1.1e-08  Score=103.03  Aligned_cols=56  Identities=18%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEc-CEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~--~i~a-d~VV~~~~~~  288 (419)
                      ..++++|.+.++++|++|+++++|++|+.+ ++++++|..  +++  ++.| +.||++++-+
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~  277 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGF  277 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence            568899999999999999999999999984 889988865  343  5788 8888776544

>PRK12839 hypothetical protein; Provisional

Probab=99.03  E-value=1.4e-08  Score=101.71  Aligned_cols=43  Identities=28%  Similarity=0.479  Sum_probs=40.1

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +.++||+|||+|.+|++||+.|+++|.+|+|+||++.+||.+.
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            3569999999999999999999999999999999999999875

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.01  E-value=1.4e-08  Score=102.22  Aligned_cols=42  Identities=24%  Similarity=0.409  Sum_probs=39.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||||||+|++||+||..++++|.+|+|+||.+..||.+.
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            358999999999999999999999999999999999998875

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.00  E-value=1.4e-08  Score=102.21  Aligned_cols=43  Identities=37%  Similarity=0.708  Sum_probs=39.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .++||+|||+|.+|++||..++++|.+|+||||++.+||.+..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~   57 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT   57 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence            4589999999999999999999999999999999999997753

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.98  E-value=1.8e-08  Score=100.94  Aligned_cols=42  Identities=31%  Similarity=0.500  Sum_probs=39.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||||||+|++|++||..|+++|.+|+||||++..||.+.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~   46 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA   46 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence            478999999999999999999999999999999999998754

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.98  E-value=1.2e-08  Score=101.33  Aligned_cols=41  Identities=32%  Similarity=0.503  Sum_probs=38.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||||||+| +||+||+.++++|.+|+||||.+..||.+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~   46 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA   46 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence            46899999999 999999999999999999999999888654

>TIGR00275 flavoprotein, HI0933 family

Probab=98.98  E-value=4e-09  Score=101.41  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             EecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768          226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (419)
Q Consensus       226 ~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~  287 (419)
                      +|... ...+.+.|.+.+++.|++++++++|++|..+ ++ ...|+++++++.||.||.+++.
T Consensus        98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~~~i~ad~VIlAtG~  158 (400)
T TIGR00275        98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSGGEYEADKVILATGG  158 (400)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECCcEEEcCEEEECCCC
Confidence            54432 4678999999999999999999999999763 44 4456667778999999987654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.97  E-value=3.8e-10  Score=94.37  Aligned_cols=42  Identities=33%  Similarity=0.453  Sum_probs=39.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      +.||+|||||++||+||++||++|.+|+|+||+-.+||-.+.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~   71 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG   71 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence            469999999999999999999999999999999999998873

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.96  E-value=2.6e-08  Score=100.21  Aligned_cols=42  Identities=29%  Similarity=0.501  Sum_probs=38.9

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      +.++||||||+|++||+||..++++|.+|+||||.+..||.+
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            457899999999999999999999999999999999988854

>PRK02106 choline dehydrogenase; Validated

Probab=98.96  E-value=1.7e-08  Score=101.58  Aligned_cols=38  Identities=32%  Similarity=0.563  Sum_probs=34.7

Q ss_pred             CCCcceEEEECCCchHHHHhhcccc-CCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~   38 (419)
                      |..+||+||||||.+|+++|.+|++ +|++|+|||+.+.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            4467999999999999999999999 8999999999864

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.94  E-value=1.1e-08  Score=98.47  Aligned_cols=56  Identities=11%  Similarity=0.039  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.|.+.+++.|++++++++|+++..+ ++.+. |++ +|+++.||.||.+.+...
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence            356777778888889999999999999874 66554 555 788899999997776654

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.94  E-value=3.6e-10  Score=95.22  Aligned_cols=42  Identities=33%  Similarity=0.434  Sum_probs=36.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ++||+|||||++||+||++|+++|++|+|+|++..+||..+.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~   58 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG   58 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            589999999999999999999999999999999999998874

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.92  E-value=1.4e-08  Score=102.77  Aligned_cols=54  Identities=17%  Similarity=0.286  Sum_probs=44.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~  285 (419)
                      ..|..+|.+.+++.|++|++++.|++++.+++|++.||..    +|+  .+.|+.||.++
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLAT  225 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIAT  225 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeC
Confidence            4688999999999999999999999998734789999864    453  67899988654

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.91  E-value=1.3e-08  Score=103.24  Aligned_cols=39  Identities=31%  Similarity=0.344  Sum_probs=36.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ++||+|||||++||+||..++++|.+|+|+||+..+|+.
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g   73 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA   73 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence            579999999999999999999999999999998887644

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.91  E-value=8.9e-09  Score=103.59  Aligned_cols=55  Identities=20%  Similarity=0.189  Sum_probs=44.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..|...|.+.+.+.|+++++++.|+++..+++|+|+||..    +|+  .+.|+.||.+++
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  203 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATG  203 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            4688999998888999999999999999844789999874    453  578999887553

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.90  E-value=6.9e-09  Score=101.15  Aligned_cols=61  Identities=11%  Similarity=0.064  Sum_probs=50.0

Q ss_pred             EecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe--CCeEEEcCEEEeCCC
Q 014768          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS--EGETAKCKKVVCDPS  286 (419)
Q Consensus       226 ~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~gV~~--~g~~i~ad~VV~~~~  286 (419)
                      ++.++...+.++|.+.++++|++|+++++|++|..++ ++++++|..  ++.++.|+.||.+++
T Consensus       117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG  180 (432)
T TIGR02485       117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG  180 (432)
T ss_pred             eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence            5556667899999999999999999999999998742 578888875  346899999887654

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.90  E-value=2.2e-08  Score=101.03  Aligned_cols=54  Identities=22%  Similarity=0.284  Sum_probs=44.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..+..+|.+.+++.|+++++++.|++|..+ +++++||..    +|+  .+.|+.||.+++
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG  188 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATG  188 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCC
Confidence            358888988888889999999999999984 889988764    453  589999887654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.88  E-value=1.3e-08  Score=102.07  Aligned_cols=54  Identities=19%  Similarity=0.065  Sum_probs=44.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~~  286 (419)
                      ..+.++|.+.+.+.|+++++++.++++..+ +|+|+||..    +|  ..+.|+.||.+++
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  195 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATG  195 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence            458889988888889999999999999984 899999875    23  2678999887553

>PRK06847 hypothetical protein; Provisional

Probab=98.88  E-value=1.7e-08  Score=96.73  Aligned_cols=55  Identities=24%  Similarity=0.279  Sum_probs=43.5

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.|.+.+++.|++|+++++|++|..+ ++.+ .|.+ +|+++.||.||.+.+..+
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        108 ALARILADAARAAGADVRLGTTVTAIEQD-DDGV-TVTFSDGTTGRYDLVVGADGLYS  163 (375)
T ss_pred             HHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEE-EEEEcCCCEEEcCEEEECcCCCc
Confidence            56677777788889999999999999873 5554 4444 888999999998877653

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=7.5e-09  Score=104.41  Aligned_cols=55  Identities=15%  Similarity=0.231  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..|..+|.+.+++.|++|++++.|++|..+++++|+||..    +|+  .+.|+.||.+++
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  209 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATG  209 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence            3589999998988999999999999999843478999864    443  688999887553

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=2.1e-08  Score=101.04  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=44.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..|...|.+.+.+.|++++.++.|++++.++++++.||..    +|+  .+.|+.||.+++
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  208 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATG  208 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence            4688999998888999999999999999743688999864    343  578999887553

>PRK07190 hypothetical protein; Provisional

Probab=98.85  E-value=3.7e-08  Score=97.00  Aligned_cols=39  Identities=26%  Similarity=0.347  Sum_probs=35.5

Q ss_pred             CCC-cceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         1 m~~-~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      |.. .+||+|||||++||++|+.|+++|.+|+|+||++.+
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            543 489999999999999999999999999999999875

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.84  E-value=3.3e-08  Score=100.07  Aligned_cols=54  Identities=9%  Similarity=0.199  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~  285 (419)
                      ..+.++|.+.+.+.|++|+.++.++++..++++++.||..    +|+  .+.|+.||.++
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILAT  246 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILAT  246 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECC
Confidence            4688999998888999999999999988743688999865    353  67899988755

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.84  E-value=1.4e-07  Score=94.69  Aligned_cols=42  Identities=29%  Similarity=0.587  Sum_probs=39.2

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||||||+|.+|++||..++++|.+|+||||.+.+||.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            468999999999999999999999999999999999998764

>PRK06185 hypothetical protein; Provisional

Probab=98.84  E-value=4.7e-08  Score=94.71  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=34.3

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..++||+|||||++|+++|..|+++|++|+|+|+++.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            3569999999999999999999999999999999864

>TIGR01810 betA choline dehydrogenase

Probab=98.83  E-value=1.1e-07  Score=95.23  Aligned_cols=56  Identities=16%  Similarity=0.167  Sum_probs=41.3

Q ss_pred             CcHHHHHHHHHH-HcCcEEEcCCccceEEEcCCCcEEEEEe--CCe---EEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE---TAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~-~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~---~i~ad~VV~~~~~~  288 (419)
                      .....++...+. +.|.+|++++.|++|..+ +++++||+.  +++   .+.++.||++++.+
T Consensus       193 ~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai  254 (532)
T TIGR01810       193 VSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAI  254 (532)
T ss_pred             EcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCC
Confidence            344555555554 557999999999999994 889999987  332   35788898877653

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.83  E-value=5.7e-08  Score=97.07  Aligned_cols=41  Identities=22%  Similarity=0.347  Sum_probs=37.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      .++||+|||+|++||+||..++++|.+|+|+||.+..||.+
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s   55 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGST   55 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCch
Confidence            46899999999999999999999999999999999877743

>TIGR00551 nadB L-aspartate oxidase

Probab=98.81  E-value=9.5e-08  Score=94.47  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-C-C--eEEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-E-G--ETAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV~~-~-g--~~i~ad~VV~~~~~  287 (419)
                      ..+.+.|.+.+++ .|++|++++.|++|..+ ++++.+|.. + +  ..+.|+.||.+++-
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG  187 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGG  187 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence            4688999998887 69999999999999984 788888876 2 3  46899998876643

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.81  E-value=5.1e-08  Score=98.19  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=44.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..+.++|.+.+++.|++|++++.|++|.. +++++.|+..    +|+  .+.|+.||.+++
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATG  194 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATG  194 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCC
Confidence            46889999989899999999999999998 4888888753    454  589999887654

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.76  E-value=4.4e-08  Score=94.78  Aligned_cols=55  Identities=16%  Similarity=0.123  Sum_probs=44.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+.+.|++++++++|++|..+ ++.+ .|++ +|+++.||.||.+.+..
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vI~AdG~~  166 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSDGSVLEARLLVAADGAR  166 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEEcCCCC
Confidence            468888888888889999999999999873 5554 3555 78889999999877654

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.76  E-value=1e-07  Score=94.56  Aligned_cols=53  Identities=17%  Similarity=0.216  Sum_probs=43.4

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~--~i~ad~VV~~~  285 (419)
                      ..+.++|.+.+++. |++|+.+++|++|.. ++++++||..  +++  .+.|+.||.++
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLAT  193 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLAT  193 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcC
Confidence            46899999888775 899999999999988 4888999876  343  68999988655

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=3.8e-08  Score=99.21  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=38.1

Q ss_pred             CC-CcceEEEECCCchHHHHhhccccCC---CeEEEeccCCCCCCcc
Q 014768            1 MD-EEYDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGES   43 (419)
Q Consensus         1 m~-~~~dvvIIGaGi~Gl~aA~~La~~G---~~V~vlE~~~~~GG~~   43 (419)
                      |+ .++||+|||||++||+||..++++|   .+|+|+||....||.+
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            44 3589999999999999999999998   8999999999877754

>PRK08275 putative oxidoreductase; Provisional

Probab=98.75  E-value=1e-07  Score=95.69  Aligned_cols=55  Identities=16%  Similarity=0.163  Sum_probs=44.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..+.+.|.+.+++.|++|++++.|++|..++++++.||..    +|+  .+.|+.||.+++
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG  197 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCG  197 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence            4688899998999999999999999999833678888863    454  588999886553

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.75  E-value=6.5e-09  Score=100.07  Aligned_cols=43  Identities=28%  Similarity=0.486  Sum_probs=40.3

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .+|||+|||||++|++||+.|+++|++|+|+||++.+|....+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            4799999999999999999999999999999999999987665

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.74  E-value=1.4e-07  Score=94.18  Aligned_cols=54  Identities=7%  Similarity=0.119  Sum_probs=42.7

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCCccceEEEcC-CCcEEEEEe--CCe--EEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDE-EGKVVGVTS--EGE--TAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~-~~~v~gV~~--~g~--~i~ad~VV~~~  285 (419)
                      ..+.++|.+.+++. |++|++++.|+++..++ +++++||..  +|+  .+.|+.||.++
T Consensus       134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILAT  193 (553)
T PRK07395        134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILAT  193 (553)
T ss_pred             HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcC
Confidence            46888998888754 99999999999999842 378999876  554  37899988655

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=9.5e-08  Score=95.72  Aligned_cols=54  Identities=17%  Similarity=0.135  Sum_probs=42.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCC-cEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG-KVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~-~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..+.+.|.+.+++.|++|++++.|+++..+ ++ +++||..    +|+  .+.|+.||.+++
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~-~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATG  194 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVD-ENREVIGAIFLDLRNGEIFPIYAKATILATG  194 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEe-CCcEEEEEEEEECCCCcEEEEEcCcEEECCC
Confidence            468888988888899999999999999985 55 4888753    443  589999887553

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=1.6e-07  Score=94.65  Aligned_cols=55  Identities=18%  Similarity=0.147  Sum_probs=44.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCC---CcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE---GKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~---~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..+.+.|.+.+++.|++|++++.|++|+.+++   +++.||..    +|+  .+.|+.||.+++
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  203 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATG  203 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCC
Confidence            46889999999999999999999999997422   78988864    454  578999887553

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.72  E-value=8.1e-09  Score=92.39  Aligned_cols=41  Identities=37%  Similarity=0.520  Sum_probs=38.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++||+||+.|+++|++|+|+||++.+||.++
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~   61 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW   61 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            58999999999999999999999999999999999998754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.72  E-value=2.1e-07  Score=94.54  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ++||||||||++||+||..++++|.+|+|+||++..||.
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~   46 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH   46 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            589999999999999999999999999999999876653

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.70  E-value=1.1e-08  Score=91.82  Aligned_cols=41  Identities=32%  Similarity=0.433  Sum_probs=38.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++||+||+.|+++|++|+|+||+..+||.++
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~   65 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW   65 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc
Confidence            58999999999999999999999999999999999998654

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.70  E-value=1.3e-07  Score=91.42  Aligned_cols=69  Identities=25%  Similarity=0.239  Sum_probs=58.9

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccc
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV  292 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~  292 (419)
                      +.+.|..|   ...++++|++.|++.|+.|..|++|++|.. +.++..+|++.-..|+|.+||.+++.|...+
T Consensus       175 ~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G~iet~~~VNaaGvWAr~V  246 (856)
T KOG2844|consen  175 GLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHGSIETECVVNAAGVWAREV  246 (856)
T ss_pred             eeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCcceecceEEechhHHHHHh
Confidence            45567777   457999999999999999999999999999 5787889999666799999999999986443

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.69  E-value=2.8e-07  Score=91.49  Aligned_cols=53  Identities=17%  Similarity=0.173  Sum_probs=42.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C--Ce--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E--GE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~--g~--~i~ad~VV~~~~  286 (419)
                      ..+.++|.+.++ .|++|+.++.|++|.. +++++.||.. +  |+  .+.|+.||++++
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATG  187 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASG  187 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecC
Confidence            358888888775 6999999999999998 4888998876 2  32  689999887653

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.69  E-value=6.1e-07  Score=88.21  Aligned_cols=55  Identities=16%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+++.|++++.+ .|+.+.. +++++++|..+++.+.|+.||.+++-+
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~~g~~i~a~~VVLATGG~  174 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFLDGELLKFDATVIATGGF  174 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEECCEEEEeCeEEECCCcC
Confidence            468999999999999999876 7999887 488899988888889999988766544

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.68  E-value=3.1e-07  Score=91.48  Aligned_cols=37  Identities=35%  Similarity=0.616  Sum_probs=34.1

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |..++|+||||+|.+|.++|.+|++.|++|+|||+..
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            4567999999999999999999999999999999963

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.67  E-value=1.9e-07  Score=101.15  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=39.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||||||+|.+|++||..++++|.+|+||||.+..||.+.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            358999999999999999999999999999999999999654

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.67  E-value=3.7e-07  Score=92.41  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=42.5

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..+...|.+.+++.| ++|++++.|++|..+ +++++||..    +++  .+.|+.||.+++
T Consensus       132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  192 (608)
T PRK06854        132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATG  192 (608)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCC
Confidence            457778888887776 999999999999884 788888742    443  689999887654

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.63  E-value=8.2e-07  Score=85.20  Aligned_cols=55  Identities=24%  Similarity=0.306  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--eEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g--~~i~ad~VV~~~~~~  288 (419)
                      ++.++|.+.+++.|++++++++|+++.. +++++..+.+ +|  ..++||.||++++-.
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~-~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEF-EGGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            7899999999999999999999999998 4777777655 44  358999988766543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.63  E-value=2.2e-08  Score=97.64  Aligned_cols=44  Identities=23%  Similarity=0.291  Sum_probs=40.8

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ....+|+|||||++||+||.+|.++|++|+|+||++.+||.+..
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            34589999999999999999999999999999999999999864

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.62  E-value=1.7e-07  Score=94.59  Aligned_cols=36  Identities=31%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             EEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      |||||+|++||+||..++++|.+|+|+||++.+||.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g   36 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA   36 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence            699999999999999999999999999999966543

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.61  E-value=2.8e-08  Score=97.77  Aligned_cols=44  Identities=25%  Similarity=0.302  Sum_probs=41.5

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |+.+|||+|||||.+|+.||..|++.|++|+|+|+++.+||.|.
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            77889999999999999999999999999999999989999763

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.60  E-value=2.9e-08  Score=97.71  Aligned_cols=44  Identities=23%  Similarity=0.306  Sum_probs=40.6

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      +.+|||+|||||++|+.||..|++.|++|+|+|+++.+||.|..
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence            34799999999999999999999999999999999999998753

>PRK06116 glutathione reductase; Validated

Probab=98.59  E-value=2.6e-08  Score=97.67  Aligned_cols=43  Identities=28%  Similarity=0.462  Sum_probs=39.8

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |+.+|||+|||||++|++||..|+++|++|+|+|++ .+||.|.
T Consensus         1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            777899999999999999999999999999999996 7899764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.59  E-value=1.1e-06  Score=88.36  Aligned_cols=53  Identities=21%  Similarity=0.179  Sum_probs=42.6

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~  285 (419)
                      ..|.++|.+.+.+. |++++.++.|++|+.+ ++++.||..    +|  ..+.|+.||.+.
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILAT  191 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLAT  191 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcC
Confidence            46888998877664 7899999999999984 889998763    45  468899988755

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06370 mercuric reductase; Validated

Probab=98.59  E-value=3.4e-08  Score=97.21  Aligned_cols=43  Identities=30%  Similarity=0.458  Sum_probs=38.8

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |+.+|||||||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            778899999999999999999999999999999996 5666654

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.57  E-value=7.9e-07  Score=83.62  Aligned_cols=61  Identities=18%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             EEecCC----cCcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe------CCeEEEcCEEEeCCC
Q 014768          225 IYPLYG----LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS------EGETAKCKKVVCDPS  286 (419)
Q Consensus       225 ~~p~gG----~~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~------~g~~i~ad~VV~~~~  286 (419)
                      .+...|    +++|++.|.+.+.+. |+++++|++|++|...++|. +.|++      +..+++|+.|++.++
T Consensus       170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAG  241 (488)
T PF06039_consen  170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAG  241 (488)
T ss_pred             eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCc
Confidence            355566    679999999999888 99999999999999854553 33332      346899999987664

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.56  E-value=3.5e-06  Score=79.99  Aligned_cols=56  Identities=16%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--eEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g--~~i~ad~VV~~~~~~  288 (419)
                      .++.++|.+.++++|++|+.+++|+++.. +++++++|.+ ++  ..+.||.||.+++.|
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCC
Confidence            57899999999999999999999999998 4888988886 54  489999999888776

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.56  E-value=3.8e-08  Score=96.79  Aligned_cols=43  Identities=26%  Similarity=0.324  Sum_probs=39.5

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |++|||+|||||++|++||..+++.|++|+|+|+++.+||.|-
T Consensus         1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115          1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence            2469999999999999999999999999999999889999873

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.56  E-value=2e-07  Score=87.36  Aligned_cols=52  Identities=23%  Similarity=0.259  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          234 LPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       234 l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                      +.+.+.+.++.+ +.++ ..++|++|.. ++++++||.+ +|+.+.||.||.+++.
T Consensus        97 y~~~~~~~l~~~~nl~i-~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   97 YSRAMREKLESHPNLTI-IQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHTSTTEEE-EES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHhcCCCeEE-EEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            344455566664 4565 5789999999 5999999999 9999999999877665

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.54  E-value=5.2e-08  Score=96.14  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=40.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      |...|||+|||||.+|+.||..|++.|++|+|+|+. .+||.|..
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            778899999999999999999999999999999996 78998843

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.53  E-value=5.9e-08  Score=95.58  Aligned_cols=44  Identities=32%  Similarity=0.518  Sum_probs=39.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      |+++|||+|||||++|++||.+|++.|++|+|+|++ .+||.|..
T Consensus         1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~   44 (466)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN   44 (466)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            677899999999999999999999999999999995 67777653

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.53  E-value=7.2e-08  Score=93.97  Aligned_cols=54  Identities=20%  Similarity=0.314  Sum_probs=41.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      ..+-+.|.+.+++.|++++.++ |.++..+++|.+++|++ +|++++||.||=+.+
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG  208 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASG  208 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SG
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCC
Confidence            3567778888999999998885 77777766888889998 899999999995443

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.51  E-value=6.4e-08  Score=94.58  Aligned_cols=42  Identities=33%  Similarity=0.511  Sum_probs=38.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC-CCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY-YGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~-~GG~~~   44 (419)
                      ++|||+|||||++|++||..|++.|++|+|+||++. +||.|-
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            479999999999999999999999999999999875 699764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.51  E-value=6.6e-08  Score=94.59  Aligned_cols=43  Identities=23%  Similarity=0.485  Sum_probs=39.0

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCC-CCCCccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGGESS   44 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~-~~GG~~~   44 (419)
                      |++|||||||||.+|++||.+|+++|++|+|+|+.+ .+||.|.
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~   44 (441)
T PRK08010          1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI   44 (441)
T ss_pred             CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence            257999999999999999999999999999999987 4799875

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.50  E-value=6.5e-08  Score=91.71  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=32.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      ++||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~   37 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence            4799999999999999999999999999999987753

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.50  E-value=8.8e-08  Score=92.21  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=35.2

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ++.+||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            45689999999999999999999999999999998765

>PRK09126 hypothetical protein; Provisional

Probab=98.49  E-value=8.3e-08  Score=92.53  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=35.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      |+ ++||+|||||++||++|..|+++|++|+|+||.+.+
T Consensus         1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   38 (392)
T PRK09126          1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA   38 (392)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence            55 689999999999999999999999999999998875

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.49  E-value=8.5e-08  Score=92.59  Aligned_cols=40  Identities=23%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      |++..||+|||||++||++|..|+++|++|+|+||.+.++
T Consensus         1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~   40 (396)
T PRK08163          1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG   40 (396)
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence            7778899999999999999999999999999999987653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.47  E-value=1e-07  Score=92.56  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=35.2

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ...+||+|||||++||++|..|+++|++|+|+||++..
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            34689999999999999999999999999999998865

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.47  E-value=1e-07  Score=95.56  Aligned_cols=44  Identities=34%  Similarity=0.562  Sum_probs=41.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC--CCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~--~~GG~~~   44 (419)
                      |..++||||||+|++||+||..++++|.+|+||||.+  .+||.+.
T Consensus         1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            6778999999999999999999999999999999999  7888664

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.47  E-value=9.4e-08  Score=92.82  Aligned_cols=40  Identities=30%  Similarity=0.498  Sum_probs=34.3

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ||||||||++|++||..+|++|.+|+|+|+.+.+||...+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence            8999999999999999999999999999999999998764

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.46  E-value=1e-07  Score=92.27  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=34.5

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ||..+||+|||||++||++|..|+++|++|+|+|+.
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            677899999999999999999999999999999996

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.46  E-value=1.4e-07  Score=91.61  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=42.4

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCe-EEEeccCCCCCCcccccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSSLN   47 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~~GG~~~t~~   47 (419)
                      ++++||+|||||++||++|++|.++|.. ++||||++.+||.++...
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r   52 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR   52 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc
Confidence            4578999999999999999999999988 999999999999987654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.46  E-value=1e-07  Score=93.24  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=37.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++|||+|||||++|+.||..|++.|++|+|+||. .+||.|.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            4699999999999999999999999999999995 6899764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.46  E-value=1.3e-07  Score=93.26  Aligned_cols=45  Identities=27%  Similarity=0.440  Sum_probs=41.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEecc------CCCCCCcccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR------NDYYGGESSS   45 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~------~~~~GG~~~t   45 (419)
                      |+++||++|||||++|++||.+|++.|.+|+|+|+      ...+||.|..
T Consensus         1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n   51 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN   51 (475)
T ss_pred             CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence            77789999999999999999999999999999998      4678898754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.45  E-value=1.3e-07  Score=87.39  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=35.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      |||+|||||++||++|+.|++.|.+|+|+||++.++.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            6999999999999999999999999999999988765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08013 oxidoreductase; Provisional

Probab=98.45  E-value=1.3e-07  Score=91.27  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=35.1

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      |+ ++||+|||||++|+++|+.|+++|++|+|+|+++.+
T Consensus         1 m~-~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013          1 MQ-SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             CC-cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            44 689999999999999999999999999999998864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.44  E-value=1.2e-07  Score=95.09  Aligned_cols=44  Identities=25%  Similarity=0.451  Sum_probs=40.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      |...|||+|||||++||+||..|+++|++|+|+|++ .+||.+..
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            777799999999999999999999999999999995 68887653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02661 Putative thiazole synthesis

Probab=98.44  E-value=1.2e-07  Score=87.49  Aligned_cols=41  Identities=24%  Similarity=0.318  Sum_probs=37.5

Q ss_pred             cceEEEECCCchHHHHhhccccC-CCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++|++||+.|+++ |++|+|+||+..+||..+
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~  133 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW  133 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence            58999999999999999999976 899999999999988554

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.44  E-value=1.2e-07  Score=92.89  Aligned_cols=40  Identities=28%  Similarity=0.436  Sum_probs=37.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +|||+|||||++|++||..+++.|++|+|+|+ +.+||.|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~   41 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV   41 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence            68999999999999999999999999999999 57999875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.44  E-value=1.3e-07  Score=90.92  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=35.9

Q ss_pred             CC-CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         1 m~-~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      |+ ..+||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            44 6789999999999999999999999999999998865

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.43  E-value=1.5e-07  Score=92.71  Aligned_cols=41  Identities=32%  Similarity=0.478  Sum_probs=38.2

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++|||||||||++|++||.+|++.|++|+|+|+ +.+||.|.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            469999999999999999999999999999999 78899774

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.42  E-value=1.3e-07  Score=88.36  Aligned_cols=43  Identities=28%  Similarity=0.410  Sum_probs=40.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN   47 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   47 (419)
                      .+++|||||++|++||..||+.|++|.++||++.+||++..++
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            4799999999999999999999999999999999999987664

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.42  E-value=1.6e-07  Score=92.58  Aligned_cols=41  Identities=32%  Similarity=0.545  Sum_probs=38.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .|||+|||||++|+.||..|++.|++|+|+|+ +.+||.|..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            38999999999999999999999999999999 889998754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.42  E-value=1.6e-07  Score=92.57  Aligned_cols=42  Identities=33%  Similarity=0.476  Sum_probs=38.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .+|||||||||++|++||..|++.|++|+|+|++. +||.|..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            57999999999999999999999999999999987 9997743

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.40  E-value=1.7e-07  Score=89.95  Aligned_cols=36  Identities=22%  Similarity=0.419  Sum_probs=33.5

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |+ .+||+|||||++||++|..|+++|++|+|+|+.+
T Consensus         1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            54 5899999999999999999999999999999875

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.39  E-value=1.8e-07  Score=89.71  Aligned_cols=44  Identities=27%  Similarity=0.305  Sum_probs=41.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~   46 (419)
                      ...+|+|||||.+||++|..|.++|++|+|+||.+.+||.+...
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            35799999999999999999999999999999999999998754

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.39  E-value=2.2e-07  Score=91.80  Aligned_cols=42  Identities=40%  Similarity=0.529  Sum_probs=37.8

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccC-CCCCCc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGE   42 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~-~~~GG~   42 (419)
                      |+.+|||||||||++|+.||+.+|+.|.+|+++|++ +.+|+.
T Consensus         1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            566799999999999999999999999999999998 467653

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.38  E-value=2.4e-07  Score=89.29  Aligned_cols=45  Identities=31%  Similarity=0.491  Sum_probs=42.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      |+.+||+||||+|.+|.+||.++++.|.+|.++|+...+||.|-.
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln   45 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN   45 (454)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence            677899999999999999999999999999999999999998753

>PRK14694 putative mercuric reductase; Provisional

Probab=98.37  E-value=2.5e-07  Score=91.14  Aligned_cols=57  Identities=11%  Similarity=0.170  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|+++++++.|++|..+ ++. ..+.++++++.+|.||.+++..|.
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~~i~~D~vi~a~G~~pn  274 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAGTLRAEQLLVATGRTPN  274 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCCEEEeCEEEEccCCCCC
Confidence            357888888999999999999999999863 443 345555667999999988766553

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.37  E-value=2.6e-07  Score=88.94  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=34.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      +||+|||||++|++||..|+++|++|+|+||++..+..|
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c   39 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC   39 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc
Confidence            589999999999999999999999999999987655444

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN02785 Protein HOTHEAD

Probab=98.36  E-value=6.3e-06  Score=82.83  Aligned_cols=35  Identities=37%  Similarity=0.628  Sum_probs=32.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..||+||||||.+|+++|.+|++ +++|+|||+.+.
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            35999999999999999999999 699999999764

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.36  E-value=2.6e-07  Score=89.49  Aligned_cols=54  Identities=11%  Similarity=-0.038  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .+.++|.+.+++.|++++.+++|++|+.+ ++.+ .|++ +|++++||.||.+.+.+
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~g~~~~a~~vVgAdG~~  167 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRS-GDDW-LLTLADGRQLRAPLVVAADGAN  167 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecCCC
Confidence            56677778778889999999999999874 5554 3555 78889999999777654

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.36  E-value=2.6e-07  Score=88.85  Aligned_cols=55  Identities=16%  Similarity=0.108  Sum_probs=43.1

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+.+.| ++++.+++|++|..+ ++.+ .|++ +|+++.||.||.+.+..
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~adG~~  162 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGADGAN  162 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEeCCCC
Confidence            357777888888888 999999999999874 6655 4555 88889999998766543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.36  E-value=1.8e-07  Score=81.27  Aligned_cols=38  Identities=26%  Similarity=0.437  Sum_probs=32.4

Q ss_pred             EEECCCchHHHHhhccccCCCe-EEEeccCCCCCCcccc
Q 014768            8 IVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSS   45 (419)
Q Consensus         8 vIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~~GG~~~t   45 (419)
                      +|||||++||++|+.|.++|.+ |+|||+++.+||.+..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            7999999999999999999999 9999999999999874

...

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.36  E-value=6.9e-06  Score=76.76  Aligned_cols=57  Identities=25%  Similarity=0.368  Sum_probs=50.5

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .-.+++.+.+.++++|++|+++|+|..|+. +++.+.+|.+ +|+++.||+||.+++--
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs  229 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS  229 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence            457889999999999999999999999999 5887888888 88899999999988653

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.35  E-value=2.6e-07  Score=89.98  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=33.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+||+|||||++|++||..|+++|++|+|+||++.
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            358999999999999999999999999999999753

>PRK07236 hypothetical protein; Provisional

Probab=98.35  E-value=2.9e-07  Score=88.46  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=33.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +..||+|||||++||++|..|+++|++|+|+||++.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            357999999999999999999999999999999864

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.34  E-value=3e-07  Score=96.21  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ..||+|||||++||+||+.|++.|++|+|+|+++.+||.++.
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            469999999999999999999999999999999999999863

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=98.34  E-value=3.8e-06  Score=76.23  Aligned_cols=221  Identities=12%  Similarity=0.158  Sum_probs=107.9

Q ss_pred             ceEEEECCCchHHHHhhccccC----CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccC---c
Q 014768            5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMI---P   77 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~g---p   77 (419)
                      ..+-|||+|++||++|..|-|.    |.++.++|--+..||..-.....  +.||..-|+..-+-.  -...+|+.   |
T Consensus        23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p--~~GfV~RGGRemEnh--fEc~WDlfrsIP   98 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSP--HHGFVVRGGREMENH--FECLWDLFRSIP   98 (587)
T ss_pred             ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCc--ccceeecCcHHHHHH--HHHHHHHHhcCc
Confidence            4588999999999999999775    57999999999999988655322  111211110000000  00001111   1


Q ss_pred             ceeecCchhhHHHHhcCCcceeeEEEecce---eE--EeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccC
Q 014768           78 KFIIANGALVRVLIHTDVTKYLYFKAVDGS---FV--YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN  152 (419)
Q Consensus        78 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (419)
                      ++=...-.+.+.+.+        +...+|.   ++  -.+|..+..    ...|     . +.+...+...+++..-.+ 
T Consensus        99 SLei~naSvldEfy~--------~d~~dPn~s~cRli~k~g~rv~d----dg~~-----t-l~~~~~~ei~kL~~t~EE-  159 (587)
T COG4716          99 SLEIPNASVLDEFYW--------LDKDDPNSSNCRLIHKRGRRVDD----DGSF-----T-LNNKARKEIIKLLMTPEE-  159 (587)
T ss_pred             cccCCCcHHHHHHHh--------ccCCCCCccceeeeecccccccc----cccc-----c-cChhhHHHHHHHHcCcHH-
Confidence            111111111121111        1112221   11  122222111    0111     1 133333444444433221 


Q ss_pred             CCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCC-c
Q 014768          153 DPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG-L  231 (419)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG-~  231 (419)
                              .+.+.++.+|+....+...+.   -++..++.-..+  .++.++-..+.+++..+.....-++.-+.++. .
T Consensus       160 --------~L~~~tI~d~Fse~FF~sNFW---~yW~tmFAFekW--hSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQY  226 (587)
T COG4716         160 --------KLDDLTIEDWFSEDFFKSNFW---YYWQTMFAFEKW--HSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQY  226 (587)
T ss_pred             --------hcCCccHHHhhhHhhhhhhHH---HHHHHHHhhhHH--HHHHHHHHHHHHHHHHhcCCCcchhhcccccchH
Confidence                    256788888887654544333   223333322222  12223222233333222211011222233443 5


Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFD  261 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~  261 (419)
                      .+++..|...++++|++|-+++.|+.|.++
T Consensus       227 eSlvlPli~yL~~H~Vdf~~~~~Vedi~v~  256 (587)
T COG4716         227 ESLVLPLITYLKSHGVDFTYDQKVEDIDVD  256 (587)
T ss_pred             HHHHHHHHHHHHHcCCceEeccEEeeeeec
Confidence            789999999999999999999999999985

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.34  E-value=2.9e-07  Score=85.26  Aligned_cols=40  Identities=28%  Similarity=0.449  Sum_probs=36.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      |||+|||||++||+||..|++.|++|+|+|+++ +||.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~   40 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT   40 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence            699999999999999999999999999999987 7876653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.34  E-value=3.2e-07  Score=88.34  Aligned_cols=38  Identities=29%  Similarity=0.392  Sum_probs=35.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      ..+||+|||||++||++|+.|++.|++|+|+||++.+.
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   41 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR   41 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence            36899999999999999999999999999999988753

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.34  E-value=2.9e-07  Score=88.49  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=31.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      |||+|||||++|++||..|+++|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            69999999999999999999999999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.34  E-value=3.3e-07  Score=90.75  Aligned_cols=56  Identities=14%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      .+.+.+.+.+++.|+++++++.|++|... ++.+ .+.+ +|+++.+|.||.+.+..|+
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDKI-KVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCeE-EEEECCCCEEEcCEEEEeeCCCCC
Confidence            46778888889999999999999999863 4443 3444 7888999999988776653

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.33  E-value=3.3e-07  Score=96.55  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=39.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||||++||+||..|+++|++|+|+|+++.+||..+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            47899999999999999999999999999999999999876

>PRK06184 hypothetical protein; Provisional

Probab=98.33  E-value=3.5e-07  Score=90.99  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=34.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      +++||+|||||++||++|..|++.|++|+|+||++.+
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998765

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.31  E-value=9.8e-07  Score=80.25  Aligned_cols=35  Identities=31%  Similarity=0.481  Sum_probs=32.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...||||||||++|.+.|+.|++.|.+|+|+||.-
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            45899999999999999999999999999999953

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=4e-07  Score=83.39  Aligned_cols=45  Identities=27%  Similarity=0.358  Sum_probs=37.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN   47 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   47 (419)
                      +.+||+|||||++||+||.+++++|.+++|++....+||......
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            579999999999999999999999999556666677787766543

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.31  E-value=3.7e-07  Score=87.81  Aligned_cols=35  Identities=23%  Similarity=0.448  Sum_probs=33.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+||+|||||++||++|..|+++|++|+|+||.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            47999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.31  E-value=4.2e-07  Score=87.62  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=33.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +++||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            458999999999999999999999999999999763

>TIGR02053 MerA mercuric reductase

Probab=98.31  E-value=4e-07  Score=89.68  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=35.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |||||||||++|++||..|++.|++|+|+||.+ +||.|-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            699999999999999999999999999999976 777753

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13748 putative mercuric reductase; Provisional

Probab=98.30  E-value=4.1e-07  Score=91.95  Aligned_cols=57  Identities=14%  Similarity=0.169  Sum_probs=44.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++.+ .+.++++++.+|.||.+++..|+
T Consensus       310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~~i~~D~vi~a~G~~pn  366 (561)
T PRK13748        310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHGELRADKLLVATGRAPN  366 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCCeEEeCEEEEccCCCcC
Confidence            357778888889999999999999999863 5543 35555557999999988877654

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.30  E-value=4.8e-07  Score=87.12  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=34.6

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ||||||||++|+++|+.|+++|++|+|+|+++..||.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999999877754

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.29  E-value=5e-07  Score=88.58  Aligned_cols=42  Identities=24%  Similarity=0.238  Sum_probs=39.3

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ...||+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            347999999999999999999999999999999999999875

>PRK09897 hypothetical protein; Provisional

Probab=98.28  E-value=6.1e-06  Score=81.54  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=34.0

Q ss_pred             ceEEEECCCchHHHHhhccccCC--CeEEEeccCCCCC-Ccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYG-GES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~G-G~~   43 (419)
                      .+|+|||||.+|+++|..|.+.+  .+|+|+|++..+| |..
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~a   43 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMP   43 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCccee
Confidence            38999999999999999998765  5899999999888 443

>PTZ00058 glutathione reductase; Provisional

Probab=98.28  E-value=5.3e-07  Score=89.86  Aligned_cols=41  Identities=27%  Similarity=0.442  Sum_probs=37.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+|||||||||.+|.+||..+++.|.+|+|+|++ .+||.|-
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl   87 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV   87 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence            3689999999999999999999999999999996 7899764

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.27  E-value=5.2e-07  Score=87.07  Aligned_cols=35  Identities=31%  Similarity=0.403  Sum_probs=32.7

Q ss_pred             CcceEEEECCCchHHHHhhccccC---CCeEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVD---GLKVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~---G~~V~vlE~~~   37 (419)
                      +.+||+|||||++|+++|+.|+++   |++|+|+||..
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~   39 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA   39 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence            568999999999999999999998   99999999963

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.26  E-value=5.9e-07  Score=86.28  Aligned_cols=55  Identities=16%  Similarity=0.082  Sum_probs=42.9

Q ss_pred             CcHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+.+ .|++++++++|++|..+ ++.++ |++ +|+++.||.||.+.+..
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~g~~~~ad~vV~AdG~~  161 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVR-VTLDNGQQLRAKLLIAADGAN  161 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEE-EEECCCCEEEeeEEEEecCCC
Confidence            4577788888877 49999999999999874 55543 555 78889999999777654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06753 hypothetical protein; Provisional

Probab=98.26  E-value=5.6e-07  Score=86.12  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=33.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      ||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~   36 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK   36 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            89999999999999999999999999999998763

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.26  E-value=1.6e-05  Score=70.85  Aligned_cols=40  Identities=28%  Similarity=0.374  Sum_probs=37.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .|||||+|++||+|+-.+-..|-.|+++|++...||..-.
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK   50 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK   50 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence            5999999999999999999998889999999999998753

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.26  E-value=6.3e-07  Score=90.44  Aligned_cols=41  Identities=22%  Similarity=0.164  Sum_probs=37.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      +.+||||||+|++||+||..++++|.+|+|+||.+..||.+
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s   42 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS   42 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence            46799999999999999999999999999999999877643

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.23  E-value=6.7e-07  Score=85.94  Aligned_cols=56  Identities=21%  Similarity=0.121  Sum_probs=44.1

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+-+.|.+.+.+.+ ++++.+++|+.+..+ ++.+..... +|++++||.||.+-+..
T Consensus       104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~dG~~~~a~llVgADG~~  161 (387)
T COG0654         104 SDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSFDGETLDADLLVGADGAN  161 (387)
T ss_pred             HHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcCCCcEEecCEEEECCCCc
Confidence            457777778887776 899999999999984 677764434 78999999999776554

>PLN02985 squalene monooxygenase

Probab=98.23  E-value=9.5e-07  Score=87.51  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=33.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+||+|||||++|+++|..|+++|++|+|+||.+.
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            358999999999999999999999999999999754

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.23  E-value=9.1e-07  Score=81.66  Aligned_cols=41  Identities=22%  Similarity=0.372  Sum_probs=35.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +-+||||||||+||++|..|+++|++|+|+|+...+=|.-.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~   42 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGT   42 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCc
Confidence            35899999999999999999999999999999877655433

>PRK14727 putative mercuric reductase; Provisional

Probab=98.22  E-value=7.4e-07  Score=88.03  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=40.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .++|++|||||.+|+++|..|++.|.+|+++|+++.+||.|..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            3589999999999999999999999999999999899998853

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.21  E-value=8.2e-07  Score=84.96  Aligned_cols=55  Identities=9%  Similarity=-0.009  Sum_probs=40.0

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~  288 (419)
                      ..+-+.|.+.+++.+ ++++++++|++|..+ ++.+ .|.+++++++||.||.+-+..
T Consensus       104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~~~~~adlvIgADG~~  159 (374)
T PRK06617        104 SDFKKILLSKITNNPLITLIDNNQYQEVISH-NDYS-IIKFDDKQIKCNLLIICDGAN  159 (374)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCeE-EEEEcCCEEeeCEEEEeCCCC
Confidence            456677777777765 889999999999874 5554 356644589999999765543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.21  E-value=8.9e-07  Score=86.51  Aligned_cols=34  Identities=35%  Similarity=0.531  Sum_probs=31.8

Q ss_pred             ceEEEECCCchHHHHhhcccc----CCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSV----DGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~----~G~~V~vlE~~~~   38 (419)
                      |||+|||||++|+++|+.|++    +|++|+|+|+++.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            699999999999999999999    8999999999654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06834 hypothetical protein; Provisional

Probab=98.21  E-value=9e-07  Score=87.35  Aligned_cols=54  Identities=15%  Similarity=0.119  Sum_probs=40.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .+-+.|.+.+++.|++|+.+++|++|..+ ++.+ .|++ +|++++||.||.+.+..
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v-~v~~~~g~~i~a~~vVgADG~~  155 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQD-DTGV-DVELSDGRTLRAQYLVGCDGGR  155 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecCCC
Confidence            45566777778889999999999999984 5554 3455 67789999998766543

>PRK07538 hypothetical protein; Provisional

Probab=98.21  E-value=8.6e-07  Score=86.03  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=32.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            38999999999999999999999999999998754

>PRK08244 hypothetical protein; Provisional

Probab=98.21  E-value=8.7e-07  Score=88.04  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=33.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ++||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            489999999999999999999999999999998754

>PRK06126 hypothetical protein; Provisional

Probab=98.20  E-value=9.4e-07  Score=88.95  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .++||+|||||++||++|..|+++|++|+|+||++.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            358999999999999999999999999999999864

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.20  E-value=8.8e-07  Score=85.34  Aligned_cols=35  Identities=23%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++||+|||||++||++|..|+++|++|+|+||++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            57999999999999999999999999999999874

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.20  E-value=9.4e-07  Score=92.17  Aligned_cols=42  Identities=24%  Similarity=0.325  Sum_probs=39.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ..+|+|||||++||+||..|+++|++|+|+|+++.+||.++.
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            468999999999999999999999999999999999998763

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.20  E-value=1.2e-06  Score=78.28  Aligned_cols=41  Identities=34%  Similarity=0.545  Sum_probs=36.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC--CCCCcc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGES   43 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~--~~GG~~   43 (419)
                      .+.||||||+|++||+||+.||.+|++|+|+|+..  .+||.+
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            36899999999999999999999999999999865  466655

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.19  E-value=9.7e-07  Score=87.42  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .+|+|||||++||++|..|.+.|++|+++||++.+||.++.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            37999999999999999999999999999999999999873

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02507 glutathione reductase

Probab=98.19  E-value=1.1e-06  Score=87.11  Aligned_cols=57  Identities=21%  Similarity=0.188  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|+++++++.|++|..+ ++++ .+.+ +|+++.+|.||.+.+..|+
T Consensus       244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDHGEEFVADVVLFATGRAPN  301 (499)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECCCcEEEcCEEEEeecCCCC
Confidence            346677777888999999999999999863 4444 3444 7788999999988776553

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.18  E-value=8.8e-06  Score=67.38  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=29.9

Q ss_pred             EEECCCchHHHHhhccccC-----CCeEEEeccCCCCC-Cccc
Q 014768            8 IVLGTGLKECILSGLLSVD-----GLKVLHMDRNDYYG-GESS   44 (419)
Q Consensus         8 vIIGaGi~Gl~aA~~La~~-----G~~V~vlE~~~~~G-G~~~   44 (419)
                      +|||+|++|++++..|.+.     ..+|+|+|+++. | |...
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~   42 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAY   42 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccC
Confidence            5999999999999999876     479999999666 5 4443

>PLN02463 lycopene beta cyclase

Probab=98.18  E-value=1.1e-06  Score=85.31  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=32.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            58999999999999999999999999999999753

>PRK07588 hypothetical protein; Provisional

Probab=98.18  E-value=1e-06  Score=84.88  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ||+|||||++||++|..|+++|++|+|+||.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            8999999999999999999999999999998643

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.17  E-value=1.2e-06  Score=86.19  Aligned_cols=58  Identities=21%  Similarity=0.234  Sum_probs=45.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|+++++++.|++|..+ ++....|.+ +|+++.+|.||.+.+..|+
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence            457788888999999999999999999863 343344555 7788999999987766553

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.17  E-value=9.1e-07  Score=83.80  Aligned_cols=60  Identities=23%  Similarity=0.320  Sum_probs=46.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCeE--EEcCEEEeCCCCCCccc
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGET--AKCKKVVCDPSYLPNKV  292 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~~--i~ad~VV~~~~~~~~~~  292 (419)
                      ++.-+++=.|.++|+.+.-..+|.++..++++++.|++.    .|++  |+|+.||.++++..+.+
T Consensus       225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsI  290 (680)
T KOG0042|consen  225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSI  290 (680)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHH
Confidence            567777778889999999999999999876788888765    4654  67778888887765543

>PTZ00367 squalene epoxidase; Provisional

Probab=98.17  E-value=1.2e-06  Score=87.41  Aligned_cols=35  Identities=37%  Similarity=0.597  Sum_probs=32.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .++||||||||++|+++|..|+++|++|+|+||+.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            35899999999999999999999999999999975

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.16  E-value=1.4e-06  Score=87.73  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=34.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ..+||+|||||++||++|..|++.|++|+|+||++.+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4579999999999999999999999999999999865

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.16  E-value=1.4e-06  Score=88.68  Aligned_cols=44  Identities=23%  Similarity=0.359  Sum_probs=37.2

Q ss_pred             CCCcceEEEECCCchHHHHhhcccc-CCCeEEEeccCCCC--CCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYY--GGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~~--GG~~~   44 (419)
                      |.+++||+|||||++||++|+.|++ .|.+|+|+||.+.+  .|++-
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~   75 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD   75 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee
Confidence            4567899999999999999999999 59999999998643  34443

>PRK11445 putative oxidoreductase; Provisional

Probab=98.16  E-value=1.3e-06  Score=82.76  Aligned_cols=34  Identities=32%  Similarity=0.583  Sum_probs=32.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      +||+|||||++|+++|..|+++ ++|+|+|+++.+
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            7999999999999999999999 999999998864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.16  E-value=1.4e-06  Score=89.35  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=38.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            46899999999999999999999999999999999999865

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.16  E-value=1.3e-06  Score=92.97  Aligned_cols=41  Identities=20%  Similarity=0.142  Sum_probs=38.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||||++||+||..|+++|++|+|+|+.+.+||..+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            46899999999999999999999999999999999999875

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.15  E-value=1.5e-06  Score=85.12  Aligned_cols=42  Identities=21%  Similarity=0.227  Sum_probs=39.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +.+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            357999999999999999999999999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.15  E-value=1.4e-06  Score=84.93  Aligned_cols=42  Identities=26%  Similarity=0.207  Sum_probs=38.8

Q ss_pred             cceEEEECCCchHHHHhhcccc--CCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ..+|+|||||++|+.||..|++  .|++|+|+|+.+.+||..+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            3689999999999999999987  79999999999999998874

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.15  E-value=1.5e-06  Score=82.73  Aligned_cols=37  Identities=22%  Similarity=0.437  Sum_probs=34.5

Q ss_pred             eEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCc
Q 014768            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE   42 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~   42 (419)
                      ||+|||||++||++|+.|+++  |++|+|+|+.+..||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999987  9999999999887764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.14  E-value=1.7e-06  Score=86.89  Aligned_cols=39  Identities=28%  Similarity=0.432  Sum_probs=35.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .++||+|||||++||++|..|++.|++|+|+||++.++.
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~   47 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD   47 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            368999999999999999999999999999999987643

>PLN02546 glutathione reductase

Probab=98.14  E-value=1.6e-06  Score=86.54  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=36.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC---------CCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN---------DYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~---------~~~GG~~~   44 (419)
                      +|||+|||+|.+|..||..+++.|++|+|+|++         ..+||.|-
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~  128 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCV  128 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCccc
Confidence            589999999999999999999999999999972         56788764

>PRK05868 hypothetical protein; Validated

Probab=98.13  E-value=1.6e-06  Score=82.74  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=32.5

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ||+|||||++||++|..|+++|++|+|+||.+.+
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            8999999999999999999999999999998765

>PRK10262 thioredoxin reductase; Provisional

Probab=98.13  E-value=1.6e-06  Score=81.23  Aligned_cols=42  Identities=14%  Similarity=0.244  Sum_probs=37.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      +.+||+|||||++||+||..|+++|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            5689999999999999999999999999999965 67887654

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.12  E-value=1.6e-06  Score=87.27  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=33.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +..+|+|||||++||++|..|+++|++|+|+||.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45899999999999999999999999999999975

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.12  E-value=1.7e-06  Score=92.46  Aligned_cols=43  Identities=26%  Similarity=0.323  Sum_probs=40.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .++||+|||||++||+||..|+++|++|+|+|+++.+||....
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            3589999999999999999999999999999999999998763

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02815 L-aspartate oxidase

Probab=98.12  E-value=1.8e-06  Score=86.82  Aligned_cols=39  Identities=15%  Similarity=0.294  Sum_probs=36.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      ++||||||+|++||+||..++++| +|+|+||.+..||.+
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s   67 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT   67 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence            589999999999999999999999 999999999988754

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.11  E-value=2.1e-06  Score=89.47  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=38.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..||+|||||++||+||..|++.|++|+|+|+++.+||..+
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            46999999999999999999999999999999999999875

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.11  E-value=1.9e-06  Score=83.33  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=32.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      -+|+|||||++||++|..|+++|++|+|+||.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            47999999999999999999999999999998754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.11  E-value=2e-06  Score=87.73  Aligned_cols=55  Identities=15%  Similarity=0.062  Sum_probs=44.1

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ...+..+|.+.+.+.|++|+.+++|++|+.+ ++++.||..    +|+  .+.|+.||.+++
T Consensus       157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG  217 (657)
T PRK08626        157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATG  217 (657)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            3467888888888999999999999999984 889888764    453  467999886553

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.10  E-value=2.1e-06  Score=81.37  Aligned_cols=37  Identities=22%  Similarity=0.154  Sum_probs=33.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .||+|||||++|+.||+.|+++|++|+|+|+.+...-
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s   39 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT   39 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence            4899999999999999999999999999998876543

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.10  E-value=3.4e-05  Score=74.07  Aligned_cols=65  Identities=18%  Similarity=0.149  Sum_probs=52.4

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      +.++|.+|   ...++++|.+.+++ |++|+.+++|++|+.+ +++ +.|++ +|+.+.||.||.+++.+..
T Consensus       123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence            45577776   46899999999998 9999999999999983 665 45666 6667999999988887743

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.09  E-value=2.4e-06  Score=84.19  Aligned_cols=41  Identities=29%  Similarity=0.347  Sum_probs=38.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            47999999999999999999999999999999999999764

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.08  E-value=2.4e-06  Score=83.03  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             eEEEECCCchHHHHhhccccCC-CeEEEeccCCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYG   40 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~G   40 (419)
                      +|+|||||++||++|..|+++| .+|+|+||.+.++
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            7999999999999999999998 5999999987654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.07  E-value=2.5e-06  Score=86.43  Aligned_cols=41  Identities=32%  Similarity=0.439  Sum_probs=37.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC-CCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~-~~~GG~~~   44 (419)
                      +|||||||+|.+|..||..+++.|.+|+|+|+. +.+||.|-
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv  157 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV  157 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence            689999999999999999999999999999984 47899764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.06  E-value=2.6e-06  Score=84.94  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=36.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+||+|||||++||+||.+|++.|++|+|+|+.  +||.+.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~  249 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL  249 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence            589999999999999999999999999999864  899875

>PLN02697 lycopene epsilon cyclase

Probab=98.05  E-value=3.4e-06  Score=83.29  Aligned_cols=55  Identities=15%  Similarity=0.193  Sum_probs=40.6

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.|.+.+.+.|+++ ++++|++|..+ ++.+..+.+ +|+++.|+.||.+.+...
T Consensus       193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        193 LLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            34556666677779998 78899999873 565544444 788999999998776654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.05  E-value=3.3e-06  Score=81.30  Aligned_cols=43  Identities=16%  Similarity=0.089  Sum_probs=38.1

Q ss_pred             cceEEEECCCchHHHHhhcc-ccCCCeEEEeccCCCCCCccccc
Q 014768            4 EYDVIVLGTGLKECILSGLL-SVDGLKVLHMDRNDYYGGESSSL   46 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~L-a~~G~~V~vlE~~~~~GG~~~t~   46 (419)
                      ...|+|||||++||.||.+| ++.|++|+|+||.+.+||..+.-
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            35799999999999999965 57899999999999999998753

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.05  E-value=3.2e-06  Score=80.69  Aligned_cols=34  Identities=35%  Similarity=0.449  Sum_probs=32.5

Q ss_pred             eEEEECCCchHHHHhhcc--ccCCCeEEEeccCCCC
Q 014768            6 DVIVLGTGLKECILSGLL--SVDGLKVLHMDRNDYY   39 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~L--a~~G~~V~vlE~~~~~   39 (419)
                      ||||||||++||++|++|  ++.|.+|+|+|+++..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8899999999998876

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.04  E-value=3.2e-06  Score=86.46  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=38.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||||++||++|..|++.|++|+|+|+++.+||..+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            36899999999999999999999999999999999999875

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.03  E-value=3.7e-06  Score=77.33  Aligned_cols=44  Identities=27%  Similarity=0.341  Sum_probs=37.7

Q ss_pred             CcceEEEECCCchHHHHhhcccc----C--CCeEEEeccCCCCCCccccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSV----D--GLKVLHMDRNDYYGGESSSL   46 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~----~--G~~V~vlE~~~~~GG~~~t~   46 (419)
                      ..+||+|||||++||+||.+|.+    +  -.+|+|+||...+||.+-+-
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSG  124 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSG  124 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecc
Confidence            35899999999999999998853    2  37999999999999987653

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.03  E-value=3e-06  Score=80.76  Aligned_cols=38  Identities=21%  Similarity=0.146  Sum_probs=34.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .||+|||||++|+.||..|+++|++|+|+|+++..|-.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p   38 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTP   38 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCc
Confidence            37999999999999999999999999999998876553

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.02  E-value=3.8e-06  Score=82.53  Aligned_cols=41  Identities=24%  Similarity=0.278  Sum_probs=38.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||||++||++|..|++.|++|+|+|+++.+||...
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            46899999999999999999999999999999999998764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.02  E-value=3.8e-06  Score=85.83  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=38.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||||++||++|..|++.|++|+|+|+++.+||.++
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            47899999999999999999999999999999999999875

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.01  E-value=4.1e-06  Score=82.27  Aligned_cols=41  Identities=27%  Similarity=0.407  Sum_probs=38.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||+|++||+||..|++.|++|+|+|+.+.+||..+
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            46899999999999999999999999999999999999775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.00  E-value=3.8e-06  Score=84.74  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=42.4

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~~  286 (419)
                      ..|.++|.+.+.+. |++++.++.|++|..+ ++++.||..    +|  ..+.|+.||.+.+
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATG  193 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATG  193 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCC
Confidence            35788888777665 7999999999999984 888888753    45  3789999987653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.00  E-value=4e-06  Score=83.51  Aligned_cols=39  Identities=26%  Similarity=0.424  Sum_probs=36.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+||+|||||++|++||.+|++.|++|+|+|.  .+||.+.
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            48999999999999999999999999999985  5899775

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.00  E-value=4.4e-06  Score=82.45  Aligned_cols=39  Identities=28%  Similarity=0.359  Sum_probs=36.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      |||+|||+|++|+++|+.|+++|++|+++|++...||..
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999999998754

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.97  E-value=5e-06  Score=82.57  Aligned_cols=43  Identities=26%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..++||||||||.+||.||..++++|.+|+|+||....+|.+.
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~   46 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV   46 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence            3568999999999999999999999999999999999886554

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.96  E-value=5.1e-06  Score=83.12  Aligned_cols=40  Identities=20%  Similarity=0.347  Sum_probs=35.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      .++||||||+|++||+||..+++. .+|+|+||.+..||.+
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t   46 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST   46 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence            358999999999999999999886 8999999999887754

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.95  E-value=5.4e-06  Score=80.09  Aligned_cols=42  Identities=26%  Similarity=0.192  Sum_probs=39.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~   46 (419)
                      .+|+|||||++||+||..|+++|++|+|+|+.+.+||+...-
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG  165 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG  165 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec
Confidence            589999999999999999999999999999999999998743

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.95  E-value=0.0003  Score=69.16  Aligned_cols=37  Identities=32%  Similarity=0.540  Sum_probs=33.6

Q ss_pred             CcceEEEECCCchHHHHhhccccC-CCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~   39 (419)
                      .+||.||||||-+|++.|.+|++. ..+|++||+...+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            569999999999999999999987 4899999997766

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.94  E-value=6e-06  Score=81.50  Aligned_cols=57  Identities=18%  Similarity=0.033  Sum_probs=42.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC---eEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g---~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|++|++++.+++|... ++.+ .|+. ++   +++.+|.||.+.+..|+
T Consensus       220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~~~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAKV-KVTFTDSTNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeE-EEEEecCCcceEEEeCEEEEEecCCcC
Confidence            346777778888999999999999999863 4443 3443 44   47999999987766553

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06996 hypothetical protein; Provisional

Probab=97.93  E-value=7.5e-06  Score=79.06  Aligned_cols=53  Identities=17%  Similarity=0.119  Sum_probs=39.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC---eEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g---~~i~ad~VV~~~~  286 (419)
                      ..+-+.|.+.+++.|++++++++|+++..+ ++.+ .++. ++   ++++||.||.+-+
T Consensus       115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~-~~~v-~v~~~~~~g~~~i~a~lvIgADG  171 (398)
T PRK06996        115 GSLVAALARAVRGTPVRWLTSTTAHAPAQD-ADGV-TLALGTPQGARTLRARIAVQAEG  171 (398)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeeeeec-CCeE-EEEECCCCcceEEeeeEEEECCC
Confidence            356777888888889999999999999763 4444 3444 33   6899999987644

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.91  E-value=7.7e-06  Score=80.43  Aligned_cols=57  Identities=9%  Similarity=0.040  Sum_probs=42.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCC--eEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG--ETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g--~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++.+ .+..+|  +++.+|.||.+.+..|+
T Consensus       211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~v-~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        211 EDIAHILREKLENDGVKIFTGAALKGLNSY-KKQA-LFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCEE-EEEECCceEEEEeCEEEEecCCccC
Confidence            357778888888999999999999999862 4432 344444  37999999987776553

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.90  E-value=8.4e-06  Score=70.62  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ||+|||||++|+.||..|++.|.+|+++|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999988654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.90  E-value=8.6e-06  Score=84.24  Aligned_cols=39  Identities=26%  Similarity=0.223  Sum_probs=35.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ..+|+|||||++||+||++|++.|++|+|+|+.+..|+.
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            468999999999999999999999999999998776654

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.90  E-value=7.7e-06  Score=73.08  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe--EEEcCEEE-eCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVV-CDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~--~i~ad~VV-~~~~~~~  289 (419)
                      -++-++|.+..+..||.++.+.+|.+... .+++++.|-+ ++.  .++||.+| .+.++..
T Consensus       258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffs  318 (421)
T COG3075         258 IRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFS  318 (421)
T ss_pred             hhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeecccccc
Confidence            36789999999999999999999999999 5999999887 554  46787655 5666653

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.90  E-value=5.1e-05  Score=67.50  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=43.1

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCc----EEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK----VVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~----v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+...+.+..+..|+++.+|-+|.+|... +..    -+.|.- .++++++..||.+++...
T Consensus       195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n-~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s  257 (453)
T KOG2665|consen  195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQN-KEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS  257 (453)
T ss_pred             hHHHHHHHHHHHHHhcccccccceeccchhc-cCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence            4678888888889999999999999999852 221    122222 578899999998887653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.90  E-value=1.2e-05  Score=58.19  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=33.7

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      +|+|||||..|+-+|..|++.|.+|+++|+++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            48999999999999999999999999999999987

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.89  E-value=1e-05  Score=76.75  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=38.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||+|.+|+.+|..|++.|++|+++|+.+.+||...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            46899999999999999999999999999999999998764

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.89  E-value=9.7e-06  Score=80.04  Aligned_cols=40  Identities=28%  Similarity=0.336  Sum_probs=38.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+|+|||+|++|++||..|++.|++|+|+|+.+.+||.+.
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            6899999999999999999999999999999999999775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.84  E-value=1.2e-05  Score=73.23  Aligned_cols=42  Identities=26%  Similarity=0.437  Sum_probs=39.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++|++|||+|++|-+||...++.|++...+|++..+||.|-
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL   79 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL   79 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence            359999999999999999999999999999999999999875

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.83  E-value=1.4e-05  Score=80.64  Aligned_cols=56  Identities=16%  Similarity=0.144  Sum_probs=40.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCC--CcEEEEEe----CCe--EEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE--GKVVGVTS----EGE--TAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~--~~v~gV~~----~g~--~i~ad~VV~~~~~  287 (419)
                      ..+...+.+.+++.+++++.++.|+++..+++  |+++||..    +|+  .+.|+.||++++-
T Consensus       126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG  189 (614)
T TIGR02061       126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGG  189 (614)
T ss_pred             hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCc
Confidence            34555555566667789999999999998422  78999874    443  5789999876643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.82  E-value=1.3e-05  Score=80.89  Aligned_cols=41  Identities=22%  Similarity=0.155  Sum_probs=38.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||+|++||++|..|++.|++|+|+|+++.+||..+
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            36899999999999999999999999999999999999765

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.77  E-value=1.7e-05  Score=81.09  Aligned_cols=42  Identities=24%  Similarity=0.282  Sum_probs=39.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ...|.|||+|++||+||..|-++|+-|+|+||.+++||....
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            368999999999999999999999999999999999998874

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.74  E-value=1.9e-05  Score=82.41  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=31.7

Q ss_pred             eEEEECCCchHHHHhhccccC--CCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~   38 (419)
                      +|+|||||++||++|..|++.  |++|+|+||++.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            799999999999999999998  899999999986

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.74  E-value=2.2e-05  Score=70.48  Aligned_cols=46  Identities=30%  Similarity=0.520  Sum_probs=38.0

Q ss_pred             CcceEEEECCCchHHHHhhccc----cCCCeEEEeccCCCC---------CCcccccch
Q 014768            3 EEYDVIVLGTGLKECILSGLLS----VDGLKVLHMDRNDYY---------GGESSSLNL   48 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La----~~G~~V~vlE~~~~~---------GG~~~t~~~   48 (419)
                      .++||+|||||..|+++|+.|.    +.|++|+|+|+++.+         ||-|..|.+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSl  143 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSL  143 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeeccc
Confidence            4689999999999999999885    457999999999864         666665554

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.73  E-value=2.2e-05  Score=77.31  Aligned_cols=56  Identities=23%  Similarity=0.245  Sum_probs=43.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      .+.+.+.+.++++|++++++++|++|+.+ ++++. +.+ +|+++.+|.||.+.+..|+
T Consensus       219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~g~~l~~D~vl~a~G~~pn  275 (466)
T PRK07845        219 DAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVV-VTLTDGRTVEGSHALMAVGSVPN  275 (466)
T ss_pred             HHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEE-EEECCCcEEEecEEEEeecCCcC
Confidence            46677778888999999999999999863 55443 444 7889999999987766553

>PRK13984 putative oxidoreductase; Provisional

Probab=97.73  E-value=2.4e-05  Score=79.73  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=38.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+|+|||+|++|+++|..|+++|++|+|+|+.+.+||...
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            46899999999999999999999999999999999999765

>TIGR03452 mycothione_red mycothione reductase

Probab=97.72  E-value=2.6e-05  Score=76.43  Aligned_cols=55  Identities=22%  Similarity=0.305  Sum_probs=39.3

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      .+.+.+.+. .+.|++++++++|++|..+ ++.+ .+.+ +|+++.+|.||.+.+..|.
T Consensus       211 ~~~~~l~~~-~~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       211 DISDRFTEI-AKKKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HHHHHHHHH-HhcCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccCcC
Confidence            345555443 3468999999999999873 5544 3444 7788999999988776553

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.70  E-value=2.6e-05  Score=82.73  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=33.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++||+|||||.+||+||..++++|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            58999999999999999999999999999999886

>PRK07846 mycothione reductase; Reviewed

Probab=97.69  E-value=3.2e-05  Score=75.74  Aligned_cols=54  Identities=19%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+. .+.|++++++++|++|..+ ++++ .+.+ +|+++.+|.||.+.+..|
T Consensus       208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~p  262 (451)
T PRK07846        208 DISERFTEL-ASKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVP  262 (451)
T ss_pred             HHHHHHHHH-HhcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCcc
Confidence            344445443 4568999999999999863 5443 3454 788999999998776654

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.67  E-value=2.6e-05  Score=65.31  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             cceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~   44 (419)
                      +.||||||+|-+||+||+..+++  ..+|.++|+.-.+||.++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            36999999999999999999955  489999999999999887

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.66  E-value=0.00059  Score=71.70  Aligned_cols=58  Identities=10%  Similarity=0.040  Sum_probs=45.2

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      .+.+.+.+.++++|+++++++.|++|..+..+....|.+ +|+++.+|.||.+++..|+
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn  246 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ  246 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence            345667788889999999999999997522244556666 8999999999998877664

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.65  E-value=3.5e-05  Score=76.41  Aligned_cols=39  Identities=31%  Similarity=0.345  Sum_probs=34.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      |||||||||++|+.||..+++.|.+|+|+|++...+|.+
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~   39 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC   39 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence            699999999999999999999999999999986554443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.58  E-value=3.9e-05  Score=67.43  Aligned_cols=42  Identities=17%  Similarity=0.353  Sum_probs=38.2

Q ss_pred             CcceEEEECCCchHHHHhhccccCC------CeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G------~~V~vlE~~~~~GG~~~   44 (419)
                      ...+|+|||||+.|.++|++|++++      ..|+++|+....||...
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG   56 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG   56 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence            4578999999999999999999988      89999999999888765

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.48  E-value=0.00029  Score=66.26  Aligned_cols=67  Identities=15%  Similarity=0.179  Sum_probs=55.6

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCc
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~  290 (419)
                      +++.|.+|   ...++.+|.+.+.++|++++.+++|++|.. +++++++|.++++++.||.||.+++.+..
T Consensus       125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSGDVQADQVVLAAGAWAG  194 (337)
T ss_pred             EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCCEEECCEEEEcCChhhh
Confidence            34455555   478999999999999999999999999998 47888888885558999999988877643

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.40  E-value=0.00016  Score=68.61  Aligned_cols=61  Identities=21%  Similarity=0.212  Sum_probs=46.2

Q ss_pred             EEEecCCcC-cHHHHHHHHHHH-cCcEEEcCCccceEEEcCCC-cEEEEEe--C-C--eEEEcCEEEeCC
Q 014768          224 YIYPLYGLG-ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEG-KVVGVTS--E-G--ETAKCKKVVCDP  285 (419)
Q Consensus       224 ~~~p~gG~~-~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~-~v~gV~~--~-g--~~i~ad~VV~~~  285 (419)
                      .++..+.++ .|..+|.+.+++ .+.+++.++.+.+|..+ ++ .+.||.+  . +  .++.|+.||.++
T Consensus       124 IlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~~~~~~~~~a~~vVLAT  192 (518)
T COG0029         124 ILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLNRNGELGTFRAKAVVLAT  192 (518)
T ss_pred             EEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEecCCCeEEEEecCeEEEec
Confidence            345556544 588899888876 58999999999999994 77 4558887  2 2  578899988654

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.00012  Score=70.25  Aligned_cols=42  Identities=36%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      |++.|||||||||.+|+-||...|+-|.+++++=-+-.-=|.
T Consensus         1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~   42 (621)
T COG0445           1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE   42 (621)
T ss_pred             CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee
Confidence            567799999999999999999999999999998776443333

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.26  E-value=0.00021  Score=68.90  Aligned_cols=55  Identities=22%  Similarity=0.163  Sum_probs=42.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      .+.+.+.+.++++|++++++++|++|..  ++.+ .+.+ +|+++.||.||.+.+..|+
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEECCCCEEECCEEEECCCCChh
Confidence            4556677788889999999999999874  3333 4555 8889999999988877653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.18  E-value=0.00025  Score=69.61  Aligned_cols=56  Identities=20%  Similarity=0.157  Sum_probs=45.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..  ++++..+.++++++.||.||.+++..|
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~a~G~~p  246 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIVATGVKP  246 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEECcCCCc
Confidence            45777888888999999999999999963  555666777777899999998887665

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.14  E-value=0.00033  Score=68.51  Aligned_cols=51  Identities=16%  Similarity=0.106  Sum_probs=40.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+++.|++++++++|++|..   .   .|.+ +|+++.+|.||.+.+..|
T Consensus       190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~p  241 (438)
T PRK13512        190 DMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHP  241 (438)
T ss_pred             HHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCc
Confidence            5677788888999999999999999852   2   2444 678899999998877665

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.11  E-value=0.00049  Score=63.05  Aligned_cols=43  Identities=14%  Similarity=-0.021  Sum_probs=38.3

Q ss_pred             cceEEEECCCchHHHHhhcccc--CCCeEEEeccCCCCCCccccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSSL   46 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~t~   46 (419)
                      ...|.|||+|++|+-+|..|-+  .+.+|.|+|+.+.|+|..+.-
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG   64 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG   64 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence            4589999999999999998876  469999999999999998854

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.05  E-value=0.00058  Score=66.46  Aligned_cols=51  Identities=20%  Similarity=0.046  Sum_probs=41.0

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.++++|++++++++|++|..  +    .|.+ +|+++.||.||.+++..|
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~  280 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGP  280 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCC
Confidence            4677778889999999999999998863  2    2445 788999999998876544

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.03  E-value=0.00057  Score=61.88  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=39.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||..|||||-+|+.+|.+.++.|.+|.|+|..-.+||.|-
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV   60 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV   60 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence            469999999999999999999999999999999889999875

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.97  E-value=0.00052  Score=61.67  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      ...|.|||||++|.-||+.+|++|..|.++|-++.-+--+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa   42 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA   42 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence            4579999999999999999999999999999987765444

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00054  Score=61.77  Aligned_cols=33  Identities=30%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      +||.||||||-+||+||.+.+..|.+|.++|--
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV   51 (503)
T KOG4716|consen   19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFV   51 (503)
T ss_pred             CccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence            589999999999999999999999999999963

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.93  E-value=0.00061  Score=66.02  Aligned_cols=40  Identities=28%  Similarity=0.337  Sum_probs=38.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+++|||+|..||.+|..|+++|++|+++|+++++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            5899999999999999999999999999999999999875

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=96.60  E-value=0.0063  Score=60.91  Aligned_cols=66  Identities=20%  Similarity=0.160  Sum_probs=53.2

Q ss_pred             EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCCCCCcc
Q 014768          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNK  291 (419)
Q Consensus       224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~~~~~~~  291 (419)
                      +++| .|   ...++.++++.+.++|++|+++++|++|+. +++++++|++    +|  .++.|+.||.+++.|...
T Consensus       118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~  192 (516)
T TIGR03377       118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR  192 (516)
T ss_pred             EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence            4455 34   357899999999999999999999999998 4888887765    34  379999999999888543

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.59  E-value=0.002  Score=61.39  Aligned_cols=51  Identities=14%  Similarity=0.085  Sum_probs=40.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.++++|++++++++|++|..  +    .|.+ +|+++.+|.||.+++..|
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCCh
Confidence            4667777888999999999999998852  2    3455 788999999998887654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.52  E-value=0.002  Score=54.74  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=27.6

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||.|..||.+|..||++|++|+.+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            799999999999999999999999999999864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.51  E-value=0.0019  Score=53.40  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=30.5

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||||-.|.++|..|+++|++|+++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999976

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.49  E-value=0.0018  Score=54.80  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=28.8

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||+|..|...|..++.+|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            589999999999999999999999999999654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.47  E-value=0.0028  Score=60.16  Aligned_cols=52  Identities=27%  Similarity=0.302  Sum_probs=41.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe-EEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~-~i~ad~VV~~~~~~~  289 (419)
                      .++.+...+.++++|++|++++.|++|.-+      +|++ +|+ +|.|+.||-+++..+
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a  262 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRA  262 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCcC
Confidence            467777788899999999999999999742      4555 566 599999998887654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.44  E-value=0.0025  Score=61.08  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      .+.+.+.+.+++.|++++++++|++|..+ ++. ..|.+ +|+++.||.||.+.+..|.
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEEEECcCCCcc
Confidence            45667778888999999999999999863 443 34555 8889999999998877653

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.38  E-value=0.0025  Score=60.29  Aligned_cols=34  Identities=29%  Similarity=0.526  Sum_probs=30.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..|||||||||.+|+-||+..|+-|.+.+++-.+
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            4689999999999999999999999988888765

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.36  E-value=0.0033  Score=58.43  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=30.8

Q ss_pred             cceEEEECCCchHHHHhhccccCC----CeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G----~~V~vlE~~~~   38 (419)
                      .+||+|||||+.|++.|+.|...-    ++|+++|..+.
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            689999999999999999998643    69999999744

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.13  E-value=0.0043  Score=59.89  Aligned_cols=39  Identities=18%  Similarity=0.191  Sum_probs=35.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      .+++|||+|..|+-+|..|++.|.+|+|+|+.+.+.++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            479999999999999999999999999999999886654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.08  E-value=0.0049  Score=56.42  Aligned_cols=39  Identities=21%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             CCCc-ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            1 MDEE-YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         1 m~~~-~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      |+.. .+|.|||+|..|...|..|+++|++|+++|.++..
T Consensus         1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            4444 47999999999999999999999999999998653

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.03  E-value=0.0052  Score=56.58  Aligned_cols=38  Identities=24%  Similarity=0.196  Sum_probs=34.2

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |++..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            56667899999999999999999999999999998753

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.02  E-value=0.006  Score=58.25  Aligned_cols=40  Identities=13%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             ceEEEECCCchHHHHhhccccC--C-CeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--G-LKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--G-~~V~vlE~~~~~GG~~~   44 (419)
                      ++|+|||+|.+|++.|.+|.+.  . ..|.|+|+.+..|+-..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia   44 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA   44 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence            6899999999999999999753  2 23999999999987654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.89  E-value=0.0063  Score=59.98  Aligned_cols=34  Identities=32%  Similarity=0.366  Sum_probs=32.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      +|.|||.|.+|+++|..|+++|++|++.|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999998775

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.83  E-value=0.0075  Score=59.82  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|+|||+|.+|+.+|..|+++|++|+++|+++.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4799999999999999999999999999998764

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=95.82  E-value=0.0041  Score=54.28  Aligned_cols=53  Identities=17%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             EEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCcccccchHHHHHhhcCCC
Q 014768            7 VIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE   59 (419)
Q Consensus         7 vvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~   59 (419)
                      .+||||||+|.+||-.|++.  ..+|+++-+.+.+-.-.+....+.+.+.|....
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~e   56 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKE   56 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccc
Confidence            68999999999999999853  469999999888766666666666667776554

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.75  E-value=0.007  Score=56.20  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||+|..|.+.|..|+++|++|+++|+++.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.71  E-value=0.0095  Score=58.33  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=34.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+|+|||+|..|+.+|..|++.|.+|+++|+.+.+.++
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence            47999999999999999999999999999999887544

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.0052  Score=55.85  Aligned_cols=39  Identities=23%  Similarity=0.436  Sum_probs=32.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .|||+|||+|++|.+||.+.||+|.+.=++  .++.||..-
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl  249 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL  249 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence            499999999999999999999999876554  245788653

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.66  E-value=0.01  Score=56.90  Aligned_cols=37  Identities=27%  Similarity=0.212  Sum_probs=33.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~  178 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA  178 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc
Confidence            4799999999999999999999999999999887653

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.64  E-value=0.0092  Score=59.04  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||||..|+-+|..|++.|.+|+++|+++.+.
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il  216 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL  216 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC
Confidence            479999999999999999999999999999988764

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.57  E-value=0.04  Score=52.20  Aligned_cols=61  Identities=16%  Similarity=0.120  Sum_probs=47.1

Q ss_pred             CeEEEecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCeEEEcCEEEeCCC
Q 014768          222 SPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPS  286 (419)
Q Consensus       222 ~~~~~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~~i~ad~VV~~~~  286 (419)
                      .+.+||.-. ...++++|.+.+++.|++|+++++|++| .  +++ ..+.+  +++.++||+||.+++
T Consensus        75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~~~-~~v~~~~~~~~~~a~~vIlAtG  138 (376)
T TIGR03862        75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--GGT-LRFETPDGQSTIEADAVVLALG  138 (376)
T ss_pred             CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--CCc-EEEEECCCceEEecCEEEEcCC
Confidence            345688544 7789999999999999999999999999 2  333 45665  335799999886553

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=95.54  E-value=0.057  Score=51.07  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=64.5

Q ss_pred             CcccHHHHHHHcCCChhHH-HHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccC-CCeEEEecCCcCcHHHHHHH
Q 014768          163 TRVTTRELIAKYGLDDNTI-DFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFAR  240 (419)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~p~gG~~~l~~al~~  240 (419)
                      ...+..+++++.++++.+. +++......    +|.+..-..++   ...    ....| ..+.+.++||..+|++.|.+
T Consensus        68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRv----NYgQ~~~i~a~---~G~----vSla~a~~gl~sV~GGN~qI~~~ll~  136 (368)
T PF07156_consen   68 TKVTGEEYLKENGISERFINELVQAATRV----NYGQNVNIHAF---AGL----VSLAGATGGLWSVEGGNWQIFEGLLE  136 (368)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhheEe----ecccccchhhh---hhh----eeeeeccCCceEecCCHHHHHHHHHH
Confidence            4566778888888887764 343322222    22221111221   111    11113 45678999999999999998


Q ss_pred             HHHHcCcEEEcCCccceE-EEcCCCc-EEEEEe---CC-eEEEcCEEEeCCCC
Q 014768          241 LSAVYGGTYMLNKPECKV-EFDEEGK-VVGVTS---EG-ETAKCKKVVCDPSY  287 (419)
Q Consensus       241 ~~~~~G~~i~~~~~V~~I-~~~~~~~-v~gV~~---~g-~~i~ad~VV~~~~~  287 (419)
                      ..   |+++ ++++|++| ....++. ...|..   .+ ..-..|.||.++.+
T Consensus       137 ~S---~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl  185 (368)
T PF07156_consen  137 AS---GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL  185 (368)
T ss_pred             Hc---cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence            76   8899 99999999 3322332 223333   22 23346999987754

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.51  E-value=0.012  Score=48.27  Aligned_cols=31  Identities=19%  Similarity=0.426  Sum_probs=29.0

Q ss_pred             EEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |+|+|+|-.|+..|++|+++|++|+++-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999853

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.50  E-value=0.013  Score=54.36  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=31.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998763

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.44  E-value=0.012  Score=51.87  Aligned_cols=33  Identities=27%  Similarity=0.482  Sum_probs=31.4

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +++|||+|-.|.+.|..|++.|++|+++|+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            799999999999999999999999999999765

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.44  E-value=0.012  Score=58.04  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=34.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  207 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP  207 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence            4799999999999999999999999999999987653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.40  E-value=0.015  Score=54.12  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|.|||+|..|...|..|+++|++|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3689999999999999999999999999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.38  E-value=0.014  Score=53.65  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=31.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998753

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.32  E-value=0.012  Score=54.14  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            699999999999999999999999999999754

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.31  E-value=0.0072  Score=56.78  Aligned_cols=36  Identities=36%  Similarity=0.567  Sum_probs=27.6

Q ss_pred             cceEEEECCCchHHHHhhccccCC-CeEEEeccCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY   39 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~   39 (419)
                      .+|+|+||.|+++|+.|+.|...+ .+++.|||.+..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            589999999999999999999877 999999997753

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.31  E-value=0.013  Score=54.68  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=30.5

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ++.|||+|-.||+.|..||+.|++|+.+|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            68999999999999999999999999999865

>TIGR02053 MerA mercuric reductase

Probab=95.28  E-value=0.014  Score=57.59  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=33.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  203 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP  203 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence            4799999999999999999999999999999887653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.28  E-value=0.015  Score=56.35  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=33.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |. ..+|.|||.|..|+..|..|+++|++|+++|.++.
T Consensus         1 m~-~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          1 MS-FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             CC-ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            44 45899999999999999999999999999998654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.27  E-value=0.016  Score=53.95  Aligned_cols=37  Identities=22%  Similarity=0.431  Sum_probs=33.3

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |..-.+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus         1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            5555689999999999999999999999999999865

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.01  Score=50.53  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEecc---CC-CCCCcccccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDR---ND-YYGGESSSLN   47 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~---~~-~~GG~~~t~~   47 (419)
                      -+|+|||+|+++-.||.+++++-.+-+++|-   ++ -+||...|.+
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT   55 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT   55 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence            4899999999999999999999999999995   33 3588776543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.26  E-value=0.015  Score=57.47  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=34.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+.+...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence            47999999999999999999999999999999876543

>PRK06370 mercuric reductase; Validated

Probab=95.21  E-value=0.017  Score=56.93  Aligned_cols=38  Identities=13%  Similarity=0.192  Sum_probs=34.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            47999999999999999999999999999999887654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.19  E-value=0.016  Score=56.91  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=34.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            4799999999999999999999999999999987753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.18  E-value=0.019  Score=56.51  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=32.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|+|||+|..|+.+|..|+++|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999975

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.18  E-value=0.017  Score=53.20  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |+.-.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            55556799999999999999999999999999998753

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.16  E-value=0.017  Score=56.10  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=34.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      -.++|||||..|+-.|..+++-|.+|+|+|+.+++--
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp  210 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP  210 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            3699999999999999999999999999999998754

>PRK04148 hypothetical protein; Provisional

Probab=95.16  E-value=0.015  Score=46.01  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .++++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 998889999999999999999877

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.15  E-value=0.018  Score=56.90  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=33.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~  211 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP  211 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            4799999999999999999999999999999887644

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.13  E-value=0.017  Score=56.89  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=33.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            4799999999999999999999999999999887643

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.12  E-value=0.018  Score=56.86  Aligned_cols=37  Identities=14%  Similarity=0.114  Sum_probs=33.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  209 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP  209 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence            4799999999999999999999999999999887643

>PRK07846 mycothione reductase; Reviewed

Probab=95.11  E-value=0.018  Score=56.48  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=33.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||||..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            479999999999999999999999999999988764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.06  E-value=0.019  Score=56.23  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=34.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      -+++|||||..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~  185 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK  185 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence            4799999999999999999999999999999887654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.99  E-value=0.02  Score=56.52  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=33.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  209 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP  209 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence            4799999999999999999999999999999876643

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.97  E-value=0.021  Score=55.76  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=33.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~  173 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL  173 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence            479999999999999999999999999999988763

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.91  E-value=0.025  Score=55.83  Aligned_cols=38  Identities=21%  Similarity=0.389  Sum_probs=34.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  213 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF  213 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            47999999999999999999999999999999877543

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.87  E-value=0.027  Score=52.84  Aligned_cols=37  Identities=30%  Similarity=0.327  Sum_probs=33.1

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |....+|.|||+|..|...|..|+++|++|++++++.
T Consensus         1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4445689999999999999999999999999999954

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=94.84  E-value=0.022  Score=50.81  Aligned_cols=36  Identities=14%  Similarity=-0.007  Sum_probs=28.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCC-------CeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G-------~~V~vlE~~~~   38 (419)
                      +..+++|||+|+.||++|..+.+.+       .+|+|++-...
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~   44 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT   44 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence            3569999999999999998777643       58888876544

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=94.83  E-value=0.025  Score=55.80  Aligned_cols=37  Identities=30%  Similarity=0.291  Sum_probs=34.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4799999999999999999999999999999988764

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.80  E-value=0.07  Score=45.99  Aligned_cols=54  Identities=20%  Similarity=0.222  Sum_probs=39.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                      ..+.+-|.+.++++|.+++++++|++|..+ +++ +.|++ +++++.||+||.+.+.
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~~~~~~a~~VVlAtG~  136 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRDGRTIRADRVVLATGH  136 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETTS-EEEEEEEEE---S
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEecceeeeeeEEEeeec
Confidence            446667778888889999999999999985 665 56777 6679999999987765

...

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.78  E-value=0.022  Score=52.48  Aligned_cols=34  Identities=18%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.78  E-value=0.023  Score=53.66  Aligned_cols=31  Identities=35%  Similarity=0.597  Sum_probs=29.8

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      +|.|||+|..|...|..|+++|++|++++++
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            6999999999999999999999999999985

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=94.74  E-value=0.026  Score=55.85  Aligned_cols=37  Identities=16%  Similarity=0.187  Sum_probs=34.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  220 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA  220 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence            4799999999999999999999999999999887644

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.66  E-value=0.027  Score=52.19  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|-.|...|..|+++|++|+++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            59999999999999999999999999999853

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.66  E-value=0.028  Score=52.09  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .++|.|||+|-.|...|++|+++|.+|+++.+..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            3579999999999999999999999999999963

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.61  E-value=0.027  Score=51.62  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            3799999999999999999999999999997654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.60  E-value=0.04  Score=45.91  Aligned_cols=33  Identities=21%  Similarity=0.140  Sum_probs=29.8

Q ss_pred             cceEEEECCCc-hHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi-~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..+|+|||+|- .|..+|.+|.+.|.+|+++.++
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            46899999995 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03452 mycothione_red mycothione reductase

Probab=94.58  E-value=0.029  Score=55.16  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            4799999999999999999999999999999887643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=94.51  E-value=0.13  Score=46.21  Aligned_cols=57  Identities=21%  Similarity=0.109  Sum_probs=45.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC------------CeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE------------GETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~------------g~~i~ad~VV~~~~~~  288 (419)
                      ..+...|.+.+++.|++++++++|.++..++++++.+|..+            ..+++|+.||.+++..
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~  172 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD  172 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence            56888899999999999999999999987434478877642            2479999999776543

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.51  E-value=0.03  Score=47.82  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=33.2

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ....|.|||||..|.-.|-..+..|+.|.+++++...
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a   46 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA   46 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence            4467999999999999999999999999999998653

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.46  E-value=0.034  Score=55.24  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=32.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |..-.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus         1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3334579999999999999999999999999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=94.46  E-value=0.038  Score=54.57  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      .+++|||+|..|+-.|..|++.|.+|+++|+.+.+....
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~  216 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE  216 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence            379999999999999999999999999999988776543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.44  E-value=0.031  Score=58.78  Aligned_cols=37  Identities=19%  Similarity=0.073  Sum_probs=33.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+.+-.
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~  177 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA  177 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence            4799999999999999999999999999999887643

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.37  E-value=0.036  Score=55.48  Aligned_cols=36  Identities=22%  Similarity=0.035  Sum_probs=33.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence            489999999999999999999999999999887663

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.36  E-value=0.028  Score=50.52  Aligned_cols=43  Identities=30%  Similarity=0.417  Sum_probs=37.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC--------CCCCCccccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN--------DYYGGESSSL   46 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~--------~~~GG~~~t~   46 (419)
                      .-+|+|||+|..|.-+|..+..-|.+|+++|.|        +..||+..+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~  218 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL  218 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE
Confidence            358999999999999999999999999999998        4577775543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.29  E-value=0.034  Score=51.51  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=28.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEecc
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~   35 (419)
                      +|.|||+|..|...|..|+++|++|+++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999987

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.28  E-value=0.035  Score=53.85  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||.|..|+..|..|+++|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=94.23  E-value=0.038  Score=56.50  Aligned_cols=38  Identities=11%  Similarity=0.091  Sum_probs=34.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~  350 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL  350 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence            36999999999999999999999999999999887643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=94.22  E-value=0.039  Score=54.13  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=33.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l  202 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL  202 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence            469999999999999999999999999999988763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PTZ00058 glutathione reductase; Provisional

Probab=94.18  E-value=0.038  Score=55.57  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=33.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|||+|..|+-.|..|++.|.+|+++|+++.+.
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il  273 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL  273 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence            479999999999999999999999999999988765

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.11  E-value=0.041  Score=51.52  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|..|...|..|+++|++|+++++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=94.11  E-value=0.04  Score=58.18  Aligned_cols=37  Identities=19%  Similarity=0.132  Sum_probs=33.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|+.|+-+|..|++.|.+|+|+|+.+.+-.
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~  182 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA  182 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence            4699999999999999999999999999999887543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.11  E-value=0.049  Score=50.32  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~   38 (419)
                      .+|.|||+|..|+.+|+.|+..|+ +|+++|.+..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            479999999999999999999886 8999999443

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.07  E-value=0.046  Score=50.65  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             eEEEECCCchHHHHhhccccCC--CeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~   38 (419)
                      +|.|||+|..|.++|+.|+++|  .+|.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            6999999999999999999999  58999999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.04  E-value=0.05  Score=45.51  Aligned_cols=34  Identities=21%  Similarity=0.141  Sum_probs=29.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|+|+|+|..|..||..|...|.+|+++|.+.
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            3689999999999999999999999999999854

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.94  E-value=0.051  Score=41.27  Aligned_cols=34  Identities=26%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|+|||+|-.|..-+..|.+.|.+|+|+-...
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4689999999999999999999999999999874

>PLN02507 glutathione reductase

Probab=93.93  E-value=0.048  Score=54.28  Aligned_cols=36  Identities=19%  Similarity=0.145  Sum_probs=33.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||+|..|+-.|..|++.|.+|+++++.+.+-
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l  239 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL  239 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence            479999999999999999999999999999988653

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.81  E-value=0.056  Score=52.98  Aligned_cols=37  Identities=16%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      -+++|||+|..|+-.|..|++.|.+|+++|+++.+..
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  195 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP  195 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            3799999999999999999999999999999877643

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.81  E-value=0.054  Score=54.74  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=32.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||||..|+-.|..|++.|.+|+++++.+..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            47999999999999999999999999999998864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.79  E-value=0.06  Score=49.96  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +..+|.|||+|..|...|..|+++|++|+++.++..
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            345899999999999999999999999999999753

>PRK10262 thioredoxin reductase; Provisional

Probab=93.77  E-value=0.058  Score=50.38  Aligned_cols=35  Identities=26%  Similarity=0.203  Sum_probs=32.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            47999999999999999999999999999998765

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=93.72  E-value=0.18  Score=50.99  Aligned_cols=53  Identities=15%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~  285 (419)
                      ..|.++|.+.+++.|++|+.++.|++++.+ +|+|+||..    +|+  .+.|+.||+++
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILAT  177 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLAT  177 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECC
Confidence            468999999999999999999999999984 899999864    353  57899988755

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.61  E-value=0.057  Score=53.01  Aligned_cols=34  Identities=21%  Similarity=0.138  Sum_probs=31.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999999765

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.61  E-value=0.06  Score=53.94  Aligned_cols=35  Identities=17%  Similarity=-0.041  Sum_probs=32.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||||..|+-+|..|+..|.+|+++++.+.+
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            47999999999999999999999999999998765

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=93.54  E-value=0.079  Score=49.31  Aligned_cols=39  Identities=18%  Similarity=0.283  Sum_probs=34.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCC-eEEEeccCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYY   39 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~   39 (419)
                      |-+..+|+|||+|..|...|..|+..|+ +|.++|.++..
T Consensus         3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            4455789999999999999999999995 99999997764

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=93.50  E-value=0.085  Score=45.63  Aligned_cols=35  Identities=20%  Similarity=0.137  Sum_probs=31.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...|+|||||-.|...+..|.+.|.+|+|+.....
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            35799999999999999999999999999987543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=93.43  E-value=0.2  Score=47.97  Aligned_cols=58  Identities=21%  Similarity=0.264  Sum_probs=49.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+....++.|+++++++.+.+++-.++|+++-|.+ +|.++.||.||+..+..|
T Consensus       255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP  313 (478)
T ss_pred             HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence            4577778889999999999999999999766789999998 999999999987655443

>PLN02546 glutathione reductase

Probab=93.42  E-value=0.066  Score=53.88  Aligned_cols=37  Identities=14%  Similarity=0.100  Sum_probs=33.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence            4799999999999999999999999999999887654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.41  E-value=0.057  Score=53.54  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.39  E-value=0.085  Score=45.55  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ...|+|||||-.|...|..|.++|.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            468999999999999999999999999999864

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.36  E-value=0.092  Score=49.21  Aligned_cols=39  Identities=33%  Similarity=0.477  Sum_probs=34.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCC-CeEEEeccCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY   39 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~   39 (419)
                      |++.+|+|.||-|+.-|+.|+.|...+ ++++.|||.+..
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            567799999999999999999999876 889999998863

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.35  E-value=0.059  Score=51.57  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=28.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||.|..|+..|..|+. |++|+++|.++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            59999999999999988885 999999998764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.35  E-value=0.068  Score=53.10  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=31.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5699999999999999999999999999998765

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.34  E-value=0.084  Score=42.33  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=30.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCe-EEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~   36 (419)
                      ...++|||+|=+|-.++..|++.|.+ |+|+-|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46899999999999999999999976 9999885

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.34  E-value=0.079  Score=45.65  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~   36 (419)
                      ..+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4689999999999999999999998 69999986

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.33  E-value=0.069  Score=52.40  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=29.5

Q ss_pred             eEEEECCCchHHHHhhccccCC--CeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~   38 (419)
                      +|.|||+|..|+.+|..||++|  ++|+.+|.+..
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            6999999999999999999884  88999997653

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.31  E-value=0.25  Score=50.12  Aligned_cols=54  Identities=24%  Similarity=0.281  Sum_probs=44.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~  285 (419)
                      ..|..+|.+.+.+.|++++.++.+++++.+++|+|+||..    +|+  .+.|+.||+++
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLAT  185 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLAT  185 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECC
Confidence            4689999998888999999999999999844789999875    454  57899988655

>PRK13748 putative mercuric reductase; Provisional

Probab=93.31  E-value=0.075  Score=53.89  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+++|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  304 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL  304 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            4799999999999999999999999999998643

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.26  E-value=0.059  Score=49.25  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||.|..|.+.|..|+++|++|+++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=93.18  E-value=0.065  Score=48.42  Aligned_cols=56  Identities=16%  Similarity=0.203  Sum_probs=38.2

Q ss_pred             CCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC--C--eEEEcCEEEeCC
Q 014768          229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE--G--ETAKCKKVVCDP  285 (419)
Q Consensus       229 gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~--g--~~i~ad~VV~~~  285 (419)
                      -|....+++|.+.+++...++.+.....++..+ +.+++=--++  |  ++++.+-+-+++
T Consensus       233 FgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~-~~~AvFe~L~kPG~t~ei~yslLHv~P  292 (446)
T KOG3851|consen  233 FGVKHYADALEKVIQERNITVNYKRNLIEVRTN-DRKAVFENLDKPGVTEEIEYSLLHVTP  292 (446)
T ss_pred             ecHHHHHHHHHHHHHhcceEeeeccceEEEecc-chhhHHHhcCCCCceeEEeeeeeeccC
Confidence            466788999999999999999999998888863 4433211122  3  356666554444

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.17  E-value=0.077  Score=49.71  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|--|.+.|..|+++|++|+++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999999999999999854

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.13  E-value=0.071  Score=50.54  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCe-EEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~   38 (419)
                      ..|+|||+|..|+-+|..|++.|.+ |+|+++.+.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            4799999999999999999999986 999998654

>PRK12831 putative oxidoreductase; Provisional

Probab=93.11  E-value=0.076  Score=52.33  Aligned_cols=34  Identities=21%  Similarity=0.049  Sum_probs=31.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      -+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999998764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.09  E-value=0.11  Score=42.88  Aligned_cols=31  Identities=19%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEec
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMD   34 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE   34 (419)
                      ...|+|||||-.|..-|..|.+.|.+|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4679999999999999999999999999995

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.07  E-value=0.085  Score=50.90  Aligned_cols=36  Identities=25%  Similarity=0.179  Sum_probs=33.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ..+|+|+|-|.+|++||..|.+.|.+|++.|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            357999999999999999999999999999988776

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.05  E-value=0.075  Score=50.57  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=31.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|+|||+|..|+.+|..|.+.|.+|++++++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.96  E-value=0.09  Score=48.37  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=32.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            47999999999999999999999999999997654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR00292 thiazole biosynthesis enzyme

Probab=92.94  E-value=0.4  Score=43.06  Aligned_cols=55  Identities=16%  Similarity=0.114  Sum_probs=44.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCC--cEEEEEeC------------CeEEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG--KVVGVTSE------------GETAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~--~v~gV~~~------------g~~i~ad~VV~~~~~  287 (419)
                      ..+.+.|.+.+.+.|++++.++.|.++..+ ++  ++.||.++            ..+++|+.||.+.+.
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~-~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~  168 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITR-DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH  168 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence            467888888999999999999999999984 55  68888752            247899999977653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PTZ00052 thioredoxin reductase; Provisional

Probab=92.91  E-value=0.093  Score=52.26  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      -+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            37999999999999999999999999999974

>PRK14727 putative mercuric reductase; Provisional

Probab=92.88  E-value=0.1  Score=51.80  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      -+++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~  221 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST  221 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            479999999999999999999999999999753

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.85  E-value=0.075  Score=55.21  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=31.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|.|||||..|...|..++.+|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999999754

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.84  E-value=0.091  Score=51.77  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|+|.|.+|+++|..|.+.|++|++.|+++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            3799999999999999999999999999998763

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.76  E-value=0.11  Score=43.28  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=28.4

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||-|..|...|..|.++|++|.++++++
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            79999999999999999999999999999864

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=92.76  E-value=0.091  Score=52.09  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      -+++|||||..|+-+|..|++.|.+|+++++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            36999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.74  E-value=0.1  Score=49.34  Aligned_cols=31  Identities=26%  Similarity=0.440  Sum_probs=30.0

Q ss_pred             eEEEECCCchHHHHhhccccCC-CeEEEeccC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~   36 (419)
                      +|+|||+|-.|.++|..|+++| .+|++.+|+
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            7999999999999999999999 999999997

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=92.73  E-value=0.32  Score=44.45  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=42.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEE-EeCCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV-~~~g~~i~ad~VV~~~~~~  288 (419)
                      ..+-+.|.+.+++.|++++++++|+++..+ ++++... +.++.+++||.||.+.+..
T Consensus        91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~a~~vv~a~G~~  147 (295)
T TIGR02032        91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVVVIVRGGEGTVTAKIVIGADGSR  147 (295)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEEEEEcCccEEEEeCEEEECCCcc
Confidence            357778888888899999999999999874 5554322 2255789999998776553

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.66  E-value=0.11  Score=47.48  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..|.|||||..|-..|..+|..|++|+++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            57999999999999999999988999999998

>PRK06116 glutathione reductase; Validated

Probab=92.65  E-value=0.4  Score=47.17  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=44.4

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      .+.+.+.+.+++.|++++++++|++|..++++.+ .+.+ +|+++.||.||.+.+..|.
T Consensus       209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPN  266 (450)
T ss_pred             HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcC
Confidence            5777888888999999999999999986323333 3555 7889999999988766553

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.63  E-value=0.084  Score=54.77  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|.|||||..|...|..++.+|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.44  E-value=0.3  Score=34.92  Aligned_cols=40  Identities=20%  Similarity=0.146  Sum_probs=32.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG  273 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g  273 (419)
                      ..+.+.+.+.+++.|+++++++.|++|..+ ++++. |++ ||
T Consensus        40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~~~-V~~~~g   80 (80)
T PF00070_consen   40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDGVE-VTLEDG   80 (80)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTSEE-EEEETS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEEE-EEEecC
Confidence            356777888899999999999999999985 44466 776 54

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.34  E-value=0.1  Score=40.38  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=28.7

Q ss_pred             EEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |+|+|.|-.|...|..|.+.+.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            69999999999999999998889999999764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.32  E-value=0.12  Score=45.23  Aligned_cols=32  Identities=31%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             eEEEEC-CCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.||| +|..|.+.|..|+++|++|+++.+++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            699997 79999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=92.24  E-value=0.47  Score=46.56  Aligned_cols=35  Identities=11%  Similarity=0.177  Sum_probs=31.9

Q ss_pred             eEEEECCCchHHHHhhccccCC--CeEEEeccCCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYG   40 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~G   40 (419)
                      +|||||||++|+++|..|++.|  .+|+|+|+++..+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~   38 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS   38 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence            7999999999999999999876  5999999999864

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.01  E-value=0.14  Score=49.18  Aligned_cols=35  Identities=17%  Similarity=0.080  Sum_probs=31.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...|+|+|+|..|+.+|..|...|.+|+++|.++.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            35799999999999999999999999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.95  E-value=0.12  Score=51.01  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .-+|+|+|+|..||.|+..+...|.+|+++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999999865

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.92  E-value=0.14  Score=50.57  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=31.6

Q ss_pred             cceEEEECCCchHHH-HhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~-aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|.|||.|-+|++ +|..|.+.|++|++.|.++.
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            357999999999999 59999999999999998765

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.81  E-value=0.14  Score=50.49  Aligned_cols=34  Identities=12%  Similarity=-0.152  Sum_probs=31.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            4799999999999999999999999999997654

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.80  E-value=0.12  Score=53.85  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            4699999999999999999999999999998764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=91.79  E-value=0.12  Score=47.60  Aligned_cols=32  Identities=19%  Similarity=0.164  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||.|..|...|..|+++|++|+++++++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            47899999999999999999999999999875

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.73  E-value=0.16  Score=49.85  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=31.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|+|+|+|-.|+++|..|+++|++|++.|++..
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            4689999999999999999999999999998653

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.68  E-value=0.17  Score=46.92  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=30.2

Q ss_pred             eEEEECCCchHHHHhhccccCC--CeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~   38 (419)
                      +|+|||+|-.|.++|..|+..|  .+|.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            6999999999999999999999  58999999754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.64  E-value=0.15  Score=50.73  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..|+|+|.|.+|++++..|.+.|.+|++.|.++
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            479999999999999999999999999999753

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.64  E-value=0.18  Score=49.56  Aligned_cols=32  Identities=19%  Similarity=0.133  Sum_probs=28.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|+|+|.|.+|.++|..|.+ |.+|+|.|.+.
T Consensus         7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~   38 (454)
T PRK01368          7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK   38 (454)
T ss_pred             CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence            579999999999999999995 99999999653

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.62  E-value=0.2  Score=49.20  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=32.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ..++|+|.|-+|+++|..|++.|++|++.|..+..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            47999999999999999999999999999987654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.60  E-value=0.15  Score=50.23  Aligned_cols=34  Identities=21%  Similarity=0.128  Sum_probs=31.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~   38 (419)
                      -+|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            479999999999999999999997 8999998654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=91.53  E-value=0.098  Score=48.54  Aligned_cols=40  Identities=23%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+.+|||||..||-.+.--.+-|.+||++|..+.+||.+-
T Consensus       212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD  251 (506)
T KOG1335|consen  212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD  251 (506)
T ss_pred             ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC
Confidence            4689999999999999999999999999999999999854

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.47  E-value=0.21  Score=43.09  Aligned_cols=33  Identities=30%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..++|+|.|-.|..+|..|.+.|.+|++.|.+.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999999863

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=91.44  E-value=0.19  Score=47.93  Aligned_cols=33  Identities=21%  Similarity=0.525  Sum_probs=30.7

Q ss_pred             ceEEEEC-CCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..|.||| .|..|-+.|..|.++|++|+++++++
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            5799999 89999999999999999999999865

>PRK06223 malate dehydrogenase; Reviewed

Probab=91.41  E-value=0.19  Score=46.63  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~   38 (419)
                      .+|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            489999999999999999999876 9999999654

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=91.40  E-value=0.16  Score=40.61  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=27.9

Q ss_pred             EEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++|+|+|..+...|..++.-|++|+|+|-++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999854

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=91.30  E-value=0.18  Score=46.48  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||.|..|...|..|++.|++|+++++++
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            79999999999999999999999999999875

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.29  E-value=0.24  Score=46.03  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCC--eEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~~   38 (419)
                      ..+|.|||+|-.|.++|+.|+..|.  ++.++|.+..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            3799999999999999999999996  8999998643

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.28  E-value=0.19  Score=49.41  Aligned_cols=38  Identities=24%  Similarity=0.306  Sum_probs=33.5

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |..+--|+|||.|-+|+++|..|.+.|++|++.|.++.
T Consensus         3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~   40 (448)
T PRK03803          3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ   40 (448)
T ss_pred             cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence            55556799999999999999999999999999998653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=91.25  E-value=0.72  Score=48.74  Aligned_cols=55  Identities=18%  Similarity=0.216  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       234 l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      +.+.+.+.++++|+++++++.|++|.-  ++++.+|++ +|+++.+|.||.+++..|+
T Consensus       184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       184 AGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPN  239 (785)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            455667788889999999999999874  456667776 8899999999998887654

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=91.20  E-value=0.15  Score=52.84  Aligned_cols=34  Identities=26%  Similarity=0.255  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccc-cCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La-~~G~~V~vlE~~~~   38 (419)
                      ..|.|||||..|...|..++ ++|++|+++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            36999999999999999998 68999999999764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.12  E-value=0.2  Score=46.16  Aligned_cols=34  Identities=29%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|+|||.|-.|..+|..|.+.|.+|+++++++
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999984

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=91.08  E-value=0.59  Score=47.26  Aligned_cols=55  Identities=15%  Similarity=0.180  Sum_probs=40.5

Q ss_pred             cHHHHHHHHHH---Hc-CcEEEcCCccceEEEcCCCcEEEEEe----C--------------C-eEEEcCEEEe-CCCCC
Q 014768          233 ELPQAFARLSA---VY-GGTYMLNKPECKVEFDEEGKVVGVTS----E--------------G-ETAKCKKVVC-DPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~---~~-G~~i~~~~~V~~I~~~~~~~v~gV~~----~--------------g-~~i~ad~VV~-~~~~~  288 (419)
                      .+++.|.+.++   +. |++|++++++++++.+ +++|+||..    +              + ..+.|+.||+ +.++-
T Consensus       149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~  227 (549)
T PRK12834        149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG  227 (549)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence            57777776654   23 5999999999999984 899999974    1              1 3688998875 44553

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.06  E-value=0.2  Score=45.15  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=31.6

Q ss_pred             cceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~   38 (419)
                      ..+|+|||.|-.|..+|..|++.| .+++++|....
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            468999999999999999999999 69999998544

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=91.04  E-value=0.75  Score=45.63  Aligned_cols=43  Identities=19%  Similarity=0.250  Sum_probs=38.5

Q ss_pred             CcceEEEECCCchHHHHhhccccC-CCeEEEeccC--------CCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRN--------DYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~--------~~~GG~~~t   45 (419)
                      ++||+||||+|.+|..||..+++. |.+|+++|++        +.+||.|-.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln   53 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN   53 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence            579999999999999999999997 9999999984        579997753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.95  E-value=0.16  Score=52.75  Aligned_cols=33  Identities=33%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccc-cCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La-~~G~~V~vlE~~~   37 (419)
                      ..|.|||||..|...|..++ .+|++|+++|.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            46999999999999999999 8899999999865

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=90.90  E-value=0.19  Score=46.36  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||.|.-|...|..|+++|++|+++++++
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999874

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.89  E-value=0.17  Score=46.84  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=30.3

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++.|+|+|-.|...|++|+++|.+|+++=|.+.
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            689999999999999999999999999888764

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=90.88  E-value=0.18  Score=46.55  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=28.5

Q ss_pred             EEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            7 VIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         7 vvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      |.|||+|..|..+|..|+..|. +|+++|.++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999998886 999999985

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=90.80  E-value=0.75  Score=44.00  Aligned_cols=34  Identities=35%  Similarity=0.428  Sum_probs=32.2

Q ss_pred             eEEEECCCchHHHHhhccccCC-CeEEEeccCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY   39 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~   39 (419)
                      ||+|||||++||++|..|+++| ++|+|+||.+.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            7999999999999999999999 999999998754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=90.78  E-value=0.58  Score=44.72  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=31.9

Q ss_pred             cceEEEECCCchHHHHhhccccCC--CeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~   38 (419)
                      ..++||||||.+|+.+|..|.++-  .+|+++|++++
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~   39 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY   39 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence            458999999999999999999974  89999999876

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=90.76  E-value=0.2  Score=41.10  Aligned_cols=34  Identities=21%  Similarity=0.164  Sum_probs=27.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...++|+|-|.-|-.+|..|+..|.+|+|.|..|
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            3579999999999999999999999999999977

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.72  E-value=0.23  Score=46.64  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=30.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~   36 (419)
                      ..+|+|||+|-.|..+|..|+++|. +++++|..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999997 99999994

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=90.67  E-value=0.2  Score=53.07  Aligned_cols=38  Identities=18%  Similarity=0.070  Sum_probs=34.2

Q ss_pred             CCCcceEEEECCCchHHHH-hhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~a-A~~La~~G~~V~vlE~~~~   38 (419)
                      |++-.++.|||.|-+|+++ |..|.+.|++|++.|.+..
T Consensus         1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~   39 (809)
T PRK14573          1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG   39 (809)
T ss_pred             CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence            6666679999999999999 9999999999999998653

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.67  E-value=0.24  Score=45.32  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=30.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .+|+|||+|-+|.++|+.|++.|. +|+|++|+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            479999999999999999999996 899999974

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.61  E-value=0.22  Score=48.45  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=31.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||-|..|.++|..|.+.|++|++.|++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4799999999999999999999999999998654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.51  E-value=0.29  Score=46.85  Aligned_cols=35  Identities=17%  Similarity=0.090  Sum_probs=31.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...|+|||.|..|..+|..|...|.+|+|+|.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            45799999999999999999999999999998763

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.51  E-value=0.27  Score=48.18  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=31.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||-|-+|++++..|++.|++|++.|....
T Consensus         7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~   40 (438)
T PRK03806          7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT   40 (438)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence            4799999999999999999999999999998653

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=90.45  E-value=0.34  Score=35.31  Aligned_cols=32  Identities=38%  Similarity=0.453  Sum_probs=29.2

Q ss_pred             cceEEEECCCchHHHHhhccccC-CCeEEEecc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDR   35 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~   35 (419)
                      ..+++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45799999999999999999998 689999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.39  E-value=0.25  Score=46.29  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      ..+|+|||+|-.|..+|..|+++|. +++++|...
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4679999999999999999999997 899999854

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=90.38  E-value=0.9  Score=43.82  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~  288 (419)
                      .+-+-|++.+++.|++++.++.|+.+..++++.+.++..++.+++|+.||.+.+..
T Consensus        96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~  151 (396)
T COG0644          96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN  151 (396)
T ss_pred             HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence            34556888999999999999999999985334444444466899999999876543

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=90.36  E-value=0.8  Score=47.26  Aligned_cols=39  Identities=18%  Similarity=0.197  Sum_probs=36.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ++||||||||++||+||..++++|.+|+|+||.+..+|.
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~   43 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH   43 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence            589999999999999999999999999999999887764

>PRK07045 putative monooxygenase; Reviewed

Probab=90.35  E-value=1  Score=43.19  Aligned_cols=56  Identities=18%  Similarity=0.158  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHH-HcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~-~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .|-+.|.+.+. ..|++++++++|++|..++++.++.|+. +|+++.||.||.+-+..
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~  164 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR  164 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence            46677777665 4589999999999999754554566777 88899999999766544

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.33  E-value=0.2  Score=40.16  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=29.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~   36 (419)
                      +.+|+|||+|-.|...|..|++.|. +++++|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4689999999999999999999996 89999984

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=90.32  E-value=0.89  Score=43.48  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=33.4

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      ||+|||||++||++|..|+++|++|+|+||++.++
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~   35 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA   35 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence            79999999999999999999999999999998765

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.29  E-value=0.25  Score=45.24  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=31.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+++|||+|-.|..+|..|...|.+|++++++..
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5799999999999999999999999999999753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=90.28  E-value=0.21  Score=52.51  Aligned_cols=34  Identities=21%  Similarity=0.085  Sum_probs=31.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCe-EEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~   38 (419)
                      .+|||||||..|+-+|..|.+.|.+ |+++++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4799999999999999999999987 999998754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.19  E-value=0.32  Score=41.66  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             cceEEEECC-CchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..+++|+|| |-.|..+|..|++.|++|+++.|+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999996 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=90.17  E-value=0.19  Score=49.28  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=31.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||.|..|...|..|+++|++|+++++++.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999999754

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=90.17  E-value=0.26  Score=43.41  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=30.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCC---eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL---KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~---~V~vlE~~~   37 (419)
                      +.+++|+|+|-+|..+|..|.+.|.   +|.+++++.
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            3579999999999999999999996   599999984

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=89.97  E-value=0.24  Score=48.76  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=31.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|+|+|+|..|+.++..+...|.+|+++|.++.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35899999999999999999999999999998754

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=89.92  E-value=0.39  Score=42.80  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=32.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...++|+|+|.-+...|..++..|++|+|+|-++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            46899999999999999999999999999997654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK14694 putative mercuric reductase; Provisional

Probab=89.79  E-value=1.2  Score=44.04  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=37.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+|||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence            3599999999999999999999999999999996 6899775

>PTZ00117 malate dehydrogenase; Provisional

Probab=89.76  E-value=0.35  Score=45.09  Aligned_cols=36  Identities=14%  Similarity=0.120  Sum_probs=31.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~   38 (419)
                      +..+|.|||+|-.|.+.|..|+..| .++.++|.++.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            3568999999999999999999989 68999998753

>PRK06849 hypothetical protein; Provisional

Probab=89.68  E-value=0.38  Score=46.29  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=34.9

Q ss_pred             CCCcceEEEECCCc-hHHHHhhccccCCCeEEEeccCCCC
Q 014768            1 MDEEYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         1 m~~~~dvvIIGaGi-~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      |++...|+|+|++. .|+..|..|.++|++|++++.++..
T Consensus         1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~   40 (389)
T PRK06849          1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP   40 (389)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            67778999999998 6999999999999999999998643

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=89.64  E-value=1.1  Score=43.24  Aligned_cols=35  Identities=29%  Similarity=0.479  Sum_probs=33.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL   36 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence            47999999999999999999999999999999874

>PRK06834 hypothetical protein; Provisional

Probab=89.61  E-value=1.1  Score=44.62  Aligned_cols=36  Identities=28%  Similarity=0.474  Sum_probs=34.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .++||+|||||++||++|+.|+++|.+|+|+||.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            468999999999999999999999999999999875

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.55  E-value=0.32  Score=48.13  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=30.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..|.|+|.|-+|+++|..|.+.|.+|++.|++.
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            469999999999999999999999999999754

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=89.53  E-value=0.39  Score=38.81  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=29.8

Q ss_pred             eEEEECC-CchHHHHhhccccCC--CeEEEeccCCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G--~~V~vlE~~~~   38 (419)
                      +|.|||+ |-.|.+.|..|...|  .++.++|.++.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            7999999 999999999999887  47999999754

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.48  E-value=0.27  Score=48.36  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|+|+|+|-.|...|..|.+.|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            699999999999999999999999999999654

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=89.44  E-value=0.33  Score=44.03  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=32.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      +|.+||-|..|...|.+|.++|++|+|+++++.-
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k   35 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK   35 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence            6899999999999999999999999999998765

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=89.41  E-value=0.33  Score=40.78  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=29.0

Q ss_pred             eEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      +|+|||+|-.|...|..|++.|. +++++|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999997 599999853

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=89.33  E-value=0.38  Score=43.71  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..++|+|+|-.|.++|..|++.|++|+++.++.
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.32  E-value=0.31  Score=48.65  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..|.|+|.|.+|+++|..|.+.|++|++.|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            469999999999999999999999999999865

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=89.17  E-value=0.29  Score=45.14  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||.|..|...|..|+++|++|+++++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998753

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=88.94  E-value=0.41  Score=41.34  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=30.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~   36 (419)
                      +.+|+|||.|-.|..+|..|++.|. +++++|..
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            4689999999999999999999996 89999984

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=88.89  E-value=0.46  Score=45.84  Aligned_cols=35  Identities=20%  Similarity=0.064  Sum_probs=31.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...|+|+|.|..|..+|..|...|.+|+++|.++.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            35799999999999999999999999999998763

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=88.84  E-value=0.31  Score=45.24  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=29.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      .+|.|||+|..|.+.|..|++.|+  +|+++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            479999999999999999999995  899999864

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=88.83  E-value=0.42  Score=39.12  Aligned_cols=35  Identities=23%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             cceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~   38 (419)
                      ..+++|||+|..|...|..|++.| .+|++++++..
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~   54 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE   54 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence            357999999999999999999986 89999998643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06179 short chain dehydrogenase; Provisional

Probab=88.82  E-value=0.45  Score=43.00  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=31.2

Q ss_pred             CCCcceEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |++...++|+|| |-.|...|..|+++|++|+++.++.
T Consensus         1 m~~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~   38 (270)
T PRK06179          1 MSNSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNP   38 (270)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            666667889986 7778899999999999999998864

>PRK08163 salicylate hydroxylase; Provisional

Probab=88.79  E-value=1.4  Score=42.45  Aligned_cols=55  Identities=9%  Similarity=0.021  Sum_probs=42.7

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+.+.| ++++++++|+++..+ ++.+. |++ +|+++.||.||.+.+..
T Consensus       109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~-v~~~~g~~~~ad~vV~AdG~~  165 (396)
T PRK08163        109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVT-VFDQQGNRWTGDALIGCDGVK  165 (396)
T ss_pred             HHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceE-EEEcCCCEEecCEEEECCCcC
Confidence            347788888887765 899999999999873 55554 444 78889999999877654

>PLN02697 lycopene epsilon cyclase

Probab=88.73  E-value=1.4  Score=44.04  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      .+||+|||||++||++|..|+++|++|+|+|+.
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            589999999999999999999999999999985

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=88.70  E-value=0.3  Score=41.91  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=29.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      .-++.|+|+|+.|.+=|...|..||+|.++|-.
T Consensus         3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~   35 (313)
T KOG2305|consen    3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDIL   35 (313)
T ss_pred             ccceeEeecccccchHHHHHhccCceEEEeecc
Confidence            347999999999999999999999999998853

>PLN02256 arogenate dehydrogenase

Probab=88.58  E-value=0.47  Score=43.84  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|.|||.|..|-+.|..|.+.|++|+++++++
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            3579999999999999999999999999999875

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=88.56  E-value=0.51  Score=43.73  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=31.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      .+.+|.|||+|-.|.++|+.|+..|.  ++.++|.+.
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            35689999999999999999998884  799999876

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=88.54  E-value=1.2  Score=44.89  Aligned_cols=55  Identities=11%  Similarity=0.160  Sum_probs=41.6

Q ss_pred             cHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .+.+.|.+.+++. |++++ ...|+++..++++++.+|.+ +|..+.||.||.+++.+
T Consensus        97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf  153 (617)
T TIGR00136        97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF  153 (617)
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence            4666777777777 55665 55788887633678999998 78899999999877665

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=88.37  E-value=0.37  Score=44.57  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||.|..|...|..|+++|++|+++++++
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~   33 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP   33 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence            69999999999999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	419
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-145
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		1e-144
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-144
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-126
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-126
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		1e-114
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		7e-27
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		8e-27

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  509 bits (1312), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 318/403 (78%), Gaps = 3/403 (0%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358
Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 401

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  509 bits (1310), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 318/403 (78%), Gaps = 3/403 (0%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 300
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 301 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 360
Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S
Sbjct: 361 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCS 403

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  508 bits (1307), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 317/403 (78%), Gaps = 3/403 (0%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 300
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 301 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 360
Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           T  P+ E++P + LL P+D+ F  I D YEP+++ S    F S
Sbjct: 361 TTDPEKEVEPALGLLEPIDQKFVAISDLYEPIDDGSESQVFCS 403

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/408 (52%), Positives = 302/408 (74%), Gaps = 7/408 (1%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N  
Sbjct: 6   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 65
Query: 59  --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 66  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 125
Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 126 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 185
Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 186 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 244
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKV 295
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K +  
Sbjct: 245 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 304
Query: 296 G-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFV 354
           G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +
Sbjct: 305 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAII 364
Query: 355 STEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           ST  ETD P  EL+P   LLGP++E F  I + +EP  + S DN ++S
Sbjct: 365 STIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLS 412

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/408 (52%), Positives = 302/408 (74%), Gaps = 7/408 (1%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N  
Sbjct: 8   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 67
Query: 59  --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 68  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 127
Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 128 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187
Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 246
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKV 295
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K +  
Sbjct: 247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 306
Query: 296 G-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFV 354
           G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +
Sbjct: 307 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAII 366
Query: 355 STEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           ST  ETD P  EL+P   LLGP++E F  I + +EP  + S DN ++S
Sbjct: 367 STIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLS 414

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/414 (49%), Positives = 284/414 (68%), Gaps = 14/414 (3%)
Query: 3   EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP 62
           E YDVI+LGTGLKECILSGLLS  G K+L +DRN YYGGE++SLNL  L+  F+  E  P
Sbjct: 19  EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIP 78
Query: 63  AHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGK-------- 114
           +  G +R +NVD+IPKFI+  G LV++L  T VT YL +  V+GS+VY   K        
Sbjct: 79  SKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEK 138
Query: 115 -VHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAK 173
            +HKVPATDMEAL SPL+ + EK R + F+ YV ++D N   T + +D  ++T  E+   
Sbjct: 139 FIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKH 198
Query: 174 YGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE 233
           + L   TIDF+GHA+AL+ +D YL +PA  T++R+KLY +SI+ F G SP+IYPLYGLG 
Sbjct: 199 FNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGLGG 257
Query: 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSY---LP 289
           +P+ F+R+ A+ GGT+MLNK      FD++ KV G+ +S+GE A C KV+CDPSY   L 
Sbjct: 258 IPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLK 317
Query: 290 NKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGK 349
           NK++K+G+V R I I+S+PIP TN ++S Q+I+PQ QL R+SD+Y+   S+ H V  KGK
Sbjct: 318 NKIKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTLKGK 377
Query: 350 FIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST 403
           +IA VS   ET++P  E++  ++LLG ++E F  I D Y   ++   DN F+++
Sbjct: 378 YIAIVSATVETNNPIKEIEKPLELLGTIEEKFVKISDLYVSTSKKPADNIFVTS 431

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 149/295 (50%), Gaps = 18/295 (6%)
Query: 69  RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
           R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S
Sbjct: 222 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186
             + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
           ++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAMTSETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP-NKVRKVG--RVARA 301
           G Y L +  +C V   E  K   V  + G+    K  + + SYL  N   +V   +++RA
Sbjct: 393 GIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRA 452
Query: 302 IAIMSHPIPNTNDSHSVQVI-LPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVS 355
           + I    +  T+    V ++ +P ++ G  +   +  CS S     KG ++  ++
Sbjct: 453 VLITDGSVLKTDADQQVSILTVPAEEPGSFAVRVIELCS-STMTCMKGTYLVHLT 506

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 149/295 (50%), Gaps = 18/295 (6%)
Query: 69  RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
           R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S
Sbjct: 222 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186
             + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
           ++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAMTSETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP-NKVRKVG--RVARA 301
           G Y L +  +C V   E  K   V  + G+    K  + + SYL  N   +V   +++RA
Sbjct: 393 GIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRA 452
Query: 302 IAIMSHPIPNTNDSHSVQVI-LPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVS 355
           + I    +  T+    V ++ +P ++ G  +   +  CS S     KG ++  ++
Sbjct: 453 VLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCS-STMTCMKGTYLVHLT 506

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	419
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	1e-166
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	1e-161
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	1e-153
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	1e-118
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	6e-27
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	1e-09
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	1e-07
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-07
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	4e-07
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-06
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	9e-06
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-04

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  474 bits (1221), Expect = e-166
 Identities = 213/408 (52%), Positives = 301/408 (73%), Gaps = 7/408 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFR---- 56
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+    
Sbjct: 8   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 67

Query: 57  GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 68  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 127

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 128 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187

Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 246

Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKV 295
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K +  
Sbjct: 247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 306

Query: 296 G-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFV 354
           G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +
Sbjct: 307 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAII 366

Query: 355 STEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIS 402
           ST  ETD P  EL+P   LLGP++E F  I + +EP  + S DN ++S
Sbjct: 367 STIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLS 414

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  458 bits (1180), Expect = e-161
 Identities = 245/423 (57%), Positives = 323/423 (76%), Gaps = 6/423 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 300

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAE 359
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  E
Sbjct: 301 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 360

Query: 360 TDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTVTMMPQH---TLSQLS 416
           T  P+ E++P + LL P+D+ F  I D YEP+++ S    F S       H   T + + 
Sbjct: 361 TTDPEKEVEPALGLLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 420

Query: 417 RMY 419
            +Y
Sbjct: 421 DIY 423

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  440 bits (1132), Expect = e-153
 Identities = 202/416 (48%), Positives = 282/416 (67%), Gaps = 14/416 (3%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             E YDVI+LGTGLKECILSGLLS  G K+L +DRN YYGGE++SLNL  L+  F+  E 
Sbjct: 17  QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKEN 76

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGK------ 114
            P+  G +R +NVD+IPKFI+  G LV++L  T VT YL +  V+GS+VY   K      
Sbjct: 77  IPSKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTS 136

Query: 115 ---VHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELI 171
              +HKVPATDMEAL SPL+ + EK R + F+ YV ++D N   T + +D  ++T  E+ 
Sbjct: 137 EKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIY 196

Query: 172 AKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL 231
             + L   TIDF+GHA+AL+ +D YL +PA  T++R+KLY +SI+ F G SP+IYPLYGL
Sbjct: 197 KHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGL 255

Query: 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP- 289
           G +P+ F+R+ A+ GGT+MLNK      FD++ KV G+ S  GE A C KV+CDPSY+  
Sbjct: 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMH 315

Query: 290 --NKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPK 347
             NK++K+G+V R I I+S+PIP TN ++S Q+I+PQ QL R+SD+Y+   S+ H V  K
Sbjct: 316 LKNKIKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTLK 375

Query: 348 GKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST 403
           GK+IA VS   ET++P  E++  ++LLG ++E F  I D Y   ++   DN F+++
Sbjct: 376 GKYIAIVSATVETNNPIKEIEKPLELLGTIEEKFVKISDLYVSTSKKPADNIFVTS 431

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  357 bits (917), Expect = e-118
 Identities = 78/422 (18%), Positives = 158/422 (37%), Gaps = 45/422 (10%)

Query: 27  GLKVLHMDRNDYYGGESSSLNLIQL--W---------KRFRGNEQPPAHLGSSRDYNVDM 75
             +V   +         +  +  +                +        +   R +N+D+
Sbjct: 169 SPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDL 228

Query: 76  IPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFE 135
           + K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + E
Sbjct: 229 VSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVE 288

Query: 136 KRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDR 195
           KR   KF  +  +Y+   P  +   +    T  E +    L  N   F+ H++A+  +  
Sbjct: 289 KRMLMKFLTFCVEYE-EHPDEYRAYE--GTTFSEYLKTQKLTPNLQYFVLHSIAMTSETT 345

Query: 196 YLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPE 255
                 +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L    
Sbjct: 346 S---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSV 401

Query: 256 CKVEFDEEGKVVG--VTSEGETAKCKKVVCDPSYLPNKVRK---VGRVARAIAIMSHPIP 310
             +  D+E +     +   G+    K  + + SYL           +++RA+ I    + 
Sbjct: 402 QCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVL 461

Query: 311 NTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPG 370
            T+    V ++    +      + +     S     KG ++  ++  +     +   +  
Sbjct: 462 RTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTCMSSKTAREDLERVV 521

Query: 371 IDLLGPVDEIFYDIYDRYEP-------------------VNEPSLDNCFISTVTMMPQHT 411
             L  P  EI  +     +P                          N ++ +    P   
Sbjct: 522 QKLFTPYTEIEAENEQVEKPRLLWALYFNMRDSSDISRDCYNDLPSNVYVCS---GPDSG 578

Query: 412 LS 413
           L 
Sbjct: 579 LG 580

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  112 bits (280), Expect = 6e-27
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           +  ++DVIV+GTGL E I++   S  G +VLH+D   YYGG  +S +   L    +  ++
Sbjct: 5   LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQE 64

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYL----YFKAVDGSFVYNKGKVH 116
               +  +  +   ++      N   + +       +++    Y        V   G + 
Sbjct: 65  NNDVVTENSMWQEQILE-----NEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQ 119

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160
           K  A+   A  +      E          +       P      
Sbjct: 120 KNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQC 163

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 37/291 (12%)

Query: 1   MDEEYDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRF 55
           M  + DV+V+G G+     SG+     L   GL V+ ++  D  GG            R 
Sbjct: 1   MSNKCDVVVVGGGI-----SGMAAAKLLHDSGLNVVVLEARDRVGG------------RT 43

Query: 56  RGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKV 115
                      + +   VD+   ++      +  L      +      V+    + KGK 
Sbjct: 44  YTLR-------NQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKS 96

Query: 116 HKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTH-EGMDLTRVTTRELIAKY 174
           +         + +P+  +      R      ++   + P       +   +T +EL+ K 
Sbjct: 97  YPFRG-PFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKL 155

Query: 175 GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA--ESIARFQGGSPYIYPLYGLG 232
              ++        + L          AL  +  +K       I     G      + G G
Sbjct: 156 CWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSG 215

Query: 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
           ++ +       + G    L +P   ++   E  +V  T   E  + K V+ 
Sbjct: 216 QVSERIM---DLLGDRVKLERPVIYIDQTRENVLV-ETLNHEMYEAKYVIS 262

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 55/398 (13%), Positives = 114/398 (28%), Gaps = 95/398 (23%)

Query: 6   DVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFR---- 56
             +V+G GL      GL     L+ +G +++ ++++   GG  ++L      K F+    
Sbjct: 2   RAVVVGAGL-----GGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPY----KGFQLSTG 52

Query: 57  -------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFV 109
                  G + P AHL       V+++                    K          + 
Sbjct: 53  ALHMIPHGEDGPLAHLLRILGAKVEIVNSN----------------PKGKIL------W- 89

Query: 110 YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE 169
             +GK+     +         + + EK +A K    ++            +    +   E
Sbjct: 90  --EGKIFHYRESW------KFLSVKEKAKALKLLAEIRMNK---------LPKEEIPADE 132

Query: 170 LIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY 229
            I +   ++  +  +  + A        +    D    ++L  E  A  + G P      
Sbjct: 133 WIKEKIGENEFLLSVLESFAGW----ADSVSLSDL-TALELAKEIRAALRWGGPG-LIRG 186

Query: 230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC------ 283
           G   +     R+     G  +  K   ++   EE KV   T + E       +       
Sbjct: 187 GCKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--YTRDNEEYSFDVAISNVGVRE 243

Query: 284 -----DPSYLPNKVRKVGRVARAIAIMSHPI----PNTNDSHSVQVILPQKQLGRRSDMY 334
                   Y      K  +V               P      +  V  P   +   ++  
Sbjct: 244 TVKLIGRDYFDRDYLK--QVDSIEPSEGIKFNLAVPGEPRIGNTIVFTPGLMINGFNEPS 301

Query: 335 LFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGID 372
               S     A +G  +       +  + +  ++ G +
Sbjct: 302 ALDKSL----AREGYTLIMAHMALKNGNVKKAIEKGWE 335

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 54/428 (12%), Positives = 112/428 (26%), Gaps = 112/428 (26%)

Query: 6   DVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             +V+G GL      GL     LS  G +V   +R    GG  ++               
Sbjct: 2   KTVVIGAGL-----GGLLSAARLSKAGHEVEVFERLPITGGRFTN------LSY------ 44

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
                   + + +          GA   +          + K V+ S          +  
Sbjct: 45  --------KGFQLSS--------GAFHMLPNGPGGPLACFLKEVEASV--------NIVR 80

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           ++M  ++ PL         +    YV+ + +      +   L     R  IA   +    
Sbjct: 81  SEMTTVRVPL--------KKGNPDYVKGFKDISFN--DFPSLLSYKDRMKIALLIVSTRK 130

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAES-IARFQGGSPYI-------------- 225
               G +L        +++  L         +    A                       
Sbjct: 131 NRPSGSSLQAW-IKSQVSDEWL----IKFADSFCGWALSLKSDEVPVEEVFEIIENMYRF 185

Query: 226 ----YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKV 281
                P  G   +  A   + +  GG     +   K+   E GK  G+ ++        V
Sbjct: 186 GGTGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIADDRIHDADLV 244

Query: 282 VCDPSY------LPNKVRKVGRVARAIAIMSHPIPNTNDSHS---VQVILPQKQL----- 327
           + +  +          + K    A    + +          +   + +   +  +     
Sbjct: 245 ISNLGHAATAVLCSEALSKEADAAYFKMVGTLQ------PSAGIKICLAADEPLVGHTGV 298

Query: 328 --GRRSDMYLFCCSYSH---NVAPKGKFIAFVST---EAETDHPQTELKPGIDLLGPVDE 379
                +         +     +AP GK +             + ++E++ G++ L    E
Sbjct: 299 LLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDL---KE 355

Query: 380 IFYDIYDR 387
           IF      
Sbjct: 356 IFPGKRYE 363

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 38/284 (13%), Positives = 78/284 (27%), Gaps = 37/284 (13%)

Query: 5   YDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE 59
           YD IV+G G      SGL     L+  G KVL ++  +  GG + S          R   
Sbjct: 2   YDAIVVGGG-----FSGLKAARDLTNAGKKVLLLEGGERLGGRAYSR-------ESRNVP 49

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
                +G +  +             A +            +             +   +P
Sbjct: 50  GLRVEIGGAYLHRKHHPR-----LAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIP 104

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
            ++  A+         +             D      ++ ++   +   E + K  L   
Sbjct: 105 GSEAVAV---------EAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKLDLPPV 155

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
           +  F+                AL  ++ +  +  SI         ++   G  +L  A +
Sbjct: 156 SRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFS-NGSADLVDAMS 214

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
           +          L      ++   +  V     +G   +   V+ 
Sbjct: 215 QE----IPEIRLQTVVTGIDQSGDV-VNVTVKDGHAFQAHSVIV 253

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 42/290 (14%), Positives = 93/290 (32%), Gaps = 40/290 (13%)

Query: 3   EEYDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG 57
            + DV ++G G      SGL     L   GL V  ++  D  GG              R 
Sbjct: 4   LQRDVAIVGAGP-----SGLAAATALRKAGLSVAVIEARDRVGG--------------R- 43

Query: 58  NEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHT-DVTKYLYFKAVDGSFVYNKGKVH 116
                    +     +++  +++  +   +  L+    +  +  ++  +  ++ + G+  
Sbjct: 44  -----TWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREGESVYISSAGERT 98

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM-DLTRVTTRELIAKYG 175
           +         ++    +   R   +           +P  H    DL  V+ ++ +    
Sbjct: 99  RYTGDSFPTNETTKKEMD--RLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQS 156

Query: 176 LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARF--QGGSPYIYPLYGLGE 233
            D    D IG  +A     +  +  +      M   A S +    +        + G+ +
Sbjct: 157 DDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQ 216

Query: 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
           +    A      G    LN P   V+++E G  V +       +  +V+ 
Sbjct: 217 VSIRMA---EALGDDVFLNAPVRTVKWNESGATV-LADGDIRVEASRVIL 262

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 43/314 (13%), Positives = 84/314 (26%), Gaps = 73/314 (23%)

Query: 3   EEYDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG 57
              +V V+G G+     SGL     L   G   + ++ +   GG   +  L         
Sbjct: 15  TGMNVAVVGGGI-----SGLAVAHHLRSRGTDAVLLESSARLGGAVGTHAL--------- 60

Query: 58  NEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIH----TDVTKYLYFKAVDGSFVYNKG 113
                        Y V+  P   +      R L          +     A    +VY +G
Sbjct: 61  -----------AGYLVEQGPNSFLDREPATRALAAALNLEGRIRAAD-PAAKRRYVYTRG 108

Query: 114 KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAK 173
           ++  VPA+    L S ++ +  + R                +  EG+D    +      +
Sbjct: 109 RLRSVPASPPAFLASDILPLGARLRVAGELF--------SRRAPEGVD---ESLAAFGRR 157

Query: 174 -YG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR------------- 217
             G       +D +   +     ++         + +M+    S+               
Sbjct: 158 HLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAA 217

Query: 218 ------FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS 271
                  +          GL  L  A A      G    +      +  ++ G  + +  
Sbjct: 218 LPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEE 274

Query: 272 --EGETAKCKKVVC 283
                     +VV 
Sbjct: 275 HGRRAELSVAQVVL 288

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 49/407 (12%), Positives = 107/407 (26%), Gaps = 72/407 (17%)

Query: 2   DEEYDVIVLGTGLKECILSGL-----------LSVDGLKVLHMDRNDYYGGESSSLNLIQ 50
           D +  V+++G G+     +GL                L++  ++ +   GG         
Sbjct: 3   DGKKHVVIIGGGI-----TGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG--------- 48

Query: 51  LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHT-DVTKYLYFKAVDGSFV 109
              + +  ++          Y ++  P   +        L+    +   L   A   S+V
Sbjct: 49  ---KIQTVKKD--------GYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYV 97

Query: 110 YNKGKVHKVPA-------TDMEAL-KSPLMGIFEKRRARKFFIYVQDYDENDPKTHE--- 158
                +H +P        T +     + L  +  K RA   FI      ++D    E   
Sbjct: 98  LVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFR 157

Query: 159 ---GMDLTRVTTRELIAKYGLDDNTIDFIGHAL----ALHRDDRYLNEPALDTVKRMKLY 211
              G ++       L++     D     +           +  R L      T  +    
Sbjct: 158 RRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQ 217

Query: 212 AESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS 271
             +  +      +     GL  L +   +   +            K+        +    
Sbjct: 218 QLTAKK---QGQFQTLSTGLQTLVEEIEK--QLKLTKVYKGTKVTKLSHSGSCYSL-ELD 271

Query: 272 EGETAKCKKVVC-----------DPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQV 320
            G T     V+                  + ++ +   + A   +  P  +    H    
Sbjct: 272 NGVTLDADSVIVTAPHKAAAGMLSELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTG 331

Query: 321 ILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTEL 367
            +  +          +      + AP+GK +         D    +L
Sbjct: 332 FVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDL 378

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	419
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.95
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.94
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.89
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.89
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.89
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.89
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.88
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.86
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.86
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.86
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.85
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.82
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.82
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.79
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.78
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.75
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.74
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.74
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.74
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.7
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.7
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.69
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.62
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.51
3dme_A	369	Conserved exported protein; structural genomics, P	99.5
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.47
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.44
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.44
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.44
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.4
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.39
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.39
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.38
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.35
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.33
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.32
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.31
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.31
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.31
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.31
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.3
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.26
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.26
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.23
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.22
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.2
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.2
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.19
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.19
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.18
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.16
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.13
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.03
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.01
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.01
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.97
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.95
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.9
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.88
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.83
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.82
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.8
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.78
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.74
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.74
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.72
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.72
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.71
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.69
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.64
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.64
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.63
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.63
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.6
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.59
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.58
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.58
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.55
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.54
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.54
4dna_A	463	Probable glutathione reductase; structural genomic	98.54
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.53
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.53
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.52
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.51
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.5
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.5
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.5
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.49
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.49
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.49
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.48
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.47
3atr_A	453	Conserved archaeal protein; saturating double bond	98.47
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.47
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.47
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.47
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.46
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.46
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.45
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.44
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.44
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.42
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.42
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.41
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.4
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.4
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.4
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.4
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.39
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.39
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.39
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.37
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.37
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.37
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.36
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.36
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.36
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.36
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.35
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.35
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.35
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.34
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.34
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.34
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.34
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.34
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.33
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.33
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.33
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.32
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.32
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.32
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.31
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.31
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.31
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.31
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.3
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.3
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.3
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.29
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.28
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.28
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.27
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.26
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.26
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.26
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.26
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.26
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.22
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.22
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.21
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.2
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.2
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.19
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.19
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.19
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.19
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.17
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.17
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.16
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.16
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.16
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.15
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.14
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.14
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.14
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.14
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.13
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.13
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.11
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.11
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.1
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.08
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.08
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.06
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.05
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.03
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.03
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.99
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.99
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.97
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.92
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.92
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.91
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.88
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.88
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.87
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.85
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.83
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.81
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.79
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.78
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.78
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.77
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.74
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.65
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.65
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.55
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.48
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.47
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.41
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.99
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.35
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.3
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.27
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.27
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.24
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.19
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.13
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.07
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.06
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.99
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.98
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	95.94
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.93
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.92
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.91
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.85
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	95.82
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.82
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.8
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.71
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.66
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.59
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.59
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.52
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.42
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.39
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.38
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.29
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.27
2cul_A	232	Glucose-inhibited division protein A-related PROT	95.23
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	95.22
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.18
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.14
1ojt_A	482	Surface protein; redox-active center, glycolysis,	95.14
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.14
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.12
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.1
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.1
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.06
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.05
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.03
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.0
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.99
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.99
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	94.97
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.97
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	94.95
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.95
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.93
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.92
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.91
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	94.87
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	94.86
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	94.79
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.78
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	94.77
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.77
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.75
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	94.75
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	94.74
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.73
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	94.73
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.72
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.72
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.69
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	94.68
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.65
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	94.64
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.63
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.63
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.6
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	94.6
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	94.6
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	94.58
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.57
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.55
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.54
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	94.52
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.52
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.51
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.5
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.48
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.47
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.46
4dna_A	463	Probable glutathione reductase; structural genomic	94.46
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	94.43
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.4
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.38
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.38
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.34
3atr_A	453	Conserved archaeal protein; saturating double bond	94.32
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.3
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.29
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.27
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.24
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	94.22
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	94.21
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	94.21
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.17
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.17
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.16
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.12
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.12
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.12
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.11
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	94.09
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.08
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.06
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	94.01
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	93.99
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.89
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.87
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	93.85
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.85
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.75
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.73
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	93.73
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.72
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.71
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.69
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	93.69
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.66
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	93.66
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.64
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	93.59
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	93.57
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.56
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	93.56
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.56
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.52
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.52
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.51
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.49
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	93.46
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	93.45
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.44
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.4
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.38
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	93.36
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.26
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.2
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	93.2
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	93.14
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	93.13
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.07
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.05
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.05
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	93.04
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.0
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.99
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.98
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.98
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.98
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.91
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.88
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	92.88
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.83
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	92.82
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.8
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	92.77
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	92.74
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.7
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	92.67
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.65
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	92.64
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.63
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.59
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.58
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	92.57
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.57
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	92.57
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	92.55
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.53
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.49
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	92.46
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.4
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.4
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	92.38
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.34
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	92.32
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	92.3
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	92.25
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.25
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.23
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.19
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	92.1
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	92.07
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	92.0
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	91.99
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	91.98
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.96
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.9
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.9
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.89
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	91.87
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.81
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	91.73
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	91.73
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	91.69
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	91.64
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.63
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	91.63
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	91.58
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.55
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	91.54
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	91.53
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.51
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	91.45
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	91.44
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	91.41
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	91.38
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.36
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	91.35
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	91.28
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	91.24
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.23
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	91.19
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.19
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	91.19
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	91.16
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.14
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	91.11
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	91.06
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	90.99
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	90.99
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	90.96
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	90.86
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.83
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	90.81
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	90.81
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	90.78
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	90.78
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.68
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	90.58
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.56
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	90.53
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	90.42
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	90.39
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	90.32
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.21
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.17
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	90.1
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	90.1
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	90.09
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	90.08
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	90.08
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	90.05
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	90.03
1lnq_A	336	MTHK channels, potassium channel related protein;	90.01
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	89.99
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	89.94
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	89.88
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.85
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	89.83
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	89.81
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	89.31
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	89.75
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	89.75
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.72
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	89.71
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	89.69
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	89.64
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	89.53
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	89.52
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	89.52
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	89.43
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	89.39
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	89.38
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	89.37
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	89.26
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	89.22
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	89.14
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	89.01
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	88.97
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	88.94
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	88.93
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	88.82
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	88.78
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	88.78
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	88.77
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	88.74
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	88.72
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	88.71
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	88.7
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	88.68
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	88.66
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	88.65

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3.7e-57  Score=435.39  Aligned_cols=416  Identities=49%  Similarity=0.866  Sum_probs=360.3

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~   80 (419)
                      |++++||||||+|++|+++|+.|+++|++|+|+||++++||++++++.++++.+|......+..+|.+++|++|++|+++
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l   96 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFI   96 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEe
Confidence            66789999999999999999999999999999999999999999999998889998765566778899999999999999


Q ss_pred             ecCchhhHHHHhcCCcceeeEEEecceeEEe---------CCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhccc
Q 014768           81 IANGALVRVLIHTDVTKYLYFKAVDGSFVYN---------KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE  151 (419)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (419)
                      +..+.++++|.++++.+|++|..+++.|.+.         +|+.+++|.+..+.+...++++.+|+.+++|+.++..+.+
T Consensus        97 ~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kFL~~l~~~~~  176 (475)
T 3p1w_A           97 LVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDA  176 (475)
T ss_dssp             ETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHHHHHHHHCCT
T ss_pred             ecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999998764         5778999988899999999999999999999999988765


Q ss_pred             CCCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCc
Q 014768          152 NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL  231 (419)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~  231 (419)
                      ..+..++.+++...++.+|++++++++.+++++...++++..+++...++..++.++..|+.++..| |.+++.||+||+
T Consensus       177 ~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl~~y-g~s~~~yp~gG~  255 (475)
T 3p1w_A          177 NKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGL  255 (475)
T ss_dssp             TCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCT
T ss_pred             ccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHhhc-CCCceEEECCCH
Confidence            4444444445567899999999999999999887777777665565667788888889999888999 888999999999


Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC---CccccccCeeEEEEEEecC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL---PNKVRKVGRVARAIAIMSH  307 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~---~~~~~~~~~~~~~~~~~~~  307 (419)
                      +.|+++|++.++++|++|+++++|++|..++++++++|++ +|++++||+||++++++   |..+.....+.|.++++++
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~~~~p~~~~~~~~v~R~i~I~~~  335 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLKNKIKKIGQVIRCICILSN  335 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGCTTSTTSEEEEEEEEEEEEEESS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCccccCcccccccceEEEEEEEEec
Confidence            9999999999999999999999999999844789999998 77899999999999998   7654434568899999999


Q ss_pred             CCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccc
Q 014768          308 PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDR  387 (419)
Q Consensus       308 ~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (419)
                      |+.+.++..+.++++|+.++++.+.+|+++.|.....||+|+++++++|.+++++++++|+++++...++.+.+..+-+.
T Consensus       336 pi~~~~~~~~~~i~~P~~~~~~~~~iy~~~~s~~~~~cp~G~~i~~~st~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~  415 (475)
T 3p1w_A          336 PIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTLKGKYIAIVSATVETNNPIKEIEKPLELLGTIEEKFVKISDL  415 (475)
T ss_dssp             CCTTSTTCSSEEEEECGGGGTSSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHHTTCSEEEEEEEEEEE
T ss_pred             cCcccCCCceEEEEeCCcccCCCCCEEEEEECCCcCcCCCCcEEEEEEeecCCCCHHHHHHHHHHHhcchhheeccchhe
Confidence            99776655677888999888878889999999888999999999999999888899999999998776777777755565


Q ss_pred             cccCCCCCCCcEEEecCCCCCCchHHHhhh
Q 014768          388 YEPVNEPSLDNCFISTVTMMPQHTLSQLSR  417 (419)
Q Consensus       388 ~~~~~~~~~~~i~~~~~~tp~~d~~~~~~~  417 (419)
                      ++-.-.+..++|.....++++.|||+....
T Consensus       416 ~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~  445 (475)
T 3p1w_A          416 YVSTSKKPADNIFVTSSYDATSHFETATND  445 (475)
T ss_dssp             EEESCSSCTTCEEECCCCCSCSBSHHHHHH
T ss_pred             eeecccCCCCCEEEeCCCCCccchHHHHHH
Confidence            554335778999999999999999987653

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=1e-46  Score=367.47  Aligned_cols=414  Identities=52%  Similarity=0.928  Sum_probs=320.2

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCC----CCCCCCCCcceEEccC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ----PPAHLGSSRDYNVDMI   76 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~----~~~~~g~~~~~~~d~g   76 (419)
                      |+.++||||||||++||+||++|+++|++|+|+||++++||++++++.++....|.....    .+..++....|.+|++
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~   87 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   87 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccc
Confidence            446799999999999999999999999999999999999999999987652222221100    0000223357889999


Q ss_pred             cceeecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCc
Q 014768           77 PKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT  156 (419)
Q Consensus        77 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (419)
                      |+++...+.+.+++.+.++.+++++..+++.|.+.+|+.+.+|.+..+.+...+.++++++.+++|+..+..+....|..
T Consensus        88 P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~  167 (453)
T 2bcg_G           88 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLST  167 (453)
T ss_dssp             CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGG
T ss_pred             cceeecCcHHHHHHHhcCCccceEEEEccceeEEeCCeEEECCCChHHHHhhhccchhhHHHHHHHHHHHHHhccCCchh
Confidence            99999999899999999999899999998888888999999997658888888888888888889988887765332222


Q ss_pred             cccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHH
Q 014768          157 HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ  236 (419)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~  236 (419)
                      +..++....++.+++++++.++.+++++...+.+...+.+...|....+.++..++.++..+ +..++.+|+||++++++
T Consensus       168 ~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~~~~-~~~~~~~p~gG~~~l~~  246 (453)
T 2bcg_G          168 HQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ  246 (453)
T ss_dssp             STTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCTTHHHH
T ss_pred             hhccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHhh-cCCceEeeCCCHHHHHH
Confidence            22223457899999999999999988876555544344454456666665666666666666 55678899999999999


Q ss_pred             HHHHHHHHcCcEEEcCCccceEEEcC--CCcEEEEEeCCeEEEcCEEEeCCCCCCccccccC-eeEEEEEEecCCCCCCC
Q 014768          237 AFARLSAVYGGTYMLNKPECKVEFDE--EGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNTN  313 (419)
Q Consensus       237 al~~~~~~~G~~i~~~~~V~~I~~~~--~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~  313 (419)
                      +|++.++++|++|+++++|++|.. +  ++++++|+++|+++.||+||+++++++..+.... ...+.+.+++++++..+
T Consensus       247 al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~~~V~~~g~~~~ad~VV~a~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~  325 (453)
T 2bcg_G          247 GFARLSAIYGGTYMLDTPIDEVLY-KKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTS  325 (453)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEE-ETTTTEEEEEEETTEEEECSCEEECGGGCGGGEEEEEEEEEEEEEEESSCCTTST
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEE-ECCCCeEEEEEECCeEEECCEEEECCCccchhhcccCCcceeEEEEEccccCCCC
Confidence            999999999999999999999998 5  7888899889999999999999998875543333 35566667777776443


Q ss_pred             CCCeEEEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCC
Q 014768          314 DSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNE  393 (419)
Q Consensus       314 ~~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (419)
                      ...+++++++.+++++++++|++++|...++||+|++++++++++++.+++++|++.++......+.+..+.+..+....
T Consensus       326 ~~~~~~ii~~~~~~~~~~~~~v~~~s~~d~~aP~G~~~~~v~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  405 (453)
T 2bcg_G          326 NADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPRED  405 (453)
T ss_dssp             TCSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHGGGCSCSEEEEEEEEEEEESSC
T ss_pred             CCccEEEEeCccccCCCCCEEEEEeCCCCCCCCCCcEEEEEEEecCCCCHHHHHHHHHHHhhhHHHhhccchheeeecCC
Confidence            33455667887788888999999999767889999999999999988888888888777655444445545555554334


Q ss_pred             CCCCcEEEecCCCCCCchHHHhh
Q 014768          394 PSLDNCFISTVTMMPQHTLSQLS  416 (419)
Q Consensus       394 ~~~~~i~~~~~~tp~~d~~~~~~  416 (419)
                      ...++|.....++.+.+|+....
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~  428 (453)
T 2bcg_G          406 GSKDNIYLSRSYDASSHFESMTD  428 (453)
T ss_dssp             STTTSEEECCCCCSCSBSHHHHH
T ss_pred             CCCCCEEECCCCCccccHHHHHH
Confidence            56789999888888888887654

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=2.3e-46  Score=362.71  Aligned_cols=414  Identities=59%  Similarity=1.017  Sum_probs=319.1

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccc-hHHHHHhhcCCCCCCCCCCCCcceEEccCcce
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~   79 (419)
                      |+.++||+|||||++||++|++|+++|++|+|+|+++.+||++++++ ..+..+.|.........++...+|.+|+||++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~   82 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF   82 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence            77789999999999999999999999999999999999999999998 43222122211112233455568999999999


Q ss_pred             eecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768           80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (419)
Q Consensus        80 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (419)
                      +...+.+.+++.+.++.+++++...++.|.+.+|+.+.+|.+..+.+...+.++++++.+++|+..+..+....+...+.
T Consensus        83 l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  162 (433)
T 1d5t_A           83 LMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG  162 (433)
T ss_dssp             EETTSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHHCCTTCGGGGTT
T ss_pred             eeccchHHHHHHHcCCccceEEEEeCceEEeeCCEEEECCCCHHHHhhCcccChhhHHHHHHHHHHHHhhcccCchhccc
Confidence            99988888888889999999999988888888999999997655788888888888888889988887765333322222


Q ss_pred             ccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHH
Q 014768          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (419)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~  239 (419)
                      .+....++.+++++++.++.+++++...+.++....+...|....+..+..+..++..+ |..++++|+||++.++++|+
T Consensus       163 ~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~-g~~~~~~p~gG~~~l~~~l~  241 (433)
T 1d5t_A          163 VDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA  241 (433)
T ss_dssp             CCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSS-SCCSEEEETTCTTHHHHHHH
T ss_pred             cccccCCHHHHHHHcCCCHHHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhc-CCCcEEEeCcCHHHHHHHHH
Confidence            23467899999999999999988876655555444444556555555555555555555 56678999999999999999


Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccCeeEEEEEEecCCCCCCCCCCeEE
Q 014768          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ  319 (419)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  319 (419)
                      +.++++|++|+++++|++|.. +++++++|+++|+++.||+||+++++++..+.......+.+.+++++++..+....+.
T Consensus       242 ~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~~~g~~~~ad~VV~a~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~  320 (433)
T 1d5t_A          242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQ  320 (433)
T ss_dssp             HHHHHHTCCCBCSCCCCEEEE-ETTEEEEEEETTEEEECSEEEECGGGCGGGEEEEEEEEEEEEEESSCCTTSTTCSSEE
T ss_pred             HHHHHcCCEEECCCEEEEEEE-eCCEEEEEEECCeEEECCEEEECCCCCcccccccCcceeEEEEEcCcccccCCCceEE
Confidence            999999999999999999998 4888988888999999999999998876544322234455666677776443334567


Q ss_pred             EEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCCCCCCcE
Q 014768          320 VILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNC  399 (419)
Q Consensus       320 i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  399 (419)
                      ++++.+++++++.+|++++|..+++||+|++++++++++++.++.++|++.++......+.+..+.+.++..-.+..++|
T Consensus       321 i~~~~~~~~~~~~~~v~~~s~d~~~aP~G~~~~~~~~~~p~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  400 (433)
T 1d5t_A          321 IIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALGLLEPIDQKFVAISDLYEPIDDGSESQV  400 (433)
T ss_dssp             EEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHTTTCSCSEEEEEEEEEEEESCCSTTTCE
T ss_pred             EEeCccccCCCCCEEEEEECCCCcccCCCCEEEEEEEecCCCCHHHHHHHHHHHhhhHHhheeccceeeeecCCCCCCCE
Confidence            77888888888999999999339999999999999999988888888888877655444455544444544334566899


Q ss_pred             EEecCCCCCCchHHHhh
Q 014768          400 FISTVTMMPQHTLSQLS  416 (419)
Q Consensus       400 ~~~~~~tp~~d~~~~~~  416 (419)
                      .....++.+.+|+....
T Consensus       401 ~~~~~~d~~~~~e~~~~  417 (433)
T 1d5t_A          401 FCSCSYDATTHFETTCN  417 (433)
T ss_dssp             EECCCCCSCSBSHHHHH
T ss_pred             EECCCCCccccHHHHHH
Confidence            99999999888887654

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=2.4e-45  Score=362.42  Aligned_cols=406  Identities=25%  Similarity=0.484  Sum_probs=320.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCC---------------------
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE---------------------   59 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~---------------------   59 (419)
                      |+.+|||+|||+|+.|.+.|+.|++.|++|+++||++++||.+.++++.++.+|.....                     
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEE   84 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEE
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchh
Confidence            34579999999999999999999999999999999999999999999999888532100                     


Q ss_pred             -------------------------------------------C---------------------------C--------
Q 014768           60 -------------------------------------------Q---------------------------P--------   61 (419)
Q Consensus        60 -------------------------------------------~---------------------------~--------   61 (419)
                                                                 .                           .        
T Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (650)
T 1vg0_A           85 AIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCP  164 (650)
T ss_dssp             EEEBCSSCCCEEEEEEEECSCC----------------------------------------------------------
T ss_pred             hccccccccccccceeEeecccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                       0                           0        


Q ss_pred             ------------------------------------------CCC--------CCCCcceEEccCcceeecCchhhHHHH
Q 014768           62 ------------------------------------------PAH--------LGSSRDYNVDMIPKFIIANGALVRVLI   91 (419)
Q Consensus        62 ------------------------------------------~~~--------~g~~~~~~~d~gp~~~~~~~~~~~~l~   91 (419)
                                                                +..        ++.+++|+||++|+++++++.++++|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL~PklL~~~g~lv~LL~  244 (650)
T 1vg0_A          165 GPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLI  244 (650)
T ss_dssp             ----------------------------------------------CCCHHHHHHTGGGCCEESSCCCEESSSHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEeeCCeeeeCCcHHHHHHH
Confidence                                                      000        235789999999999999999999999


Q ss_pred             hcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccccCCcccHHHHH
Q 014768           92 HTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELI  171 (419)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (419)
                      ++++.+|++|+.++..|++.+|+..++|.+..+.|....+++.+|+.+++|+.++..+.. .+..++  .+...++.+|+
T Consensus       245 ~sgV~~yLEFk~v~~~y~~~~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~-~p~~~~--~~d~~S~~d~L  321 (650)
T 1vg0_A          245 KSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYR--AYEGTTFSEYL  321 (650)
T ss_dssp             HHTGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CHHHHH--TTTTSBHHHHH
T ss_pred             HcCCcceeeEEEccceEEecCCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc-ChHHHh--hhccCCHHHHH
Confidence            999999999999999999999999999999899999999999999999999999887543 221112  34678999999


Q ss_pred             HHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEc
Q 014768          172 AKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML  251 (419)
Q Consensus       172 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~  251 (419)
                      +++++++.+++++...+++....   ..+....+.++..|+.+++.| |.++++||+||+++|+++|++.++++||+|++
T Consensus       322 ~~~~ls~~L~~~L~~~lal~~~~---~~pa~~~l~~i~~~l~sl~~y-g~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l  397 (650)
T 1vg0_A          322 KTQKLTPNLQYFVLHSIAMTSET---TSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL  397 (650)
T ss_dssp             TTSSSCHHHHHHHHHHTTC--CC---SCBHHHHHHHHHHHHHHTTSS-SSSSEEEETTCTTHHHHHHHHHHHHTTCEEES
T ss_pred             HHhCCCHHHHHHHHHHHhccCCC---CCchhHHHHHHHHHHHHHHhh-ccCceEEeCCchhHHHHHHHHHHHHcCCEEEe
Confidence            99999999998887666554322   235566666677787777878 66799999999999999999999999999999


Q ss_pred             CCccceEEEcCC--CcEEEEEe-CCeEEEcCEEEeCCCCCCccccc---cCeeEEEEEEecCCCCCCCCC-CeEEEEecC
Q 014768          252 NKPECKVEFDEE--GKVVGVTS-EGETAKCKKVVCDPSYLPNKVRK---VGRVARAIAIMSHPIPNTNDS-HSVQVILPQ  324 (419)
Q Consensus       252 ~~~V~~I~~~~~--~~v~gV~~-~g~~i~ad~VV~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~-~~~~i~~~~  324 (419)
                      +++|++|.++ +  |++++|++ +|++++||+||+++.++|.....   ++.+.|.++++++++.+.... ....+++|+
T Consensus       398 ~~~V~~I~~~-~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~~~~~~~~~~~v~R~i~i~~~pi~~~~~~~~~~~iiiP~  476 (650)
T 1vg0_A          398 RHSVQCLVVD-KESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVLRTDADQQVSILTVPA  476 (650)
T ss_dssp             SCCEEEEEEE-TTTCCEEEEEETTSCEEECSEEEEEGGGBCTTTTTTCCCEEEEEEEEEESSCSSCCSCCCCCEEEEECC
T ss_pred             CCEeeEEEEe-CCCCeEEEEEeCCCCEEEcCEEEEChhhcCHhHhccccccceEEEEEEecCCCCCcCCCcceEEEEccC
Confidence            9999999985 6  89999986 79999999999988887754322   346788899999987654322 344556776


Q ss_pred             CcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhc-ccccce----------------eeeeccc
Q 014768          325 KQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLL-GPVDEI----------------FYDIYDR  387 (419)
Q Consensus       325 ~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~----------------~~~~~~~  387 (419)
                      .+ +.++.+|+.++|..+++||+|++++++++. ...++..+|++.++.+ ....+.                |..+.+.
T Consensus       477 ~~-g~~~~V~i~~~Ss~~~~cP~G~~Vv~lst~-~~~~~~~eLe~~l~~L~~~~~~~~~~~~~~~~~~vLws~~~~~~~~  554 (650)
T 1vg0_A          477 EE-PGSFAVRVIELCSSTMTCMKGTYLVHLTCM-SSKTAREDLERVVQKLFTPYTEIEAENEQVEKPRLLWALYFNMRDS  554 (650)
T ss_dssp             SS-TTSCCEEEEEECGGGTSSCTTCEEEEEEEE-CSSCHHHHHHHHHHHHCBSCSCCC-------CCBEEEEEEEEEEEC
T ss_pred             cc-CCCCCEEEEEeCCCCCCCCCCCEEEEEEee-cCCCHHHHHHHHHHHHhccccccccccccccCCceEEEEEEEeecc
Confidence            65 467899999999888999999999999876 4457777888877743 322111                2222333


Q ss_pred             c---ccCCCCCCCcEEEecCCCCCCchHHHhh
Q 014768          388 Y---EPVNEPSLDNCFISTVTMMPQHTLSQLS  416 (419)
Q Consensus       388 ~---~~~~~~~~~~i~~~~~~tp~~d~~~~~~  416 (419)
                      .   +....+..++|.+...++.+.+|+....
T Consensus       555 ~~~~~~~~~~~~~ni~~~~~~d~~~~fe~~v~  586 (650)
T 1vg0_A          555 SDISRDCYNDLPSNVYVCSGPDSGLGNDNAVK  586 (650)
T ss_dssp             TTCCGGGSSSCCTTEEEECCCCSSSSSHHHHH
T ss_pred             cccccccccCCCCCEEEeCCCCCccCHHHHHH
Confidence            2   2122567889999999999899987543

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=2.6e-41  Score=334.60  Aligned_cols=369  Identities=16%  Similarity=0.167  Sum_probs=230.7

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~   85 (419)
                      +|||||||++||+||++|+++|++|+||||++++||+++|++.+                    +|.||.|++++..+..
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~--------------------G~~~D~G~~~~~~~~~   62 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQ--------------------GFTFDAGPTVITDPSA   62 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEET--------------------TEEEECSCCCBSCTHH
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeC--------------------CEEEecCceeecCchh
Confidence            79999999999999999999999999999999999999998753                    7999999999987754


Q ss_pred             hhHHHHhc--CCcceeeEEEecceeE--EeCCeEEEecCChhhhhccCCCChH--hHHHHHHHHHHHhhcccCCCCcc--
Q 014768           86 LVRVLIHT--DVTKYLYFKAVDGSFV--YNKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDENDPKTH--  157 (419)
Q Consensus        86 ~~~~l~~~--~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--  157 (419)
                      +.+++...  .+.+++++.+.++.+.  +.+|..+.++.+ .+.+...+.+++  +...+.+|+..++..........  
T Consensus        63 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (501)
T 4dgk_A           63 IEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDND-QTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGT  141 (501)
T ss_dssp             HHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSC-HHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CC
T ss_pred             HHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeecc-HHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccc
Confidence            44444433  4567788988888764  568888888754 555554433321  22344555555544321100000  


Q ss_pred             ccc-----------cC----CcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCC
Q 014768          158 EGM-----------DL----TRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS  222 (419)
Q Consensus       158 ~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (419)
                      ..+           .+    ...++.+++.++..++.++.++.......... ....+....      ++... .  ...
T Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~-p~~~~~~~~------~~~~~-~--~~~  211 (501)
T 4dgk_A          142 VPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGN-PFATSSIYT------LIHAL-E--REW  211 (501)
T ss_dssp             CCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSC-C--CCCTHH------HHHHH-H--SCC
T ss_pred             cccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCC-cchhhhhhh------hhhhh-h--ccC
Confidence            000           00    01233445555544555555443211111111 111111110      00001 1  234


Q ss_pred             eEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc---cccc----
Q 014768          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN---KVRK----  294 (419)
Q Consensus       223 ~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~---~~~~----  294 (419)
                      +.++|+||+++|+++|++.++++|++|++|++|++|+. +++++++|++ +|+++.||+||+|+++...   .+..    
T Consensus       212 G~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~  290 (501)
T 4dgk_A          212 GVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAA  290 (501)
T ss_dssp             CEEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC---------------
T ss_pred             CeEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccc
Confidence            56799999999999999999999999999999999999 5999999999 8999999999999876421   1100    


Q ss_pred             -----------cC-eeEEEEEEecCCCCCCCCCCeEEE------------EecCCcCCCCCcEEEEEeCCC-ccccCCCc
Q 014768          295 -----------VG-RVARAIAIMSHPIPNTNDSHSVQV------------ILPQKQLGRRSDMYLFCCSYS-HNVAPKGK  349 (419)
Q Consensus       295 -----------~~-~~~~~~~~~~~~l~~~~~~~~~~i------------~~~~~~~~~~~~~~v~~~s~~-~~~aP~G~  349 (419)
                                 .+ .....+..++.+....   ....+            ++..+.+++++.+|++++|.. |++||+|+
T Consensus       291 ~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~  367 (501)
T 4dgk_A          291 VKQSNKLQTKRMSNSLFVLYFGLNHHHDQL---AHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGC  367 (501)
T ss_dssp             ------------CCEEEEEEEEESSCCTTS---CSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTC
T ss_pred             hhhhhhhhccccCCceeEEEecccCCcccc---ccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCC
Confidence                       00 0111122233322111   01111            133445677789999999988 99999999


Q ss_pred             EEEEEEeeccCCCccccchhHHhhcccccceee-eeccccccC-CCCCCCcEEEecCCCCCCchHHHhh
Q 014768          350 FIAFVSTEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPV-NEPSLDNCFISTVTMMPQHTLSQLS  416 (419)
Q Consensus       350 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~i~~~~~~tp~~d~~~~~~  416 (419)
                      ++++++++++....      .-.+|++.++++. ++++.++++ .|+++++|++.++.|| .||++.++
T Consensus       368 ~~~~~~~~~p~~~~------~~~~~~~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP-~~~~~~~~  429 (501)
T 4dgk_A          368 GSYYVLAPVPHLGT------ANLDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTP-FDFRDQLN  429 (501)
T ss_dssp             EEEEEEEEECCTTT------SCCCHHHHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECT-TTTC----
T ss_pred             ceEEEEEecCcccc------ccccHHHHHHHHHHHHHHHHHHhhCCChHHceEEEEECCH-HHHHHHcC
Confidence            99999988764211      0125877788888 999999874 5999999999999999 99998765

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.95  E-value=1.3e-26  Score=224.36  Aligned_cols=299  Identities=16%  Similarity=0.189  Sum_probs=184.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC-
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~-   83 (419)
                      +||||||||++||+||++|+++|++|+||||++.+||+++++..+                    ++.+|.||+.+... 
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~--------------------G~~~d~G~~~~~~~~   60 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYK--------------------GFQLSSGAFHMLPNG   60 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEET--------------------TEEEESSSCSCBTTG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccC--------------------CcEEcCCCceEecCC
Confidence            489999999999999999999999999999999999999988643                    79999998766532 


Q ss_pred             --chhhHHHHhcCCcceeeEEEeccee-EEe--C--------CeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcc
Q 014768           84 --GALVRVLIHTDVTKYLYFKAVDGSF-VYN--K--------GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD  150 (419)
Q Consensus        84 --~~~~~~l~~~~~~~~~~~~~~~~~~-~~~--~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (419)
                        ..+.+++.+.++...  +...+..+ .+.  +        +..+.++.     +. ...+..++.   ++...+....
T Consensus        61 ~~~~~~~l~~~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~---~~~~~~~~~~  129 (425)
T 3ka7_A           61 PGGPLACFLKEVEASVN--IVRSEMTTVRVPLKKGNPDYVKGFKDISFND-----FP-SLLSYKDRM---KIALLIVSTR  129 (425)
T ss_dssp             GGSHHHHHHHHTTCCCC--EEECCCCEEEEESSTTCCSSTTCEEEEEGGG-----GG-GGSCHHHHH---HHHHHHHHTT
T ss_pred             CccHHHHHHHHhCCCce--EEecCCceEEeecCCCcccccccccceehhh-----hh-hhCCHHHHH---HHHHHHHhhh
Confidence              235555555666533  22222222 221  1        33333321     11 122222322   2222222211


Q ss_pred             cCCCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCC
Q 014768          151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (419)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG  230 (419)
                      ..        .....++.+|+++..-++.+..++..........+....+....+..+..+    ..+ +  +..+|+||
T Consensus       130 ~~--------~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~----~~~-~--~~~~~~gG  194 (425)
T 3ka7_A          130 KN--------RPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENM----YRF-G--GTGIPEGG  194 (425)
T ss_dssp             TS--------CCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHH----HHH-C--SCEEETTS
T ss_pred             hc--------CCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHH----Hhc-C--CccccCCC
Confidence            00        124578999998875555555555443322222222222333333222221    122 2  24589999


Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC------Ccc--c--c-------
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL------PNK--V--R-------  293 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~------~~~--~--~-------  293 (419)
                      ++.++++|++.++++|++|++|++|++|..+ ++++++|+++|+++.||.||++++.+      +..  .  +       
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~  273 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILIE-NGKAAGIIADDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMV  273 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEEE-CCEEEEEEECCEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHh
Confidence            9999999999999999999999999999994 88898898899999999999988653      110  0  0       


Q ss_pred             ---ccCeeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCC-ccccCCCcEEEEEEeec
Q 014768          294 ---KVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYS-HNVAPKGKFIAFVSTEA  358 (419)
Q Consensus       294 ---~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~-~~~aP~G~~~l~~~~~~  358 (419)
                         ..+........++.++..    .+ .++++...   .+...+..+|.. |++||+|++++++....
T Consensus       274 ~~~~~~~~~~v~l~~~~~~~~----~~-~~~~~~~~---~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~  334 (425)
T 3ka7_A          274 GTLQPSAGIKICLAADEPLVG----HT-GVLLTPYT---RRINGVNEVTQADPELAPPGKHLTMCHQYV  334 (425)
T ss_dssp             HHCCCBEEEEEEEEESSCSSC----SS-SEEECCSS---SSEEEEECGGGTCGGGSCTTCEEEEEEEEE
T ss_pred             hCcCCCceEEEEeecCCCccC----cC-EEEECCCh---hhcceEEeccCCCCCcCCCCCeEEEEEecc
Confidence               011122222233443321    11 23344321   234567778887 99999999999876543

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.94  E-value=1.3e-25  Score=216.93  Aligned_cols=301  Identities=14%  Similarity=0.141  Sum_probs=185.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC-
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~-   83 (419)
                      +||||||||++||+||++|+++|++|+||||++.+||+++++..+                    ++.+|.||+++... 
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~--------------------g~~~d~G~~~~~~~~   60 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYK--------------------GFQLSTGALHMIPHG   60 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEET--------------------TEEEESSSCSEETTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccC--------------------CEEEecCCeEEEccC
Confidence            389999999999999999999999999999999999999998643                    79999999776542 


Q ss_pred             --chhhHHHHhcCCcceeeEEEeccee-EEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccc
Q 014768           84 --GALVRVLIHTDVTKYLYFKAVDGSF-VYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (419)
Q Consensus        84 --~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (419)
                        ..+.+++.+.++.  .++...++.. .+.+|..+.++.. ...+     +..++..+.++.......         ..
T Consensus        61 ~~~~~~~l~~~lg~~--~~~~~~~~~~~~~~~g~~~~~~~~-~~~l-----~~~~~~~~~~~~~~~~~~---------~~  123 (421)
T 3nrn_A           61 EDGPLAHLLRILGAK--VEIVNSNPKGKILWEGKIFHYRES-WKFL-----SVKEKAKALKLLAEIRMN---------KL  123 (421)
T ss_dssp             TSSHHHHHHHHHTCC--CCEEECSSSCEEEETTEEEEGGGG-GGGC-----C--------CCHHHHHTT---------CC
T ss_pred             CChHHHHHHHHhCCc--ceEEECCCCeEEEECCEEEEcCCc-hhhC-----CHhHHHHHHHHHHHHHhc---------cC
Confidence              2455555555654  3444444433 3447777776632 2111     111222222222222110         00


Q ss_pred             cCCcccHHHHHHHcCCC-hhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHH
Q 014768          161 DLTRVTTRELIAKYGLD-DNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (419)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~  239 (419)
                      .....++.++++..+++ +.+..++.+........+....+....+..+..+    ..+ +  +.++|+||++.++++|+
T Consensus       124 ~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~--g~~~~~gG~~~l~~~l~  196 (421)
T 3nrn_A          124 PKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAA----LRW-G--GPGLIRGGCKAVIDELE  196 (421)
T ss_dssp             CCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHH----HHH-C--SCEEETTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHH----hhc-C--CcceecCCHHHHHHHHH
Confidence            12347889999887444 4444545443332222222223333333332222    122 2  34699999999999999


Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC------C-cccc--------c--cCeeEEEE
Q 014768          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL------P-NKVR--------K--VGRVARAI  302 (419)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~------~-~~~~--------~--~~~~~~~~  302 (419)
                      +.++++|++|++|++|++|.. +++++  |.++|+++.||.||++++.+      + ...+        .  .+......
T Consensus       197 ~~~~~~G~~i~~~~~V~~i~~-~~~~v--V~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~  273 (421)
T 3nrn_A          197 RIIMENKGKILTRKEVVEINI-EEKKV--YTRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFN  273 (421)
T ss_dssp             HHHHTTTCEEESSCCEEEEET-TTTEE--EETTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHCCCEEEcCCeEEEEEE-ECCEE--EEeCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEE
Confidence            999999999999999999998 47776  66688999999999988653      1 1010        0  11112222


Q ss_pred             EEecCC-CCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCC-ccccCCCcEEEEEEeeccCCC
Q 014768          303 AIMSHP-IPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYS-HNVAPKGKFIAFVSTEAETDH  362 (419)
Q Consensus       303 ~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~-~~~aP~G~~~l~~~~~~~~~~  362 (419)
                      ..++.+ +.     ....+ +++..   . ...+..+|.. |++||+|++++++...++..+
T Consensus       274 l~~~~~~~~-----~~~~~-~~~~~---~-~~~i~~~s~~~p~~ap~G~~~~~~~~~~~~~~  325 (421)
T 3nrn_A          274 LAVPGEPRI-----GNTIV-FTPGL---M-INGFNEPSALDKSLAREGYTLIMAHMALKNGN  325 (421)
T ss_dssp             EEEESSCSS-----CSSEE-ECTTS---S-SCEEECGGGTCGGGSCTTEEEEEEEEECTTCC
T ss_pred             EEEcCCccc-----CCeEE-EcCCc---c-eeeEeccCCCCCCcCCCCceEEEEEEeecccc
Confidence            233333 21     11233 43321   1 2346778877 999999999999988776543

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.89  E-value=4.6e-23  Score=203.39  Aligned_cols=254  Identities=19%  Similarity=0.153  Sum_probs=157.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      ++||+|||||++||+||++|+++|++|+|+|+++++||+++|.+.+                    ++.+|+|++++...
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~~~   98 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID--------------------GYPYEMGGTWVHWH   98 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEET--------------------TEEEECSCCCBCTT
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccC--------------------CeeecCCCeEecCc
Confidence            3899999999999999999999999999999999999999998643                    78999999998754


Q ss_pred             -chhhHHHHhcCCcceeeEEE--e--cceeEEeC--CeEEEecCChhhhhccCCCChHhHHHHHHHHHHHh-hcccCCCC
Q 014768           84 -GALVRVLIHTDVTKYLYFKA--V--DGSFVYNK--GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQ-DYDENDPK  155 (419)
Q Consensus        84 -~~~~~~l~~~~~~~~~~~~~--~--~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  155 (419)
                       ..+.+++.+.++.+.+....  .  ...+.+.+  |....++..   ....    .+. ..+.+|..... ......+.
T Consensus        99 ~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~----~~~-~~~~~~~~~~~~~~~~~~~~  170 (495)
T 2vvm_A           99 QSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHE---AEDE----LLR-SALHKFTNVDGTNGRTVLPF  170 (495)
T ss_dssp             SHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEESSTTCCEEECHH---HHHH----HHH-HHHHHHHCSSSSTTTTTCSC
T ss_pred             cHHHHHHHHHcCCcceeecccccCCCceEEEecCCCCceeecCHH---HHHH----HHH-HHHHHHHccchhhhhhcCCC
Confidence             34666666678765443332  1  12334444  554444421   1100    011 11122222000 00000000


Q ss_pred             ccc------cccCCcccHHHHHHHcC--CChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEe
Q 014768          156 THE------GMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP  227 (419)
Q Consensus       156 ~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  227 (419)
                      ...      ...+...++.+|+++.+  +++..+.++..........+....++...+..+.........+....+.+++
T Consensus       171 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (495)
T 2vvm_A          171 PHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKF  250 (495)
T ss_dssp             TTSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEE
T ss_pred             CCCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEe
Confidence            000      00234678999998876  7777777766555433322222233333332211100000000011234578


Q ss_pred             cCCcCcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          228 LYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       228 ~gG~~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                      +||++.++++|.+.+++.| ++|+++++|++|..+ ++++ .|++ +|++++||+||++++.
T Consensus       251 ~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          251 KDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE-RDAA-RVTARDGREFVAKRVVCTIPL  310 (495)
T ss_dssp             TTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC-SSSE-EEEETTCCEEEEEEEEECCCG
T ss_pred             CCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc-CCEE-EEEECCCCEEEcCEEEECCCH
Confidence            9999999999999999999 999999999999984 6665 4555 7778999999998854

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.89  E-value=1.8e-23  Score=207.25  Aligned_cols=247  Identities=16%  Similarity=0.129  Sum_probs=142.2

Q ss_pred             cceEEEECCCchHHHHhhcccc-CCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768            4 EYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~   82 (419)
                      ++||||||||++||+||++|++ .|++|+||||++++||+++|....                   .+|.+|.|||++..
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~-------------------~G~~~D~G~h~~~~   70 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTP-------------------EGFLYDVGGHVIFS   70 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECT-------------------TSCEEESSCCCCCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEec-------------------CCEEEEeCceEecC
Confidence            5899999999999999999998 599999999999999999985311                   27999999999976


Q ss_pred             Cch-hhHHHHhcCCcceeeEEEecc-eeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccc
Q 014768           83 NGA-LVRVLIHTDVTKYLYFKAVDG-SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (419)
Q Consensus        83 ~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (419)
                      ..+ +.+++.+.+... .++...++ .+.+.+|+.+..|...  .+.. +......+....+......... .       
T Consensus        71 ~~~~v~~l~~e~~~~~-~~~~~~~~~~~i~~~g~~~~~p~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-------  138 (513)
T 4gde_A           71 HYKYFDDCLDEALPKE-DDWYTHQRISYVRCQGQWVPYPFQN--NISM-LPKEEQVKCIDGMIDAALEARV-A-------  138 (513)
T ss_dssp             CBHHHHHHHHHHSCSG-GGEEEEECCEEEEETTEEEESSGGG--GGGG-SCHHHHHHHHHHHHHHHHHHHT-C-------
T ss_pred             CCHHHHHHHHHhCCcc-ceeEEecCceEEEECCeEeecchhh--hhhh-cchhhHHHHHHHHHHHHHhhhc-c-------
Confidence            655 444444443332 22333333 3556788888877431  1111 1100111111222221111110 0       


Q ss_pred             cCCcccHHHHHHHcCCChhHH-HHHHHHH-hhccC----------CCCCCCc-HHHHHHHHHHHHHHhhhccCCCeEEEe
Q 014768          161 DLTRVTTRELIAKYGLDDNTI-DFIGHAL-ALHRD----------DRYLNEP-ALDTVKRMKLYAESIARFQGGSPYIYP  227 (419)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~-~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~p  227 (419)
                      .....++.+|+.+. +.+.+. .++.+.. .++..          ...+... ........ ........+.....+.+|
T Consensus       139 ~~~~~s~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  216 (513)
T 4gde_A          139 NTKPKTFDEWIVRM-MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNV-ILGKTAGNWGPNATFRFP  216 (513)
T ss_dssp             CSCCCSHHHHHHHH-HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHH-HHTCCCCSCBTTBEEEEE
T ss_pred             cccccCHHHHHHHh-hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhh-hhcccccccccccceeec
Confidence            11345666765443 112221 1122111 11110          1111111 11111110 000001111112334454


Q ss_pred             -cCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 014768          228 -LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (419)
Q Consensus       228 -~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~  286 (419)
                       +||++.++++|++.+.+.|++|++|++|++|.. +++++  +..+|+++.||+||++..
T Consensus       217 ~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~-~~~~v--~~~~G~~~~ad~vI~t~P  273 (513)
T 4gde_A          217 ARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNA-NNKTV--TLQDGTTIGYKKLVSTMA  273 (513)
T ss_dssp             SSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEET-TTTEE--EETTSCEEEEEEEEECSC
T ss_pred             ccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEc-cCCEE--EEcCCCEEECCEEEECCC
Confidence             799999999999999999999999999999997 36643  233899999999999984

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.89  E-value=6.5e-22  Score=196.25  Aligned_cols=256  Identities=18%  Similarity=0.208  Sum_probs=157.3

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~   80 (419)
                      |+..+||||||||++||+||++|+++|++|+|+|+++++||++++....                   .++.+|+|++++
T Consensus         1 m~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~-------------------~g~~~d~G~~~~   61 (520)
T 1s3e_A            1 MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ-------------------KVKYVDLGGSYV   61 (520)
T ss_dssp             --CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCT-------------------TTSCEESSCCEE
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccC-------------------CCcccccCceEe
Confidence            7778899999999999999999999999999999999999999988631                   168899999998


Q ss_pred             ecCc-hhhHHHHhcCCcceeeEEEecc-eeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCC--Cc
Q 014768           81 IANG-ALVRVLIHTDVTKYLYFKAVDG-SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP--KT  156 (419)
Q Consensus        81 ~~~~-~~~~~l~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  156 (419)
                      .... .+.+++.+.++..+...  .+. .+.+.+|..+..+..    +.. .....+...+.+++..+.......+  ..
T Consensus        62 ~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~g~~~~~~~~----~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (520)
T 1s3e_A           62 GPTQNRILRLAKELGLETYKVN--EVERLIHHVKGKSYPFRGP----FPP-VWNPITYLDHNNFWRTMDDMGREIPSDAP  134 (520)
T ss_dssp             CTTCHHHHHHHHHTTCCEEECC--CSSEEEEEETTEEEEECSS----SCC-CCSHHHHHHHHHHHHHHHHHHTTSCTTCG
T ss_pred             cCCcHHHHHHHHHcCCcceecc--cCCceEEEECCEEEEecCC----CCC-CCCHHHHHHHHHHHHHHHHHHhhcCcCCC
Confidence            7654 45555555676543211  122 223456665554421    110 0111122233344333333221110  00


Q ss_pred             ccc---ccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHH--HHHhhhccCCCeEEEecCCc
Q 014768          157 HEG---MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLY--AESIARFQGGSPYIYPLYGL  231 (419)
Q Consensus       157 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~p~gG~  231 (419)
                      +..   ..+...++.+|+++...++.++.++..........+....+....+..+..+  ...+..........++.||+
T Consensus       135 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~  214 (520)
T 1s3e_A          135 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGS  214 (520)
T ss_dssp             GGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCT
T ss_pred             ccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCH
Confidence            000   0134678999999988888777766654332222222222332222111100  00000000123456899999


Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                      +.++++|++.+   |++|++|++|++|..+ ++++. |++ +|+++.||+||++.+.
T Consensus       215 ~~l~~~l~~~l---g~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VI~a~p~  266 (520)
T 1s3e_A          215 GQVSERIMDLL---GDRVKLERPVIYIDQT-RENVL-VETLNHEMYEAKYVISAIPP  266 (520)
T ss_dssp             HHHHHHHHHHH---GGGEESSCCEEEEECS-SSSEE-EEETTSCEEEESEEEECSCG
T ss_pred             HHHHHHHHHHc---CCcEEcCCeeEEEEEC-CCeEE-EEECCCeEEEeCEEEECCCH
Confidence            99999998765   8899999999999984 77766 666 8889999999998854

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.89  E-value=3.2e-22  Score=196.49  Aligned_cols=250  Identities=16%  Similarity=0.139  Sum_probs=154.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCC--eEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~   82 (419)
                      +||+|||||++||+||++|+++|+  +|+|||+++++||++++....                   .++.+|.|++.+..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~-------------------~g~~~d~G~~~~~~   63 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP-------------------NGAIFELGPRGIRP   63 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECT-------------------TSCEEESSCCCBCC
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEecc-------------------CCeEEEeCCCcccC
Confidence            599999999999999999999999  999999999999999986531                   27899999998865


Q ss_pred             Cc----hhhHHHHhcCCcceeeEEEe-----cceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCC
Q 014768           83 NG----ALVRVLIHTDVTKYLYFKAV-----DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND  153 (419)
Q Consensus        83 ~~----~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (419)
                      .+    .+.+++.+.++.+.+.....     ...+.+.+|+...+|.. ...+...+..+ .+..   +...+.....  
T Consensus        64 ~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~-~~~~---~~~~~~~~~~--  136 (477)
T 3nks_A           64 AGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTG-LRGLLRPSPPF-SKPL---FWAGLRELTK--  136 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEETTEEEECCCS-SCC---CCTTS-CSCS---SHHHHTTTTS--
T ss_pred             CCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEECCEEEECCCC-hhhcccccchh-hhHH---HHHHHHhhhc--
Confidence            32    24555666777754333221     12456778888888754 22221111111 1000   1111222211  


Q ss_pred             CCccccccCCcccHHHHHHHcCCChhH-HHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhh----------------
Q 014768          154 PKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIA----------------  216 (419)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  216 (419)
                      +.  .  .....++.+|+++. +...+ ..++.+........+....+....+..+.......+                
T Consensus       137 ~~--~--~~~~~s~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~  211 (477)
T 3nks_A          137 PR--G--KEPDETVHSFAQRR-LGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQP  211 (477)
T ss_dssp             CC--C--CSSCCBHHHHHHHH-HCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CC
T ss_pred             CC--C--CCCCcCHHHHHHHh-hCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCC
Confidence            00  0  12457888888764 22332 333333222111111112222222221111100000                


Q ss_pred             --------hccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768          217 --------RFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (419)
Q Consensus       217 --------~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~  287 (419)
                              .. ...++++++||++.++++|++.+++.|++|++|++|++|..+ +++++.|+++++++.||+||+++..
T Consensus       212 ~~~~~~~~~~-~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~v~~~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          212 DSALIRQALA-ERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQ-AEGRWKVSLRDSSLEADHVISAIPA  288 (477)
T ss_dssp             CCHHHHHHHH-TTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEC-GGGCEEEECSSCEEEESEEEECSCH
T ss_pred             chhhhhhhcc-cCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEc-CCceEEEEECCeEEEcCEEEECCCH
Confidence                    01 123578999999999999999999999999999999999984 6554567777778999999998754

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.88  E-value=1.1e-21  Score=192.60  Aligned_cols=315  Identities=12%  Similarity=0.079  Sum_probs=183.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~   82 (419)
                      ..+||+|||||++||+||+.|+++|++|+|+|+++.+||+++|.+..                    ++.+|.|++++..
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~--------------------g~~~~~g~~~~~~   74 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA--------------------GYLVEQGPNSFLD   74 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEET--------------------TEEEESSCCCEET
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccC--------------------CeeeecChhhhhh
Confidence            35799999999999999999999999999999999999999998743                    7999999999987


Q ss_pred             Cch-hhHHHHhcCCcceeeEEEe--cceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768           83 NGA-LVRVLIHTDVTKYLYFKAV--DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (419)
Q Consensus        83 ~~~-~~~~l~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (419)
                      ..+ +.+++.+.++...+.....  ...+.+.+|+.+.+|....+.+...+.++.++      .+.+........   . 
T Consensus        75 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~-  144 (478)
T 2ivd_A           75 REPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGAR------LRVAGELFSRRA---P-  144 (478)
T ss_dssp             TCHHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHTCSSSCHHHH------HHHHGGGGCCCC---C-
T ss_pred             hhHHHHHHHHHcCCcceeeecCccccceEEEECCEEEECCCCHHHhccCCCCCHHHH------HHHhhhhhcCCC---C-
Confidence            544 5555666787655443221  12345678888888765333333333332211      112222211110   0 


Q ss_pred             ccCCcccHHHHHHHcCCChh-HHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH-------Hhh-h----------ccC
Q 014768          160 MDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAE-------SIA-R----------FQG  220 (419)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~----------~~g  220 (419)
                       .....++.+|+++. +.+. ...++.+........+....++...+..+..+..       .+. .          ...
T Consensus       145 -~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (478)
T 2ivd_A          145 -EGVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGT  222 (478)
T ss_dssp             -TTCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CC
T ss_pred             -CCCCCCHHHHHHHh-hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcccc
Confidence             13567899999875 3333 3334443332222222112222222222211110       000 0          001


Q ss_pred             C----CeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCeEEEcCEEEeCCCCC----
Q 014768          221 G----SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGETAKCKKVVCDPSYL----  288 (419)
Q Consensus       221 ~----~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~~i~ad~VV~~~~~~----  288 (419)
                      .    ..+++++||++.|+++|++.+   |++|+++++|++|..+ ++++ .|++    +|++++||+||++++..    
T Consensus       223 ~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~g~~~~ad~vV~a~~~~~~~~  297 (478)
T 2ivd_A          223 APKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE-DGGW-RLIIEEHGRRAELSVAQVVLAAPAHATAK  297 (478)
T ss_dssp             SCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC---CC-EEEEEETTEEEEEECSEEEECSCHHHHHH
T ss_pred             cccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec-CCeE-EEEEeecCCCceEEcCEEEECCCHHHHHH
Confidence            2    567899999999999999877   7899999999999984 6553 5554    67889999999988543    


Q ss_pred             --Cccc-------c--ccCeeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCC-ccccCCCcEEEEEEe
Q 014768          289 --PNKV-------R--KVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYS-HNVAPKGKFIAFVST  356 (419)
Q Consensus       289 --~~~~-------~--~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~-~~~aP~G~~~l~~~~  356 (419)
                        |...       .  ..+...+.+...+.++.... ... ..+++...  ..+...+...+.. +..+|+|+.++.+.+
T Consensus       298 ll~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~-~~~~~~~~--~~~~~~~~~~s~~~~~~~p~g~~~l~~~~  373 (478)
T 2ivd_A          298 LLRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAP-DGF-GFLVPAEE--QRRMLGAIHASTTFPFRAEGGRVLYSCMV  373 (478)
T ss_dssp             HHTTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCC-CSS-EEECCGGG--CCSCCEEEEHHHHCGGGBSTTCEEEEEEE
T ss_pred             HhhccCHHHHHHHhcCCCCcEEEEEEEEccccCCCC-Cce-EEEecCCC--CCceEEEEEEcccCCCcCCCCCEEEEEEe
Confidence              1110       0  01223333334444431111 111 22343221  1233445555544 778899988876665


Q ss_pred             ec
Q 014768          357 EA  358 (419)
Q Consensus       357 ~~  358 (419)
                      ..
T Consensus       374 ~~  375 (478)
T 2ivd_A          374 GG  375 (478)
T ss_dssp             EC
T ss_pred             CC
Confidence            43

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.86  E-value=1e-20  Score=184.44  Aligned_cols=251  Identities=18%  Similarity=0.218  Sum_probs=151.0

Q ss_pred             CC-CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcce
Q 014768            1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (419)
Q Consensus         1 m~-~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~   79 (419)
                      |+ .++||+|||||++||+||++|+++|++|+|+|+++++||++++....                    ++.+|.|+++
T Consensus         1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~~~g~~~   60 (453)
T 2yg5_A            1 VPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTID--------------------GAVLEIGGQW   60 (453)
T ss_dssp             -CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEET--------------------TEEEECSCCC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccC--------------------CceeccCCeE
Confidence            44 46899999999999999999999999999999999999999987632                    6889999998


Q ss_pred             eecCc-hhhHHHHhcCCcceeeEEEecceeE-EeC-CeEEEecCChhhhhccCCCChHhHHHHHHHHH----HHhhcccC
Q 014768           80 IIANG-ALVRVLIHTDVTKYLYFKAVDGSFV-YNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFI----YVQDYDEN  152 (419)
Q Consensus        80 ~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  152 (419)
                      +.... .+.+++.+.++..+..+.  +.... +.+ |....+... ..    . ........+.+++.    +.......
T Consensus        61 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~g~~~~~~~~-~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (453)
T 2yg5_A           61 VSPDQTALISLLDELGLKTFERYR--EGESVYISSAGERTRYTGD-SF----P-TNETTKKEMDRLIDEMDDLAAQIGAE  132 (453)
T ss_dssp             BCTTCHHHHHHHHHTTCCEEECCC--CSEEEEECTTSCEEEECSS-SC----S-CCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             ecCccHHHHHHHHHcCCccccccc--CCCEEEEeCCCceeeccCC-CC----C-CChhhHHHHHHHHHHHHHHHhhcCCC
Confidence            86543 455556556765432221  11222 222 544443211 00    0 00001111222221    11111111


Q ss_pred             CCCccc-cccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCC-CCcHHHHHHHHHHHHHHhhhc-----cCCCeEE
Q 014768          153 DPKTHE-GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYL-NEPALDTVKRMKLYAESIARF-----QGGSPYI  225 (419)
Q Consensus       153 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~  225 (419)
                      .+.... ...+...++.+|+++.+.++.++.++..........+.. ..+....+..    +...+.+     ......+
T Consensus       133 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~----~~~~g~~~~~~~~~~~~~~  208 (453)
T 2yg5_A          133 EPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLM----AASAGSFSHLVDEDFILDK  208 (453)
T ss_dssp             CGGGSTTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHH----HHHTTCHHHHHCHHHHTCE
T ss_pred             CCCCCcchhhhhhccHHHHHHhhcCCHHHHHHHHHHHHhhcccCCcccccHHHHHHH----hccCCcHhhhccCCCcceE
Confidence            110000 001346789999999888887777766544222221111 2233222211    1111100     0011246


Q ss_pred             EecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (419)
Q Consensus       226 ~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~  287 (419)
                      +++||++.++++|++.+   |++|++|++|++|..+ +++.+.|+++|+++.||+||++++.
T Consensus       209 ~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~-~~~~v~v~~~~~~~~ad~VI~a~p~  266 (453)
T 2yg5_A          209 RVIGGMQQVSIRMAEAL---GDDVFLNAPVRTVKWN-ESGATVLADGDIRVEASRVILAVPP  266 (453)
T ss_dssp             EETTCTHHHHHHHHHHH---GGGEECSCCEEEEEEE-TTEEEEEETTTEEEEEEEEEECSCG
T ss_pred             EEcCChHHHHHHHHHhc---CCcEEcCCceEEEEEe-CCceEEEEECCeEEEcCEEEEcCCH
Confidence            89999999999998765   8899999999999984 6652346678899999999998854

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.86  E-value=3.2e-21  Score=188.88  Aligned_cols=251  Identities=12%  Similarity=0.164  Sum_probs=145.0

Q ss_pred             CCC-cceEEEECCCchHHHHhhccccCC------CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEE
Q 014768            1 MDE-EYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV   73 (419)
Q Consensus         1 m~~-~~dvvIIGaGi~Gl~aA~~La~~G------~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~   73 (419)
                      |+. .+||+|||||++||+||++|+++|      ++|+|||+++++||++++....                    ++.+
T Consensus         1 M~~~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~--------------------g~~~   60 (470)
T 3i6d_A            1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKD--------------------GYII   60 (470)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCT--------------------TCCE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccC--------------------CEEe
Confidence            543 489999999999999999999999      9999999999999999987632                    6889


Q ss_pred             ccCcceeecCc-hhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChh-------hh-hccCCCChHhHHHHHHHHH
Q 014768           74 DMIPKFIIANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDM-------EA-LKSPLMGIFEKRRARKFFI  144 (419)
Q Consensus        74 d~gp~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~  144 (419)
                      |.|++++.... .+.+++.+.++...+........+.+.+|....+|....       .. +...+.+..++  +.....
T Consensus        61 d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~  138 (470)
T 3i6d_A           61 ERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGK--ARAAMD  138 (470)
T ss_dssp             ESSCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEECSSCEEECCC---------------------CCS--HHHHHH
T ss_pred             ccChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEECCEEEECCCCcccCCcCchHHhhccCcCCHHHH--HHHhcC
Confidence            99998876543 455666667887654422233345566777766653210       00 11111111010  111111


Q ss_pred             HHhhcccCCCCccccccCCcccHHHHHHHcCCChhHHHHHHHHH-hhccCCCCCCCcHHHHHHHHH-------HHHHHhh
Q 014768          145 YVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL-ALHRDDRYLNEPALDTVKRMK-------LYAESIA  216 (419)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  216 (419)
                      .+.   .   ..   ......++.+|++...-......++.+.. .++.. +....+....+..+.       .+...+.
T Consensus       139 ~~~---~---~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  208 (470)
T 3i6d_A          139 FIL---P---AS---KTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAG-DIDKLSLMSTFPQFYQTEQKHRSLILGMK  208 (470)
T ss_dssp             HHS---C---CC---SSSSCCBHHHHHHHHSCHHHHHHTHHHHHHHTTCS-CTTTBBHHHHCGGGCC-------------
T ss_pred             ccc---C---CC---CCCCCcCHHHHHHHhcCHHHHHHhccchhcEEecC-CHHHhhHHHHHHHHHHHHHhcCcHHHHHH
Confidence            111   0   00   01356788999877532222333333332 22221 111111111110000       0000000


Q ss_pred             h-----------ccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeC
Q 014768          217 R-----------FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD  284 (419)
Q Consensus       217 ~-----------~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~  284 (419)
                      .           ......++++++|++.++++|++.+.+  ++|+++++|++|..+ ++++ .|++ +|+++.||+||++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~~ad~vi~a  284 (470)
T 3i6d_A          209 KTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHS-GSCY-SLELDNGVTLDADSVIVT  284 (470)
T ss_dssp             ------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEEC-SSSE-EEEESSSCEEEESEEEEC
T ss_pred             hhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEc-CCeE-EEEECCCCEEECCEEEEC
Confidence            0           000235779999999999999987654  899999999999984 6665 4666 7888999999998


Q ss_pred             CCC
Q 014768          285 PSY  287 (419)
Q Consensus       285 ~~~  287 (419)
                      +..
T Consensus       285 ~p~  287 (470)
T 3i6d_A          285 APH  287 (470)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            743

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.86  E-value=5.4e-21  Score=188.98  Aligned_cols=256  Identities=12%  Similarity=0.077  Sum_probs=150.5

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~   80 (419)
                      |.+.+||+|||||++||+||+.|+++|++|+|+|+++.+||++++....                    ++.+|.|++++
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~~~g~~~~   69 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD--------------------GLIWDEGANTM   69 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEET--------------------TEEEESSCCCB
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccC--------------------CeEEecCCccc
Confidence            4456899999999999999999999999999999999999999988642                    78999999998


Q ss_pred             ecCc-hhhHHHHhcCCcceeeEEEe-cceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccc
Q 014768           81 IANG-ALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (419)
Q Consensus        81 ~~~~-~~~~~l~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (419)
                      .... .+.+++.+.++...+.+... ...+.+.+|..+.+|.+....+...+.+..++  +......+..... .+.  .
T Consensus        70 ~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~--~  144 (504)
T 1sez_A           70 TESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSK--LQMLLEPILWKNK-KLS--Q  144 (504)
T ss_dssp             CCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHH--HHHHTHHHHC----------
T ss_pred             ccCcHHHHHHHHHcCCcccceeccCCCceEEEECCeEEECCCCHHHHhccccCCHHHH--HHHhHhhhccCcc-ccc--c
Confidence            7554 45566666788765444322 12345678888888755333333334433221  1111111110000 000  0


Q ss_pred             cccCCcccHHHHHHHcCCChhHHHHHHHHHh-hccCCCCCCCcHHHHHHHHHHH-----------HHH-hhhcc------
Q 014768          159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLY-----------AES-IARFQ------  219 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~------  219 (419)
                       ......++.+|+++..-++....++.+... .+.. +....++...+..+..+           +.. +....      
T Consensus       145 -~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  222 (504)
T 1sez_A          145 -VSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGG-DPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGP  222 (504)
T ss_dssp             ----CCCBHHHHHHHHHCHHHHHTTHHHHHHHHHSC-CGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC---------
T ss_pred             -cCCCCccHHHHHHHHcCHHHHHHHHHHHHccccCC-ChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccc
Confidence             012357899998765222223333443322 2221 11111221111111110           000 00000      


Q ss_pred             --------CCCeEEEecCCcCcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCc-----EEEEEe---CC---eEEEcC
Q 014768          220 --------GGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGK-----VVGVTS---EG---ETAKCK  279 (419)
Q Consensus       220 --------g~~~~~~p~gG~~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~-----v~gV~~---~g---~~i~ad  279 (419)
                              ...++++++||++.|+++|++.+   | ++|++|++|++|..+ +++     .+.|++   +|   +++.||
T Consensus       223 ~~~~~~~~~~~~~~~~~GG~~~l~~~l~~~l---~~~~i~~~~~V~~I~~~-~~~~~~~~~~~v~~~~~~g~~~~~~~ad  298 (504)
T 1sez_A          223 PKTSANKKRQRGSFSFLGGMQTLTDAICKDL---REDELRLNSRVLELSCS-CTEDSAIDSWSIISASPHKRQSEEESFD  298 (504)
T ss_dssp             -CCCSCCSTTCSCBEETTCTHHHHHHHHTTS---CTTTEETTCCEEEEEEE-CSSSSSSCEEEEEEBCSSSSCBCCCEES
T ss_pred             cchhhccccCCceEeeCcHHHHHHHHHHhhc---ccceEEcCCeEEEEEec-CCCCcccceEEEEEcCCCCccceeEECC
Confidence                    01246789999999999998754   5 789999999999984 554     144544   45   679999


Q ss_pred             EEEeCCCC
Q 014768          280 KVVCDPSY  287 (419)
Q Consensus       280 ~VV~~~~~  287 (419)
                      +||++.+.
T Consensus       299 ~VI~a~p~  306 (504)
T 1sez_A          299 AVIMTAPL  306 (504)
T ss_dssp             EEEECSCH
T ss_pred             EEEECCCH
Confidence            99998854

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.85  E-value=2.5e-20  Score=182.81  Aligned_cols=250  Identities=12%  Similarity=0.149  Sum_probs=153.7

Q ss_pred             cceEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~   81 (419)
                      .+||+|||||++||+||++|+++|  ++|+|||+++.+||++++....                    ++.+|.|++.+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~~~g~~~~~   63 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYRED--------------------GFTIERGPDSYV   63 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECST--------------------TCCEESSCCCEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeC--------------------CEEEecCchhhh
Confidence            589999999999999999999999  9999999999999999987632                    688999998887


Q ss_pred             cCc-hhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCCh--------hhhhccCCCChHhHHHHHHHHHHHhhcccC
Q 014768           82 ANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--------MEALKSPLMGIFEKRRARKFFIYVQDYDEN  152 (419)
Q Consensus        82 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (419)
                      ... .+.+++.+.++...+........+.+.+|....+|...        ...+...+.+...+  + .+......... 
T Consensus        64 ~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~-  139 (475)
T 3lov_A           64 ARKHILTDLIEAIGLGEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEK--Q-EVADLLLHPSD-  139 (475)
T ss_dssp             TTSTHHHHHHHHTTCGGGEEECCCCCEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCHHHH--H-HHHHHHHSCCT-
T ss_pred             cccHHHHHHHHHcCCcceEeecCCCceEEEECCEEEECCCcccccCcCchHHHhhccCCChhHH--H-HhhCcccCCcc-
Confidence            543 45566666788765443223345566788777766421        22233344443222  2 22222221110 


Q ss_pred             CCCccccccCCcccHHHHHHHcCCChhHHHHHHHHH-hhccCCCCCCCcHHHHHHHHHHH-------HHHhhhc------
Q 014768          153 DPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL-ALHRDDRYLNEPALDTVKRMKLY-------AESIARF------  218 (419)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~------  218 (419)
                       +.   .......++.+|+++..-......++.+.. ..+.. +...-+....+..+..+       ...+...      
T Consensus       140 -~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  214 (475)
T 3lov_A          140 -SL---RIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYAG-NIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQL  214 (475)
T ss_dssp             -TC---CCCSSCCBHHHHHHHHHCHHHHHHTHHHHHHGGGCC-CTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC----
T ss_pred             -cc---cCCCCCcCHHHHHHHHhCHHHHHHHHHHHhceeecC-ChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccc
Confidence             00   001356788998876422222333344333 22221 11111111111111111       1110000      


Q ss_pred             --------cCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          219 --------QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       219 --------~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                              .....++++++|++.++++|++.+.+  ++|++|++|++|..+ ++++ .|++ +| ++.||+||+++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~~-~v~~~~g-~~~ad~vV~a~p~  287 (475)
T 3lov_A          215 PQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE-DGRY-RLKTDHG-PEYADYVLLTIPH  287 (475)
T ss_dssp             ----------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE-TTEE-EEECTTC-CEEESEEEECSCH
T ss_pred             cccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe-CCEE-EEEECCC-eEECCEEEECCCH
Confidence                    01346789999999999999987754  799999999999984 6665 4666 67 8999999998754

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.82  E-value=2.3e-19  Score=175.68  Aligned_cols=307  Identities=12%  Similarity=0.106  Sum_probs=169.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCC-CeEEEeccCCCCCCccccc-chHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSL-NLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~GG~~~t~-~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~   80 (419)
                      +.+||+|||||++||+||++|+++| .+|+|+|+++.+||++++. ..                    .++.+|.|++.+
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~--------------------~g~~~~~g~~~~   67 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDE--------------------NGFTWDLGGHVI   67 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECT--------------------TSCEEESSCCCB
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecC--------------------CCcEEeeCCccc
Confidence            4589999999999999999999999 7999999999999999985 32                    279999999998


Q ss_pred             ecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccc
Q 014768           81 IANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (419)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (419)
                      ....+.+..+++.-+.++...  ....+.+.+|+.+.+|.+..  +. . +.  .......+..++.... ..+      
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~g~~~~~P~~~~--~~-~-l~--~~~~~~~~~~ll~~~~-~~~------  132 (484)
T 4dsg_A           68 FSHYQYFDDVMDWAVQGWNVL--QRESWVWVRGRWVPYPFQNN--IH-R-LP--EQDRKRCLDELVRSHA-RTY------  132 (484)
T ss_dssp             CCSBHHHHHHHHHHCSCEEEE--ECCCEEEETTEEEESSGGGC--GG-G-SC--HHHHHHHHHHHHHHHH-CCC------
T ss_pred             ccChHHHHHHHHHHhhhhhhc--cCceEEEECCEEEEeCccch--hh-h-CC--HHHHHHHHHHHHHHHh-ccC------
Confidence            766554444443222332221  12345567888888873211  11 1 11  1111111222222100 001      


Q ss_pred             cCCcccHHHHHHHcCCChhH-HHHHHHHH-hhccC------CCC----CCCc-HHHHHHHHHHHHHHhh--hccCCCeEE
Q 014768          161 DLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRD------DRY----LNEP-ALDTVKRMKLYAESIA--RFQGGSPYI  225 (419)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~------~~~----~~~~-~~~~~~~~~~~~~~~~--~~~g~~~~~  225 (419)
                      .....++.+|+.+. +...+ ..++.+.. ..+..      ..+    +..+ ....+   ...+....  .+.....+.
T Consensus       133 ~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~---~~~~~~~~~~~~~~~~~f~  208 (484)
T 4dsg_A          133 TEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIR---RNIQENRDDLGWGPNATFR  208 (484)
T ss_dssp             SSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHH---HHHHHTCCCCCCSTTSEEE
T ss_pred             CCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHH---HHHhhcccccCCCccceEE
Confidence            12456788877654 21111 11111111 11110      001    1111 11111   11111000  010134577


Q ss_pred             Eec-CCcCcHHHHHHHHHHHcCcEEEcC--CccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC--ccc-------
Q 014768          226 YPL-YGLGELPQAFARLSAVYGGTYMLN--KPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP--NKV-------  292 (419)
Q Consensus       226 ~p~-gG~~~l~~al~~~~~~~G~~i~~~--~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~--~~~-------  292 (419)
                      ||. ||++.++++|++.+.+.  +|+++  ++|++|.. ++++   |++ +|+++.||+||+++....  +.+       
T Consensus       209 yp~~gG~~~l~~~la~~l~~~--~i~~~~~~~V~~I~~-~~~~---v~~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~  282 (484)
T 4dsg_A          209 FPQRGGTGIIYQAIKEKLPSE--KLTFNSGFQAIAIDA-DAKT---ITFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKG  282 (484)
T ss_dssp             EESSSCTHHHHHHHHHHSCGG--GEEECGGGCEEEEET-TTTE---EEETTSCEEECSEEEECSCHHHHHHHEECSSCTT
T ss_pred             eecCCCHHHHHHHHHhhhhhC--eEEECCCceeEEEEe-cCCE---EEECCCCEEECCEEEECCCHHHHHHHhhccCCCC
Confidence            886 89999999999877542  78999  56999997 3664   334 788999999999884320  001       


Q ss_pred             cc----------cCeeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCC-ccccCCCcEEEEEEeec
Q 014768          293 RK----------VGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYS-HNVAPKGKFIAFVSTEA  358 (419)
Q Consensus       293 ~~----------~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~-~~~aP~G~~~l~~~~~~  358 (419)
                      +.          +..+......++.+.+. +....+++++|+.+.   +...+..+|.. |.+||+|++++++....
T Consensus       283 ~~~~~~~l~~l~y~s~~~v~l~~~~~~~~-~~~~~~~i~vp~~~~---~~~ri~~~s~~~p~~ap~g~~~l~~e~~~  355 (484)
T 4dsg_A          283 YDEWPAIADKMVYSSTNVIGIGVKGTPPP-HLKTACWLYFPEDTS---PFYRATVFSNYSKYNVPEGHWSLMLEVSE  355 (484)
T ss_dssp             GGGHHHHHHHCCEEEEEEEEEEEESCCCG-GGTTCCEEECCSTTC---SCSEEECGGGTCGGGSCTTEEEEEEEEEE
T ss_pred             CHHHHHHHhCCCcCceEEEEEEEcCCCcc-cCCCCeEEEEEcCCC---eEEEEEeecCCCcccCCCCeEEEEEEEec
Confidence            00          01111111223333211 001234666776543   34456667776 89999999998877654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.82  E-value=7.2e-20  Score=176.91  Aligned_cols=247  Identities=14%  Similarity=0.114  Sum_probs=141.7

Q ss_pred             CCcceEEEECCCchHHHHhhccccCC-CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~   80 (419)
                      ++++||+|||||++||+||++|+++| ++|+|+|+++++||+++|.+.+                    ++.+|.|++++
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~--------------------G~~~d~G~~~~   63 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYH--------------------GRRYEMGAIMG   63 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEET--------------------TEECCSSCCCB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCC--------------------CcccccCceee
Confidence            35789999999999999999999999 9999999999999999998643                    68899999988


Q ss_pred             ecCch-hhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcc-cCCCC-cc
Q 014768           81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD-ENDPK-TH  157 (419)
Q Consensus        81 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~  157 (419)
                      ....+ +.+++.+.++.-.  .......+.+.+|... .+..+......     + ...+.++...+.... ..... ..
T Consensus        64 ~~~~~~~~~l~~~~g~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~-----~-~~~~~~l~~~~~~~~~~~~~~~~~  134 (424)
T 2b9w_A           64 VPSYDTIQEIMDRTGDKVD--GPKLRREFLHEDGEIY-VPEKDPVRGPQ-----V-MAAVQKLGQLLATKYQGYDANGHY  134 (424)
T ss_dssp             CTTCHHHHHHHHHHCCCCC--SCCCCEEEECTTSCEE-CGGGCTTHHHH-----H-HHHHHHHHHHHHTTTTTTTSSSSS
T ss_pred             cCCcHHHHHHHHHhCCccc--cccccceeEcCCCCEe-ccccCcccchh-----H-HHHHHHHHHHHhhhhhhcccccch
Confidence            76544 4444444555421  1111122334456543 22111100000     0 012233333332211 00000 00


Q ss_pred             c-cccCCcccHHHHHHHcCCChhHHHHH-HHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHH
Q 014768          158 E-GMDLTRVTTRELIAKYGLDDNTIDFI-GHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELP  235 (419)
Q Consensus       158 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~  235 (419)
                      . .......++.+|+++.+.+. +.+.+ .+....... +....++...+..+... . +..+ ...+.+.+.+|+++++
T Consensus       135 ~~~~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~-~-~~~~-~~~~~~~~~~g~~~l~  209 (424)
T 2b9w_A          135 NKVHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYG-HFDNVPAAYVLKYLDFV-T-MMSF-AKGDLWTWADGTQAMF  209 (424)
T ss_dssp             SCCCGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHH-H-HHHH-HHTCCBCCTTCHHHHH
T ss_pred             hhhhhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccC-ChHhcCHHHHHHhhhHh-h-hhcc-cCCceEEeCChHHHHH
Confidence            0 01123578999999887754 33322 211111111 11122322222111110 0 1111 1112347789999999


Q ss_pred             HHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768          236 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (419)
Q Consensus       236 ~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~  287 (419)
                      ++|.+.+   +.+|++|++|++|..+ ++++. |+++++++.||+||++++.
T Consensus       210 ~~l~~~l---~~~v~~~~~V~~i~~~-~~~v~-v~~~~g~~~ad~Vv~a~~~  256 (424)
T 2b9w_A          210 EHLNATL---EHPAERNVDITRITRE-DGKVH-IHTTDWDRESDVLVLTVPL  256 (424)
T ss_dssp             HHHHHHS---SSCCBCSCCEEEEECC-TTCEE-EEESSCEEEESEEEECSCH
T ss_pred             HHHHHhh---cceEEcCCEEEEEEEE-CCEEE-EEECCCeEEcCEEEECCCH
Confidence            9998665   6689999999999984 67765 7774345999999998754

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.79  E-value=6.9e-19  Score=174.19  Aligned_cols=236  Identities=14%  Similarity=0.156  Sum_probs=128.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCC-CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~   81 (419)
                      +.+||||||||++||+||++|+++| ++|+|||+++++||+++|....                   .++.+|+|++++.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~-------------------~G~~~D~G~~~~~   67 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGY-------------------QGRKYDIGASWHH   67 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECG-------------------GGCEEESSCCEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecC-------------------CCcEEecCCeEEe
Confidence            3589999999999999999999999 9999999999999999987531                   1689999999987


Q ss_pred             cC--chhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768           82 AN--GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (419)
Q Consensus        82 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (419)
                      ..  .++.+++.+.++...      ...+.+.+|..+.++.. ...........+. .....+.++.........     
T Consensus        68 ~~~~~~~~~~~~~lg~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----  134 (516)
T 1rsg_A           68 DTLTNPLFLEEAQLSLNDG------RTRFVFDDDNFIYIDEE-RGRVDHDKELLLE-IVDNEMSKFAELEFHQHL-----  134 (516)
T ss_dssp             CTTTCHHHHHHHHHHHHHC------CCCEECCCCCCEEEETT-TEECTTCTTTCHH-HHHHHHHHHHHHHC---------
T ss_pred             cCCCChHHHHHHHhCCCCc------ceeEEECCCCEEEEcCC-CccccccHHHHHH-HHHHHHHHHHHHHhhhcc-----
Confidence            43  455665555444211      01112223332222211 1111000000011 111122222221111000     


Q ss_pred             ccCCcccHHHHHHHc------CCChhHHHHHHHHHh---hccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCC
Q 014768          160 MDLTRVTTRELIAKY------GLDDNTIDFIGHALA---LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (419)
Q Consensus       160 ~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG  230 (419)
                       .....++.+++.++      .+.+....++...+.   .+........+...          .+....+  ...+++| 
T Consensus       135 -~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~----------~~~~~~~--~~~~~~g-  200 (516)
T 1rsg_A          135 -GVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKD----------TYFGHQG--RNAFALN-  200 (516)
T ss_dssp             ----CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCTTTSBHHH----------HCCCCSS--CCEEESC-
T ss_pred             -CCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCChHHCChHH----------HHhhccC--cchhhhC-
Confidence             12346677765432      122221222221111   11111111111110          0111212  2246777 


Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                      ++.|+++|++.+.  +++|++|++|++|..+ ++..+.|++ +|++++||+||++++.
T Consensus       201 ~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~v~v~~~~g~~~~ad~VI~t~p~  255 (516)
T 1rsg_A          201 YDSVVQRIAQSFP--QNWLKLSCEVKSITRE-PSKNVTVNCEDGTVYNADYVIITVPQ  255 (516)
T ss_dssp             HHHHHHHHHTTSC--GGGEETTCCEEEEEEC-TTSCEEEEETTSCEEEEEEEEECCCH
T ss_pred             HHHHHHHHHHhCC--CCEEEECCEEEEEEEc-CCCeEEEEECCCcEEECCEEEECCCH
Confidence            8889888877654  3679999999999983 343356776 7888999999998853

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.78  E-value=2e-18  Score=167.11  Aligned_cols=247  Identities=17%  Similarity=0.127  Sum_probs=138.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC-
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~-   83 (419)
                      +||||||||++||+||+.|+++|++|+|||+++++||++.+.+.+                 -..++.+|.|++++... 
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~-----------------cipg~~~~~g~~~~~~~~   64 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESR-----------------NVPGLRVEIGGAYLHRKH   64 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECS-----------------SSTTCEEESSCCCBCTTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceecc-----------------CCCCceEecCCeeeCCCC
Confidence            799999999999999999999999999999999999999876531                 01157789999888654 


Q ss_pred             c-hhhHHHHhcCCcceeeEEEecceeE--EeCCeEEEe-cCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768           84 G-ALVRVLIHTDVTKYLYFKAVDGSFV--YNKGKVHKV-PATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (419)
Q Consensus        84 ~-~~~~~l~~~~~~~~~~~~~~~~~~~--~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (419)
                      . .+.+.+.+.++....  ...+....  +.++..... +.. ....     ..+ .....++......+....+.....
T Consensus        65 ~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~-~~~~~~l~~~~~~~~~~~~~~~~~  135 (431)
T 3k7m_X           65 HPRLAAELDRYGIPTAA--ASEFTSFRHRLGPTAVDQAFPIP-GSEA-----VAV-EAATYTLLRDAHRIDLEKGLENQD  135 (431)
T ss_dssp             CHHHHHHHHHHTCCEEE--CCCCCEECCBSCTTCCSSSSCCC-GGGH-----HHH-HHHHHHHHHHHTTCCTTTCTTSSS
T ss_pred             cHHHHHHHHHhCCeeee--cCCCCcEEEEecCCeecCCCCCC-HHHH-----HHH-HHHHHHHHHHHHhcCCCCCccCcc
Confidence            3 344555555554211  11111111  112211110 000 0000     001 122333443333332111111111


Q ss_pred             c-cCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhh-ccCCCeEEEecCCcCcHHHH
Q 014768          160 M-DLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR-FQGGSPYIYPLYGLGELPQA  237 (419)
Q Consensus       160 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~p~gG~~~l~~a  237 (419)
                      . .++ .++.+++...+.++....++...............+....+..+...-..+.. ..+. .. .+.+|+..++++
T Consensus       136 ~~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~g~~~l~~~  212 (431)
T 3k7m_X          136 LEDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSL-DE-VFSNGSADLVDA  212 (431)
T ss_dssp             CGGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTC-CE-EETTCTHHHHHH
T ss_pred             hhhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecch-hh-hcCCcHHHHHHH
Confidence            1 233 78889998887777766655433322222222122333322221111000000 1011 22 778999888887


Q ss_pred             HHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          238 FARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       238 l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      +.+   +.| +|++|++|++|..+ +++++ |++ +|++++||+||++++
T Consensus       213 ~~~---~~g-~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~vi~a~~  256 (431)
T 3k7m_X          213 MSQ---EIP-EIRLQTVVTGIDQS-GDVVN-VTVKDGHAFQAHSVIVATP  256 (431)
T ss_dssp             HHT---TCS-CEESSCCEEEEECS-SSSEE-EEETTSCCEEEEEEEECSC
T ss_pred             HHh---hCC-ceEeCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecC
Confidence            764   447 99999999999974 66664 666 788899999999886

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.75  E-value=2e-17  Score=154.93  Aligned_cols=242  Identities=11%  Similarity=0.171  Sum_probs=134.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccC-CCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~-~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~   81 (419)
                      ..+||+|||||++||+||+.|+++|++|+|+|++ +.+||++.+.....       +  .+..+ ...++.+|.|++++.
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~-------~--~~~~~-~~~~~~~e~G~~~~~  112 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKK-------G--EPSPF-ADPAQYAEAGAMRLP  112 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCT-------T--SCCSS-SSTTCCEESSCCCEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccc-------c--ccccc-cCCCcEEecCceeec
Confidence            4689999999999999999999999999999999 99999999875210       0  00000 023678899998886


Q ss_pred             cCch-hhHHHHhcCCcceeeEEEe-----------------------------------------cceeEEeCCeEEEec
Q 014768           82 ANGA-LVRVLIHTDVTKYLYFKAV-----------------------------------------DGSFVYNKGKVHKVP  119 (419)
Q Consensus        82 ~~~~-~~~~l~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~g~~~~~~  119 (419)
                      .... +.+.+.+.++.....+..-                                         ...+.+.+|......
T Consensus       113 ~~~~~~~~~~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~~  192 (376)
T 2e1m_A          113 SFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRA  192 (376)
T ss_dssp             TTCHHHHHHHHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEHH
T ss_pred             chHHHHHHHHHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceeccc
Confidence            6554 3444445677654321110                                         111233344433211


Q ss_pred             C--Chhhhhc----c-------CCCChHhHHHHHHHHHHHhhcccC-------CC---Ccccc--ccCCcccHHHHHH-H
Q 014768          120 A--TDMEALK----S-------PLMGIFEKRRARKFFIYVQDYDEN-------DP---KTHEG--MDLTRVTTRELIA-K  173 (419)
Q Consensus       120 ~--~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~--~~~~~~~~~~~~~-~  173 (419)
                      .  .....+.    -       .+..++ .+.+.+|...+......       .+   ..+..  .+++..|+.+|++ .
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~S~~~~L~~~  271 (376)
T 2e1m_A          193 QYATDPSSINEGFHLTGCETRLTVSDMV-NQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLREY  271 (376)
T ss_dssp             HHHHCTHHHHHHTTCCGGGGGSCHHHHH-HHHHHHHHHHHEEEETTTEEEECCHHHHHHHHHHHHHHHTTCBHHHHHHHT
T ss_pred             ccccCHHHhccccCCchhhcccCHHHHH-HHHHHHHHHhhhhccccccccccccchhhccchHHHHHHhCCCHHHHHhhc
Confidence            0  0011110    0       000011 12233343333210000       00   00000  0346889999998 7


Q ss_pred             cCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCC
Q 014768          174 YGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNK  253 (419)
Q Consensus       174 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~  253 (419)
                      .++++..++++.....   ............+      .. ...+.....++.+.||++.|+++|++.+   +.+|++|+
T Consensus       272 ~g~s~~~~~~~~~~~~---~~~~~~~s~l~~l------~~-~~~~~~~~~~~~i~GG~~~l~~~l~~~l---~~~i~l~~  338 (376)
T 2e1m_A          272 AEFSDEAVEAIGTIEN---MTSRLHLAFFHSF------LG-RSDIDPRATYWEIEGGSRMLPETLAKDL---RDQIVMGQ  338 (376)
T ss_dssp             SCCCHHHHHHHHHHTT---CTTTTTSBHHHHH------HH-CSCSCTTCCEEEETTCTTHHHHHHHHHG---GGTEECSE
T ss_pred             cCCCHHHHHHHHhhcC---ccccchhhHHHHH------HH-hhhhccCCceEEECCcHHHHHHHHHHhc---CCcEEecC
Confidence            8888887776543321   1111111222221      11 1122235568899999999999999876   56899999


Q ss_pred             ccceEEEcCCCcEEEE
Q 014768          254 PECKVEFDEEGKVVGV  269 (419)
Q Consensus       254 ~V~~I~~~~~~~v~gV  269 (419)
                      +|++|..+ ++.+..+
T Consensus       339 ~V~~I~~~-~~gv~v~  353 (376)
T 2e1m_A          339 RMVRLEYY-DPGRDGH  353 (376)
T ss_dssp             EEEEEEEC-CCC----
T ss_pred             eEEEEEEC-CCceEEE
Confidence            99999985 5544333

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.74  E-value=9.2e-20  Score=174.27  Aligned_cols=234  Identities=15%  Similarity=0.134  Sum_probs=131.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccC-CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEE-ccCcc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPK   78 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~-d~gp~   78 (419)
                      |++++||+|||||++||+||++|+++ |++|+|+|+++++||++++....                  ..++.+ +.|++
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~------------------~~g~~~~~~G~~   65 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEP------------------QTGIEVHKYGAH   65 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECT------------------TTCCEEETTSCC
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeecccc------------------CCCEEEEeCCCc
Confidence            44579999999999999999999999 99999999999999999987531                  016777 48999


Q ss_pred             eeecCch-hhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCCh--hhhhccCCCChHhHHHHHHHHHHHhhcccCCCC
Q 014768           79 FIIANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--MEALKSPLMGIFEKRRARKFFIYVQDYDENDPK  155 (419)
Q Consensus        79 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (419)
                      ++....+ +.+.+.+.++...  +  ....+.+.+|+.+.+|.+.  ...+.....   .+..+.+++......  . . 
T Consensus        66 ~~~~~~~~~~~~~~~~g~~~~--~--~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~---~~~~~~~~l~~~~~~--~-~-  134 (399)
T 1v0j_A           66 LFHTSNKRVWDYVRQFTDFTD--Y--RHRVFAMHNGQAYQFPMGLGLVSQFFGKYF---TPEQARQLIAEQAAE--I-D-  134 (399)
T ss_dssp             CEEESCHHHHHHHTTTCCBCC--C--CCCEEEEETTEEEEESSSHHHHHHHHTSCC---CHHHHHHHHHHHGGG--S-C-
T ss_pred             EEcCCcHHHHHHHHHhhhhhc--c--ccceEEEECCEEEeCCCCHHHHHHHhcccC---CHHHHHHHHHHHhhc--c-C-
Confidence            9876543 4454444454211  1  1223445688888888542  112211111   123333232221111  0 0 


Q ss_pred             ccccccCCcccHHHHHHHcCCChhH-HHHHHHHH-hhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEE-EecCCcC
Q 014768          156 THEGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI-YPLYGLG  232 (419)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~p~gG~~  232 (419)
                           .....++.+|+.+. +...+ ..++.+.. ..+..+ ...-++... .++.........+ ....+. +|+||++
T Consensus       135 -----~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~~~~-~~~ls~~~~-~~~~~~~~~~~~~-~~~~~~~~p~gG~~  205 (399)
T 1v0j_A          135 -----TADAQNLEEKAISL-IGRPLYEAFVKGYTAKQWQTD-PKELPAANI-TRLPVRYTFDNRY-FSDTYEGLPTDGYT  205 (399)
T ss_dssp             -----TTC----CCHHHHH-HCHHHHHHHTHHHHHHHHTSC-GGGSCGGGC-SCCCCCSSSCCCS-CCCSEEECBTTHHH
T ss_pred             -----CCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhcCCC-hhhcChHhh-hcceeEeccccch-hhhhhcccccccHH
Confidence                 01346677777653 33333 33333322 222211 101111100 0000000000011 122353 9999999


Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEE-EcCEEEeCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETA-KCKKVVCDPS  286 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i-~ad~VV~~~~  286 (419)
                      +++++|++   +.|++|++|++|++|.. +      |  +  ++ .||+||+++.
T Consensus       206 ~l~~~l~~---~~g~~I~l~~~V~~I~~-~------v--~--~~~~aD~VI~t~p  246 (399)
T 1v0j_A          206 AWLQNMAA---DHRIEVRLNTDWFDVRG-Q------L--R--PGSPAAPVVYTGP  246 (399)
T ss_dssp             HHHHHHTC---STTEEEECSCCHHHHHH-H------H--T--TTSTTCCEEECSC
T ss_pred             HHHHHHHh---cCCeEEEECCchhhhhh-h------h--h--hcccCCEEEECCc
Confidence            99999986   45899999999999864 1      2  1  45 7999999884

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.74  E-value=5.3e-17  Score=160.11  Aligned_cols=246  Identities=19%  Similarity=0.246  Sum_probs=138.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~   82 (419)
                      ..+||+|||||++||+||..|+++|++|+|+|+++++||++.+....                  ..++.+|+|++++..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~------------------~~~~~~~~g~~~~~~   93 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNE------------------EAGWYANLGPMRLPE   93 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEET------------------TTTEEEESSCCCEET
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccC------------------CCCchhhcCcccccc
Confidence            35799999999999999999999999999999999999999876421                  126889999998876


Q ss_pred             CchhhH-HHHhcCCcceeeEEEec-ceeEEeCCeEEEecC--ChhhhhccCC------CC---hHhHHHHHHHHHHHhhc
Q 014768           83 NGALVR-VLIHTDVTKYLYFKAVD-GSFVYNKGKVHKVPA--TDMEALKSPL------MG---IFEKRRARKFFIYVQDY  149 (419)
Q Consensus        83 ~~~~~~-~l~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~--~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~  149 (419)
                      ....+. ++.+.++... .+...+ ..+.+.+|.....+.  .....+...+      ..   ++. ..+.++...+...
T Consensus        94 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  171 (498)
T 2iid_A           94 KHRIVREYIRKFDLRLN-EFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYE-ESLGKVVEELKRT  171 (498)
T ss_dssp             TCHHHHHHHHHTTCCEE-EECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHH-HHTHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhCCCce-eecccCCccEEEeCCeeecccccccCccccccCCCccccCCCHHHHHH-HHHHHHHHHHhhc
Confidence            554444 4444565421 121111 122333444332210  0001111000      00   000 1111222211111


Q ss_pred             ccCCCCccccccCCcccHHHHHHHcC-CChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEec
Q 014768          150 DENDPKTHEGMDLTRVTTRELIAKYG-LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL  228 (419)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~  228 (419)
                      ..  .....  .+...++.+|+...+ ++......+...+..  ...+. ......+..       ...+.....+++++
T Consensus       172 ~~--~~~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~  237 (498)
T 2iid_A          172 NC--SYILN--KYDTYSTKEYLIKEGDLSPGAVDMIGDLLNE--DSGYY-VSFIESLKH-------DDIFAYEKRFDEIV  237 (498)
T ss_dssp             CH--HHHHH--HHTTSBHHHHHHHTSCCCHHHHHHHHHHTTC--GGGTT-SBHHHHHHH-------HHHHTTCCCEEEET
T ss_pred             cH--HHHHH--HhhhhhHHHHHHHccCCCHHHHHHHHHhcCc--ccchh-HHHHHHHHH-------HhccccCcceEEeC
Confidence            00  00000  124567888888765 455544433322211  00011 111111111       01111234577999


Q ss_pred             CCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe----EEEcCEEEeCCCC
Q 014768          229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE----TAKCKKVVCDPSY  287 (419)
Q Consensus       229 gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~----~i~ad~VV~~~~~  287 (419)
                      ||++.|+++|++.+..   +|++|++|++|..+ ++++ .|++ +|+    +++||+||++.+.
T Consensus       238 gG~~~l~~~l~~~l~~---~i~~~~~V~~I~~~-~~~v-~v~~~~~~~~~~~~~ad~vI~t~p~  296 (498)
T 2iid_A          238 DGMDKLPTAMYRDIQD---KVHFNAQVIKIQQN-DQKV-TVVYETLSKETPSVTADYVIVCTTS  296 (498)
T ss_dssp             TCTTHHHHHHHHHTGG---GEESSCEEEEEEEC-SSCE-EEEEECSSSCCCEEEESEEEECSCH
T ss_pred             CcHHHHHHHHHHhccc---ccccCCEEEEEEEC-CCeE-EEEEecCCcccceEEeCEEEECCCh
Confidence            9999999999987753   79999999999984 6665 4544 554    5899999998854

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.74  E-value=2.8e-17  Score=161.74  Aligned_cols=265  Identities=12%  Similarity=0.069  Sum_probs=134.9

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~   81 (419)
                      ++.+||+|||||++||+||+.|+++|++|+|||+++++||++++....+   .+...+..........++.+|.|++.+.
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGS---EETDLSGETQKCTFSEGHFYNVGATRIP   85 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTC---EEECTTSCEEECCCCTTCEEESSCCCEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCc---ccccccchhhhhcccCCCcCCcchhhcc
Confidence            3568999999999999999999999999999999999999998875320   0000000000000113577899998887


Q ss_pred             cCchhhHHHHhcCCcceeeEEEec-ceeEE-eC-----CeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCC
Q 014768           82 ANGALVRVLIHTDVTKYLYFKAVD-GSFVY-NK-----GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP  154 (419)
Q Consensus        82 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~-~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (419)
                      ....+.+.+.+.++... .+...+ ..+.+ .+     |..+.++.. ...+.       .  .+..++...........
T Consensus        86 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-------~--~~~~l~~~~~~~~~~~~  154 (489)
T 2jae_A           86 QSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAA-KADTF-------G--YMSELLKKATDQGALDQ  154 (489)
T ss_dssp             TTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHH-HHHHH-------H--HHHHHHHHHHHHTTTTT
T ss_pred             cHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHH-hhhhh-------c--cHHHHHHHHHhcccccc
Confidence            65566666666676521 111111 12333 33     444433211 00000       0  01111111111000000


Q ss_pred             CccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCC----CCCC----C-cHHHHHHH-HHHHHHHhhhccCCCeE
Q 014768          155 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD----RYLN----E-PALDTVKR-MKLYAESIARFQGGSPY  224 (419)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~----~-~~~~~~~~-~~~~~~~~~~~~g~~~~  224 (419)
                      . ..  .....++.+|+++++-......+-......+...    ....    . ........ +..++...........+
T Consensus       155 ~-~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (489)
T 2jae_A          155 V-LS--REDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMM  231 (489)
T ss_dssp             T-SC--HHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGGGCTTTSSSE
T ss_pred             c-cc--hhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhhhccccCccE
Confidence            0 00  0112355666654321000000000000000000    0000    0 11111000 00000000011123467


Q ss_pred             EEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC---eEEEcCEEEeCCCC
Q 014768          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPSY  287 (419)
Q Consensus       225 ~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g---~~i~ad~VV~~~~~  287 (419)
                      ++++||++.|+++|++.+.+  ++|++|++|++|..+ ++++. |++ +|   ++++||+||++...
T Consensus       232 ~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~~~~ad~vI~a~p~  294 (489)
T 2jae_A          232 FTPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNV-SEGVT-VEYTAGGSKKSITADYAICTIPP  294 (489)
T ss_dssp             EEETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEE-TTEEE-EEEEETTEEEEEEESEEEECSCH
T ss_pred             EeecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEc-CCeEE-EEEecCCeEEEEECCEEEECCCH
Confidence            89999999999999987732  789999999999984 77665 544 55   68999999998843

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.70  E-value=8e-17  Score=157.67  Aligned_cols=242  Identities=14%  Similarity=0.145  Sum_probs=131.7

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcce
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~   79 (419)
                      |.+.+||+|||||++||++|+.|+++|+ +|+|+|+++.+||++++....                    ++.+|+|+++
T Consensus         1 ~~~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~--------------------~~~~d~g~~~   60 (472)
T 1b37_A            1 ATVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFA--------------------GINVELGANW   60 (472)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEET--------------------TEEEESSCCE
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccC--------------------CcEEeeCCeE
Confidence            3567899999999999999999999998 899999999999999987643                    6899999999


Q ss_pred             eec-----CchhhHHHHh-cCCcceeeEEEecc--eeEE-eCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcc
Q 014768           80 IIA-----NGALVRVLIH-TDVTKYLYFKAVDG--SFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD  150 (419)
Q Consensus        80 ~~~-----~~~~~~~l~~-~~~~~~~~~~~~~~--~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (419)
                      +..     ..++.+++.+ .++....  ...+.  .+.+ .+|..+..+     .... .....  ..+..+...+....
T Consensus        61 ~~~~~~~~~~~~~~~~~~~lgl~~~~--~~~~~~~~~~~~~~g~~~~~~-----~~~~-~~~~~--~~~~~~~~~~~~~~  130 (472)
T 1b37_A           61 VEGVNGGKMNPIWPIVNSTLKLRNFR--SDFDYLAQNVYKEDGGVYDED-----YVQK-RIELA--DSVEEMGEKLSATL  130 (472)
T ss_dssp             EEEESSSSCCTHHHHHHTTSCCCEEE--CCCTTGGGCEECSSSSBCCHH-----HHHH-HHHHH--HHHHHHHHHHHHTS
T ss_pred             EeccCCCCCCHHHHHHHhhcCCceee--ccCccccceeEcCCCCCCCHH-----HHHH-HHHHH--HHHHHHHHHHHHhh
Confidence            872     2346666665 5665321  11111  1222 244332211     1100 00000  11222222221111


Q ss_pred             cCCCCccccccCCcccHHH--HHHHcCC---ChhHHHHHHHHH-hhccCCCCCCCcHHHHHHHHHHHHHHhhhccCC-Ce
Q 014768          151 ENDPKTHEGMDLTRVTTRE--LIAKYGL---DDNTIDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGG-SP  223 (419)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~  223 (419)
                        .+.     .....++.+  ++.....   ......++.... ................. ....    +..+ +. .-
T Consensus       131 --~~~-----~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~----~~~~-~~~~~  197 (472)
T 1b37_A          131 --HAS-----GRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTV-PLAT----FSDF-GDDVY  197 (472)
T ss_dssp             --CTT-----CTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTS-SCHH----HHHH-CSEEE
T ss_pred             --ccc-----cchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhcc-cccc----cccc-CCcee
Confidence              000     112333332  3333221   111122222211 00000000000000000 0000    1112 21 12


Q ss_pred             EEEecCCcCcHHHHHHHHHHHc--------CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          224 YIYPLYGLGELPQAFARLSAVY--------GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       224 ~~~p~gG~~~l~~al~~~~~~~--------G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                      +..++||++.++++|++.+.+.        |++|+++++|++|..+ +++++ |++ +|++++||+||++.+.
T Consensus       198 ~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          198 FVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS-PGGVT-VKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             EECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC-SSCEE-EEETTSCEEEESEEEECSCH
T ss_pred             eeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc-CCcEE-EEECCCCEEEcCEEEEecCH
Confidence            3345899999999999887665        7899999999999984 77765 666 7889999999998754

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.70  E-value=1.8e-17  Score=157.38  Aligned_cols=228  Identities=13%  Similarity=0.127  Sum_probs=133.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEE-ccCcce
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKF   79 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~-d~gp~~   79 (419)
                      |+ ++||+|||||++||++|+.|+++|++|+|+|+++.+||++++....                  ..++.+ |.|+++
T Consensus         1 m~-~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~------------------~~g~~~~~~G~~~   61 (384)
T 2bi7_A            1 MK-SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDS------------------ETNVMVHVYGPHI   61 (384)
T ss_dssp             -C-CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECT------------------TTCCEEETTSCCC
T ss_pred             CC-cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccccccc------------------CCCceEeeCCceE
Confidence            54 5899999999999999999999999999999999999999987531                  125765 999999


Q ss_pred             eecCch-hhHHHHhcCCcceeeEEEec-ceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcc
Q 014768           80 IIANGA-LVRVLIHTDVTKYLYFKAVD-GSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTH  157 (419)
Q Consensus        80 ~~~~~~-~~~~l~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (419)
                      +....+ +.+.+.+.+.     +.+.. ..+.+.+|+.+.+|.+ ...+...+...+.+..+.+++......   .    
T Consensus        62 ~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~g~~~~~P~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~---~----  128 (384)
T 2bi7_A           62 FHTDNETVWNYVNKHAE-----MMPYVNRVKATVNGQVFSLPIN-LHTINQFFSKTCSPDEARALIAEKGDS---T----  128 (384)
T ss_dssp             EEESCHHHHHHHHTTSC-----EEECCCCEEEEETTEEEEESCC-HHHHHHHTTCCCCHHHHHHHHHHHSCC---S----
T ss_pred             ECCCCHHHHHHHHHHhh-----hcccccceEEEECCEEEECCCC-hhHHHHHhcccCCHHHHHHHHHHhhhc---c----
Confidence            986544 4444443442     12222 2234568888888865 333322111111223343343322211   0    


Q ss_pred             ccccCCcccHHHHHHHcCCChhH-HHHHHHHH-hhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEE-EecCCcCcH
Q 014768          158 EGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI-YPLYGLGEL  234 (419)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~p~gG~~~l  234 (419)
                         .....++.+|+.+. +...+ ..++.+.. ..+..+ ..+.+... +.++.........+ ....+. +|+||++++
T Consensus       129 ---~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~~~-~~~ls~~~-~~r~~~~~~~~~~~-~~~~~~~~p~gG~~~l  201 (384)
T 2bi7_A          129 ---IADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQ-PSELPASI-LKRLPVRFNYDDNY-FNHKFQGMPKCGYTQM  201 (384)
T ss_dssp             ---CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSC-GGGSBGGG-CCSCCCCSSSCCCS-CCCSEEEEETTHHHHH
T ss_pred             ---CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhCCC-HHHhCHHH-Hhcccccccccccc-ccccccEEECcCHHHH
Confidence               12467888888765 33433 33333322 222211 10111100 00000000000011 122343 999999999


Q ss_pred             HHHHHHHHHHcCcEEEcCCccc-eEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 014768          235 PQAFARLSAVYGGTYMLNKPEC-KVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (419)
Q Consensus       235 ~~al~~~~~~~G~~i~~~~~V~-~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~  286 (419)
                      +++|++   ..|++|++|++|+ +|..                .||+||+++.
T Consensus       202 ~~~l~~---~~g~~I~l~~~V~~~i~~----------------~~d~VI~a~p  235 (384)
T 2bi7_A          202 IKSILN---HENIKVDLQREFIVEERT----------------HYDHVFYSGP  235 (384)
T ss_dssp             HHHHHC---STTEEEEESCCCCGGGGG----------------GSSEEEECSC
T ss_pred             HHHHHh---cCCCEEEECCeeehhhhc----------------cCCEEEEcCC
Confidence            999986   4589999999999 8752                1899999884

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.69  E-value=2.2e-17  Score=155.97  Aligned_cols=288  Identities=14%  Similarity=0.133  Sum_probs=157.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEE-ccCcceee
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKFII   81 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~-d~gp~~~~   81 (419)
                      ..+||+|||||++||+||+.|+++|++|+|+|+++.+||++.+....                   .++.+ |.|++++.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~-------------------~G~~~~~~G~~~~~   88 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDD-------------------AGVLIHPYGPHIFH   88 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECT-------------------TSCEECTTSCCCCE
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeecc-------------------CCceEeecCCcccC
Confidence            46899999999999999999999999999999999999999976410                   15664 99999998


Q ss_pred             cCch-hhHHHHhcCCcceeeEEE-ecceeEEeCCeEEEecCChhhhhccCCCC-hHhHHHHHHHHHHHhhcccCCCCccc
Q 014768           82 ANGA-LVRVLIHTDVTKYLYFKA-VDGSFVYNKGKVHKVPATDMEALKSPLMG-IFEKRRARKFFIYVQDYDENDPKTHE  158 (419)
Q Consensus        82 ~~~~-~~~~l~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (419)
                      .... +.+.+.+.+.     +.. ....+.+.+|+.+.+|.+ ...+.. +.. .+..+....++.. ...    +    
T Consensus        89 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~~lP~~-~~~~~~-l~~~~~~~~~~~~~l~~-~~~----~----  152 (397)
T 3hdq_A           89 TNSKDVFEYLSRFTE-----WRPYQHRVLASVDGQLLPIPIN-LDTVNR-LYGLNLTSFQVEEFFAS-VAE----K----  152 (397)
T ss_dssp             ESCHHHHHHHHTSCC-----EEECCCBEEEEETTEEEEESCC-HHHHHH-HHTCCCCHHHHHHHHHH-HCC----C----
T ss_pred             CChHHHHHHHHHhhh-----cccccccceEEECCEEEEcCCC-hHHHHH-hhccCCCHHHHHHHHhh-ccc----C----
Confidence            6544 4444443332     222 123345678999999865 322211 100 0122333333331 111    0    


Q ss_pred             cccCCcccHHHHHHHcCCChhHHHHHHHHH-hhccCCCCCCCcHHHHHHHHHHHHHHhhhcc---CCCeE-EEecCCcCc
Q 014768          159 GMDLTRVTTRELIAKYGLDDNTIDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQ---GGSPY-IYPLYGLGE  233 (419)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~-~~p~gG~~~  233 (419)
                        .....++.+|+.+..-......++.+.. ..+..+ ..+-++ ..+.++..    ...+.   -...+ .+|+||+.+
T Consensus       153 --~~~~~s~~e~~~~~~G~~~~e~~~~py~~k~~~~~-~~~Lsa-~~~~Rvp~----~~~~d~~yf~~~~qg~P~gGy~~  224 (397)
T 3hdq_A          153 --VEQVRTSEDVVVSKVGRDLYNKFFRGYTRKQWGLD-PSELDA-SVTARVPT----RTNRDNRYFADTYQAMPLHGYTR  224 (397)
T ss_dssp             --CSSCCBHHHHHHHHHHHHHHHHHTHHHHHHHHSSC-GGGSBT-TTGGGSCC----CSSCCCBSCCCSEEEEETTCHHH
T ss_pred             --CCCCcCHHHHHHHhcCHHHHHHHHHHHhCchhCCC-HHHHHH-HHHHhcCc----ccccCccchhhhheeccCCCHHH
Confidence              1246788888765421222233333322 222211 111111 11111100    00110   02234 379999999


Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCcccc-ccCee-EEEEE----EecC
Q 014768          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVR-KVGRV-ARAIA----IMSH  307 (419)
Q Consensus       234 l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~~-~~~~~-~~~~~----~~~~  307 (419)
                      ++++|++   ..|++|++|++|+++              +..+.+|+||++... +.... ..+.+ .+...    .++.
T Consensus       225 l~e~l~~---~~g~~V~l~~~v~~~--------------~~~~~~d~vI~T~P~-d~~~~~~~g~L~yrsl~~~~~~~~~  286 (397)
T 3hdq_A          225 MFQNMLS---SPNIKVMLNTDYREI--------------ADFIPFQHMIYTGPV-DAFFDFCYGKLPYRSLEFRHETHDT  286 (397)
T ss_dssp             HHHHHTC---STTEEEEESCCGGGT--------------TTTSCEEEEEECSCH-HHHTTTTTCCCCEEEEEEEEEEESS
T ss_pred             HHHHHHh---ccCCEEEECCeEEec--------------cccccCCEEEEcCCH-HHHHHHhcCCCCCceEEEEEEEecc
Confidence            9998864   559999999999843              224568999998832 11110 01111 12221    1222


Q ss_pred             -CCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCC
Q 014768          308 -PIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETD  361 (419)
Q Consensus       308 -~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~  361 (419)
                       .+.     ...++.+++..    +.-.|...+..+.. |.++++|....+++.+
T Consensus       287 ~~~~-----~~~~vn~~d~~----p~tRi~e~k~~~~~-~~~~t~i~~Ey~~~~~  331 (397)
T 3hdq_A          287 EQLL-----PTGTVNYPNDY----AYTRVSEFKHITGQ-RHHQTSVVYEYPRAEG  331 (397)
T ss_dssp             SCSC-----SSSEEECSSSS----SCSEEEEHHHHHCC-CCSSEEEEEEEEESSS
T ss_pred             ccCC-----CCeEEEeCCCC----cceEEEeecccCCC-CCCCEEEEEEECCCCC
Confidence             222     22366676433    33345555544322 4578888887777543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.62  E-value=1.6e-16  Score=149.94  Aligned_cols=227  Identities=15%  Similarity=0.149  Sum_probs=130.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEc-cCcceeec
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVD-MIPKFIIA   82 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d-~gp~~~~~   82 (419)
                      ++||+|||||++||+||++|+++|++|+|+|+++.+||++.+....                    ++.+| .|++++..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~~~~G~~~~~~   60 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCE--------------------GIQIHKYGAHIFHT   60 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEET--------------------TEEEETTSCCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccC--------------------CceeeccCCceecC
Confidence            3799999999999999999999999999999999999999987532                    68885 99999987


Q ss_pred             Cch-hhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccccc
Q 014768           83 NGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (419)
Q Consensus        83 ~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (419)
                      ..+ +.+.+.+.+..  ..+.  .....+.+|+.+.+|.+ ...+...+... .+..+.+++......   ..      .
T Consensus        61 ~~~~~~~~~~~l~~~--~~~~--~~~~~~~~g~~~~~p~~-~~~~~~l~~~~-~~~~~~~~l~~~~~~---~~------~  125 (367)
T 1i8t_A           61 NDKYIWDYVNDLVEF--NRFT--NSPLAIYKDKLFNLPFN-MNTFHQMWGVK-DPQEAQNIINAQKKK---YG------D  125 (367)
T ss_dssp             SCHHHHHHHHTTSCB--CCCC--CCCEEEETTEEEESSBS-HHHHHHHHCCC-CHHHHHHHHHHHTTT---TC------C
T ss_pred             CCHHHHHHHHHhhhh--hhcc--ccceEEECCeEEEcCCC-HHHHHHHhccC-CHHHHHHHHHHHhhc---cC------C
Confidence            643 33333333321  1111  11234557888888754 33322211110 223344444432221   10      0


Q ss_pred             CCcccHHHHHHHcCCChhH-HHHHHHHH-hhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEE-EecCCcCcHHHHH
Q 014768          162 LTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI-YPLYGLGELPQAF  238 (419)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~p~gG~~~l~~al  238 (419)
                      ....++.+|+.+. +...+ ..++.+.. ..+..+ ..+.++... .++......-..+ ....+. +|+||+++++++|
T Consensus       126 ~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~-~~~lsa~~~-~~l~~~~~~~~~~-~~~~~~~~p~gG~~~l~~~l  201 (367)
T 1i8t_A          126 KVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRS-AKELPAFII-KRIPVRFTFDNNY-FSDRYQGIPVGGYTKLIEKM  201 (367)
T ss_dssp             CCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSC-GGGSCTTSS-CCCCBCSSSCCCS-CCCSEEECBTTCHHHHHHHH
T ss_pred             CCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCC-hHHcCHHHH-hhceeeecccccc-ccchhhcccCCCHHHHHHHH
Confidence            1456888888765 33333 23333322 222211 111111000 0000000000001 122343 9999999999999


Q ss_pred             HHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 014768          239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (419)
Q Consensus       239 ~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~  286 (419)
                      ++     |++|++|++|++|..  .     |     .+.||+||++++
T Consensus       202 ~~-----g~~i~l~~~V~~i~~--~-----v-----~~~~D~VV~a~p  232 (367)
T 1i8t_A          202 LE-----GVDVKLGIDFLKDKD--S-----L-----ASKAHRIIYTGP  232 (367)
T ss_dssp             HT-----TSEEECSCCGGGSHH--H-----H-----HTTEEEEEECSC
T ss_pred             hc-----CCEEEeCCceeeech--h-----h-----hccCCEEEEecc
Confidence            86     689999999998852  1     1     246899999884

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.51  E-value=1.8e-13  Score=140.07  Aligned_cols=74  Identities=18%  Similarity=0.229  Sum_probs=59.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec-
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA-   82 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~-   82 (419)
                      .+||+|||||++||+||..|+++|++|+|+|+++.+||++++....                   .++.+|+|++++.. 
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~-------------------~G~~vd~Ga~~i~G~  396 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSF-------------------KGVTVGRGAQIVNGC  396 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCS-------------------TTCCEESSCCEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeecccc-------------------CCeEeccCCeEEeCC
Confidence            4799999999999999999999999999999999999999987521                   26788999988853 


Q ss_pred             -CchhhHHHHhcCCc
Q 014768           83 -NGALVRVLIHTDVT   96 (419)
Q Consensus        83 -~~~~~~~l~~~~~~   96 (419)
                       ..++..++.+.++.
T Consensus       397 ~~np~~~l~~~lGl~  411 (776)
T 4gut_A          397 INNPVALMCEQLGIS  411 (776)
T ss_dssp             TTCHHHHHHHHHTCC
T ss_pred             ccChHHHHHHHhCCc
Confidence             23444544555654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.50  E-value=7.1e-14  Score=131.98  Aligned_cols=58  Identities=10%  Similarity=0.085  Sum_probs=47.8

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--eEEEcCEEEeCCCCCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYLP  289 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g--~~i~ad~VV~~~~~~~  289 (419)
                      ...+.++|.+.+++.|++|+++++|++|+.+ +++.+.|++ +|  .+++||.||.+++.+.
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVR-PEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-TTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEc-CCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            3578999999999999999999999999984 555345666 56  4899999999887763

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.47  E-value=5.3e-13  Score=129.23  Aligned_cols=66  Identities=17%  Similarity=0.178  Sum_probs=55.2

Q ss_pred             eEEEecC-C---cCcHHHHHHHHHHHcCcEEEcCC---ccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLY-G---LGELPQAFARLSAVYGGTYMLNK---PECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~g-G---~~~l~~al~~~~~~~G~~i~~~~---~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      +++.+.+ |   ...++++|.+.++++|++|++++   +|++|.. +++++++|++ +|++++||.||++++.+.
T Consensus       148 g~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          148 GYFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             EEEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             EEEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            4455555 4   45799999999999999999999   9999998 4888988988 777999999998876653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.44  E-value=3e-12  Score=131.95  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=54.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      .+||+|||||++||+||+.|+++|++|+|||+++.+||++.++...                    ++.+|+|++++...
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------~~~~~~G~~~~~~~  337 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKG--------------------NYVADLGAMVVTGL  337 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEEET--------------------TEEEESSCCEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeeccc--------------------ccchhcCceEecCC
Confidence            4799999999999999999999999999999999999999887632                    68999999988653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.44  E-value=1.4e-12  Score=123.59  Aligned_cols=64  Identities=14%  Similarity=0.090  Sum_probs=51.8

Q ss_pred             EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      .+++.+|   ...++++|.+.++++|++|+++++|++|..+ +++ ++|++++.++.||.||.+++.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~~g~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGA-WEVRCDAGSYRAAVLVNAAGAWC  209 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTE-EEEECSSEEEEESEEEECCGGGH
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCe-EEEEeCCCEEEcCEEEECCChhH
Confidence            4455555   3679999999999999999999999999984 665 67888555899999999887663

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.44  E-value=1.9e-12  Score=131.37  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=54.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      .+||+|||||++||+||..|+++|++|+|+|+++.+||++.++...                    ++.+|+|++++...
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~--------------------~~~~~~G~~~~~~~  166 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKG--------------------NYVADLGAMVVTGL  166 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEET--------------------TEEEESSCCEECCS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccc--------------------CchhhcCcEEEeCC
Confidence            4799999999999999999999999999999999999999987632                    68899999988653

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.40  E-value=2.8e-13  Score=135.94  Aligned_cols=80  Identities=14%  Similarity=0.084  Sum_probs=60.7

Q ss_pred             cceEEEECCCchHHHHhhccccCC--------CeEEEeccCC-CC----------------CCcccccchHHHHHhhcCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG--------LKVLHMDRND-YY----------------GGESSSLNLIQLWKRFRGN   58 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G--------~~V~vlE~~~-~~----------------GG~~~t~~~~~~~~~~~~~   58 (419)
                      ..+|+|||||++||+||+.|+++|        ++|+|+|+++ ++                ||++.+....        +
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~--------~  127 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVH--------N  127 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEEC--------S
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEcc--------C
Confidence            468999999999999999999999        9999999999 99                9999887531        0


Q ss_pred             CCCCCCCCCCcceEEccCcceeecCch-hhHHHHhc-CCc
Q 014768           59 EQPPAHLGSSRDYNVDMIPKFIIANGA-LVRVLIHT-DVT   96 (419)
Q Consensus        59 ~~~~~~~g~~~~~~~d~gp~~~~~~~~-~~~~l~~~-~~~   96 (419)
                      + .+    ...++.+|+|++++..... +.+.+.+. ++.
T Consensus       128 ~-~~----~~~~~~~e~G~~~~~~~~~~~~~~~~~l~gl~  162 (721)
T 3ayj_A          128 G-DP----ASGDTIYEVGAMRFPEIAGLTWHYASAAFGDA  162 (721)
T ss_dssp             S-CG----GGCSEEEECSCCCEETTCHHHHHHHHHHHCTT
T ss_pred             C-cc----cCCCcEEecCCEEecCccHHHHHHHHHhcCCc
Confidence            0 00    0025889999998876543 44555555 665

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.39  E-value=6.7e-12  Score=127.98  Aligned_cols=65  Identities=15%  Similarity=0.032  Sum_probs=53.0

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      +.++|.+|   ...++++|.+.+++.|++|+++++|++|+.+ ++++ .|++ +|+++.||.||.+++.+.
T Consensus       405 g~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v-~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          405 GITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK-DDCW-LLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCGGGG
T ss_pred             cEEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe-CCeE-EEEECCCCEEECCEEEECCCcch
Confidence            45566665   3679999999999999999999999999984 6764 6777 778899999998876653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.39  E-value=3.3e-12  Score=122.12  Aligned_cols=63  Identities=13%  Similarity=0.037  Sum_probs=50.1

Q ss_pred             EEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768          224 YIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (419)
Q Consensus       224 ~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~  288 (419)
                      ..+|......+.+.|.+.+++.|++|+++++|++|..+ ++. +.|++++++++||.||.+.+.+
T Consensus       124 ~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g~i~ad~VIlAtG~~  186 (417)
T 3v76_A          124 QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT-ASG-FRVTTSAGTVDAASLVVASGGK  186 (417)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETTEEEEESEEEECCCCS
T ss_pred             EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECCcEEEeeEEEECCCCc
Confidence            34565556789999999999999999999999999984 554 4677744489999999877654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.38  E-value=2.6e-12  Score=120.14  Aligned_cols=58  Identities=12%  Similarity=0.229  Sum_probs=48.0

Q ss_pred             EEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          224 YIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       224 ~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      .+.+.+|+..++++|++.+   |++|+++++|++|..+ ++++. |++ +|+++.||.||++..
T Consensus       104 ~~~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~-~~~~~-v~~~~g~~~~ad~vV~A~p  162 (342)
T 3qj4_A          104 NFVAPQGISSIIKHYLKES---GAEVYFRHRVTQINLR-DDKWE-VSKQTGSPEQFDLIVLTMP  162 (342)
T ss_dssp             EEECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEEC-SSSEE-EEESSSCCEEESEEEECSC
T ss_pred             ceecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEc-CCEEE-EEECCCCEEEcCEEEECCC
Confidence            3467899999999998766   8999999999999984 66654 555 777799999998764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.35  E-value=8.3e-12  Score=118.47  Aligned_cols=65  Identities=20%  Similarity=0.159  Sum_probs=53.0

Q ss_pred             EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+..|   ...+.++|.+.+++.|++|+++++|++|..+ ++++++|++++.+++||.||.+++.+.
T Consensus       138 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKGIIKTGIVVNATNAWA  205 (382)
T ss_dssp             EEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTEEEECSEEEECCGGGH
T ss_pred             EEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCcEEECCEEEECcchhH
Confidence            3455555   3578899999999999999999999999984 788888888545899999998887653

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.33  E-value=1.7e-11  Score=127.80  Aligned_cols=65  Identities=20%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.|.+|   ...++++|.+.+++.|++|+++++|++|.. +++++++|.+++.+++||.||.+++.+.
T Consensus       140 ~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          140 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADGVIPADIVVSCAGFWG  207 (830)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             EEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCcEEECCEEEECCccch
Confidence            4455554   247999999999999999999999999998 4788888888555899999999887663

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.32  E-value=1.2e-11  Score=117.81  Aligned_cols=63  Identities=14%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             EecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcC---CCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE---EGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       226 ~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~---~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      +|......+.+.|.+.+++.|++|+++++|++|..++   +++ +.|++++++++||.||.+++..+
T Consensus       103 ~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          103 FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNSTQWQCKNLIVATGGLS  168 (401)
T ss_dssp             EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTEEEEESEEEECCCCSS
T ss_pred             ccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCCEEECCEEEECCCCcc
Confidence            5544446788899999999999999999999998731   344 46667555899999998776543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.31  E-value=2.3e-11  Score=124.21  Aligned_cols=66  Identities=15%  Similarity=0.128  Sum_probs=52.3

Q ss_pred             CeEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe-EEEcCEEEeCCCCCC
Q 014768          222 SPYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLP  289 (419)
Q Consensus       222 ~~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~-~i~ad~VV~~~~~~~  289 (419)
                      .+.++|.+|   ...++++|.+.+++.|++|+++++|++|+.+ ++++ .|++ +|+ ++.||.||.+++.+.
T Consensus       399 gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v-~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          399 DGIHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI-DSQW-QLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             CEEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC-SSSE-EEEEC-CCCCEEESEEEECCGGGT
T ss_pred             ceEEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe-CCeE-EEEeCCCcEEEECCEEEECCCcch
Confidence            345566666   3679999999999999999999999999984 6664 6666 666 899999998876653

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.31  E-value=1.8e-11  Score=116.79  Aligned_cols=64  Identities=22%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~  288 (419)
                      +.+.|.+|   ...+.++|.+.+++.|++|+++++|++|+.+ ++++. |++++.+++||.||.+++.+
T Consensus       141 ~~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~-v~t~~g~i~a~~VV~A~G~~  207 (397)
T 2oln_A          141 GFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD-ADGVS-VTTDRGTYRAGKVVLACGPY  207 (397)
T ss_dssp             EEEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEEE-EEESSCEEEEEEEEECCGGG
T ss_pred             EEEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc-CCeEE-EEECCCEEEcCEEEEcCCcC
Confidence            34455554   2468899999999999999999999999984 66553 66655589999999888665

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.31  E-value=2.3e-11  Score=119.84  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=46.5

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEcC-EEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCK-KVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~--~i~ad-~VV~~~~~~  288 (419)
                      .+.+.|.+.+++.|++|+++++|++|+.++++++++|.+  +++  +++|| .||.+++-+
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~  263 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSF  263 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCCh
Confidence            799999999999999999999999999843689999887  443  58996 888766443

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.31  E-value=1.3e-12  Score=118.03  Aligned_cols=62  Identities=23%  Similarity=0.286  Sum_probs=54.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      ++||+|||||++||+||+.|+++|++|+||||++.+||++++....                    +..+|.|.+.+...
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~--------------------~~~~d~g~~~~~~~   61 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSD--------------------AGALDMGAQYFTAR   61 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEET--------------------TEEEECSCCCBCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccC--------------------CceeecCccccccC
Confidence            4899999999999999999999999999999999999999877543                    67888888777655


Q ss_pred             ch
Q 014768           84 GA   85 (419)
Q Consensus        84 ~~   85 (419)
                      ..
T Consensus        62 ~~   63 (336)
T 3kkj_A           62 DR   63 (336)
T ss_dssp             SH
T ss_pred             cH
Confidence            43

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.30  E-value=3.6e-11  Score=114.92  Aligned_cols=66  Identities=24%  Similarity=0.181  Sum_probs=53.8

Q ss_pred             eEEEecCCcC---cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYGLG---ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG~~---~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      +.+++.+|.-   .+.++|.+.+++.|++++++++|++|..+ ++++++|+++++++.||.||.+++.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          162 ATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRGTIHAGKVALAGAGHS  230 (405)
T ss_dssp             EEEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTCCEEEEEEEECCGGGH
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCceEECCEEEECCchhH
Confidence            4556666644   78999999999999999999999999984 788888888434899999998887653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.26  E-value=1.4e-11  Score=119.31  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=51.7

Q ss_pred             EEecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          225 IYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       225 ~~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .+|..+ ...+.++|.+.+++.|++|+++++|++|..+ ++++++|++ +|++++||.||.+.+..
T Consensus       126 ~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VVlAtGg~  190 (447)
T 2i0z_A          126 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIAVGGK  190 (447)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEECCCCS
T ss_pred             EECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEEECCCCC
Confidence            455433 4678899999999999999999999999984 788788888 67779999999776554

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.23  E-value=4.6e-11  Score=112.86  Aligned_cols=64  Identities=14%  Similarity=0.153  Sum_probs=49.3

Q ss_pred             EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.|..|   ...++++|.+.+++.|++|+++++|++|..+ ++++ .|++++.+++||.||.+++.+.
T Consensus       138 ~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          138 LFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHD-DDGV-TIETADGEYQAKKAIVCAGTWV  204 (372)
T ss_dssp             EEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSSE-EEEESSCEEEEEEEEECCGGGG
T ss_pred             EEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc-CCEE-EEEECCCeEEcCEEEEcCCccH
Confidence            3445444   2578999999999999999999999999984 6654 5666444699999998887653

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.22  E-value=1.5e-11  Score=122.21  Aligned_cols=66  Identities=24%  Similarity=0.245  Sum_probs=53.3

Q ss_pred             eEEEecCC--cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C---C--eEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---G--ETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG--~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~---g--~~i~ad~VV~~~~~~~  289 (419)
                      ++.|+.+-  ...++.+|++.++++|++|+++++|++|.. +++++++|++ +   |  .+++||.||.+++.+.
T Consensus       159 g~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          159 GGIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             EEEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             EEEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            44555432  356899999999999999999999999999 4888888876 2   3  5799999999888764

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.20  E-value=9e-11  Score=111.54  Aligned_cols=56  Identities=9%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.++|.+.+++.|++++++++|++|+.+ ++++ .|++++++++||.||.+++.+.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETANGSYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETTEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCccH
Confidence            578999999999999999999999999984 5554 4667666899999998887653

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.20  E-value=1.1e-10  Score=113.18  Aligned_cols=65  Identities=14%  Similarity=0.181  Sum_probs=51.3

Q ss_pred             EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEE---------------cCCCcEEEEEeCCeEE--EcCEEEe
Q 014768          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEF---------------DEEGKVVGVTSEGETA--KCKKVVC  283 (419)
Q Consensus       224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~---------------~~~~~v~gV~~~g~~i--~ad~VV~  283 (419)
                      .+.+..|   ...+.++|.+.+++.|++|+++++|++|..               + ++++++|++++.++  .||.||.
T Consensus       170 ~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~-~~~v~~V~t~~g~i~~~Ad~VV~  248 (448)
T 3axb_A          170 VLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ-EARASAAVLSDGTRVEVGEKLVV  248 (448)
T ss_dssp             EEESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS-CEEEEEEEETTSCEEEEEEEEEE
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC-CCceEEEEeCCCEEeecCCEEEE
Confidence            4445444   347899999999999999999999999987               4 66777888843378  9999998


Q ss_pred             CCCCCC
Q 014768          284 DPSYLP  289 (419)
Q Consensus       284 ~~~~~~  289 (419)
                      +++.+.
T Consensus       249 AtG~~s  254 (448)
T 3axb_A          249 AAGVWS  254 (448)
T ss_dssp             CCGGGH
T ss_pred             CCCcCH
Confidence            887653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.19  E-value=1.2e-10  Score=116.26  Aligned_cols=62  Identities=21%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             EecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCC-CcEEEEEe---CCe--EEEcCEEEeCCCCC
Q 014768          226 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTS---EGE--TAKCKKVVCDPSYL  288 (419)
Q Consensus       226 ~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~-~~v~gV~~---~g~--~i~ad~VV~~~~~~  288 (419)
                      +|.+|   ...+.+.|.+.+++.|++|+++++|++|+.+ + +++++|++   +|+  ++.||.||.+++-+
T Consensus       241 ~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~  311 (566)
T 1qo8_A          241 RPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN-DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGY  311 (566)
T ss_dssp             ECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC-TTSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred             ecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCc
Confidence            45444   3568899999999999999999999999984 6 88888875   565  68999988766543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.19  E-value=7.1e-10  Score=110.76  Aligned_cols=56  Identities=16%  Similarity=0.102  Sum_probs=46.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCC-CcEEEEEe---CCe--EEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTS---EGE--TAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~-~~v~gV~~---~g~--~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+++.|++|+++++|++|..+ + +++++|.+   +|+  ++.||.||.+++-+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~  316 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKD-DKGTVKGILVKGMYKGYYWVKADAVILATGGF  316 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC-TTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEc-CCCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence            468899999999999999999999999985 5 88888765   565  68999998766543

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.18  E-value=1.4e-10  Score=109.96  Aligned_cols=65  Identities=12%  Similarity=0.067  Sum_probs=52.4

Q ss_pred             eEEEecCCc---CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          223 PYIYPLYGL---GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       223 ~~~~p~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ++++|.+|.   ..+.++|.+.+++.|++++++++|++|..+ ++++ +|+++++++.||.||.+++.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          152 ASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSGDVWANHVVVASGVWS  219 (382)
T ss_dssp             EEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTEEEEEEEEEECCGGGT
T ss_pred             EEEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCceEEcCEEEECCChhH
Confidence            455666663   568999999999999999999999999984 6776 7777555899999998887654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.13  E-value=2e-10  Score=114.42  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~~~~  289 (419)
                      ..++.++++.++++|++|+++++|++|..+ ++++++|++    +|+  +++||.||.+++.+.
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            468888999999999999999999999984 788888874    343  799999999887763

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.09  E-value=1.3e-10  Score=114.16  Aligned_cols=57  Identities=21%  Similarity=0.288  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.|.+.+++.|++|+++++|++|.. +++++++|++ +|+++.||.||.+.+..+
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            45778888888899999999999999998 4888888988 788899999998887765

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.06  E-value=7.5e-10  Score=106.34  Aligned_cols=56  Identities=13%  Similarity=0.173  Sum_probs=42.4

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe--EEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~--~i~ad~VV~~~~~~  288 (419)
                      .+.+.|.+.+++.|++|+++++|++|..++++..+.|.+ +|+  +++||.||.+.+..
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG  165 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence            456667777888899999999999999842333345555 676  69999999877654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.03  E-value=2.5e-09  Score=106.66  Aligned_cols=56  Identities=23%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCC-CcEEEEEe---CCe--EEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTS---EGE--TAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~-~~v~gV~~---~g~--~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+++.|++|+++++|++|+.+ + +++++|.+   +|+  ++.||.||.+++-+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~  316 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILED-ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGF  316 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEEC-CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCC
Confidence            468899999999999999999999999984 6 88888875   464  68999998776543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.01  E-value=2.8e-09  Score=106.24  Aligned_cols=57  Identities=18%  Similarity=0.098  Sum_probs=45.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CC--eEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG--ETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g--~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.|.+.+++.|++++.+++|++|..+ ++.+++|++  +|  .+++||.||.+.+...
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            356677788888899999999999999974 666677776  56  5899999998776543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.01  E-value=2.3e-09  Score=107.05  Aligned_cols=56  Identities=20%  Similarity=0.162  Sum_probs=45.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~~  287 (419)
                      ..+.++|.+.+++.|++|+++++|++|..++++++.+|..    +|+  ++.|+.||.+++-
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            5688999999999999999999999999832678888874    454  6899998876654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.97  E-value=1.7e-09  Score=103.75  Aligned_cols=58  Identities=17%  Similarity=0.173  Sum_probs=51.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.++++|++|+++++|++|.. +++++.+|++ +|+++.||.||++++..|.
T Consensus       194 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          194 EALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence            46788888899999999999999999998 4788888988 8899999999998887653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.95  E-value=5.5e-09  Score=104.55  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~~  287 (419)
                      ..+..+|.+.+.+.|++|+++++|++|..+ ++++.||..    +|+  ++.|+.||.+++-
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  215 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGG  215 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            478999999999999999999999999984 888888865    454  6899998876644

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.90  E-value=4.1e-09  Score=103.86  Aligned_cols=56  Identities=23%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCe--EEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g~--~i~ad~VV~~~~~~~  289 (419)
                      .+.+.|.+.+++.|++|+++++|++|.. +++++.+|++   +|+  +++||.||.+.+...
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            5667778888889999999999999998 4888877765   463  899999998776653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.88  E-value=6.1e-10  Score=105.83  Aligned_cols=41  Identities=29%  Similarity=0.450  Sum_probs=37.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      ++|||+|||||++||+||..|+++|++|+|+||++.+|...
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~   43 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPV   43 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCC
Confidence            46999999999999999999999999999999998887543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.83  E-value=7.7e-09  Score=98.75  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      ...+.+.+.+.+++.|++++++++|++|..+ ++++.+|++ +|+++.||.||++++..|.
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGNTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEEECcCCccC
Confidence            3567888889999999999999999999984 788888988 8889999999998877553

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.82  E-value=6.7e-09  Score=102.75  Aligned_cols=37  Identities=22%  Similarity=0.384  Sum_probs=32.8

Q ss_pred             CcceEEEECCCchHHHHhhcccc-CCCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~~   39 (419)
                      .+||+||||||.+|+++|.+|++ .|++|+|||+.+..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            46999999999999999999997 67999999997543

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.80  E-value=1.6e-09  Score=100.27  Aligned_cols=42  Identities=26%  Similarity=0.269  Sum_probs=38.7

Q ss_pred             cceEEEECCCchHHHHhhccc--cCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLS--VDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La--~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ++||+|||||++||+||++|+  +.|++|+|+||++.+||.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            589999999999999999997  469999999999999998864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.78  E-value=2.5e-09  Score=98.35  Aligned_cols=43  Identities=26%  Similarity=0.481  Sum_probs=37.4

Q ss_pred             CCC-cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~-~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |++ +|||+|||||++|++||.+|++.|++|+|+||+ .+||.|.
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~   45 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMA   45 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeee
Confidence            654 699999999999999999999999999999985 6788764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.74  E-value=4e-09  Score=96.98  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=35.1

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |.+.|||+|||||++|++||.+|+++|++|+|+|++..
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            77789999999999999999999999999999999764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.74  E-value=3.7e-09  Score=96.89  Aligned_cols=41  Identities=20%  Similarity=0.145  Sum_probs=35.4

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      |++|||+|||||++||+||.+|+++|++|+|+|++. +||..
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~   44 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRV   44 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGG
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCee
Confidence            568999999999999999999999999999999975 55544

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.72  E-value=2.5e-08  Score=97.88  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .++|+||||+|.+|+++|.+|++.|++|+|+|+++..+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            46899999999999999999999999999999988655

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.72  E-value=1.9e-08  Score=97.50  Aligned_cols=56  Identities=7%  Similarity=0.114  Sum_probs=46.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++|+++++|++|.. +++++ .|.++++++.||.||.+++..|
T Consensus       189 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v~~~~g~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          189 KEMVAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-VLETSEQEISCDSGIFALNLHP  244 (452)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-EEEESSCEEEESEEEECSCCBC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-EEEECCCEEEeCEEEECcCCCC
Confidence            45788888999999999999999999997 46776 6777545899999998887655

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.71  E-value=1.7e-07  Score=91.22  Aligned_cols=57  Identities=19%  Similarity=0.141  Sum_probs=47.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|++++++++|++|.. +++++. |.+ +|+++.||.||.+++..|.
T Consensus       202 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~-v~~~~g~~i~aD~Vv~a~G~~p~  259 (472)
T 3iwa_A          202 KSLSQMLRHDLEKNDVVVHTGEKVVRLEG-ENGKVA-RVITDKRTLDADLVILAAGVSPN  259 (472)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEE-EEEESSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEc-cCCeEE-EEEeCCCEEEcCEEEECCCCCcC
Confidence            46788888999999999999999999997 477766 444 8889999999998877643

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.69  E-value=5e-08  Score=95.79  Aligned_cols=58  Identities=16%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             cCcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCC-cEEEEEe---CC-----eEEEcCEEEeCCCCC
Q 014768          231 LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEG-KVVGVTS---EG-----ETAKCKKVVCDPSYL  288 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~-~v~gV~~---~g-----~~i~ad~VV~~~~~~  288 (419)
                      -.....++.+.+++.| ++|++++.|++|+.++++ ++++|+.   +|     .+++|+.||++++.+
T Consensus       225 R~s~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~  292 (507)
T 1coy_A          225 KKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSV  292 (507)
T ss_dssp             BCCTTTTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHH
T ss_pred             CcChHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCcc
Confidence            4455667777676665 999999999999995325 7999986   45     368899999887643

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.64  E-value=1.4e-08  Score=95.35  Aligned_cols=41  Identities=24%  Similarity=0.260  Sum_probs=36.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      |++++||+|||||++|+++|+.|+++|++|+|+||+...+|
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            45679999999999999999999999999999999885554

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.64  E-value=7.3e-08  Score=95.55  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=32.4

Q ss_pred             CcceEEEECCCchHHHHhhccccC-CCeEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~   37 (419)
                      ++||+||||||.+|+++|.+|++. |.+|+|||+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999974 79999999987

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.63  E-value=7.9e-09  Score=100.56  Aligned_cols=45  Identities=29%  Similarity=0.324  Sum_probs=41.5

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      |++++||+|||||++|++||..|++.|++|+|+||++.+||.|..
T Consensus         1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            777899999999999999999999999999999999999998763

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.63  E-value=6.8e-08  Score=95.65  Aligned_cols=39  Identities=28%  Similarity=0.400  Sum_probs=35.2

Q ss_pred             CcceEEEECCCchHHHHhhccccC-CCeEEEeccCCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGG   41 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~GG   41 (419)
                      .++|+||||+|.+|+++|.+|+++ |.+|+|||+.+...+
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~   51 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRG   51 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCC
Confidence            469999999999999999999998 899999999876543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.60  E-value=1.3e-08  Score=95.45  Aligned_cols=44  Identities=11%  Similarity=0.212  Sum_probs=39.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |++.+||+|||||++|+++|..|+++|++|+|+|+++.+||.+.
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   54 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA   54 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence            45678999999999999999999999999999999999999875

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.59  E-value=1.2e-08  Score=99.96  Aligned_cols=44  Identities=27%  Similarity=0.444  Sum_probs=38.9

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ++++||+|||||++|++||..|++.|++|+|+||++.+||.|..
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~   66 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLN   66 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            34689999999999999999999999999999999999997653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.58  E-value=1.6e-08  Score=93.89  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |++++||+|||||++|+++|..|+++|++|+|+|+++.+||.+.
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   45 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLT   45 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            34569999999999999999999999999999999999999774

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.58  E-value=2.4e-08  Score=95.50  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=36.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCe-EEEeccCCCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGG   41 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~~GG   41 (419)
                      |++.+||+|||||++||++|..|+++|.+ |+|+||++.++.
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~   42 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   42 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccc
Confidence            77789999999999999999999999999 999999988754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.55  E-value=3e-08  Score=91.31  Aligned_cols=44  Identities=20%  Similarity=0.440  Sum_probs=38.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      |+.++||+|||||++|++||..|+++|++|+|+|+ ..+||.+..
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            55578999999999999999999999999999999 567887653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.54  E-value=2.9e-08  Score=92.67  Aligned_cols=43  Identities=26%  Similarity=0.364  Sum_probs=40.2

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      +++||+|||||++|+++|..|+++|++|+|+|+++.+||.+..
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~   44 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH   44 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC
Confidence            4689999999999999999999999999999999999998764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.54  E-value=4.1e-08  Score=88.92  Aligned_cols=42  Identities=24%  Similarity=0.299  Sum_probs=38.4

Q ss_pred             CcceEEEECCCchHHHHhhccccC-CCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||+|||||++||++|..|+++ |.+|+|+||++.+||.++
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~   80 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW   80 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCcee
Confidence            357999999999999999999997 999999999999987654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.54  E-value=2.4e-08  Score=97.05  Aligned_cols=56  Identities=14%  Similarity=0.093  Sum_probs=45.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE-e-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-S-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~-~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++|+++++|++|..+ +++...|+ + +|+ +.||.||.+++..|
T Consensus       211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          211 QDMRRGLHAAMEEKGIRILCEDIIQSVSAD-ADGRRVATTMKHGE-IVADQVMLALGRMP  268 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-TTSCEEEEESSSCE-EEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEc-CCCEEEEEEcCCCe-EEeCEEEEeeCccc
Confidence            457888889999999999999999999974 44445677 6 777 99999998876654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.53  E-value=2.5e-08  Score=97.54  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++++ .|++ +|+++.||.||.+++..|
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vi~A~G~~p  288 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQST-ENCY-NVVLTNGQTICADRVMLATGRVP  288 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEee-CCEE-EEEECCCcEEEcCEEEEeeCCCc
Confidence            357888888899999999999999999984 6665 5666 788999999998876543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.53  E-value=5.1e-08  Score=92.81  Aligned_cols=41  Identities=20%  Similarity=0.332  Sum_probs=37.2

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ++.+||+|||||++||++|..|+++|++|+|+||++.++.+
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            35689999999999999999999999999999999877654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.52  E-value=5.9e-08  Score=93.89  Aligned_cols=44  Identities=16%  Similarity=0.220  Sum_probs=40.5

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCC--eEEEeccCCCCCCcccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYYGGESSS   45 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~~~GG~~~t   45 (419)
                      +..+||+|||||++||++|..|++.|.  +|+|+|+++.+||.+..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            356899999999999999999999999  99999999999997754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.51  E-value=2.8e-07  Score=91.93  Aligned_cols=37  Identities=30%  Similarity=0.497  Sum_probs=34.1

Q ss_pred             CcceEEEECCCchHHHHhhcccc-CCCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~~   39 (419)
                      .++|+||||+|.+|+++|.+|++ .|.+|+|||+....
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            46999999999999999999999 89999999998654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.50  E-value=4.3e-08  Score=90.02  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             cceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++||++|+.|+++  |++|+|+|+++.+||.+.
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~  121 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW  121 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence            58999999999999999999997  999999999999988665

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.50  E-value=4.7e-08  Score=90.31  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=38.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ..+||+|||||++|+++|..|+++|++|+|+|++ .+||.+..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            4689999999999999999999999999999999 78887764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.50  E-value=5.1e-08  Score=89.71  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=37.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .+||+|||||++||+||..|+++|++|+|+|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            589999999999999999999999999999999  8888764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.49  E-value=4.4e-08  Score=90.83  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=39.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccC----CCCCCccccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN----DYYGGESSSL   46 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~----~~~GG~~~t~   46 (419)
                      +.+||+|||||++||++|..|+++|++|+|+|++    ..+||.+...
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~   68 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT   68 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccc
Confidence            4689999999999999999999999999999994    4889887643

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.49  E-value=5.4e-08  Score=95.49  Aligned_cols=57  Identities=14%  Similarity=0.103  Sum_probs=47.6

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCCCCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLP  289 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~~~~  289 (419)
                      ...++.+|.+.++++|++|+++++|++|..+ + ++++|++    +|+  +++||.||.+++.+.
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            3578999999999999999999999999984 5 5677776    465  799999999887764

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.49  E-value=2.5e-08  Score=97.37  Aligned_cols=44  Identities=16%  Similarity=0.329  Sum_probs=40.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |+.++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   45 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence            55679999999999999999999999999999999999999764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.48  E-value=3.3e-08  Score=96.59  Aligned_cols=44  Identities=36%  Similarity=0.471  Sum_probs=40.7

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |+.++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            55679999999999999999999999999999999999998764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.47  E-value=5.8e-08  Score=95.80  Aligned_cols=59  Identities=19%  Similarity=0.155  Sum_probs=46.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcE--EEEEe-CCe-EEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV--VGVTS-EGE-TAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v--~gV~~-~g~-~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|++|+++++|++|..++++++  ..|++ +|+ ++.||.||.+++..|.
T Consensus       255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~  317 (523)
T 1mo9_A          255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR  317 (523)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEEC
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccC
Confidence            35778888999999999999999999987424544  34566 676 8999999998877654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.47  E-value=3.8e-08  Score=95.42  Aligned_cols=55  Identities=24%  Similarity=0.152  Sum_probs=43.6

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~~~  288 (419)
                      .+.+.|.+.+++.|++++++++|++|..+ ++++++|++    +|+  +++||.||.+.+..
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~  161 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYS  161 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence            45566777777889999999999999984 788877665    565  79999999776543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.47  E-value=3.9e-08  Score=90.96  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=39.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+||+|||||++||+||..|+++|++|+|+|+++.+||.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            47999999999999999999999999999999999999874

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.47  E-value=4.7e-08  Score=94.94  Aligned_cols=43  Identities=21%  Similarity=0.385  Sum_probs=39.2

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |++++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus         1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (463)
T 2r9z_A            1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV   43 (463)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence            777899999999999999999999999999999998 6888764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.47  E-value=5.4e-08  Score=94.67  Aligned_cols=57  Identities=14%  Similarity=0.153  Sum_probs=46.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++ ...|.++++++.||.||.+++..|.
T Consensus       216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHM-DG-EFVLTTTHGELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEE-TT-EEEEEETTEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CC-EEEEEECCcEEEcCEEEECCCCCcC
Confidence            357888889999999999999999999863 44 4466777788999999988776543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.46  E-value=6.8e-08  Score=92.21  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      +++||+|||||++||++|+.|+++|++|+|+||.+.++
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~   59 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK   59 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999999999999999998764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.46  E-value=5.2e-08  Score=94.31  Aligned_cols=56  Identities=9%  Similarity=0.092  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+++.|++++++++|++|..+ ++....|++ +|+++.||.||.+++..|
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vv~a~G~~p  265 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKN-TDGSLTLELEDGRSETVDCLIWAIGREP  265 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEEC-TTSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCcEEEEEECCCcEEEcCEEEECCCCCc
Confidence            47788888889999999999999999873 433345666 788999999998876554

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.45  E-value=7.1e-08  Score=95.03  Aligned_cols=44  Identities=25%  Similarity=0.344  Sum_probs=39.3

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCC--------CCCCcccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS   45 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~--------~~GG~~~t   45 (419)
                      +.++||+|||||++|++||..|++.|++|+|+||++        .+||.|..
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   81 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVN   81 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCC
Confidence            346999999999999999999999999999999965        78997653

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.44  E-value=7.9e-08  Score=87.75  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=38.2

Q ss_pred             cceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++||+||+.|+++  |++|+|+|+++.+||.++
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            57999999999999999999998  999999999999998665

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.44  E-value=1e-07  Score=95.74  Aligned_cols=44  Identities=32%  Similarity=0.495  Sum_probs=38.7

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |+..+||||||||++|++||..|+++|++|+|+|+.+..||.+.
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~   86 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI   86 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSST
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCccc
Confidence            44579999999999999999999999999999999999998654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.42  E-value=1.2e-07  Score=89.65  Aligned_cols=39  Identities=15%  Similarity=0.099  Sum_probs=36.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+||+|||||++||++|..|+++|++|+|+||++.+++.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~   49 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAF   49 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCC
Confidence            589999999999999999999999999999999888653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.42  E-value=7e-08  Score=94.47  Aligned_cols=40  Identities=23%  Similarity=0.278  Sum_probs=37.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++|++||..|++.|++|+|+|+++ +||.|.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            4899999999999999999999999999999975 888764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.41  E-value=8.9e-08  Score=93.41  Aligned_cols=57  Identities=11%  Similarity=0.133  Sum_probs=43.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCC---eEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG---ETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g---~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++++.....++   +++.+|.||.+++..|
T Consensus       221 ~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          221 EQVAKEAQKILTKQGLKILLGARVTGTEVK-NKQVTVKFVDAEGEKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCEEEEEESSSEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEc-CCEEEEEEEeCCCcEEEECCEEEEeeCCcc
Confidence            457888888899999999999999999974 65554332343   6899999998876544

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.40  E-value=1e-07  Score=90.90  Aligned_cols=56  Identities=14%  Similarity=0.137  Sum_probs=42.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccc---------eEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPEC---------KVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~---------~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.++|.+.+++.|++++++++|+         +|..+ ++++ +|++++.+++||.||.+++.+.
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETRQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCcEEECCEEEECCCccH
Confidence            5689999999999999999999999         88873 6666 7777555899999998887653

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.40  E-value=1.5e-07  Score=92.25  Aligned_cols=41  Identities=29%  Similarity=0.453  Sum_probs=36.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      |++++||+|||||++||++|..|+++|.+|+|+||++.++.
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   48 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG   48 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            35679999999999999999999999999999999987753

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.40  E-value=9e-08  Score=88.09  Aligned_cols=56  Identities=16%  Similarity=0.035  Sum_probs=45.0

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C----C--eEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E----G--ETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~----g--~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+++.|++++++++|++|..+ ++++.+|++ +    |  +++.||.||.++++.|
T Consensus       185 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          185 ILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSCEEE
T ss_pred             HHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCCCceEEEEcCEEEEEeCCCC
Confidence            46667777888899999999999999974 667777776 3    4  5799999999887654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.40  E-value=8.2e-08  Score=93.70  Aligned_cols=57  Identities=9%  Similarity=-0.001  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC-eEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-ETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g-~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+++.|++++++++|++|..++++++..|++ +| +++.||.||.+++..|
T Consensus       227 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p  285 (479)
T 2hqm_A          227 CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKS  285 (479)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCC
Confidence            577788888899999999999999998732343456666 78 7899999998876654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.39  E-value=9.2e-08  Score=93.07  Aligned_cols=41  Identities=27%  Similarity=0.411  Sum_probs=39.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            58999999999999999999999999999999999999865

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.39  E-value=1.2e-07  Score=93.83  Aligned_cols=42  Identities=29%  Similarity=0.275  Sum_probs=39.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||+|||||++|+++|..|+++|++|+|+|+++.+||.+.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            458999999999999999999999999999999999999774

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.39  E-value=1.4e-07  Score=93.26  Aligned_cols=40  Identities=20%  Similarity=0.305  Sum_probs=34.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||||||||++||+||+.|++ |.+|+||||.+..||.+.
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s~   47 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTF   47 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC----
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCChh
Confidence            5899999999999999999999 999999999998876543

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.37  E-value=1.3e-07  Score=82.83  Aligned_cols=53  Identities=21%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          235 PQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       235 ~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.|.+.+++. |++++ +++|++|..+ ++++++|.+ +|++++||.||.+.+.+.
T Consensus        71 ~~~l~~~~~~~~gv~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           71 HARAKYLLEGLRPLHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             HHHHHHHHHTCTTEEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHHHHHHcCCCcEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            34455666666 88888 6799999984 788878887 777899999998877653

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.37  E-value=2.1e-07  Score=88.51  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=34.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ..+||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4589999999999999999999999999999998764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.37  E-value=1.2e-07  Score=86.99  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEE-eccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLH-MDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~v-lE~~~~~GG~~~t   45 (419)
                      +.+||+|||||++||+||..|+++|++|+| +|| +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            468999999999999999999999999999 999 778988753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.36  E-value=1.3e-07  Score=92.01  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=40.0

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +.++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   46 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence            3568999999999999999999999999999999999999875

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.36  E-value=8.8e-08  Score=93.48  Aligned_cols=41  Identities=20%  Similarity=0.299  Sum_probs=37.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~   59 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCV   59 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccc
Confidence            4689999999999999999999999999999986 7888764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.36  E-value=8.6e-08  Score=93.87  Aligned_cols=56  Identities=20%  Similarity=0.232  Sum_probs=45.6

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+++.|++|+++++|++|..+ +++...|++ +|+++.||.||.+++..|
T Consensus       236 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~G~~i~~D~vv~a~G~~p  292 (495)
T 2wpf_A          236 TIREEVTKQLTANGIEIMTNENPAKVSLN-TDGSKHVTFESGKTLDVDVVMMAIGRIP  292 (495)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEC-TTSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCceEEEEECCCcEEEcCEEEECCCCcc
Confidence            57788888999999999999999999874 443345666 788999999998887654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.36  E-value=1.2e-07  Score=95.52  Aligned_cols=55  Identities=16%  Similarity=0.117  Sum_probs=45.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~~  287 (419)
                      ..+..+|.+.+.+.|++|+++++|++|..+ ++++.||..    +|+  .+.||.||.+++-
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            468999999999999999999999999984 888888764    455  4899998876543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.35  E-value=1.7e-07  Score=91.71  Aligned_cols=42  Identities=24%  Similarity=0.258  Sum_probs=38.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEecc--------CCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR--------NDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~--------~~~~GG~~~   44 (419)
                      .+|||+|||||++|++||..|++.|++|+|+||        ...+||.|.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   54 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV   54 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeec
Confidence            469999999999999999999999999999998        567899764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.35  E-value=1.1e-07  Score=88.95  Aligned_cols=38  Identities=13%  Similarity=0.001  Sum_probs=34.3

Q ss_pred             ceEEEECCCchHHHHhhccccCC------CeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G------~~V~vlE~~~~~GG~   42 (419)
                      +||||||||++||++|+.|+++|      .+|+|||++...+|.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~a   44 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTT   44 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGSG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCCc
Confidence            38999999999999999999998      999999999865553

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.35  E-value=1.7e-07  Score=88.13  Aligned_cols=41  Identities=17%  Similarity=0.275  Sum_probs=37.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~   44 (419)
                      +++||+|||||++|+++|..|++.|+ +|+|+|+++ +||.+.
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~   44 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFK   44 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHH
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccc
Confidence            46899999999999999999999999 999999999 888654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.34  E-value=2.9e-07  Score=91.19  Aligned_cols=41  Identities=32%  Similarity=0.491  Sum_probs=36.9

Q ss_pred             CC-CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         1 m~-~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      |+ .++||+|||||++||++|+.|+++|.+|+|+||++.++.
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~   42 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSP   42 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCC
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            54 468999999999999999999999999999999987653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.34  E-value=1.7e-07  Score=86.99  Aligned_cols=43  Identities=23%  Similarity=0.302  Sum_probs=38.1

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      +..+||+|||||++|+++|..|+++|++|+|+|++ .+||.+..
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   54 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMT   54 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            45689999999999999999999999999999986 77887643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.34  E-value=1.7e-07  Score=92.68  Aligned_cols=43  Identities=26%  Similarity=0.352  Sum_probs=39.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .++||||||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~   62 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYW   62 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc
Confidence            3589999999999999999999999999999999999997753

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.34  E-value=1.5e-07  Score=91.31  Aligned_cols=56  Identities=20%  Similarity=0.107  Sum_probs=45.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++++ .+++ +|+++.+|.||.+++..|
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vv~A~G~~p  264 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKGA-RVELEGGEVLEADRVLVAVGRRP  264 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCEE-EEEECCCeEEEcCEEEECcCCCc
Confidence            457888888889999999999999999873 5543 4555 788999999998876654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.34  E-value=1.4e-07  Score=91.91  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=39.3

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL   46 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence            358999999999999999999999999999999999999764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.33  E-value=2.1e-07  Score=88.49  Aligned_cols=57  Identities=14%  Similarity=0.066  Sum_probs=45.2

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEE-EEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVV-GVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~-gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.|.+.+++. |++|+++++|++|+.+ +++++ .|++ +|++++||.||.+.+...
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~g~v~~~~g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRD-ERHAIDQVRLNDGRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEEC-TTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc-CCceEEEEEECCCCEEECCEEEECCCCCh
Confidence            35667777888887 9999999999999984 66664 5666 788999999998776653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.33  E-value=1.6e-07  Score=93.78  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC----------------CeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE----------------GETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~----------------g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+++.|++|+++++|++|..++++++++|++.                |.+++||.||.+.+..
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~  216 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCH  216 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTT
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCC
Confidence            35777788888888999999999999998544778888763                3689999999877665

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.33  E-value=2.3e-07  Score=88.43  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=33.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|||||++||++|..|+++|++|+||||.+.+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~   37 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAAS   37 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            489999999999999999999999999999987653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.32  E-value=1.8e-07  Score=92.30  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=39.3

Q ss_pred             cceEEEECCCchHHHHhhccc-cCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLS-VDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La-~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ++||+|||||++|+++|..|+ +.|++|+|+|+++.+||.+..
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~   50 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYW   50 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccc
Confidence            589999999999999999999 999999999999999997653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.32  E-value=2.1e-07  Score=89.87  Aligned_cols=41  Identities=29%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+||+|||||++||+||..|+++|++|+|+|+++.+||...
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            47999999999999999999999999999999999999754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.32  E-value=2.3e-07  Score=91.68  Aligned_cols=42  Identities=26%  Similarity=0.455  Sum_probs=39.3

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||||||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~   49 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY   49 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            358999999999999999999999999999999999999765

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.31  E-value=3.1e-07  Score=91.00  Aligned_cols=56  Identities=13%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+++.|++++.+ +|++|..++++.+++|++ +|+++.||.||.+.+..
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~  221 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMR  221 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCc
Confidence            568888889888899999999 899998754566777877 77789999999877654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.31  E-value=2e-07  Score=95.14  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=40.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ..+||+|||||++||+||..|+++|++|+|+|+++.+||.+..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            4579999999999999999999999999999999999998764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.31  E-value=1.5e-07  Score=87.04  Aligned_cols=43  Identities=16%  Similarity=0.209  Sum_probs=38.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEecc----CCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR----NDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~----~~~~GG~~~t   45 (419)
                      +.+||+|||||++|+++|..|+++|++|+|+|+    ...+||.+..
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            358999999999999999999999999999999    6778887653

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.31  E-value=3.3e-07  Score=89.65  Aligned_cols=40  Identities=15%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ..+||+|||||++||++|..|++.|++|+|+|+++.+|+.
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            3589999999999999999999999999999999988753

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.30  E-value=3.3e-07  Score=89.72  Aligned_cols=39  Identities=28%  Similarity=0.497  Sum_probs=35.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      +++||+|||||++||++|..|+++|.+|+|+||++.++.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   49 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTG   49 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            468999999999999999999999999999999887653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.30  E-value=2.6e-07  Score=83.93  Aligned_cols=60  Identities=13%  Similarity=0.044  Sum_probs=44.9

Q ss_pred             EEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          224 YIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       224 ~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ......+...+.+.+.+.+++.|++++. ++|++|..  ++   .|.+ +|+++.+|.||.++++.|
T Consensus       166 v~~v~~~~~~~~~~~~~~l~~~gv~i~~-~~v~~i~~--~~---~v~~~~g~~~~~D~vi~a~G~~p  226 (297)
T 3fbs_A          166 TTFFTNGIVEPDADQHALLAARGVRVET-TRIREIAG--HA---DVVLADGRSIALAGLFTQPKLRI  226 (297)
T ss_dssp             EEEECTTTCCCCHHHHHHHHHTTCEEEC-SCEEEEET--TE---EEEETTSCEEEESEEEECCEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHHCCcEEEc-ceeeeeec--CC---eEEeCCCCEEEEEEEEEccCccc
Confidence            3344444446677788888999999995 89999874  33   5666 888999999999887654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.30  E-value=1.9e-07  Score=90.80  Aligned_cols=41  Identities=29%  Similarity=0.482  Sum_probs=37.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +++||+|||||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~   42 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCL   42 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccc
Confidence            3689999999999999999999999999999998 7888764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.29  E-value=3.5e-07  Score=90.69  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=36.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ++||+|||||++||++|..|+++|.+|+|+||++.++..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~   64 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITH   64 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC
Confidence            589999999999999999999999999999999887643

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.28  E-value=3.7e-07  Score=90.76  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=33.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      ++||+|||||++||++|+.|+++|++|+||||.+.++
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            5799999999999999999999999999999998765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.28  E-value=2.1e-07  Score=90.43  Aligned_cols=40  Identities=35%  Similarity=0.469  Sum_probs=37.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++|++||..|++.|++|+|+|+++ +||.|.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~   45 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL   45 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence            6899999999999999999999999999999988 888763

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.27  E-value=3.4e-07  Score=89.45  Aligned_cols=57  Identities=16%  Similarity=0.109  Sum_probs=43.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe-----EEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~-----~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++|+++++|++|..++++++ .|++ +++     ++.+|.||.+.+..|
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECccccc
Confidence            35778888889999999999999999987424444 3544 432     799999998876654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.26  E-value=2.8e-07  Score=87.47  Aligned_cols=36  Identities=22%  Similarity=0.393  Sum_probs=33.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ++||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   37 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            579999999999999999999999999999998753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.26  E-value=4e-07  Score=88.33  Aligned_cols=41  Identities=15%  Similarity=0.329  Sum_probs=38.7

Q ss_pred             ceEEEECCCchHHHHhhcccc---CCCe---EEEeccCCCCCCcccc
Q 014768            5 YDVIVLGTGLKECILSGLLSV---DGLK---VLHMDRNDYYGGESSS   45 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~---~G~~---V~vlE~~~~~GG~~~t   45 (419)
                      +||+|||||++||+||..|++   .|++   |+|+|+++.+||.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            699999999999999999999   9999   9999999999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.26  E-value=4.4e-07  Score=83.10  Aligned_cols=40  Identities=15%  Similarity=0.301  Sum_probs=36.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCCCcccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSS   45 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~t   45 (419)
                      +||+|||||++|++||..|+++|+ +|+|+|++ .+||.+..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~   42 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG   42 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc
Confidence            799999999999999999999999 99999995 67887653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.26  E-value=5.8e-07  Score=90.78  Aligned_cols=38  Identities=16%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             CcceEEEECCCchHHHHhhcccc-CCCeEEEeccCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYYG   40 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~~G   40 (419)
                      .++||+|||||++||++|+.|++ .|.+|+||||++.++
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999999 999999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.26  E-value=2.9e-07  Score=90.01  Aligned_cols=56  Identities=18%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+++.|++|+++++|++|..+ +++...|++ +|+++.||.||.+++..|
T Consensus       232 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~G~~i~~D~vv~a~G~~p  288 (490)
T 1fec_A          232 ELRKQLTEQLRANGINVRTHENPAKVTKN-ADGTRHVVFESGAEADYDVVMLAIGRVP  288 (490)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEEC-TTSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEECCCcEEEcCEEEEccCCCc
Confidence            57888889999999999999999999874 433345666 788999999998876654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.22  E-value=2.7e-07  Score=90.54  Aligned_cols=55  Identities=18%  Similarity=0.141  Sum_probs=45.3

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+++.|++|+++++|++|..+ ++++ .|++ +|+++.||.||++++..|
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT-GAGV-LVTMTDGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEE-EEEECCCcEEEcCEEEECCCCCc
Confidence            57788888999999999999999999973 5555 4555 788999999998876654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.22  E-value=4.9e-07  Score=85.42  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=33.1

Q ss_pred             ceEEEECCCchHHHHhhccccC--CCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~   39 (419)
                      .||+|||||++||++|..|+++  |++|+|+||++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3899999999999999999999  9999999999876

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.21  E-value=5.4e-07  Score=89.43  Aligned_cols=54  Identities=15%  Similarity=0.159  Sum_probs=42.9

Q ss_pred             cHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .+.+.|.+.+++. |++++ +.+|+.|..+ ++++.+|.+ +|+++.||.||.+++.+
T Consensus       118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~  173 (641)
T 3cp8_A          118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTF  173 (641)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTC
T ss_pred             HHHHHHHHHHHhCCCCEEE-eeEEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCC
Confidence            4566677777774 89985 6699999984 888888888 78899999999877654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.20  E-value=3e-07  Score=89.16  Aligned_cols=41  Identities=12%  Similarity=0.220  Sum_probs=38.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||+|||||++|++||..|++.|++|+|+|+ +.+||.|.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            358999999999999999999999999999999 78999875

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.20  E-value=3.8e-07  Score=88.40  Aligned_cols=41  Identities=22%  Similarity=0.269  Sum_probs=37.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~   42 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence            3589999999999999999999999999999998 7888763

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.19  E-value=7.4e-07  Score=88.41  Aligned_cols=56  Identities=14%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             CcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+++. |++++++ +|++|..++++.+++|++ +|+++.||.||.+.+..
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~  251 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFR  251 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCc
Confidence            46888899999998 9999999 999998744567778887 78889999999877654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.19  E-value=4.7e-07  Score=88.76  Aligned_cols=58  Identities=7%  Similarity=0.023  Sum_probs=45.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeE-EEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~-i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ +++...|++ +|++ +.||.||.+++..|.
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~  276 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKV-SDKNLSIHLSDGRIYEHFDHVIYCVGRSPD  276 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-STTCEEEEETTSCEEEEESEEEECCCBCCT
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEc-CCceEEEEECCCcEEEECCEEEECCCCCcC
Confidence            357788888999999999999999999873 433235555 7877 999999998876653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.19  E-value=7.1e-07  Score=91.45  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=39.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .+||+|||||++||+||..|+++|++|+|+|+++.+||.+..
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            479999999999999999999999999999999999998764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.19  E-value=5.2e-07  Score=86.71  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=32.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3699999999999999999999999999999986

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.17  E-value=6.8e-07  Score=88.26  Aligned_cols=56  Identities=7%  Similarity=0.080  Sum_probs=44.8

Q ss_pred             CcHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+++ .|++++.+ +|++|..++++.+++|++ +|++++||.||.+.+..
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~  232 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAK  232 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGG
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcc
Confidence            4577888888888 89999999 599998743566667777 77789999999876554

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.17  E-value=6.7e-07  Score=88.48  Aligned_cols=54  Identities=17%  Similarity=0.164  Sum_probs=44.5

Q ss_pred             cHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .+.+.|.+.+++ .|++| ++++|++|.. +++++++|.+ +|.++.||.||.+++..
T Consensus       124 ~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          124 RYREYMKKVCENQENLYI-KQEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             HHHHHHHHHHHhCCCCEE-EEeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence            467777777877 49998 5889999998 4888999988 88899999999877654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.16  E-value=8.6e-07  Score=86.13  Aligned_cols=55  Identities=18%  Similarity=0.262  Sum_probs=44.5

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.++|.+.+++.|++++++++| +|..+ ++++.+|..  ++.++.||.||.+++-.
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~~g~~~a~~VVlAtGg~  175 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTEKRGLVEDVDKLVLATGGY  175 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEETTTEEECCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEEeCCCeEEeeeEEECCCCC
Confidence            467888888888889999999999 99984 888888865  34568899998776544

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.16  E-value=9e-07  Score=87.89  Aligned_cols=54  Identities=19%  Similarity=0.113  Sum_probs=44.3

Q ss_pred             cHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .+.+.|.+.+++ .|++| ++++|++|.. +++++++|.+ +|.++.||.||.+++.+
T Consensus       125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~  180 (651)
T 3ces_A          125 LYRQAVRTALENQPNLMI-FQQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTF  180 (651)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTT
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCC
Confidence            466777777777 59998 6789999998 4888989988 78899999999877654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.16  E-value=9.8e-07  Score=80.71  Aligned_cols=39  Identities=23%  Similarity=0.448  Sum_probs=35.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++|+++|..|+++|++|+|+|+  .+||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            47999999999999999999999999999986  4788765

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.15  E-value=1.1e-06  Score=81.17  Aligned_cols=40  Identities=20%  Similarity=0.073  Sum_probs=36.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +||+|||||++|+.||..|+++|++|+|+|+++..+...+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h   41 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAH   41 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccc
Confidence            5899999999999999999999999999999986665544

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.14  E-value=5.3e-07  Score=88.20  Aligned_cols=41  Identities=22%  Similarity=0.241  Sum_probs=38.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ++||+|||||++|++||..|+++ ++|+|+|+++.+||.+..
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            47999999999999999999999 999999999999998764

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.14  E-value=7e-07  Score=88.15  Aligned_cols=38  Identities=32%  Similarity=0.538  Sum_probs=34.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+||+||||||.+|+++|.+|++ |.+|+|||+.+..++
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~   62 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTA   62 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCC
Confidence            45999999999999999999999 999999999876543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.14  E-value=1.2e-06  Score=86.83  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~   38 (419)
                      ++||+||||||.+|+++|.+|++.| .+|+||||.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4699999999999999999999998 79999999765

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.14  E-value=6.9e-07  Score=94.24  Aligned_cols=41  Identities=27%  Similarity=0.347  Sum_probs=39.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            58999999999999999999999999999999999999887

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.13  E-value=8.1e-07  Score=87.40  Aligned_cols=56  Identities=9%  Similarity=-0.034  Sum_probs=45.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+++.+.+.+++.|+++++++.|.++... ++++. |.+ +++++.+|.|+++.+-.|
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~-~~~~~-v~~~~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKM-DDKIL-VEFSDKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEE-TTEEE-EEETTSCEEEESEEEECSCEEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEec-CCeEE-EEEcCCCeEEEEEEEEcccccC
Confidence            458888999999999999999999999973 66554 444 888899999998776544

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.13  E-value=6.8e-07  Score=89.39  Aligned_cols=56  Identities=16%  Similarity=0.158  Sum_probs=46.0

Q ss_pred             CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~~~  288 (419)
                      ..+.++|.+.+++.| ++|+++++|++|..+ ++++.+|..    +|+  ++.|+.||.+++-+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            468889999998889 999999999999984 888888753    566  79999988766543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.11  E-value=1.3e-06  Score=73.17  Aligned_cols=33  Identities=39%  Similarity=0.539  Sum_probs=32.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +||+|||||++|+.+|..|++.|.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999999999999987

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.11  E-value=1e-06  Score=88.81  Aligned_cols=54  Identities=13%  Similarity=0.094  Sum_probs=44.1

Q ss_pred             CcHHHHHHHHHHHc--CcEEEcCCccceEEEcCCC---cEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVY--GGTYMLNKPECKVEFDEEG---KVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~--G~~i~~~~~V~~I~~~~~~---~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..+..+|.+.+++.  |++|+.++.|++|..+ ++   ++.||..    +|+  .+.|+.||.+++
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~-~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATG  230 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLD-KNTPNRIAGAVGFNLRANEVHIFKANAMVVACG  230 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEEC-SSSTTBEEEEEEEESSSSCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEe-CCccceEEEEEEEEcCCCcEEEEEeCEEEECCC
Confidence            57888999988888  9999999999999985 55   9999864    343  589999887653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.10  E-value=1.5e-06  Score=88.31  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=38.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+||+|||||++|++||..|+++|++|+|+|+++.+||.+.
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            57999999999999999999999999999999999999864

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.08  E-value=1.7e-06  Score=87.28  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=43.4

Q ss_pred             CcHHHHHHHHHHHc-Cc-EEEcCCccceEEEcCCC---cEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVY-GG-TYMLNKPECKVEFDEEG---KVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~-G~-~i~~~~~V~~I~~~~~~---~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..+...|.+.+++. |+ +|+++++|++|..+ ++   +++||..    +|+  .+.|+.||.+++
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~-~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtG  215 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKD-NNDPNAVAGAVGFSVREPKFYVFKAKAVILATG  215 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC-TTCTTBEEEEEEEESSSSCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc-CCccceeEEEEEEEecCCcEEEEEcCEEEECCC
Confidence            45778888888887 99 99999999999984 66   8988763    454  689999887554

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.08  E-value=1e-06  Score=85.61  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=36.9

Q ss_pred             cceEEEECCCchHHHHhhccccCC-----CeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG-----LKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G-----~~V~vlE~~~~~GG~~   43 (419)
                      .+||||||||++||++|..|++.|     .+|+|||+++.+|...
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~   74 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG   74 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC
Confidence            579999999999999999999999     9999999999988443

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.06  E-value=1.2e-06  Score=84.72  Aligned_cols=42  Identities=14%  Similarity=0.139  Sum_probs=38.7

Q ss_pred             CcceEEEECCCchHHHHhhcccc-C------CCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSV-D------GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~-~------G~~V~vlE~~~~~GG~~~   44 (419)
                      +.+||+|||||++|+.||..|++ .      |++|+|+|+++.+||.++
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            46899999999999999999999 7      999999999999998764

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.05  E-value=2.4e-06  Score=82.04  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=47.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEE--cCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEF--DEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~--~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..  + ++++.+|.+ +|+++.||.||.+++..|
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~v~~~~G~~i~~D~Vv~a~G~~p  250 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTD-QQKVTAVLCEDGTRLPADLVIAGIGLIP  250 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTT-TCCEEEEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccC-CCcEEEEEeCCCCEEEcCEEEECCCCCc
Confidence            35777888888999999999999999986  3 577778887 888999999998887654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.03  E-value=1.3e-06  Score=86.01  Aligned_cols=56  Identities=16%  Similarity=0.181  Sum_probs=46.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+++.|++++.+ +|++|..++++.+++|++ +|++++||.||.+.+..
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  229 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFR  229 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcc
Confidence            467888888888899999999 999999744566778887 77789999999877654

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.03  E-value=2.3e-06  Score=84.89  Aligned_cols=37  Identities=35%  Similarity=0.477  Sum_probs=34.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+||+||||||.+|+++|.+|+++|++|+|||+++..
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4699999999999999999999999999999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.00  E-value=2.6e-06  Score=80.55  Aligned_cols=57  Identities=16%  Similarity=0.150  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++. ..|++ +|+++.||.||.+++..|.
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKA-GEG-LEAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEec-CCE-EEEEECCCCEEECCEEEECcCCCcC
Confidence            357788888999999999999999999873 554 35565 8889999999998876553

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.00  E-value=2.4e-06  Score=82.62  Aligned_cols=54  Identities=19%  Similarity=0.161  Sum_probs=43.6

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+++. +++++++.|.+|..  ++++..+..+++++.||.||.+++..|
T Consensus       191 ~~~~~l~~~l~~~-v~i~~~~~v~~i~~--~~~v~~v~~~g~~i~~D~Vv~a~G~~p  244 (449)
T 3kd9_A          191 EVTDILEEKLKKH-VNLRLQEITMKIEG--EERVEKVVTDAGEYKAELVILATGIKP  244 (449)
T ss_dssp             HHHHHHHHHHTTT-SEEEESCCEEEEEC--SSSCCEEEETTEEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHhC-cEEEeCCeEEEEec--cCcEEEEEeCCCEEECCEEEEeeCCcc
Confidence            4677778888888 99999999999985  335556666889999999998887654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.00  E-value=2.7e-06  Score=83.70  Aligned_cols=40  Identities=23%  Similarity=0.476  Sum_probs=36.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ..+||+|||||++|++||..|+++|++|+|+|+  .+||.+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            468999999999999999999999999999997  5788775

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.99  E-value=2.7e-06  Score=90.38  Aligned_cols=41  Identities=22%  Similarity=0.440  Sum_probs=38.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~   44 (419)
                      .+||+|||||++||+||..|+++|+ +|+|+|+++.+||.+.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~  228 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST  228 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc
Confidence            4799999999999999999999999 7999999999999753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.99  E-value=2.3e-06  Score=85.83  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=31.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..+||+|||||++|++||..|++.|++|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            4689999999999999999999999999999983

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.97  E-value=2.9e-06  Score=85.93  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=33.8

Q ss_pred             cceEEEECCCchHHHHhhcccc-----CCCeEEEeccCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSV-----DGLKVLHMDRNDYY   39 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~-----~G~~V~vlE~~~~~   39 (419)
                      ++||+|||||++||++|..|++     .|.+|+|+||.+.+
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            5899999999999999999999     99999999998764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.92  E-value=3.3e-06  Score=81.70  Aligned_cols=42  Identities=14%  Similarity=0.035  Sum_probs=38.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~   44 (419)
                      ..+||+|||||++|+.+|..|++.|  ++|+|+|+++.+||.++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            3579999999999999999999998  99999999999998754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.91  E-value=4.8e-06  Score=81.41  Aligned_cols=55  Identities=18%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.++++|++++++++|++|..+ ++++ .|++ +|+++.||.||.+++..|
T Consensus       227 ~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~p  282 (493)
T 1m6i_A          227 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEP  282 (493)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCc
Confidence            47778888889999999999999999863 5554 5666 888999999998887654

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.88  E-value=5.3e-06  Score=82.02  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             cceEEEECCCchHHHHhhcccc-CCCeEEEeccCCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYYG   40 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~~G   40 (419)
                      +||+||||||.+|+++|.+|++ .|.+|+|||+.+..+
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~   39 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDE   39 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCT
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCccc
Confidence            5899999999999999999998 799999999987764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.88  E-value=5.5e-06  Score=79.70  Aligned_cols=39  Identities=26%  Similarity=0.401  Sum_probs=35.8

Q ss_pred             CCCcceEEEECCCchHHHHhhcccc---CCCeEEEeccCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDYY   39 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~---~G~~V~vlE~~~~~   39 (419)
                      |....||||||||++|++||..|++   .|++|+|+|+++..
T Consensus         1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            6666799999999999999999999   89999999999865

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.87  E-value=5.5e-06  Score=82.92  Aligned_cols=54  Identities=9%  Similarity=0.001  Sum_probs=43.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++   +|.+ +|+++.||.||++++..|
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~D~Vi~a~G~~p  282 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN-GA---VVRLKSGSVIQTDMLILAIGVQP  282 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GT---EEEETTSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC-CC---EEEECCCCEEEcCEEEEccCCCC
Confidence            457888888999999999999999999752 34   3555 888999999998887654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.85  E-value=6e-06  Score=79.82  Aligned_cols=57  Identities=16%  Similarity=0.207  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|.. +++++..|.++|+++.||.||.+++..|
T Consensus       191 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~~v~~~g~~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          191 KEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDEIITKTLDGKEIKSDIAILCIGFRP  247 (452)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTEEEEEETTSCEEEESEEEECCCEEE
T ss_pred             hhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCeEEEEEeCCCEEECCEEEECcCCCC
Confidence            45778888899999999999999999987 3677777777888999999998887654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.83  E-value=8.8e-06  Score=77.59  Aligned_cols=57  Identities=14%  Similarity=0.086  Sum_probs=47.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+.+++.|++++++++|++|..  ++++.+|++ +|+++.||.||++++..|.
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPA  242 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEECCCCEEEcCEEEEeeCCeec
Confidence            35677788888899999999999999985  346667877 8999999999998876643

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.81  E-value=7.6e-06  Score=77.95  Aligned_cols=51  Identities=22%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+++.|++++++++|++|. + +    .|++ +|+++.||.||.+++..|
T Consensus       188 ~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~----~v~~~~g~~i~~D~vi~a~G~~p  239 (408)
T 2gqw_A          188 TLADFVARYHAAQGVDLRFERSVTGSV-D-G----VVLLDDGTRIAADMVVVGIGVLA  239 (408)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEE-T-T----EEEETTSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C----EEEECCCCEEEcCEEEECcCCCc
Confidence            467788888899999999999999997 4 3    4555 888999999999887654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.79  E-value=5.1e-06  Score=79.18  Aligned_cols=52  Identities=15%  Similarity=0.137  Sum_probs=42.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..  ++    |.+ +|+++.||.||.+++..|
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~~----v~~~~g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--HE----IVDEKGNTIPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS--SE----EEETTSCEEECSEEEEECCEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC--Ce----EEECCCCEEeeeEEEECCCCCc
Confidence            35788888899999999999999999863  22    455 889999999998776654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.78  E-value=7.9e-06  Score=79.81  Aligned_cols=56  Identities=16%  Similarity=0.194  Sum_probs=46.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..  ++++..|.++|+++.||.||.+++..|
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~v~~v~~~g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG--NGKVEKIITDKNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC--SSSCCEEEESSCEEECSEEEECCCEEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc--CCcEEEEEECCcEEECCEEEECCCCCc
Confidence            35777888888999999999999999984  455656667888999999998887654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.78  E-value=8.8e-06  Score=78.52  Aligned_cols=56  Identities=16%  Similarity=0.139  Sum_probs=45.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..  ++++..|.++++++.||.||.+++..|
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~v~~v~~~~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKVVTDKNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC--SSBCCEEEESSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEc--cCcEEEEEECCCEEECCEEEECcCCCC
Confidence            35778888888999999999999999985  355556667788999999998876554

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.77  E-value=1.4e-05  Score=75.02  Aligned_cols=51  Identities=25%  Similarity=0.369  Sum_probs=40.3

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      .+.+.+.+.+++.|++++++++|++|..  +    +|++ +|+ +.+|.||.+++..|.
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~----~v~~~~g~-i~~D~vi~a~G~~p~  235 (367)
T 1xhc_A          184 ELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTNSGF-IEGKVKICAIGIVPN  235 (367)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEETTEE-EECSCEEEECCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEe--e----EEEECCCE-EEcCEEEECcCCCcC
Confidence            5677788888999999999999999862  2    3555 666 999999987766543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.74  E-value=1.1e-05  Score=78.48  Aligned_cols=56  Identities=14%  Similarity=0.115  Sum_probs=46.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..  ++++..+.++++++.||.||.+++..|
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~v~~v~~~~~~i~~D~vi~a~G~~p  282 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKG--NERVEAVETDKGTYKADLVLVSVGVKP  282 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE--SSBEEEEEETTEEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEc--CCcEEEEEECCCEEEcCEEEECcCCCc
Confidence            35778888889999999999999999986  356767777778999999998876654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.65  E-value=1.8e-05  Score=78.86  Aligned_cols=58  Identities=16%  Similarity=0.138  Sum_probs=45.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEc------------------CCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFD------------------EEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~------------------~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+                  +++++..+..+|+++.||.||.+++..|
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  267 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRP  267 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCcc
Confidence            357777888889999999999999999862                  1455544334888999999998887654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.65  E-value=2.8e-05  Score=73.33  Aligned_cols=39  Identities=10%  Similarity=0.133  Sum_probs=35.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      ++.+|+|||||++|++||..|++.|.+|+|+|+++.++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            357899999999999999999888999999999998874

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.55  E-value=4.3e-05  Score=74.68  Aligned_cols=56  Identities=16%  Similarity=0.089  Sum_probs=42.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC----eEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG----ETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g----~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|+++++|++|++|+  +++....+.. +|    +++.||.||.+++..|
T Consensus       272 ~~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~  332 (502)
T 4g6h_A          272 KKLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKHEDGKITEETIPYGTLIWATGNKA  332 (502)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEECTTSCEEEEEEECSEEEECCCEEC
T ss_pred             HHHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEecCcccceeeeccCEEEEccCCcC
Confidence            4577888888999999999999999985  2443334443 54    4699999998886544

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.48  E-value=4e-05  Score=73.44  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=39.3

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C--CeEEEcCEEEeCCCCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E--GETAKCKKVVCDPSYL  288 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~--g~~i~ad~VV~~~~~~  288 (419)
                      .....+.+.+.++++|+++++|+.|++|+   .++++ +.. +  ++++.||.||.+++..
T Consensus       199 ~~~~~~~l~~~l~~~GV~~~~~~~v~~v~---~~~~~-~~~~~g~~~~i~~d~vi~~~G~~  255 (430)
T 3hyw_A          199 IGASKRLVEDLFAERNIDWIANVAVKAIE---PDKVI-YEDLNGNTHEVPAKFTMFMPSFQ  255 (430)
T ss_dssp             STTHHHHHHHHHHHTTCEEECSCEEEEEC---SSEEE-EECTTSCEEEEECSEEEEECEEE
T ss_pred             hHHHHHHHHHHHHhCCeEEEeCceEEEEe---CCceE-EEeeCCCceEeecceEEEeccCC
Confidence            45666777788899999999999999885   33332 332 3  4689999998776543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.47  E-value=4.3e-05  Score=73.37  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=41.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++++|+++.-   +   .|.+ +|+++.+|.||.+.+..|
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~---~---~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAING---N---EITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEET---T---EEEETTSCEEECSEEEECCCEEE
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEecC---C---eeeecCCeEEeeeeEEEEeceec
Confidence            45778888899999999999999998753   2   2445 899999999998776544

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.41  E-value=5e-05  Score=72.07  Aligned_cols=38  Identities=18%  Similarity=0.311  Sum_probs=32.7

Q ss_pred             ceEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~   42 (419)
                      .+|||||||.+|++||.+|++.|  .+|+|+|+++....+
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~   42 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC   42 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc
Confidence            47999999999999999998876  599999999875443

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.99  E-value=8.3e-05  Score=72.70  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=28.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCC--------------eEEEeccCCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL--------------KVLHMDRNDYYG   40 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~--------------~V~vlE~~~~~G   40 (419)
                      -+||||||+|++||++|+.|.++|.              .++.+|+.+..+
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~   89 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA   89 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC
Confidence            3899999999999999999987543              556666665443

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.35  E-value=0.0023  Score=61.40  Aligned_cols=39  Identities=26%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ..+++|||+|..|+.+|..|++.|.+|+++|+.+.+..+
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc
Confidence            468999999999999999999999999999999887653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.30  E-value=0.0019  Score=60.78  Aligned_cols=38  Identities=13%  Similarity=0.034  Sum_probs=35.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+..+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            47999999999999999999999999999999988665

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.27  E-value=0.0028  Score=57.52  Aligned_cols=36  Identities=22%  Similarity=0.164  Sum_probs=33.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR  181 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            479999999999999999999999999999988764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.27  E-value=0.0027  Score=56.89  Aligned_cols=38  Identities=29%  Similarity=0.301  Sum_probs=34.4

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |++..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            1 MTGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            66556899999999999999999999999999998763

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.24  E-value=0.0026  Score=49.97  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|+|||+|..|...|..|++.|++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3589999999999999999999999999999854

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.19  E-value=0.0031  Score=50.86  Aligned_cols=34  Identities=26%  Similarity=0.559  Sum_probs=31.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|+|||+|..|...|..|.+.|++|+++++++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5799999999999999999999999999999753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.13  E-value=0.0024  Score=50.49  Aligned_cols=33  Identities=33%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+++|+|+|-.|...|..|+++|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999964

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.07  E-value=0.0039  Score=50.09  Aligned_cols=34  Identities=18%  Similarity=0.079  Sum_probs=31.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +.+++|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4589999999999999999999999999999963

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.06  E-value=0.0033  Score=49.68  Aligned_cols=34  Identities=12%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      -+|+|||.|-.|...|..|.+.|++|+++|+++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4799999999999999999999999999999753

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.99  E-value=0.0033  Score=60.55  Aligned_cols=37  Identities=16%  Similarity=0.101  Sum_probs=34.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||||..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999988764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.98  E-value=0.0039  Score=60.14  Aligned_cols=37  Identities=16%  Similarity=0.088  Sum_probs=34.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+|+|+.+.+..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999987654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=95.94  E-value=0.0047  Score=57.95  Aligned_cols=40  Identities=23%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      ..+++|||+|..|+.+|..|++.|.+|+++|+.+.+..+.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~  184 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL  184 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Confidence            3579999999999999999999999999999998876543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.93  E-value=0.0032  Score=57.09  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      -+|.|||||..|...|..++.+|++|+++|.++.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.92  E-value=0.0043  Score=57.85  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=34.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            4799999999999999999999999999999988755

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.91  E-value=0.0044  Score=59.61  Aligned_cols=37  Identities=22%  Similarity=0.181  Sum_probs=33.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+.+|..|++.|.+|+++|+.+.+..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~  204 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999887643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.85  E-value=0.0048  Score=59.38  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=34.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5799999999999999999999999999999987654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=95.82  E-value=0.0054  Score=59.41  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=35.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999987663

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.82  E-value=0.0059  Score=55.27  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            57999999999999999999999999999987654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.80  E-value=0.005  Score=57.14  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ||+..+|.|||+|..|...|..|+++|++|+++++++
T Consensus         1 mm~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            1 MIESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            6666799999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.71  E-value=0.0065  Score=46.01  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=30.6

Q ss_pred             ceEEEECCCchHHHHhhccccCC-CeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~   37 (419)
                      .+|+|+|+|..|...+..|.+.| ++|+++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            57999999999999999999999 9999999863

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.66  E-value=0.0064  Score=58.38  Aligned_cols=37  Identities=24%  Similarity=0.181  Sum_probs=34.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  204 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP  204 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh
Confidence            4799999999999999999999999999999987653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.59  E-value=0.0078  Score=54.23  Aligned_cols=35  Identities=11%  Similarity=-0.069  Sum_probs=32.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|.|||.|..|...|..|+++|++|+++++++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999999875

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.59  E-value=0.0078  Score=56.98  Aligned_cols=39  Identities=13%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+..+
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            357999999999999999999999999999999887654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.52  E-value=0.018  Score=55.26  Aligned_cols=37  Identities=22%  Similarity=0.139  Sum_probs=34.2

Q ss_pred             ceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG   41 (419)
                      +||+|||||++|++||..|++.  |.+|+|+|+++.+|.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   39 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence            4899999999999999999998  999999999987654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.42  E-value=0.0088  Score=57.66  Aligned_cols=36  Identities=28%  Similarity=0.293  Sum_probs=33.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l  202 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL  202 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc
Confidence            479999999999999999999999999999988765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.39  E-value=0.0094  Score=53.88  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|+++|++|+++|+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999874

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.38  E-value=0.0085  Score=54.58  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      |.+..+|.|||+|..|...|..|+++|+ +|+++|.++
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            6666799999999999999999999998 999999975

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.29  E-value=0.03  Score=53.31  Aligned_cols=40  Identities=20%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCC--eEEEeccCCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYYG   40 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~~~G   40 (419)
                      |++.+||+|||||++|++||..|++.|+  +|+|+|+++..+
T Consensus         1 M~~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~   42 (431)
T 1q1r_A            1 MNANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP   42 (431)
T ss_dssp             -CCSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             CCCCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC
Confidence            6667899999999999999999999998  899999988754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.27  E-value=0.0097  Score=57.14  Aligned_cols=36  Identities=28%  Similarity=0.249  Sum_probs=33.3

Q ss_pred             CcceEEEECCCchHHHHhhccccC-CC-eEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVD-GL-KVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~-~V~vlE~~~~   38 (419)
                      +..+|.|||+|..|+..|..|+++ |+ +|+++|+++.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            346899999999999999999999 99 9999999876

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=95.23  E-value=0.038  Score=47.67  Aligned_cols=36  Identities=19%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +++||+|||||++|+.+|..|++.|.+|+|+|++..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~   37 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD   37 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            468999999999999999999999999999999843

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=95.22  E-value=0.011  Score=57.47  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=34.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-.
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  231 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA  231 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh
Confidence            5799999999999999999999999999999987654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.18  E-value=0.011  Score=57.03  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            4799999999999999999999999999999988755

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.14  E-value=0.014  Score=56.81  Aligned_cols=38  Identities=26%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            47999999999999999999999999999999987643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=95.14  E-value=0.0096  Score=57.72  Aligned_cols=37  Identities=14%  Similarity=0.151  Sum_probs=34.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  222 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ  222 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            4799999999999999999999999999999987654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.14  E-value=0.012  Score=56.68  Aligned_cols=37  Identities=16%  Similarity=0.083  Sum_probs=34.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999987654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.10  E-value=0.012  Score=54.41  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |++..+|.|||.|..|...|..|+++|++|+++++++
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            5556789999999999999999999999999999875

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.10  E-value=0.013  Score=53.49  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=31.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|+++|++|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            479999999999999999999999999999975

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.06  E-value=0.014  Score=56.01  Aligned_cols=34  Identities=26%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||.|.+|+++|..|+++|++|++.|+++.
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            5799999999999999999999999999999763

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.05  E-value=0.022  Score=53.87  Aligned_cols=38  Identities=13%  Similarity=0.262  Sum_probs=34.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCe--EEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLK--VLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~--V~vlE~~~~~GG~   42 (419)
                      .||+|||||++|++||..|+++|++  |+|+|+++.++..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~   42 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD   42 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC
Confidence            3899999999999999999999987  9999999987654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.03  E-value=0.013  Score=56.63  Aligned_cols=34  Identities=18%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .++|.|||+|..|+..|..|+++|++|+++++++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3689999999999999999999999999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.00  E-value=0.008  Score=51.44  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=30.6

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|+|||+|-.|...|..|.++|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            699999999999999999999999999998643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.99  E-value=0.0098  Score=49.29  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.8

Q ss_pred             ceEEEECCCchHHHHhhccccC-CCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVD-GLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~   37 (419)
                      .+|+|||+|..|...|..|.+. |++|+++|+++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            4799999999999999999999 99999999965

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.99  E-value=0.016  Score=52.80  Aligned_cols=37  Identities=19%  Similarity=0.420  Sum_probs=32.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      |....+|.|||+|-.|...|..|+..|+ +|.++|.+.
T Consensus         1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            6556789999999999999999999998 999999874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=94.97  E-value=0.04  Score=53.92  Aligned_cols=44  Identities=32%  Similarity=0.443  Sum_probs=40.4

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |+.++||+|||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            34568999999999999999999999999999999998999865

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.97  E-value=0.014  Score=53.09  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|-.|.+.|..|+++|++|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999999999999999975

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=94.95  E-value=0.013  Score=55.36  Aligned_cols=40  Identities=20%  Similarity=0.319  Sum_probs=36.0

Q ss_pred             cceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~   43 (419)
                      ++||+|||||++|+++|+.|+++  |++|+|||+++..+|..
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s   77 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEG   77 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcch
Confidence            48999999999999999999999  99999999987665543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.95  E-value=0.014  Score=55.81  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|+..|..|+++|++|+++++++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            489999999999999999999999999999875

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.93  E-value=0.017  Score=52.14  Aligned_cols=35  Identities=29%  Similarity=0.224  Sum_probs=33.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF  178 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence            57999999999999999999999999999998876

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.92  E-value=0.013  Score=52.48  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +.+|.|||+|..|...|..|+ +|++|+++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            367999999999999999999 999999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.91  E-value=0.012  Score=46.37  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|+|+|+|-.|...|..|.+.|++|+++++++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999863

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=94.87  E-value=0.018  Score=55.26  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            48999999999999999999999999999999877654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=94.86  E-value=0.033  Score=54.15  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=35.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      +++||+|||||++|+++|+.|+++|++|+|+||++..+|.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~gt   41 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACAT   41 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCCc
Confidence            4689999999999999999999999999999998765543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=94.79  E-value=0.019  Score=56.40  Aligned_cols=34  Identities=21%  Similarity=0.090  Sum_probs=32.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            5799999999999999999999999999999876

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.78  E-value=0.018  Score=51.89  Aligned_cols=35  Identities=17%  Similarity=-0.049  Sum_probs=33.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            47999999999999999999999999999999877

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=94.77  E-value=0.057  Score=53.16  Aligned_cols=36  Identities=11%  Similarity=0.238  Sum_probs=33.5

Q ss_pred             CcceEEEECCCchHHHHhhcccc---CCCeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~---~G~~V~vlE~~~~   38 (419)
                      +.+||||||||++|+++|+.|++   .|.+|+|+|+.+.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            46899999999999999999999   9999999999764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.77  E-value=0.015  Score=53.85  Aligned_cols=35  Identities=11%  Similarity=0.040  Sum_probs=29.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            47999999999999999999999999999997654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.75  E-value=0.027  Score=44.56  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|+|||+|..|...|..|++.|.+|++++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            479999999999999999999999999999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=94.75  E-value=0.064  Score=52.26  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             cceEEEECCCchHHHHhhcccc---CCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~---~G~~V~vlE~~~~   38 (419)
                      .+||||||||++|+++|+.|++   +|.+|+|+|+.+.
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            3699999999999999999999   9999999999864

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.74  E-value=0.011  Score=57.07  Aligned_cols=37  Identities=14%  Similarity=0.131  Sum_probs=34.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            4799999999999999999999999999999987754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.73  E-value=0.014  Score=55.69  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=34.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~  185 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL  185 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc
Confidence            47999999999999999999999999999999887543

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=94.73  E-value=0.083  Score=52.41  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             cceEEEECCCchHHHHhhccccC------CCeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~------G~~V~vlE~~~~~GG~~   43 (419)
                      ++||||||||++||++|..|+++      |.+|+||||++.+|+..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~   80 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT   80 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcc
Confidence            48999999999999999999998      99999999999988753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.72  E-value=0.017  Score=53.09  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=30.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..+|.|||+|-.|...|..|+++|++|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            458999999999999999999999999999984

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.72  E-value=0.021  Score=48.52  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||+|..|.+.|..|+++|++|+++++++.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5799999999999999999999999999999765

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.69  E-value=0.019  Score=51.33  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=30.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||+|..|...|..|+++|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999998764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=94.68  E-value=0.022  Score=51.91  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            47999999999999999999999999999998876

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.65  E-value=0.015  Score=55.54  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=33.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+|.|||.|.+|+++|..|+++|++|++.|.+...-|
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~   42 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG   42 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch
Confidence            4799999999999999999999999999999876543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=94.64  E-value=0.024  Score=51.59  Aligned_cols=36  Identities=22%  Similarity=0.178  Sum_probs=33.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC
Confidence            479999999999999999999999999999988763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.63  E-value=0.019  Score=55.14  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=32.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .++|||+|+|-.|...|..|++.|++|+|+|+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            46899999999999999999999999999999753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.63  E-value=0.047  Score=52.91  Aligned_cols=42  Identities=21%  Similarity=0.294  Sum_probs=38.1

Q ss_pred             CcceEEEECCCchHHHHhhcccc-CCCeEEEec--------cCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMD--------RNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE--------~~~~~GG~~~   44 (419)
                      .++||+|||||++|++||..|++ .|++|+|+|        +.+.+||.|.
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~   52 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCV   52 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCcccc
Confidence            46899999999999999999999 999999999        4678899764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.60  E-value=0.021  Score=56.21  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=32.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+++.+..
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            47999999999999999999999999999998763

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=94.60  E-value=0.049  Score=52.86  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=39.8

Q ss_pred             CCCcceEEEECCCchHHHHhhcccc-CCCeEEEec--------cCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMD--------RNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE--------~~~~~GG~~~   44 (419)
                      |.+++||+|||||++|++||..|++ .|++|+|+|        +.+.+||.|.
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~   56 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCV   56 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHH
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeee
Confidence            6667999999999999999999999 999999999        4678899765

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=94.60  E-value=0.054  Score=52.63  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             cceEEEECCCchHHHHhhccccC---CCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD---GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~---G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||||||||++|++||..|++.   |++|+|+|+++ +||.|.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~   44 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAV   44 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence            48999999999999999999999   99999999999 999764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=94.58  E-value=0.062  Score=50.39  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=34.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ++||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            589999999999999999999999999999998765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.57  E-value=0.021  Score=55.08  Aligned_cols=37  Identities=16%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP  211 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999987654

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.55  E-value=0.022  Score=51.24  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |++..+|.|||+|..|...|..|++.|++|+++++++
T Consensus         1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             ---CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            6666789999999999999999999999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.54  E-value=0.025  Score=51.69  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=32.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            57999999999999999999999999999998876

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=94.52  E-value=0.026  Score=51.45  Aligned_cols=35  Identities=14%  Similarity=0.160  Sum_probs=32.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF  187 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence            47999999999999999999999999999998765

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.52  E-value=0.018  Score=53.50  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|..|...|..|+++|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.51  E-value=0.022  Score=54.23  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...+.|||.|.-|+..|..|+++|++|+++++++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36799999999999999999999999999999875

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.50  E-value=0.025  Score=53.31  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=35.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc
Confidence            479999999999999999999999999999998876543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.48  E-value=0.021  Score=51.68  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|+++|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.47  E-value=0.02  Score=55.17  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             CCCcceEEEECCCchHHHHhhccccC--CCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~   37 (419)
                      |++..+|.|||+|..|+..|..|+++  |++|+++++++
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            55456899999999999999999999  89999999864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.46  E-value=0.024  Score=51.33  Aligned_cols=34  Identities=29%  Similarity=0.273  Sum_probs=31.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||.|..|...|..|+++|++|+++++++.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999999764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=94.46  E-value=0.054  Score=52.04  Aligned_cols=43  Identities=30%  Similarity=0.434  Sum_probs=38.0

Q ss_pred             CCC-cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~-~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |++ ++||+|||||++|++||..|+++|++|+|+|| +.+||.|.
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            543 69999999999999999999999999999999 78998764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=94.43  E-value=0.026  Score=53.38  Aligned_cols=40  Identities=15%  Similarity=0.162  Sum_probs=35.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+.+.+-.+.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~  191 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV  191 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh
Confidence            3579999999999999999999999999999998875543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.40  E-value=0.021  Score=55.02  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            45799999999999999999999999999998753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.38  E-value=0.022  Score=54.22  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4799999999999999999999999999999876

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.38  E-value=0.06  Score=51.98  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=37.9

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +.++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence            34699999999999999999999999999999998 6888765

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.34  E-value=0.025  Score=54.51  Aligned_cols=36  Identities=14%  Similarity=-0.021  Sum_probs=33.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+-
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~  233 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM  233 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC
Confidence            479999999999999999999999999999987653

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=94.32  E-value=0.079  Score=50.70  Aligned_cols=38  Identities=32%  Similarity=0.553  Sum_probs=35.1

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      +.++||+|||||++|+++|..|+++|++|+|+||++.+
T Consensus         4 ~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            34689999999999999999999999999999998864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.30  E-value=0.03  Score=53.78  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|+++|++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.29  E-value=0.026  Score=52.17  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|.|||+|.-|.+.|..|+++|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999864

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.27  E-value=0.12  Score=42.20  Aligned_cols=54  Identities=20%  Similarity=0.178  Sum_probs=43.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.+.+.+++.|++++++ +|++|..+ ++. ..|++ +| ++.||.||.+.+..|
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~-~~~-~~v~~~~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDM-GGV-FEVETEEG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEEC-SSS-EEEECSSC-EEEEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEc-CCE-EEEEECCC-EEEECEEEECCCCCC
Confidence            457788888889999999999 99999974 554 35666 56 899999999887766

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.24  E-value=0.089  Score=47.49  Aligned_cols=43  Identities=14%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |++.+||+|||||++|+++|..|+++|++|+|+|+. .+||.+.
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            2 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            456789999999999999999999999999999975 7888764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=94.22  E-value=0.069  Score=51.63  Aligned_cols=41  Identities=22%  Similarity=0.349  Sum_probs=37.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ++||+|||||++||+||..|+++|++|+|+|| +.+||.|..
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            68999999999999999999999999999999 788887653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=94.21  E-value=0.031  Score=50.64  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=32.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~  190 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY  190 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCcc
Confidence            47999999999999999999999999999998766

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=94.21  E-value=0.063  Score=52.05  Aligned_cols=40  Identities=13%  Similarity=0.218  Sum_probs=35.8

Q ss_pred             CCCcceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYG   40 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~G   40 (419)
                      |+.++||||||||++|++||..|+++  |.+|+|+|+++.++
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            45679999999999999999988876  89999999998765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.17  E-value=0.031  Score=47.69  Aligned_cols=33  Identities=15%  Similarity=0.127  Sum_probs=30.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ...|+|||||-.|...|..|.++|.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            467999999999999999999999999999875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.17  E-value=0.031  Score=50.60  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      +..+|.|||+|..|.+.|..|++.|+ +|+++|.++
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            34689999999999999999999999 999999973

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.16  E-value=0.029  Score=52.37  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=32.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|+|||+|..|+.+|..|...|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35899999999999999999999999999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.12  E-value=0.022  Score=56.15  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=32.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+++.+..
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            47999999999999999999999999999998763

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.12  E-value=0.029  Score=53.56  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=30.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|..|+..|..|+++|++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.12  E-value=0.019  Score=50.62  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=32.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...|+|||+|-.|+..|..|.+.|.+|+|++.+..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            46799999999999999999999999999998653

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.11  E-value=0.028  Score=51.39  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .+|+|||||-.|.+.|..|++.|+ +|+++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999999998 999999975

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=94.09  E-value=0.03  Score=54.07  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=33.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  223 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL  223 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc
Confidence            479999999999999999999999999999988765

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.08  E-value=0.024  Score=54.99  Aligned_cols=37  Identities=27%  Similarity=0.254  Sum_probs=34.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  235 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG  235 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc
Confidence            4799999999999999999999999999999988754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.06  E-value=0.031  Score=53.49  Aligned_cols=35  Identities=14%  Similarity=-0.017  Sum_probs=32.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCe-EEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~~   39 (419)
                      .+|+|||+|.+|+-.|..|++.|.+ |+++++.+.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4799999999999999999999999 9999998765

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=94.01  E-value=0.037  Score=53.25  Aligned_cols=38  Identities=13%  Similarity=0.230  Sum_probs=34.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  210 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT  210 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC
Confidence            47999999999999999999999999999999877544

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=93.99  E-value=0.036  Score=53.14  Aligned_cols=38  Identities=16%  Similarity=0.033  Sum_probs=34.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  185 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK  185 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc
Confidence            47999999999999999999999999999999876543

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.89  E-value=0.02  Score=51.47  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|--|.+.|..|+++|++|++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999974

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.87  E-value=0.036  Score=52.39  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||+|..|+..|..|++ |++|+++|+++.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            589999999999999999998 999999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=93.85  E-value=0.095  Score=50.36  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=40.1

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |+.++||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            777899999999999999999999999999999998 7888765

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.85  E-value=0.017  Score=49.53  Aligned_cols=35  Identities=11%  Similarity=0.163  Sum_probs=31.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEE-eccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLH-MDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~v-lE~~~~   38 (419)
                      ..+|.|||+|..|...|..|+++|++|++ +++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            35899999999999999999999999999 888643

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.75  E-value=0.038  Score=50.25  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=30.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      .+|+|||+|-.|...|..|+++|+  +|++++++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999999998  999999964

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.73  E-value=0.037  Score=49.51  Aligned_cols=34  Identities=18%  Similarity=0.182  Sum_probs=31.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||+|..|...|..|+++|++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3799999999999999999999999999999764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=93.73  E-value=0.11  Score=52.28  Aligned_cols=42  Identities=19%  Similarity=0.196  Sum_probs=37.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .++||||||||++||+||+.|+++|.+|+||||.+..+|.+.
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s~   45 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSA   45 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGGG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCccc
Confidence            358999999999999999999999999999999987766543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.72  E-value=0.038  Score=50.15  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=31.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|.|||+|..|...|..|++.|++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            36799999999999999999999999999998754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.71  E-value=0.032  Score=50.85  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=31.5

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCC----CeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G----~~V~vlE~~~   37 (419)
                      |++..+|.|||+|..|...|..|+++|    ++|+++++++
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            344568999999999999999999999    8999999876

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.69  E-value=0.039  Score=50.57  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=31.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|.|||+|-.|...|..|+++|++|+++++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3689999999999999999999999999999863

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=93.69  E-value=0.12  Score=50.77  Aligned_cols=40  Identities=8%  Similarity=0.150  Sum_probs=35.1

Q ss_pred             CCCcceEEEECCCchHHHHhhcccc---CCCeEEEeccCCCCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDYYG   40 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~---~G~~V~vlE~~~~~G   40 (419)
                      |++.+||||||||++|+++|+.|++   +|.+|+|||+.+.+.
T Consensus         2 ~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~   44 (538)
T 2aqj_A            2 NKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR   44 (538)
T ss_dssp             CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC
Confidence            1456899999999999999999999   999999999976543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.66  E-value=0.049  Score=49.72  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             ceEEEECCCchHHH-HhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~-aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||.|-+|++ +|..|.++|++|++.|+++.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            47999999999997 77889999999999999765

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=93.66  E-value=0.04  Score=49.69  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=31.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|.|||.|..|...|..|+++|++|+++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.64  E-value=0.042  Score=47.89  Aligned_cols=35  Identities=29%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|.|||+|..|...|..|+++|++|+++++++.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            35799999999999999999999999999998653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.59  E-value=0.16  Score=49.26  Aligned_cols=40  Identities=25%  Similarity=0.376  Sum_probs=37.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||||.+|++||..|++.|++|+|+|++ .+||.|.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~   41 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   41 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccc
Confidence            489999999999999999999999999999998 4788764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=93.57  E-value=0.13  Score=45.83  Aligned_cols=56  Identities=11%  Similarity=-0.010  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe----------CC-----eEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS----------EG-----ETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV~~----------~g-----~~i~ad~VV~~~~~~  288 (419)
                      ..+...|.+.+.+ .|++++++++|++|..+ ++++.+|.+          +|     .+++||.||.+.+..
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~  190 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHD  190 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCc
Confidence            4577778777765 69999999999999984 788877765          22     679999999877643

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.56  E-value=0.036  Score=52.47  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .++.|||.|..||..|..||++|++|+.+|-++
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            579999999999999999999999999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=93.56  E-value=0.14  Score=49.49  Aligned_cols=38  Identities=8%  Similarity=0.238  Sum_probs=34.6

Q ss_pred             ceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~   42 (419)
                      +||+|||||++|++||..|++.  |.+|+|+|+++..|+.
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~   76 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYA   76 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCC
Confidence            5999999999999999999986  8999999999887643

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.56  E-value=0.044  Score=49.51  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=30.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|-.|...|..|+ +|++|+++.+++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            48999999999999999999 999999999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.52  E-value=0.042  Score=49.96  Aligned_cols=32  Identities=25%  Similarity=0.563  Sum_probs=29.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|--|...|..|+++|++|+++ +++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            57999999999999999999999999999 654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.52  E-value=0.046  Score=49.39  Aligned_cols=35  Identities=31%  Similarity=0.461  Sum_probs=32.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|.|||.|..|...|..|+++|++|+++++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.51  E-value=0.048  Score=49.75  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .+|.|||||..|...|..|+++|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            589999999999999999999998 999999975

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.49  E-value=0.035  Score=51.36  Aligned_cols=34  Identities=21%  Similarity=0.152  Sum_probs=31.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|+|||+|..|+.+|..|...|.+|+++|+++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999999975

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=93.46  E-value=0.032  Score=53.63  Aligned_cols=36  Identities=11%  Similarity=0.059  Sum_probs=32.5

Q ss_pred             cceEEEECCCchHHHHhhccccC--CCeEEEeccCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYY   39 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~   39 (419)
                      ..+|+|||+|.+|+-+|..|++.  |.+|+++++.+.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45899999999999999999998  8999999997653

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=93.45  E-value=0.17  Score=50.24  Aligned_cols=39  Identities=26%  Similarity=0.278  Sum_probs=34.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC-CCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGG   41 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~-~~GG   41 (419)
                      .++||||||||++|+.||..|++.|.+|+|+|++. .+|+
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~   65 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ   65 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC
Confidence            35899999999999999999999999999999984 4553

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.44  E-value=0.053  Score=49.30  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||.|..|...|..|+++|++|+++++++
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            479999999999999999999999999999875

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.40  E-value=0.037  Score=55.14  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      -+|+|||||..|+-+|..|++.|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            36999999999999999999999999999997

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.38  E-value=0.048  Score=51.35  Aligned_cols=31  Identities=29%  Similarity=0.263  Sum_probs=29.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|..|+..|..|++ |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            69999999999999999999 99999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=93.36  E-value=0.053  Score=53.88  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=34.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            47999999999999999999999999999998876544

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.26  E-value=0.05  Score=49.05  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=30.2

Q ss_pred             eEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +|+|||+|..|.+.|..|+.+|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999998  999999974

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.20  E-value=0.038  Score=47.71  Aligned_cols=34  Identities=9%  Similarity=0.019  Sum_probs=30.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+++|+|+|-.|...|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3579999999999999999999999 999998753

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=93.20  E-value=0.18  Score=50.20  Aligned_cols=38  Identities=24%  Similarity=0.334  Sum_probs=34.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC-CCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYG   40 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~-~~G   40 (419)
                      .++||||||||++|++||+.|++.|.+|+|+|++. .+|
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG   65 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG   65 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc
Confidence            46999999999999999999999999999999984 444

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=93.14  E-value=0.041  Score=53.83  Aligned_cols=36  Identities=17%  Similarity=-0.057  Sum_probs=33.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC
Confidence            479999999999999999999999999999988764

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=93.13  E-value=0.2  Score=48.96  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=33.9

Q ss_pred             CcceEEEECCCchHHHHhhcccc------------CCCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSV------------DGLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~------------~G~~V~vlE~~~~~   39 (419)
                      ..+||||||||++|+++|..|++            +|.+|+|+|+.+.+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~   54 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA   54 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCC
Confidence            46899999999999999999999            99999999997653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.05  E-value=0.04  Score=51.97  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=32.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +.+|||||.|-.|...|..|.+.|++|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.05  E-value=0.047  Score=49.61  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=31.3

Q ss_pred             ceEEEECCCchHHHHhhccccCC-CeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~   37 (419)
                      .+|.|||.|..|...|..|+++| ++|+++++++
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            47999999999999999999999 9999999985

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=93.04  E-value=0.036  Score=50.26  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             ceEEEECCCchHHHHhhccccC-----C-CeEEEecc
Q 014768            5 YDVIVLGTGLKECILSGLLSVD-----G-LKVLHMDR   35 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~-----G-~~V~vlE~   35 (419)
                      .+|.|||+|..|...|..|+++     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5899999999999999999999     9 99999987

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.00  E-value=0.037  Score=47.51  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=31.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|.|||+|..|.+.|..|+++|++|+++++..
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~   39 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE   39 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH
Confidence            3589999999999999999999999999998853

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.99  E-value=0.043  Score=50.15  Aligned_cols=30  Identities=30%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEecc
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~   35 (419)
                      +|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.98  E-value=0.065  Score=45.32  Aligned_cols=32  Identities=28%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             eEEEEC-CCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.||| +|..|...|..|+++|++|+++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999 99999999999999999999999863

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.98  E-value=0.041  Score=49.15  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||.|..|...|..|+++|++|+++++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.98  E-value=0.056  Score=46.03  Aligned_cols=33  Identities=33%  Similarity=0.290  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .++.|||+|..|...|..|+++|++|++++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.91  E-value=0.061  Score=50.86  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+.-|||.|.-|+..|..|+++|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4688999999999999999999999999999753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.88  E-value=0.062  Score=52.02  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      -+++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            369999999999999999999999999999864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=92.88  E-value=0.062  Score=52.49  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=30.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      -+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            36999999999999999999999999999985

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.83  E-value=0.065  Score=48.48  Aligned_cols=32  Identities=16%  Similarity=0.217  Sum_probs=29.6

Q ss_pred             eEEEECCCchHHHHhhccccC--CCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~   37 (419)
                      +|.|||+|..|.+.|..|+++  |++|+++|+++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            699999999999999999985  79999999975

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=92.82  E-value=0.071  Score=48.40  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      ..+|.|||+|-.|.+.|..|+..|+ +|+++|.++
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            4689999999999999999999998 999999976

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.80  E-value=0.053  Score=50.09  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      +.+|||+|||.+|+.+|..|...|. +|+++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999998 999999985

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=92.77  E-value=0.086  Score=46.86  Aligned_cols=33  Identities=9%  Similarity=-0.063  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|+|||+|..|+-+|..|++.| +|+++++.+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            47999999999999999999999 9999998765

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=92.74  E-value=0.051  Score=49.21  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=31.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            579999999999999999999999 999999963

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.70  E-value=0.074  Score=47.78  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=32.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            47999999999999999999999999999998876

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=92.67  E-value=0.068  Score=47.99  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=27.5

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.+||-|..|...|..|.++|++|+++++++.
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            699999999999999999999999999998764

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.65  E-value=0.067  Score=51.54  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=31.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+.+|.|||+|..|...|..|+++|++|+++++++
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            34689999999999999999999999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=92.64  E-value=0.066  Score=48.30  Aligned_cols=37  Identities=27%  Similarity=0.256  Sum_probs=34.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc
Confidence            5799999999999999999999999999999987654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.63  E-value=0.076  Score=47.97  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .+|.|||+|-.|...|..|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            479999999999999999999996 999999874

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.59  E-value=0.072  Score=47.87  Aligned_cols=33  Identities=21%  Similarity=0.525  Sum_probs=30.8

Q ss_pred             eEEEEC-CCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.||| +|..|.+.|..|+++|++|+++++++.
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            699999 999999999999999999999998754

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.58  E-value=0.071  Score=48.40  Aligned_cols=34  Identities=12%  Similarity=0.213  Sum_probs=30.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      ..+|+|||+|-.|.+.|..|+..|.  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4789999999999999999999997  999999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=92.57  E-value=0.091  Score=47.60  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=33.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~  190 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR  190 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC
Confidence            479999999999999999999999999999988764

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.57  E-value=0.056  Score=50.95  Aligned_cols=30  Identities=37%  Similarity=0.464  Sum_probs=28.1

Q ss_pred             ceEEEECCCchHHHHhhcccc-CCCeEEEec
Q 014768            5 YDVIVLGTGLKECILSGLLSV-DGLKVLHMD   34 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE   34 (419)
                      .+|.|||+|..|.+.|..|++ +|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            479999999999999999998 599999999

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=92.57  E-value=0.062  Score=51.87  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccC--CCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|+..|..|+++  |++|+++++++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999998  79999999864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=92.55  E-value=0.064  Score=45.76  Aligned_cols=38  Identities=18%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             CCCcceEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |.+...|+|+|| |..|...+..|.++|++|+++.+++.
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            555568999996 99999999999999999999999743

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.53  E-value=0.061  Score=51.83  Aligned_cols=37  Identities=14%  Similarity=0.155  Sum_probs=33.9

Q ss_pred             ceEEEECCCchHHHHhhccccC-CCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~GG   41 (419)
                      .+++|||+|..|+-+|..|++. |.+|+++|+.+.+..
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~  197 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP  197 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc
Confidence            5799999999999999999999 999999999887644

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.49  E-value=0.074  Score=50.99  Aligned_cols=35  Identities=26%  Similarity=0.174  Sum_probs=31.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|.+.|. +|+++++++..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            479999999999999999999997 69999998765

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=92.46  E-value=0.16  Score=46.05  Aligned_cols=54  Identities=4%  Similarity=-0.043  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-C-----CeEEEcCEEEeCCCCCC
Q 014768          235 PQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-E-----GETAKCKKVVCDPSYLP  289 (419)
Q Consensus       235 ~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~-~-----g~~i~ad~VV~~~~~~~  289 (419)
                      .+.+.+.+.+. |++++++++|++|.. +++++.+|++ +     ++++.||.||.++++.|
T Consensus       211 ~~~~~~~l~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  271 (338)
T 3itj_A          211 STIMQKRAEKNEKIEILYNTVALEAKG-DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTP  271 (338)
T ss_dssp             CHHHHHHHHHCTTEEEECSEEEEEEEE-SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEE
T ss_pred             CHHHHHHHHhcCCeEEeecceeEEEEc-ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCC
Confidence            45555666565 999999999999998 4777777776 4     46899999999887654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.40  E-value=0.069  Score=54.27  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=31.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|+++|++|+++|+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999875

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.40  E-value=0.064  Score=49.46  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~   36 (419)
                      +.+|+|+|||-+|..+|..|...|. +|+++|++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4689999999999999999999997 89999997

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=92.38  E-value=0.21  Score=45.61  Aligned_cols=55  Identities=13%  Similarity=0.096  Sum_probs=43.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~  287 (419)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++++.+|+++++++.+|.||.+.+.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~~d~vV~AtG~  130 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGRQWLARAVISATGT  130 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCCEEEeCEEEECCCC
Confidence            456677778888899999999999999984 6655447774448999999987764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.34  E-value=0.072  Score=50.06  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|+|||+|..|+.+|..|...|.+|+++|+++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5799999999999999999999999999998753

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=92.32  E-value=0.095  Score=47.54  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      ..+|.|||+|..|.+.|..|+..|. +|.++|.++
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            4689999999999999999999988 999999976

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=92.30  E-value=0.22  Score=49.48  Aligned_cols=40  Identities=10%  Similarity=0.067  Sum_probs=36.5

Q ss_pred             cceEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~   43 (419)
                      ++||||||||++||+||..|+++|  .+|+||||.+..+|.+
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s   46 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChH
Confidence            589999999999999999999999  9999999998776643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=92.25  E-value=0.22  Score=45.81  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CC--eEEEcCEEEeCCCCCCc
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EG--ETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g--~~i~ad~VV~~~~~~~~  290 (419)
                      ..+.+.+.+..++.|++++++++|++|..+ ++++.+|++   +|  +++.+|.||.++++.|.
T Consensus       202 ~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~  264 (360)
T 3ab1_A          202 GKTAHEVERARANGTIDVYLETEVASIEES-NGVLTRVHLRSSDGSKWTVEADRLLILIGFKSN  264 (360)
T ss_dssp             SHHHHSSHHHHHHTSEEEESSEEEEEEEEE-TTEEEEEEEEETTCCEEEEECSEEEECCCBCCS
T ss_pred             HHHHHHHHHHhhcCceEEEcCcCHHHhccC-CCceEEEEEEecCCCeEEEeCCEEEECCCCCCC
Confidence            356777778888889999999999999974 777766665   66  68999999998877654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.25  E-value=0.087  Score=47.25  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|++.|++|+++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.23  E-value=0.083  Score=50.75  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...+|.|||.|..|...|..|+++|++|+++++++
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34689999999999999999999999999999986

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.19  E-value=0.048  Score=50.32  Aligned_cols=35  Identities=11%  Similarity=0.141  Sum_probs=32.2

Q ss_pred             cceEEEECCCchHHHHhhccccCC-------CeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G-------~~V~vlE~~~~   38 (419)
                      ..+|.|||+|..|.+.|..|+++|       ++|+++++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            358999999999999999999999       99999999876

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=92.10  E-value=0.11  Score=46.72  Aligned_cols=32  Identities=31%  Similarity=0.404  Sum_probs=28.8

Q ss_pred             ceEEEECCC-chHHHHhhccccCCCeEEEeccC
Q 014768            5 YDVIVLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         5 ~dvvIIGaG-i~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      .+|+|||+| +.|..+|..|...|.+|+|++++
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            579999999 67999999999999999998664

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=92.07  E-value=0.1  Score=46.54  Aligned_cols=33  Identities=12%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             ceEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+ |..|...|..|+++|++|+++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            37999999 9999999999999999999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=92.00  E-value=0.23  Score=48.89  Aligned_cols=37  Identities=8%  Similarity=0.149  Sum_probs=34.2

Q ss_pred             ceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG   41 (419)
                      .||+|||||++||+||..|++.  |++|+|+|+++.+|.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~   40 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSF   40 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccc
Confidence            3899999999999999999988  799999999998863

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=91.99  E-value=0.094  Score=46.94  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=30.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|..|...|..|+++|++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            68999999999999999999999999999875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=91.98  E-value=0.093  Score=46.60  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...|+|.|+|..|...+..|.++|++|+++.++..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            35799999999999999999999999999998754

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.96  E-value=0.1  Score=46.11  Aligned_cols=33  Identities=15%  Similarity=0.049  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..++|+|+|-.|..+|..|++.|.+|+|+.++.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            479999999999999999999999999998863

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.90  E-value=0.091  Score=47.75  Aligned_cols=36  Identities=22%  Similarity=0.376  Sum_probs=31.2

Q ss_pred             CCC-cceEEEECCCchHHHHhhccccCCC--eEEEeccC
Q 014768            1 MDE-EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (419)
Q Consensus         1 m~~-~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~   36 (419)
                      |++ ..+|.|||+|..|.+.|..|+..|.  +|+++|.+
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            543 4689999999999999999999997  99999985

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.90  E-value=0.096  Score=48.95  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=31.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|+|||+|..|+.+|..|...|.+|+++|+++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5799999999999999999999999999998753

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.89  E-value=0.097  Score=46.41  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=30.0

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|..|.+.|..|++.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999999999999999999999864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=91.87  E-value=0.073  Score=46.70  Aligned_cols=35  Identities=9%  Similarity=0.072  Sum_probs=31.9

Q ss_pred             cceEEEECCCchHHHHhhccccCC----CeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G----~~V~vlE~~~~   38 (419)
                      ..+|.|||+|..|...|..|+++|    ++|+++++++.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            458999999999999999999999    79999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.81  E-value=0.11  Score=46.92  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=31.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      .+|.|||+|..|.+.|..|+++|+  +|+++++++
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            579999999999999999999999  999999976

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=91.73  E-value=0.098  Score=50.61  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=31.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|.|||.|..|...|..|+++|++|+++++++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=91.73  E-value=0.31  Score=47.68  Aligned_cols=57  Identities=9%  Similarity=0.018  Sum_probs=44.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCC----cEEEEEeCC---eEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG----KVVGVTSEG---ETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~----~v~gV~~~g---~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.|.+.+++.|++|+++++|++|+.+ ++    .++....++   .+++||.||.+.+...
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQH-DDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE-CGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            467888889999999999999999999985 54    444333354   7899999998776653

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=91.69  E-value=0.083  Score=48.00  Aligned_cols=32  Identities=16%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             eEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +|.|||+|-.|.+.|..|+++|+  +|+++|+++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            69999999999999999999999  999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=91.64  E-value=0.087  Score=53.43  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=31.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||||..|...|..++.+|++|+++|.++.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            4799999999999999999999999999998754

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.63  E-value=0.11  Score=50.13  Aligned_cols=34  Identities=18%  Similarity=0.152  Sum_probs=31.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|.|||+|..|...|..|+++|++|+++++++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999999864

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=91.63  E-value=0.087  Score=46.24  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCC-CeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~   37 (419)
                      +|.|||+|..|...|..|+++| ++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            6999999999999999999999 9999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=91.58  E-value=0.1  Score=48.23  Aligned_cols=33  Identities=24%  Similarity=0.221  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..|+|+|+|-.|+.++..|...|.+|+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.55  E-value=0.089  Score=45.88  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            579999999999999999999996 899999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=91.54  E-value=0.12  Score=49.54  Aligned_cols=46  Identities=17%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             cCcEEEcCCccceEEEcCCC-cEEEEEe----------------CC--eEEEcCEEEeCCCCCCc
Q 014768          245 YGGTYMLNKPECKVEFDEEG-KVVGVTS----------------EG--ETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       245 ~G~~i~~~~~V~~I~~~~~~-~v~gV~~----------------~g--~~i~ad~VV~~~~~~~~  290 (419)
                      .|+++++++.+.+|.-++++ ++.+|++                +|  +++.||.||.+.++.|.
T Consensus       270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~  334 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSR  334 (460)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECC
T ss_pred             ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCC
Confidence            68999999999999863225 6666653                23  57999999999987664

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=91.53  E-value=0.13  Score=42.96  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=31.8

Q ss_pred             CCCcceEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |.. ..|+|+|| |..|...+..|.++|++|+++.+++
T Consensus         1 M~~-~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            1 MAV-KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CCC-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCC-CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            543 57999998 9999999999999999999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.51  E-value=0.12  Score=45.89  Aligned_cols=33  Identities=24%  Similarity=0.451  Sum_probs=30.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|+|+|||..|...+..|.++|++|+++.+++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            479999999999999999999999999998864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=91.45  E-value=0.11  Score=53.03  Aligned_cols=36  Identities=19%  Similarity=0.176  Sum_probs=32.8

Q ss_pred             ceEEEEC--CCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLG--TGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIG--aGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+|+|||  +|..|+-+|..|++.|.+|+++++.+ +..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~  566 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LAN  566 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccc
Confidence            4799999  99999999999999999999999988 543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=91.44  E-value=0.1  Score=47.35  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=30.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +..+|+|||+|-.|.+.|..|+..|.  +|.++|.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            45699999999999999999998884  899999863

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=91.41  E-value=0.12  Score=45.98  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCC---eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL---KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~---~V~vlE~~~   37 (419)
                      ..+|.|||+|..|.+.|..|+++|+   +|+++++++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            4689999999999999999999999   999999976

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=91.38  E-value=0.35  Score=46.46  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=36.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      ++|||+|||||++|++||..|++.|++|+|+||++.+||..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            57999999999999999999999999999999998555443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.36  E-value=0.11  Score=47.59  Aligned_cols=33  Identities=27%  Similarity=0.269  Sum_probs=31.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||.|..|.+.|..|.++|++|+++++++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999876

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=91.35  E-value=0.13  Score=45.19  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=30.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..++|||+|-+|.++|..|++.|.+|+|+.|+..
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999988743

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=91.28  E-value=0.18  Score=49.38  Aligned_cols=57  Identities=14%  Similarity=0.071  Sum_probs=41.8

Q ss_pred             CcHHHHHHHHHHH-cCcEEEcCCccceEEEcCCC------cEEEEEe----CCe--EEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEG------KVVGVTS----EGE--TAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~------~v~gV~~----~g~--~i~ad~VV~~~~~~  288 (419)
                      ..+.++|.+.+++ .|++|+++++|++|..++++      ++.+|.+    +|+  ++.||.||.+++-+
T Consensus       138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  207 (540)
T 1chu_A          138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGA  207 (540)
T ss_dssp             ----CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence            4677788888888 69999999999999983245      8888765    455  78999998766543

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=91.24  E-value=0.11  Score=47.18  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      |.+..+|+|||+|-.|.+.|..|+..|.  ++.++|.+.
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            5666899999999999999999998886  899999853

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.23  E-value=0.11  Score=45.92  Aligned_cols=33  Identities=18%  Similarity=0.104  Sum_probs=30.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..++|+|+|-.|..+|..|++.|.+|+|+.|+.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999998864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=91.19  E-value=0.41  Score=44.33  Aligned_cols=53  Identities=17%  Similarity=0.169  Sum_probs=43.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.|.+.+++.|++|+++++|++|+.  ++   .|++ +|++++||.||.+.+...
T Consensus       107 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          107 SHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccH
Confidence            46788888888889999999999999975  34   4555 788999999998776654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.19  E-value=0.084  Score=53.57  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=31.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|+++|++|+++|+++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999875

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=91.19  E-value=0.24  Score=47.65  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=33.8

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      ||||||||++||+||..|+++|.+|+|+||. ..||..
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s   37 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGST   37 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSG
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchH
Confidence            7999999999999999999999999999999 566553

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=91.16  E-value=0.48  Score=44.09  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=43.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE--eCCe--EEEcCEEEeCCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT--SEGE--TAKCKKVVCDPSYLP  289 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~--~~g~--~i~ad~VV~~~~~~~  289 (419)
                      ..+.+.|.+.+.+.|++|+++++|++|..++++.+ .|+  .+|+  +++||.||.+.+...
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~~S  163 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGFHG  163 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCCCc
Confidence            35777888888888999999999999987322333 344  3777  799999998776543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.14  E-value=0.12  Score=47.92  Aligned_cols=33  Identities=24%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..|+|+|+|-.|+.+|..|+..|.+|+++++++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999864

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=91.11  E-value=0.13  Score=45.67  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=29.0

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|..|...|..|++ |++|+++++++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            69999999999999999999 99999999875

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=91.06  E-value=0.12  Score=49.82  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=30.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|+++|++|+++++++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=90.99  E-value=0.08  Score=49.29  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             ceEEEECCCchHHHHhhccccCC-------CeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G-------~~V~vlE~~~~   38 (419)
                      .+|.|||+|..|.+.|..|+++|       ++|+++++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            36999999999999999999999       99999998765

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=90.99  E-value=0.11  Score=47.05  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCC--CeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~   37 (419)
                      +|.|||+|-.|.+.|..|+++|  .+|+++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            7999999999999999999999  7999999964

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=90.96  E-value=0.16  Score=45.50  Aligned_cols=33  Identities=15%  Similarity=0.097  Sum_probs=30.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      ..|+|||+|-.|..+|..|++.|. +|+|+.|+.
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            579999999999999999999997 999998863

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=90.86  E-value=0.11  Score=45.78  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCe-EEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|++.|++ |.++++++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            5799999999999999999999999 99999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.83  E-value=0.13  Score=49.60  Aligned_cols=32  Identities=31%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||+|..|...|..|+++|++|+++++++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=90.81  E-value=0.14  Score=44.43  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCC----eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL----KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~----~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|+++|+    +|+++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            479999999999999999999998    999999974

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=90.81  E-value=0.095  Score=55.27  Aligned_cols=37  Identities=19%  Similarity=0.070  Sum_probs=34.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch
Confidence            4799999999999999999999999999999988753

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=90.78  E-value=0.17  Score=44.20  Aligned_cols=33  Identities=9%  Similarity=0.077  Sum_probs=30.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|++.|++|.++++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            479999999999999999999999999999874

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=90.78  E-value=0.2  Score=48.47  Aligned_cols=49  Identities=18%  Similarity=0.158  Sum_probs=40.2

Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~  290 (419)
                      +.++++|++|+++++|++|..  ++++.+|.+ +|+++.||.||.+++..|+
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~--~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~  314 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEG--NEKVERVIDMNNHEYKVDALIFADGRRPD  314 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEEC--SSSCCEEEETTCCEEECSEEEECCCEEEC
T ss_pred             HHHHhCCcEEEeCCeeEEEec--CCceEEEEeCCCeEEEeCEEEECCCcCcC
Confidence            667788999999999999985  344556666 7889999999999887664

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.68  E-value=0.15  Score=45.18  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +|.|||+|..|.+.|..|+++|+  +|+++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            69999999999999999999998  999999864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=90.58  E-value=0.41  Score=47.56  Aligned_cols=39  Identities=28%  Similarity=0.414  Sum_probs=35.2

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC-CCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGG   41 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~-~~GG   41 (419)
                      .++||||||||++|++||..|++.|.+|+|+|+++ .+|+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            46999999999999999999999999999999985 4554

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.56  E-value=0.17  Score=42.80  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             eEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|+|+|| |..|...+..|.++|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            5999996 9999999999999999999999874

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=90.53  E-value=0.15  Score=48.67  Aligned_cols=34  Identities=18%  Similarity=0.118  Sum_probs=31.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|+|+|+|-.|..+|..|+..|.+|++.|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999864

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=90.42  E-value=0.6  Score=45.18  Aligned_cols=55  Identities=11%  Similarity=0.029  Sum_probs=43.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe---EEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE---TAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~---~i~ad~VV~~~~~~  288 (419)
                      ..+-+.|.+.+++.|++|+++++|++|..+ ++.++ |++ +++   +++||.||.+.+..
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~~~g~~~~~a~~vVgADG~~  165 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDE-GDHVV-VEVEGPDGPRSLTTRYVVGCDGGR  165 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEEC-SSCEE-EEEECSSCEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEE-EEEEcCCCcEEEEeCEEEEccCcc
Confidence            457778888888899999999999999985 66664 444 553   79999999776654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=90.39  E-value=0.15  Score=48.83  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ...|+|||+|-.|...|..|.+.|.+|+|++.+
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            457999999999999999999999999999985

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=90.32  E-value=0.14  Score=45.87  Aligned_cols=32  Identities=9%  Similarity=0.006  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +|.|||+|..|.+.|..|++.|+  +|+++|.++
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            69999999999999999999998  999999865

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.21  E-value=0.19  Score=46.41  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.6

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .|+|||||..|..+|..+.+.|++|+++|.++.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            699999999999999999999999999998764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.17  E-value=0.17  Score=47.11  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..|+|||+|..|+.+|..|...|.+|+++++++
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=90.10  E-value=0.16  Score=44.55  Aligned_cols=30  Identities=23%  Similarity=0.227  Sum_probs=28.3

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEecc
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~   35 (419)
                      +|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            689999999999999999999999999876

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=90.10  E-value=0.14  Score=45.69  Aligned_cols=32  Identities=13%  Similarity=0.112  Sum_probs=29.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|...|..|++.|++|++++ ++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            479999999999999999999999999998 54

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=90.09  E-value=0.3  Score=45.88  Aligned_cols=38  Identities=16%  Similarity=0.113  Sum_probs=34.6

Q ss_pred             ceEEEECCCchHHHHhhcccc---CCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~---~G~~V~vlE~~~~~GG~   42 (419)
                      .||+|||||++||++|..|++   .|++|+|+|+++..++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~   42 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFR   42 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceec
Confidence            389999999999999999999   99999999999976544

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=90.08  E-value=0.21  Score=44.54  Aligned_cols=34  Identities=29%  Similarity=0.334  Sum_probs=31.2

Q ss_pred             eEEEECC-CchHHHHhhccccCCCeEEEeccCCCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      +|+|.|| |..|...+.+|.++|++|+++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            6999998 999999999999999999999887654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=90.08  E-value=0.15  Score=45.22  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+++|||+|-.|.+.|..|.+.|.+|++++++.
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999999863

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=90.05  E-value=0.16  Score=46.20  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=32.7

Q ss_pred             CCCcceEEEECC-CchHHHHhhccccCCC-------eEEEeccCC
Q 014768            1 MDEEYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G~-------~V~vlE~~~   37 (419)
                      |.+..+|+|+|| |..|...+..|.++|+       +|.++|..+
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            666679999997 9999999999999996       899999753

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=90.03  E-value=0.15  Score=45.95  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +|.|||+|..|.+.|..|++.|.  +|.++|.++
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            69999999999999999999887  999999976

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=90.01  E-value=0.17  Score=46.21  Aligned_cols=33  Identities=9%  Similarity=0.018  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+++|+|.|-.|...|..|.+.|+ |+++|+++.
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~  148 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENV  148 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChh
Confidence            479999999999999999999999 999999764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=89.99  E-value=0.23  Score=45.17  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=33.1

Q ss_pred             CCCcceEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |++...|+|.|| |..|...+..|+++|++|+++.++..
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            555568999996 99999999999999999999998654

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=89.94  E-value=0.17  Score=53.75  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             eEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~   38 (419)
                      +|+|||||..|+-+|..|++.|. +|+++++.+.
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            79999999999999999999996 9999999873

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=89.88  E-value=0.63  Score=45.04  Aligned_cols=55  Identities=13%  Similarity=0.001  Sum_probs=43.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe---EEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE---TAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~---~i~ad~VV~~~~~~  288 (419)
                      ..+-+.|.+.+++.|++|+++++|++|..+ ++.++ |++ +++   +++||.||.+.+..
T Consensus       106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~~~g~~~~~a~~vVgADG~~  164 (500)
T 2qa1_A          106 SVTETHLEQWATGLGADIRRGHEVLSLTDD-GAGVT-VEVRGPEGKHTLRAAYLVGCDGGR  164 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCEEEEEEEE-TTEEE-EEEEETTEEEEEEESEEEECCCTT
T ss_pred             HHHHHHHHHHHHHCCCEEECCcEEEEEEEc-CCeEE-EEEEcCCCCEEEEeCEEEECCCcc
Confidence            357777888888899999999999999984 66554 444 543   79999999776654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.85  E-value=0.23  Score=44.30  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..++|+|+|-.|.++|..|++.| +|+++.++.
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            46999999999999999999999 999998863

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=89.83  E-value=0.19  Score=50.91  Aligned_cols=39  Identities=15%  Similarity=0.134  Sum_probs=34.9

Q ss_pred             ceEEEEC--CCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLG--TGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIG--aGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      .+|+|||  +|..|+-+|..|++.|.+|+++++.+.+....
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~  564 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT  564 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc
Confidence            4699999  99999999999999999999999998876543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=89.81  E-value=0.47  Score=44.45  Aligned_cols=53  Identities=17%  Similarity=0.153  Sum_probs=42.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      ..+.+.|.+.+++  ++|+++++|++|+.+ ++.+. |++ +|++++||.||.+.+..
T Consensus       127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~  180 (407)
T 3rp8_A          127 AELQREMLDYWGR--DSVQFGKRVTRCEED-ADGVT-VWFTDGSSASGDLLIAADGSH  180 (407)
T ss_dssp             HHHHHHHHHHHCG--GGEEESCCEEEEEEE-TTEEE-EEETTSCEEEESEEEECCCTT
T ss_pred             HHHHHHHHHhCCc--CEEEECCEEEEEEec-CCcEE-EEEcCCCEEeeCEEEECCCcC
Confidence            4577778887766  899999999999984 66654 555 88899999999877665

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=89.31  E-value=0.062  Score=45.21  Aligned_cols=34  Identities=26%  Similarity=0.123  Sum_probs=30.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||+|-.|...|..|.+.|++|++++++..
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            4699999999999999999999999999988654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=89.75  E-value=0.19  Score=46.02  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..|.|||+|..|.+.|..|++.|++|+++++++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            469999999999999999999999999999875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=89.75  E-value=0.2  Score=43.01  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=30.9

Q ss_pred             cceEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|+|.|| |..|...+..|+++|++|+++.+++
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            357999998 9999999999999999999999864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.72  E-value=0.21  Score=42.36  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             eEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|+|.|| |..|...+..|.++|++|+++.|++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5999998 9999999999999999999998863

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=89.71  E-value=0.77  Score=42.38  Aligned_cols=55  Identities=25%  Similarity=0.378  Sum_probs=44.3

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~--~i~ad~VV~~~~~~  288 (419)
                      .+-+.|.+.+++.|++++++++|+.+.. ++++++++..  +++  +++||.||.+.+..
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~  161 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGFE  161 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCccc
Confidence            4667788888899999999999999998 4888887765  443  68899999776654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=89.69  E-value=0.16  Score=45.62  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCC--eEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~~   38 (419)
                      .+|.|||||..|...|..|+.+|+  +|.++|.+..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            579999999999999999999998  9999999864

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=89.64  E-value=0.21  Score=48.37  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=30.1

Q ss_pred             ceEEEECCCchHHH-HhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~-aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.|||.|-+|++ +|..|.+.|++|++.|.+.
T Consensus        23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            57999999999997 6999999999999999864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=89.53  E-value=0.17  Score=44.79  Aligned_cols=33  Identities=15%  Similarity=0.051  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      ..++|||+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            579999999999999999999998 999998875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=89.52  E-value=0.19  Score=45.64  Aligned_cols=33  Identities=15%  Similarity=0.106  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      .+|.|||+|..|.++|..|+..|.  +|.++|.+.
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            589999999999999999999997  999999854

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=89.52  E-value=0.22  Score=44.79  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             cceEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...|+|.|| |..|...+..|.++|++|+++.++..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            457999999 99999999999999999999998765

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=89.43  E-value=0.6  Score=46.77  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=33.4

Q ss_pred             cceEEEECCCchHHHHhhccc---c-CCCeEEEeccCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLS---V-DGLKVLHMDRNDYY   39 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La---~-~G~~V~vlE~~~~~   39 (419)
                      ++||||||||++||+||..|+   + +|.+|+||||.+..
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            489999999999999999999   6 89999999999864

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=89.39  E-value=0.25  Score=44.20  Aligned_cols=38  Identities=13%  Similarity=0.156  Sum_probs=32.0

Q ss_pred             CCCcceEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |.+...|+|+|| |.-|...+..|.++|++|+++.|+..
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   39 (308)
T 1qyc_A            1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   39 (308)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcc
Confidence            543457999997 99999999999999999999998753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=89.38  E-value=0.24  Score=44.49  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999864

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=89.37  E-value=0.21  Score=45.26  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=30.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      ..+|+|||+|..|.+.|..|+..|.  +|.++|.+.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            3689999999999999999998885  899999864

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=89.26  E-value=0.29  Score=43.48  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=29.6

Q ss_pred             cceEEEECCC-chHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaG-i~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..+|+|||+| +.|.-+|..|.+.|..|+++.++
T Consensus       165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            3589999999 68999999999999999999753

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=89.22  E-value=0.15  Score=47.27  Aligned_cols=39  Identities=26%  Similarity=0.393  Sum_probs=34.5

Q ss_pred             cceEEEECC-CchHHHHhhccccCCC---eEEEeccCC-CCCCc
Q 014768            4 EYDVIVLGT-GLKECILSGLLSVDGL---KVLHMDRND-YYGGE   42 (419)
Q Consensus         4 ~~dvvIIGa-Gi~Gl~aA~~La~~G~---~V~vlE~~~-~~GG~   42 (419)
                      ..+|+|||+ |..|+.|+..+..-|.   +|+++|.+. .-||+
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            358999999 9999999999999997   999999987 55665

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=89.14  E-value=0.25  Score=44.12  Aligned_cols=34  Identities=26%  Similarity=0.226  Sum_probs=31.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=89.01  E-value=0.35  Score=42.63  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=29.4

Q ss_pred             cceEEEECCC-chHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaG-i~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..+|+|||+| +.|.-+|..|.+.|..|+++.+.
T Consensus       159 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  192 (288)
T 1b0a_A          159 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF  192 (288)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3689999999 67999999999999999999754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=88.97  E-value=0.28  Score=44.56  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=30.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCC--eEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~   36 (419)
                      ..+|.|||+|..|.++|..|+.+|.  +|.++|.+
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            3689999999999999999999997  89999985

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=88.94  E-value=0.28  Score=43.95  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=32.0

Q ss_pred             CCCcceEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      |.+...|+|+|| |..|...+..|.++|++|+++.|+..
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   39 (313)
T 1qyd_A            1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   39 (313)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCc
Confidence            544457999996 99999999999999999999999753

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=88.93  E-value=0.32  Score=43.14  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=29.3

Q ss_pred             cceEEEECC-CchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..+++|||. |+.|..+|..|.+.|..|+++.++
T Consensus       165 Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          165 GKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            358999995 579999999999999999999874

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=88.82  E-value=0.3  Score=46.63  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|+|+|+|-.|...|..|++.|++|++++++.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            3579999999999999999999999999998863

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=88.78  E-value=0.2  Score=44.58  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             ceEEEECCCchHHHHhhccccC--CCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~   37 (419)
                      .+|.|||+|..|.+.|..|+++  |++|+++++++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            5799999999999999999987  68999999864

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=88.78  E-value=0.24  Score=43.42  Aligned_cols=32  Identities=28%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +++|||+|-.|...|..|.+.|.+|++++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=88.77  E-value=0.47  Score=45.68  Aligned_cols=43  Identities=26%  Similarity=0.374  Sum_probs=37.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC---------CCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND---------YYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~---------~~GG~~~t   45 (419)
                      .++||+|||||++|++||..|++.|++|+|+||+.         .+||.|..
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~   59 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVN   59 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecc
Confidence            46999999999999999999999999999999521         37887753

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=88.74  E-value=0.24  Score=48.89  Aligned_cols=35  Identities=17%  Similarity=0.364  Sum_probs=32.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+++|||+|-.|...|..|.+.|++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            47999999999999999999999999999998763

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=88.72  E-value=0.27  Score=47.09  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             ceEEEECCCchHHHHhhccccC--------------------C-CeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--------------------G-LKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--------------------G-~~V~vlE~~~~~   39 (419)
                      .+|+|||+|..|+-+|..|++.                    | .+|+|+++++..
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            4799999999999999999874                    6 499999997654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=88.71  E-value=0.26  Score=42.96  Aligned_cols=32  Identities=22%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             eEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .++|||+|-+|-+++..|.+.|. +|+|+.|+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999998 999999864

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=88.70  E-value=0.35  Score=42.37  Aligned_cols=33  Identities=18%  Similarity=0.101  Sum_probs=29.3

Q ss_pred             cceEEEECCC-chHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaG-i~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..+++|||+| +.|..+|..|.+.|..|+++.++
T Consensus       150 Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          150 ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             SCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3589999976 79999999999999999999863

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=88.68  E-value=0.28  Score=44.85  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=30.4

Q ss_pred             CcceEEEECC-CchHHHHhhccccCCC--eEEEeccCC
Q 014768            3 EEYDVIVLGT-GLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGa-Gi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      ...+|+|||+ |-.|.++|+.|+..|.  +|+++|.+.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3468999998 9999999999999884  899999853

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=88.66  E-value=0.29  Score=41.34  Aligned_cols=32  Identities=22%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             eEEEEC-CCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|+|.| +|..|...+..|.++|++|+++.|++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV   34 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            699999 59999999999999999999999975

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=88.65  E-value=0.31  Score=44.02  Aligned_cols=32  Identities=31%  Similarity=0.210  Sum_probs=29.8

Q ss_pred             eEEEECC-CchHHHHhhccccCC--CeEEEeccCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G--~~V~vlE~~~   37 (419)
                      +|+|||| |-.|.+.|..|++.|  .+|.++|.+.
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            7999998 999999999999998  6999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	419
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-107
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-21
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-61
d1d5ta2	97	d.16.1.6 (A:292-388) Guanine nucleotide dissociati	1e-57
d2bcgg3	98	d.16.1.6 (G:302-399) Guanine nucleotide dissociati	3e-55
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-48
d1vg0a2	113	d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra	2e-29
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-06
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	4e-04

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  322 bits (827), Expect = e-107
 Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 21/289 (7%)

Query: 65  LGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDME 124
           +   R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +
Sbjct: 216 IKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRAD 275

Query: 125 ALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFI 184
              S  + + EKR   KF  +  +Y+E  P  +   + T  T  E +    L  N   F+
Sbjct: 276 VFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYRAYEGT--TFSEYLKTQKLTPNLQYFV 332

Query: 185 GHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAV 244
            H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV
Sbjct: 333 LHSIAMTSETTS---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAV 388

Query: 245 YGGTYMLNKPECKVEFDEEGKVVG--VTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAI 302
           +GG Y L      +  D+E +     +   G+    K  + + SYL        RV+R  
Sbjct: 389 FGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT--CSRVSRDC 446

Query: 303 AIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCC-SYSHNVAPKGKF 350
                P        S   +      G  +D  +    +    + P   F
Sbjct: 447 -YNDLP--------SNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDF 486

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.4 bits (234), Expect = 1e-21
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query: 3  EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP 62
           ++DVIV+GTGL E I++   S  G +VLH+D   YYGG  +S +   L    +  ++  
Sbjct: 5  SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENN 64

Query: 63 AHLGSSRDYNVD 74
            +  +  +   
Sbjct: 65 DVVTENSMWQEQ 76

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  198 bits (504), Expect = 2e-61
 Identities = 159/296 (53%), Positives = 222/296 (75%), Gaps = 6/296 (2%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N  
Sbjct: 2   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 61

Query: 59  --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 62  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 121

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 122 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 181

Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+    PY+YP+YGLGELPQ
Sbjct: 182 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKS-PYLYPMYGLGELPQ 240

Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNK 291
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K
Sbjct: 241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK 296

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 97

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  181 bits (462), Expect = 1e-57
 Identities = 51/97 (52%), Positives = 70/97 (72%)

Query: 293 RKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIA 352
           RK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA
Sbjct: 1   RKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIA 60

Query: 353 FVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYE 389
             ST  ET  P+ E++P + LL P+D+ F  I D YE
Sbjct: 61  IASTTVETTDPEKEVEPALGLLEPIDQKFVAISDLYE 97

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 98

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  175 bits (446), Expect = 3e-55
 Identities = 48/98 (48%), Positives = 70/98 (71%), Gaps = 1/98 (1%)

Query: 293 RKVG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFI 351
           +  G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++
Sbjct: 1   KSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYL 60

Query: 352 AFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYE 389
           A +ST  ETD P  EL+P   LLGP++E F  I + +E
Sbjct: 61  AIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELFE 98

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  165 bits (417), Expect = 3e-48
 Identities = 184/293 (62%), Positives = 239/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI-QLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  + +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +  +   KVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIMENG-KVVGVKSEGEVARCKQLICDPSYVPDRV 293

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (272), Expect = 2e-29
 Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 297 RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVST 356
           +++RA+ I    +  T+    V ++    +      + +     S     KG ++  ++ 
Sbjct: 4   QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTC 63

Query: 357 EAETDHPQTELKPGID-LLGPVDEIFYDIYDRYEP 390
              +   + +L+  +  L  P  EI  +     +P
Sbjct: 64  M-SSKTAREDLERVVQKLFTPYTEIEAENEQVEKP 97

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 42/290 (14%), Positives = 94/290 (32%), Gaps = 38/290 (13%)

Query: 6   DVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
            V+++G G+     +GL     L+  G +V  ++ ++  GG   +        R      
Sbjct: 32  HVVIVGAGM-----AGLSAAYVLAGAGHQVTVLEASERPGGRVRTY-------RNEEAGW 79

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
                         ++ ++I      +      +   + + K +        G+V K P 
Sbjct: 80  YANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKV----GEVKKDPG 135

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE-LIAKYGLDDN 179
                +K    G    +   +    V +  +    ++        +T+E LI +  L   
Sbjct: 136 LLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPG 195

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            +D IG    L  +D       ++++K   +       F     +   + G+ +LP A  
Sbjct: 196 AVDMIGD---LLNEDSGYYVSFIESLKHDDI-------FAYEKRFDEIVDGMDKLPTAMY 245

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGV---TSEGETAKCKKVVCDPS 286
           R           N    K++ +++   V     + E  +     V+   +
Sbjct: 246 RD---IQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT 292

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 1  MDEEYDVIVLGTGLKECILSGLLSVDGLKVL 31
          MD +YDV+++G+G   C  +  L   G KV 
Sbjct: 1  MDIKYDVVIVGSGPIGCTYARELVGAGYKVA 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	419
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.98
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.88
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.86
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.81
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.73
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.61
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.6
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.59
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.56
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.54
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.52
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.5
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.45
d1d5ta2	97	Guanine nucleotide dissociation inhibitor, GDI {Co	99.43
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.42
d2bcgg3	98	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.42
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.41
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.35
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.24
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.1
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.06
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.97
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.94
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.91
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.91
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.9
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.9
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.88
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.88
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.87
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.83
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.8
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.8
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.76
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.73
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.71
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.66
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.66
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.66
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.66
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.65
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.65
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.63
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.62
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.62
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.6
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.58
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.57
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.55
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.55
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.55
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.54
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.53
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.52
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.51
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.47
d1vg0a2	113	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	98.47
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.43
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.41
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.4
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.38
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.29
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.28
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.1
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.99
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.96
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.96
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.91
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.9
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.9
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.88
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.87
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.86
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.74
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.71
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.69
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.59
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.53
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.51
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.49
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.46
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.42
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.36
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.35
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.35
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.28
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.25
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.25
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.22
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.2
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.19
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.18
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.16
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.02
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.02
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.96
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.95
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.91
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.91
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.86
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.84
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.84
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.8
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.76
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.76
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.75
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.65
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.64
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.59
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.56
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.51
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.37
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.32
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.24
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.21
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.14
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.14
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.12
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.92
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.87
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.83
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.74
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.65
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.58
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.57
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.35
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.34
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.11
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.92
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.74
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.57
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.56
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.47
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.27
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.27
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.18
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.87
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.78
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.73
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.63
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.63
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.63
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.49
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.4
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.37
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.21
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.15
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.14
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.12
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.08
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	93.03
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.99
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.91
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.89
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.87
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	92.86
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	92.86
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.85
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.79
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.5
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.44
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.31
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.15
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.73
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.7
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.56
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	91.36
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	91.29
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.1
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.86
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	90.79
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.74
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.68
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.57
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.26
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.17
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.12
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.12
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.09
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.78
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.69
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.68
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.26
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.16
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.98
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.79
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	88.74
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.62
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.48
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.17
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.07
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	87.69
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	87.51
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	87.18
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	86.85
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.19
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.96
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	85.35
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	85.32
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	85.22
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.09
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.07
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.06
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.03
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	84.76
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	84.58
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	84.37
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	84.31
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	83.83
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	83.81
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	83.45
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.37
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	82.99
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	82.66
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	82.32
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	82.28
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.22
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	82.14
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.69
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.62
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	81.59
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.89
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.45

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.3e-41  Score=316.38  Aligned_cols=283  Identities=31%  Similarity=0.608  Sum_probs=248.9

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCC---------------------
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQP---------------------   61 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~---------------------   61 (419)
                      ++|||||+|+|+..+..|+.|++.|++|+.+|+|+++||.+.++++.++.+|+......                     
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~~~   84 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEAI   84 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEEE
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccchhc
Confidence            57999999999999999999999999999999999999999999999998876310000                     


Q ss_pred             ----------------------------------------------------------------------CC--------
Q 014768           62 ----------------------------------------------------------------------PA--------   63 (419)
Q Consensus        62 ----------------------------------------------------------------------~~--------   63 (419)
                                                                                            +.        
T Consensus        85 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  164 (491)
T d1vg0a1          85 PLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPGP  164 (491)
T ss_dssp             EBCSSCCCEEEEEEEECSCC------------------------------------------------------------
T ss_pred             ccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCc
Confidence                                                                                  00        


Q ss_pred             --------------------------------------------------CCCCCcceEEccCcceeecCchhhHHHHhc
Q 014768           64 --------------------------------------------------HLGSSRDYNVDMIPKFIIANGALVRVLIHT   93 (419)
Q Consensus        64 --------------------------------------------------~~g~~~~~~~d~gp~~~~~~~~~~~~l~~~   93 (419)
                                                                        -++.++.|++|+.|+++++.+.++++|+.+
T Consensus       165 e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~Pk~l~a~g~lv~~Li~S  244 (491)
T d1vg0a1         165 ESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKS  244 (491)
T ss_dssp             --------------------------------------------CCCHHHHHHTGGGCCEESSCCCEESSSHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccchheecccHHHHHHHHc
Confidence                                                              023468999999999999999999999999


Q ss_pred             CCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccccCCcccHHHHHHH
Q 014768           94 DVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAK  173 (419)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (419)
                      ++.+|++|+.++..|+|.+|++.++|.++.+.|.+.++++++|+.+++|+.++..+.+ ++..++.  ....++.+|+++
T Consensus       245 ~v~rYlEFk~v~~~~v~~~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~-~~~~~~~--~~~~~~~e~l~~  321 (491)
T d1vg0a1         245 NVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYRA--YEGTTFSEYLKT  321 (491)
T ss_dssp             TGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CHHHHHT--TTTSBHHHHHTT
T ss_pred             ChhhheeEEEeceEEEecCCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccC-Ccccccc--ccCCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998864 3333333  457899999999


Q ss_pred             cCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCC
Q 014768          174 YGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNK  253 (419)
Q Consensus       174 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~  253 (419)
                      +++++.+.+++.++++++..+.+   +..+++.++.+|+.|+++| |++||+||.||.+.|+|+|+|.++..||++++|+
T Consensus       322 ~~l~~~~~~~i~~aial~~~~~~---~~~~~l~ri~~yl~Slg~y-G~spflyp~YG~gEipQ~FcR~~AV~Gg~Y~L~~  397 (491)
T d1vg0a1         322 QKLTPNLQYFVLHSIAMTSETTS---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRH  397 (491)
T ss_dssp             SSSCHHHHHHHHHHTTC--CCSC---BHHHHHHHHHHHHHHTTSS-SSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSC
T ss_pred             cCCChHHHHHHHhheeccCCCCc---cHHHHHHHHHHHHHHHHhh-CCCCeEeecCCcchHHHHHHHHHHhcCcEEEcCC
Confidence            99999999999999998765543   5678889999999999999 8999999999999999999999999999999999


Q ss_pred             ccceEEEc-CCCcEEEEEe-CCeEEEcCEEEeCCCCCCccc
Q 014768          254 PECKVEFD-EEGKVVGVTS-EGETAKCKKVVCDPSYLPNKV  292 (419)
Q Consensus       254 ~V~~I~~~-~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~~~  292 (419)
                      +|.+|.++ +++++.+|.+ +|+++.|+.||+++.|.|..+
T Consensus       398 ~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~~  438 (491)
T d1vg0a1         398 SVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT  438 (491)
T ss_dssp             CEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTT
T ss_pred             ccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCccc
Confidence            99999985 4788989887 799999999999999887643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-39  Score=291.08  Aligned_cols=289  Identities=55%  Similarity=1.005  Sum_probs=231.6

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCC----CCCCCCcceEEccC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP----AHLGSSRDYNVDMI   76 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~----~~~g~~~~~~~d~g   76 (419)
                      |+++|||||||||++||+||++|+++|++|+||||++.+||+++|++.+++...+.......    ...+...+|.+|++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   81 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   81 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccC
Confidence            89999999999999999999999999999999999999999999999877665554431100    11234457899999


Q ss_pred             cceeecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCc
Q 014768           77 PKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT  156 (419)
Q Consensus        77 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (419)
                      |+++...+.+.+.+...+...++.+..++..+.+.++...++|....+.+.........++.+.+|...+..+.......
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (297)
T d2bcgg1          82 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLST  161 (297)
T ss_dssp             CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGG
T ss_pred             cccccCCCcceeeeeeccccccccccccCcccccccCCccccccchhhhhhccccccccchhhhhhhhhhhhhhhccccc
Confidence            99999998888888888888888999988888888999999988777777777777777777888877777665332222


Q ss_pred             cccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHH
Q 014768          157 HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ  236 (419)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~  236 (419)
                      .....+...++.++++..++++.+++++...........+...+....+.++..+..+...+ +..++++|+||++.|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~  240 (297)
T d2bcgg1         162 HQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ  240 (297)
T ss_dssp             STTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCTTHHHH
T ss_pred             hhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccccchhhhhhhhhhhhhhhccccc-ccCcceeccCcHHHHHH
Confidence            22334566789999999999888888776655555445554556656666666666666655 56679999999999999


Q ss_pred             HHHHHHHHcCcEEEcCCccceEEEc-CCCcEEEEEeCCeEEEcCEEEeCCCCCCc
Q 014768          237 AFARLSAVYGGTYMLNKPECKVEFD-EEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       237 al~~~~~~~G~~i~~~~~V~~I~~~-~~~~v~gV~~~g~~i~ad~VV~~~~~~~~  290 (419)
                      +|++.++++|++|++|++|++|..+ +++++++|+++|++++||+||+|++|.|+
T Consensus       241 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhccC
Confidence            9999999999999999999999864 25678888889999999999999998875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.6e-22  Score=184.74  Aligned_cols=251  Identities=18%  Similarity=0.227  Sum_probs=142.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~   85 (419)
                      ||||||||++||+||++|+++|++|+||||++++||+++|....                   .++.+|+|++++....+
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~-------------------~g~~~d~G~~~~~~~~~   61 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ-------------------KVKYVDLGGSYVGPTQN   61 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCT-------------------TTSCEESSCCEECTTCH
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECC-------------------CCcEEeCCceEeCCCCh
Confidence            89999999999999999999999999999999999999987532                   26789999999876654


Q ss_pred             -hhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccC----CCCccc-c
Q 014768           86 -LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN----DPKTHE-G  159 (419)
Q Consensus        86 -~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~  159 (419)
                       +.+++.+.++... ............+......... .   .. ............+...+......    .+.... .
T Consensus        62 ~~~~l~~~lgl~~~-~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (383)
T d2v5za1          62 RILRLAKELGLETY-KVNEVERLIHHVKGKSYPFRGP-F---PP-VWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLA  135 (383)
T ss_dssp             HHHHHHHHTTCCEE-ECCCSSEEEEEETTEEEEECSS-S---CC-CCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTH
T ss_pred             HHHHHHHHcCCcce-eccCccceEEecCccccccccc-c---cc-hhhhhhhhhHHHHHHHHHHhhhhcccccccchhhh
Confidence             4444555565421 1111111112223333222211 0   00 01111112222333332222111    110000 0


Q ss_pred             ccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHH--HHhhhccCCCeEEEecCCcCcHHHH
Q 014768          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA--ESIARFQGGSPYIYPLYGLGELPQA  237 (419)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~p~gG~~~l~~a  237 (419)
                      ..+...++.+++...........+.............................  ..............+.+|+..++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (383)
T d2v5za1         136 EEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSER  215 (383)
T ss_dssp             HHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHH
T ss_pred             hhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccchhHHHHH
Confidence            02345677888887766665554443222211111111122222221111100  0011111233446788999999998


Q ss_pred             HHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          238 FARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       238 l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      +++   +.|++|++|++|++|..+ ++++. |++ +|++++||+||++..
T Consensus       216 l~~---~~g~~i~~~~~v~~I~~~-~~~v~-v~~~~g~~~~ad~vI~a~p  260 (383)
T d2v5za1         216 IMD---LLGDRVKLERPVIYIDQT-RENVL-VETLNHEMYEAKYVISAIP  260 (383)
T ss_dssp             HHH---HHGGGEEESCCEEEEECS-SSSEE-EEETTSCEEEESEEEECSC
T ss_pred             HHH---HcCCeEEecCcceEEEec-CCeEE-EEECCCCEEECCEEEECCC
Confidence            865   459999999999999984 77775 555 999999999999873

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.86  E-value=6.6e-21  Score=174.13  Aligned_cols=246  Identities=14%  Similarity=0.104  Sum_probs=130.5

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~   85 (419)
                      ||+|||||++||+||++|+++|++|+||||++++||+++|+..+                    ++.+|.|++++....+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~--------------------g~~~d~G~~~~~~~~~   61 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA--------------------GYLVEQGPNSFLDREP   61 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEET--------------------TEEEESSCCCEETTCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeC--------------------CEEEecCceEEecCCH
Confidence            89999999999999999999999999999999999999998753                    7999999999987765


Q ss_pred             hhHHHHh-cCCcceeeEEEeccee--EEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccccC
Q 014768           86 LVRVLIH-TDVTKYLYFKAVDGSF--VYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDL  162 (419)
Q Consensus        86 ~~~~l~~-~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (419)
                      .+..+.+ .++...+.........  ...........................   ....   ..........     ..
T Consensus        62 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~-----~~  130 (347)
T d2ivda1          62 ATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGA---RLRV---AGELFSRRAP-----EG  130 (347)
T ss_dssp             HHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHTCSSSCHHH---HHHH---HGGGGCCCCC-----TT
T ss_pred             HHHHHHHHhcccccceeccccccceeeeccccccccccchhhhhhhhhccchh---hHHH---Hhhhhhhhcc-----cc
Confidence            4444443 4555433222211111  122233333322223233333322211   1111   1111100000     11


Q ss_pred             CcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHH-----------HH---H-------hh-hccC
Q 014768          163 TRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLY-----------AE---S-------IA-RFQG  220 (419)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~-------~~-~~~g  220 (419)
                      ...++.+++.................................+..+...           ..   .       .. ....
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (347)
T d2ivda1         131 VDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKL  210 (347)
T ss_dssp             CCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCC
T ss_pred             ccccHHHHHHhhhhcchhccccchhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhccccccccccccc
Confidence            2344555444332211111111111100000000000110000000000           00   0       00 0001


Q ss_pred             CCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--eEEEcCEEEeCCC
Q 014768          221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPS  286 (419)
Q Consensus       221 ~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g--~~i~ad~VV~~~~  286 (419)
                      ......+.+|++.++++|++.+   |++|++|++|++|..+ ++++..+.. +|  +++.||.||++++
T Consensus       211 ~~~~~~~~~g~~~~~~~l~~~~---g~~i~~~~~V~~I~~~-~~~~~v~~~~~~~~~~~~ad~VV~a~p  275 (347)
T d2ivda1         211 SGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE-DGGWRLIIEEHGRRAELSVAQVVLAAP  275 (347)
T ss_dssp             CCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC---CCEEEEEETTEEEEEECSEEEECSC
T ss_pred             cCcccccCCchHHHHHHHHHHh---hcccccCCEEEEEEEe-CCeEEEEEEcCCeEEEEECCEEEECCC
Confidence            3345788899999999987655   8999999999999984 666554444 44  5799999999874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.81  E-value=3.1e-19  Score=165.19  Aligned_cols=245  Identities=19%  Similarity=0.233  Sum_probs=133.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      ..+|+|||||++||+||++|+++|++|+||||++.+||++.|+..+                  ..++.+|.|++++...
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~------------------~~g~~~d~G~~~~~~~   91 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNE------------------EAGWYANLGPMRLPEK   91 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEET------------------TTTEEEESSCCCEETT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecC------------------CCCceeccCceeecCc
Confidence            3689999999999999999999999999999999999999987642                  1379999999998876


Q ss_pred             chhhHHHH-hcCCcceeeEEEe-cceeEEeCCeEEEecCC--hhhhhccCCC-----ChHh---HHHHHHHHHHHhhccc
Q 014768           84 GALVRVLI-HTDVTKYLYFKAV-DGSFVYNKGKVHKVPAT--DMEALKSPLM-----GIFE---KRRARKFFIYVQDYDE  151 (419)
Q Consensus        84 ~~~~~~l~-~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~--~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~  151 (419)
                      .+.+..+. +.++.. ..+... ...+.+.++........  ........+.     ....   ..........+.....
T Consensus        92 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
T d2iida1          92 HRIVREYIRKFDLRL-NEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNC  170 (370)
T ss_dssp             CHHHHHHHHHTTCCE-EEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCH
T ss_pred             cHHHHHHHHHhCCcc-ceeeccCCceEEecCCccccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            65444443 344432 122211 22233444443332110  0000000000     0000   0111111111111100


Q ss_pred             CCCCccccccCCcccHHHHHHHcC-CChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCC
Q 014768          152 NDPKTHEGMDLTRVTTRELIAKYG-LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (419)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG  230 (419)
                        .....  .+...+..+++.... ........+....   ................       ...+.....+.++.+|
T Consensus       171 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  236 (370)
T d2iida1         171 --SYILN--KYDTYSTKEYLIKEGDLSPGAVDMIGDLL---NEDSGYYVSFIESLKH-------DDIFAYEKRFDEIVDG  236 (370)
T ss_dssp             --HHHHH--HHTTSBHHHHHHHTSCCCHHHHHHHHHHT---TCGGGTTSBHHHHHHH-------HHHHTTCCCEEEETTC
T ss_pred             --hhhhh--hccchhHHHHHHHhccccHHHHHHhhccc---cccchhhhHHHhhhhh-------hhhhccccccccchhh
Confidence              00000  112344555554433 2332222222111   1111111111111100       1111124456789999


Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE-e---CCeEEEcCEEEeCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-S---EGETAKCKKVVCDP  285 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~-~---~g~~i~ad~VV~~~  285 (419)
                      +..++++|++   +.|++|++|++|++|..+ ++++..+. .   ++++++||.||+++
T Consensus       237 ~~~l~~~l~~---~~g~~i~~~~~V~~I~~~-~~~v~v~~~~~~~~~~~~~aD~VI~A~  291 (370)
T d2iida1         237 MDKLPTAMYR---DIQDKVHFNAQVIKIQQN-DQKVTVVYETLSKETPSVTADYVIVCT  291 (370)
T ss_dssp             TTHHHHHHHH---HTGGGEESSCEEEEEEEC-SSCEEEEEECSSSCCCEEEESEEEECS
T ss_pred             HHHHHHHHHH---hcCCccccCceEEEEEEe-CCeEEEEEEecCCCeEEEEeeEEEecC
Confidence            9999998864   568999999999999995 67665432 2   45789999999987

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.73  E-value=1e-17  Score=153.11  Aligned_cols=73  Identities=19%  Similarity=0.181  Sum_probs=61.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~   84 (419)
                      .+|+|||||++||+||++|+++|++|+||||++++||+++|+..+                    ++.+|.|++++....
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~--------------------g~~~d~G~~~~~~~~   61 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD--------------------GLIWDEGANTMTESE   61 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEET--------------------TEEEESSCCCBCCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccC--------------------CEEEecCceEEeCCC
Confidence            479999999999999999999999999999999999999998753                    799999999998766


Q ss_pred             hhhHHH-HhcCCcc
Q 014768           85 ALVRVL-IHTDVTK   97 (419)
Q Consensus        85 ~~~~~l-~~~~~~~   97 (419)
                      +.+..+ .+.++..
T Consensus        62 ~~~~~~~~~~~~~~   75 (373)
T d1seza1          62 GDVTFLIDSLGLRE   75 (373)
T ss_dssp             HHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHhCCcc
Confidence            544444 3345443

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.65  E-value=3.2e-16  Score=140.44  Aligned_cols=64  Identities=11%  Similarity=0.159  Sum_probs=52.3

Q ss_pred             EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      .+.|.+|   ...+..+|.+.+++.|++++++++|++|+.+ ++++ .|++++.++.||+||.+++.+.
T Consensus       139 ~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~V~t~~g~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         139 IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETANGSYTADKLIVSMGAWN  205 (281)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETTEEEEEEEEEECCGGGH
T ss_pred             eeccccccccccccccccccccccccccccCCcEEEEEEEE-CCEE-EEEECCcEEEcCEEEECCCCcc
Confidence            3445555   2689999999999999999999999999994 7775 5788666899999998887663

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.61  E-value=5.2e-16  Score=138.55  Aligned_cols=66  Identities=12%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCc
Q 014768          223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (419)
Q Consensus       223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~  290 (419)
                      +.+.|.+|   ...+.++|.+.++++|++|+.+++|++|+.  ++++++|+++.++|.||.||.+++.+..
T Consensus       139 ~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g~i~a~~vV~AaG~~s~  207 (276)
T d1ryia1         139 ASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSGDVWANHVVVASGVWSG  207 (276)
T ss_dssp             EEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTEEEEEEEEEECCGGGTH
T ss_pred             EEEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCCeEEEcCEEEECCCccHH
Confidence            44566666   457899999999999999999999999986  4556789887778999999998887643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.60  E-value=6.9e-15  Score=133.19  Aligned_cols=64  Identities=20%  Similarity=0.215  Sum_probs=54.9

Q ss_pred             EEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (419)
Q Consensus       225 ~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~  289 (419)
                      +.|.+|   ...++.+|.+.+++.|++|+.+++|++|+. +++++++|.++.++++||+||.+++.+.
T Consensus       138 ~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         138 HVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADGVIPADIVVSCAGFWG  204 (305)
T ss_dssp             EETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             ecccccccchhhhhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccceeEECCEEEEecchhH
Confidence            344444   357899999999999999999999999999 4999999999777899999999887764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.59  E-value=3.6e-15  Score=131.05  Aligned_cols=61  Identities=20%  Similarity=0.262  Sum_probs=50.8

Q ss_pred             EecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       226 ~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                      +|... ...+.+.|.+.+++.|++|+++++|++|..+ ++++.+|.+ +|++++||.||.+.+-
T Consensus       103 ~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~AtGg  165 (251)
T d2i0za1         103 FPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIAVGG  165 (251)
T ss_dssp             EETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEECCCC
T ss_pred             ecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEEccCC
Confidence            44433 3568899999999999999999999999984 888888887 8899999998876643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=9.5e-15  Score=128.51  Aligned_cols=62  Identities=16%  Similarity=0.261  Sum_probs=48.2

Q ss_pred             EEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCC-cEE-EEEeCCeEEEcCEEEeCCC
Q 014768          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEG-KVV-GVTSEGETAKCKKVVCDPS  286 (419)
Q Consensus       225 ~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~-~v~-gV~~~g~~i~ad~VV~~~~  286 (419)
                      .++......+.+.|.+.+++.|++|+++++|++|...+++ .+. .+.+++++++||+||.+++
T Consensus       102 ~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtG  165 (253)
T d2gqfa1         102 LFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG  165 (253)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCC
T ss_pred             cccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCC
Confidence            3555566789999999999999999999999999875333 222 3445899999999887654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.54  E-value=4.7e-16  Score=139.11  Aligned_cols=59  Identities=25%  Similarity=0.398  Sum_probs=53.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      .||+|||||++||+||++|+++|+ +|+||||++.+||+++|...+                    ++.+|.|++++...
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~--------------------g~~~d~G~~~~~~~   60 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFA--------------------GINVELGANWVEGV   60 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEET--------------------TEEEESSCCEEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccC--------------------CEEEecCCeEEecc
Confidence            389999999999999999999996 799999999999999998653                    79999999988643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.5e-15  Score=138.31  Aligned_cols=74  Identities=19%  Similarity=0.318  Sum_probs=62.7

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~   82 (419)
                      ++.+|||||||++||+||+.|+++|++|+|||+++++|||++|++.+                    ++.+|+|++++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~--------------------g~~~d~G~~~i~~   63 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKG--------------------NYVADLGAMVVTG   63 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEET--------------------TEEEESSCCEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeC--------------------CEEEECCCEEECC
Confidence            45789999999999999999999999999999999999999998753                    7999999999964


Q ss_pred             Cc--hhhHHHHhcCCc
Q 014768           83 NG--ALVRVLIHTDVT   96 (419)
Q Consensus        83 ~~--~~~~~l~~~~~~   96 (419)
                      ..  .+.+++.+.++.
T Consensus        64 ~~~~~~~~l~~~lgl~   79 (449)
T d2dw4a2          64 LGGNPMAVVSKQVNME   79 (449)
T ss_dssp             SBTCHHHHHHHHHTCC
T ss_pred             CCCcHHHHHHHHcCCc
Confidence            42  355555556654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.50  E-value=1.6e-14  Score=130.87  Aligned_cols=97  Identities=15%  Similarity=0.219  Sum_probs=71.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~   83 (419)
                      ..+|+|||||++||+||+.|+++|++|+|+||++.+||++.++...+                 ..++.+|.|||++...
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~-----------------~g~~~~~~Gphif~t~   64 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE-----------------TNVMVHVYGPHIFHTD   64 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT-----------------TCCEEETTSCCCEEES
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecC-----------------CCceEEecCceeecCc
Confidence            45899999999999999999999999999999999999998874210                 1267889999999876


Q ss_pred             chhhHHHHhcCCcceeeEEEecc-eeEEeCCeEEEecCC
Q 014768           84 GALVRVLIHTDVTKYLYFKAVDG-SFVYNKGKVHKVPAT  121 (419)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~  121 (419)
                      .+.+..+...    ..++.+... ...+.+|+.+..|.+
T Consensus        65 ~~~v~~~~~~----~~~~~~~~~~~~~~~~g~~~~~P~~   99 (314)
T d2bi7a1          65 NETVWNYVNK----HAEMMPYVNRVKATVNGQVFSLPIN   99 (314)
T ss_dssp             CHHHHHHHHT----TSCEEECCCCEEEEETTEEEEESCC
T ss_pred             cHHHHHHHHH----hhhhhhhccccceeecceeeccCcc
Confidence            5433333221    123333322 234568888888865

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.45  E-value=7.9e-13  Score=119.54  Aligned_cols=55  Identities=16%  Similarity=0.111  Sum_probs=45.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CC--eEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EG--ETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g--~~i~ad~VV~~~~  286 (419)
                      ..+.+.+.+.+++.|++|+++++|++|+.+++|+++||..   ++  ..|+|+.||.+++
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtG  204 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATG  204 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccC
Confidence            3588888999999999999999999999865689999986   23  2689999887654

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=3.4e-13  Score=93.50  Aligned_cols=94  Identities=52%  Similarity=0.884  Sum_probs=84.8

Q ss_pred             CeeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcc
Q 014768          296 GRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLG  375 (419)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~  375 (419)
                      +.+.|++++++||+++.++..+.++++|+.++.+.+.+|++..|.....||+|+++.+++|.+++++|+.+|+|+++.+.
T Consensus         4 G~ViRaICIl~hPIpnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~h~V~~kg~yiaiVST~vET~nPe~El~pgl~lLg   83 (97)
T d1d5ta2           4 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALGLLE   83 (97)
T ss_dssp             EEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHTTTC
T ss_pred             cEEEEEEEEecCCcCCCCCCccEEEEeehHHhccCCCEEEEEeccccccCCCCeEEEEEEEEEecCCcHHHHHHHHHhhc
Confidence            56889999999999998888899999999999999999999999888999999999999999999999999999999888


Q ss_pred             cccceeeeeccccc
Q 014768          376 PVDEIFYDIYDRYE  389 (419)
Q Consensus       376 ~~~~~~~~~~~~~~  389 (419)
                      ++.+.|..+.+.+|
T Consensus        84 pI~e~F~~v~d~yE   97 (97)
T d1d5ta2          84 PIDQKFVAISDLYE   97 (97)
T ss_dssp             SCSEEEEEEEEEEE
T ss_pred             cHHheeechhhccC
Confidence            88888776666543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=5e-14  Score=126.73  Aligned_cols=93  Identities=18%  Similarity=0.306  Sum_probs=68.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEE-ccCcceeecC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKFIIAN   83 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~-d~gp~~~~~~   83 (419)
                      +||||||||++||+||.+|+++|++|+|+|+++.+||+|.+....                    ++.+ |.|||++...
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~--------------------g~~~~~~G~h~f~t~   61 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCE--------------------GIQIHKYGAHIFHTN   61 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEET--------------------TEEEETTSCCCEEES
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcC--------------------CEEEeecCcEEEEec
Confidence            799999999999999999999999999999999999999987532                    6665 8899999877


Q ss_pred             chhhHHHHhcCCcceeeEEEec-ceeEEeCCeEEEecCC
Q 014768           84 GALVRVLIHTDVTKYLYFKAVD-GSFVYNKGKVHKVPAT  121 (419)
Q Consensus        84 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~  121 (419)
                      .+.+..+...-    .++.... ......+|+.+.+|..
T Consensus        62 ~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~P~~   96 (298)
T d1i8ta1          62 DKYIWDYVNDL----VEFNRFTNSPLAIYKDKLFNLPFN   96 (298)
T ss_dssp             CHHHHHHHHTT----SCBCCCCCCCEEEETTEEEESSBS
T ss_pred             chHHHHHhhcc----ccceeeccccceeeeceeEEeccc
Confidence            65444443321    1111111 1223457888888754

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=6.2e-13  Score=92.19  Aligned_cols=93  Identities=51%  Similarity=0.899  Sum_probs=84.1

Q ss_pred             eeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhccc
Q 014768          297 RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGP  376 (419)
Q Consensus       297 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~  376 (419)
                      ++.|+++++.||+++.++..+.++++|+.++.+.+.+|++..|.....||+|+++.+++|.+++++|+.+|+|+++.+.+
T Consensus         6 kViRaICIl~hPipnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~h~V~~kg~yiAiVST~vET~nPe~El~pgl~lLG~   85 (98)
T d2bcgg3           6 RVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGP   85 (98)
T ss_dssp             EEEEEEEEESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHGGGCS
T ss_pred             eEEEEEEEecCCcCCCCCCceEEEEEehHHhCCCcCEEEEEeccccccCCCCcEEEEEEEEeecCCcHHHHHHHHHhhcc
Confidence            48899999999999988889999999999999999999999998889999999999999999999999999999998888


Q ss_pred             ccceeeeeccccc
Q 014768          377 VDEIFYDIYDRYE  389 (419)
Q Consensus       377 ~~~~~~~~~~~~~  389 (419)
                      +.+.|..+-+.+|
T Consensus        86 I~e~F~~v~d~yE   98 (98)
T d2bcgg3          86 IEEKFMGIAELFE   98 (98)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             HHheEEcceeccC
Confidence            8888876665543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.41  E-value=2.3e-12  Score=117.18  Aligned_cols=55  Identities=24%  Similarity=0.221  Sum_probs=45.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g~--~i~ad~VV~~~~  286 (419)
                      ..+.+.|.+.+.+.|++|+++++|++|+.+++|+|+||..   +++  +|.|+.||.+++
T Consensus       152 ~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtG  211 (322)
T d1d4ca2         152 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG  211 (322)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCC
Confidence            4688999999999999999999999999866789999876   232  589999987654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.35  E-value=2.9e-12  Score=116.25  Aligned_cols=61  Identities=21%  Similarity=0.215  Sum_probs=48.6

Q ss_pred             EecCCc---CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCe--EEEcCEEEeCCC
Q 014768          226 YPLYGL---GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       226 ~p~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g~--~i~ad~VV~~~~  286 (419)
                      .+.+|.   ..+.++|.+.++++|++++++++|+++..+++++++||..   +++  ++.|+.||.+++
T Consensus       139 ~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtG  207 (317)
T d1qo8a2         139 RPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATG  207 (317)
T ss_dssp             ECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCC
T ss_pred             ccccccccchhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecc
Confidence            444442   3589999999999999999999999998766889999876   343  578999887664

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.24  E-value=1.3e-11  Score=114.32  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=32.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +++||||||||.+|+++|.+|+++|++|+|||+..
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46999999999999999999999999999999953

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.10  E-value=3.1e-10  Score=104.73  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .||||||||.+|+++|.+|+++|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            699999999999999999999999999999953

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=1.3e-11  Score=106.54  Aligned_cols=45  Identities=16%  Similarity=0.328  Sum_probs=42.7

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      |+++|||+|||||++|++||.+|++.|++|+|+|+++.+||.|..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~   46 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEE
Confidence            778999999999999999999999999999999999999998763

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.4e-10  Score=94.64  Aligned_cols=42  Identities=19%  Similarity=0.286  Sum_probs=39.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +..+|+|||||++||+||..|+++|++|+|+|+.+.+||...
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            347899999999999999999999999999999999999876

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.94  E-value=1.8e-10  Score=101.99  Aligned_cols=43  Identities=23%  Similarity=0.254  Sum_probs=39.6

Q ss_pred             CcceEEEECCCchHHHHhhcccc-CCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .++||+|||||++||+||++|++ .|++|+|+||++.+||.++.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            36899999999999999999987 59999999999999998874

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.91  E-value=3.1e-10  Score=99.27  Aligned_cols=44  Identities=25%  Similarity=0.262  Sum_probs=37.7

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      |.++.||||||||++||++|++|+++|++|+|+||+...+|.+.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~s~   46 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQ   46 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCcch
Confidence            44567999999999999999999999999999999875555443

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.91  E-value=2.1e-10  Score=97.92  Aligned_cols=44  Identities=20%  Similarity=0.375  Sum_probs=41.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~   46 (419)
                      ++|||||||||++||+||.++++.|.+|+|+|+++.+||.|...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~   45 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV   45 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence            57999999999999999999999999999999999999988643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.90  E-value=2.3e-10  Score=105.73  Aligned_cols=42  Identities=24%  Similarity=0.347  Sum_probs=38.7

Q ss_pred             cceEEEECCCchHHHHhhcccc------CCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSV------DGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~------~G~~V~vlE~~~~~GG~~~t   45 (419)
                      +|||||||||++||+||+.||+      +|++|+||||+..+|....+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~   79 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS   79 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccc
Confidence            5999999999999999999997      89999999999999877653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.90  E-value=1.4e-10  Score=99.66  Aligned_cols=43  Identities=35%  Similarity=0.458  Sum_probs=40.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      .+|||||||||++||+||.+|++.|++|+|+|+++.+||.+..
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~   47 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence            4699999999999999999999999999999999999997653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.88  E-value=3.9e-10  Score=104.23  Aligned_cols=43  Identities=33%  Similarity=0.520  Sum_probs=39.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      |+.+|||||||||++|+++|.+|+++|++|+|||+....++..
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~   43 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   43 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Confidence            8999999999999999999999999999999999976655443

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.88  E-value=1.2e-09  Score=99.81  Aligned_cols=36  Identities=33%  Similarity=0.588  Sum_probs=32.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      ..||+||||||.+|+++|.+||++ ++|+|||+.+..
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            459999999999999999999987 999999997643

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=5.6e-09  Score=93.72  Aligned_cols=41  Identities=10%  Similarity=0.058  Sum_probs=36.4

Q ss_pred             cceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+|||+|++||+||..++++  |.+|+|+||....||.+.
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~   47 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTV   47 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHH
Confidence            58999999999999999999976  679999999988877643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=4.9e-10  Score=95.25  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=37.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++|||||||||.+|++||.+|++.|++|+|+|++ .+||.|.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            5799999999999999999999999999999995 5888774

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.80  E-value=8.3e-10  Score=94.42  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=38.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++|||||||||++||+||.+|++.|++|+|+|+....|+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~   43 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA   43 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcccc
Confidence            689999999999999999999999999999999888776654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.80  E-value=1.1e-09  Score=97.43  Aligned_cols=43  Identities=28%  Similarity=0.264  Sum_probs=40.1

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+++||||||||++||++|..|.++|.+|+||||++.+||.+.
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~   47 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   47 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccc
Confidence            3568999999999999999999999999999999999999764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=6.9e-10  Score=95.69  Aligned_cols=41  Identities=15%  Similarity=0.143  Sum_probs=37.9

Q ss_pred             cceEEEECCCchHHHHhhccccCC-------CeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G-------~~V~vlE~~~~~GG~~~   44 (419)
                      .++|+|||||++||+||++|+++|       ++|+|+||++.+||.++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            469999999999999999999988       58999999999999775

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.73  E-value=1.7e-09  Score=98.30  Aligned_cols=54  Identities=17%  Similarity=0.149  Sum_probs=44.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ..+..+|.+.+++.|++|+.+++|.++.. +++++.++..    +|+  ++.|+.||.+++
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATG  217 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATG  217 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEecc
Confidence            46888999999999999999999999999 4898887754    454  578999887653

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=3.5e-09  Score=91.03  Aligned_cols=40  Identities=18%  Similarity=0.143  Sum_probs=36.3

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      +|||||||||++|++||.++++.|++|+|+|+++..|...
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~   42 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGT   42 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCccc
Confidence            6999999999999999999999999999999987765443

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=4.3e-09  Score=94.25  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +++||||||+|++||+||..+++.| +|+||||.+..||.+.
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~   46 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTF   46 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC----
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchH
Confidence            4699999999999999999999988 9999999998887653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.66  E-value=6.7e-09  Score=94.29  Aligned_cols=46  Identities=15%  Similarity=0.201  Sum_probs=40.7

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCccccc
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSL   46 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~t~   46 (419)
                      |....+|+|||||++||+||..|+++|  ++|+|+||++.+||.+...
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~   48 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYT   48 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCccccc
Confidence            666678999999999999999998877  6999999999999987643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.66  E-value=3.3e-09  Score=90.83  Aligned_cols=40  Identities=15%  Similarity=0.027  Sum_probs=36.6

Q ss_pred             ceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~   44 (419)
                      .+|+|||||++||+||.+|+++  |++|+|||+.+.+||.++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~   43 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   43 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceeh
Confidence            4899999999999999999775  789999999999999765

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.66  E-value=6.6e-09  Score=90.76  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=35.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      ...+|+|||||++||+||..|+++|++|+||||++.++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~   41 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS   41 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            356899999999999999999999999999999887653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.65  E-value=6.3e-09  Score=89.27  Aligned_cols=43  Identities=21%  Similarity=0.338  Sum_probs=40.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ...+|+|||||++||+||..|+++|++|+|+|+++.+||.+..
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            3479999999999999999999999999999999999998764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=5.6e-09  Score=86.00  Aligned_cols=39  Identities=23%  Similarity=0.466  Sum_probs=35.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .|||+|||||.+|++||.++++.|.+|+|+|++  +||++.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            389999999999999999999999999999985  688775

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.63  E-value=6.4e-09  Score=86.53  Aligned_cols=43  Identities=23%  Similarity=0.415  Sum_probs=38.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCCCccccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSL   46 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~t~   46 (419)
                      ..+|+|||||++||+||..|+++|+ +|+|+||++.+||..+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            3589999999999999999999998 599999999999976543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=6e-09  Score=93.57  Aligned_cols=42  Identities=26%  Similarity=0.271  Sum_probs=38.9

Q ss_pred             cceEEEECCCchHHHHhhcccc--CCCeEEEeccCCCCCCcccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ++||+|||||++||+||+.|++  .|++|+|+|+++.+||.++.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            5899999999999999999995  59999999999999998864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4.7e-09  Score=89.27  Aligned_cols=41  Identities=20%  Similarity=0.299  Sum_probs=36.3

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      .+||+||||||++|++||.++++.|++|+|+|+. .+||.|-
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-~~GG~c~   42 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCV   42 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CCCCccc
Confidence            3699999999999999999999999999999994 5666553

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.60  E-value=8.4e-09  Score=90.11  Aligned_cols=42  Identities=33%  Similarity=0.494  Sum_probs=40.1

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||+||||||.+|+.||..|++.|.+|+|+|+++.+||.|-
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            579999999999999999999999999999999999999874

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.58  E-value=7.1e-09  Score=90.49  Aligned_cols=39  Identities=26%  Similarity=0.402  Sum_probs=36.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ||+||||||.+|++||.++++.|.+|+|+|++ .+||.|-
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            89999999999999999999999999999995 5898875

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=6e-09  Score=94.42  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=38.5

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +++||||||+|++||+||..++++|.+|+|+||.+..||.+.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s~   47 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTV   47 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcHH
Confidence            469999999999999999999999999999999998887543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.55  E-value=1e-08  Score=93.64  Aligned_cols=39  Identities=26%  Similarity=0.352  Sum_probs=34.8

Q ss_pred             CCcceEEEECCCchHHHHhhccc-----cCCCeEEEeccCCCCC
Q 014768            2 DEEYDVIVLGTGLKECILSGLLS-----VDGLKVLHMDRNDYYG   40 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La-----~~G~~V~vlE~~~~~G   40 (419)
                      +..|||+|||||++||++|..|+     ++|++|+||||++.+.
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            34699999999999999999996     6899999999987664

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.55  E-value=7.3e-09  Score=87.99  Aligned_cols=40  Identities=13%  Similarity=0.246  Sum_probs=36.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++|+||||||++|++||..+++.|.+|+|+|++ .+||.|-
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~   44 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCL   44 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            689999999999999999999999999999996 5788764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=1.2e-08  Score=84.52  Aligned_cols=43  Identities=12%  Similarity=0.183  Sum_probs=37.4

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t   45 (419)
                      ++.||+|||||++||+||.+|++.|.+|+|+|+++..|....+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~   46 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTT   46 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccccccc
Confidence            4689999999999999999999999999999998775545443

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.54  E-value=1.8e-08  Score=88.68  Aligned_cols=40  Identities=18%  Similarity=0.246  Sum_probs=35.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~   44 (419)
                      +||+|||||++||++|..|+++|. +|+|+||++.++....
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~   42 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGV   42 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCce
Confidence            699999999999999999999995 9999999988764433

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=1.7e-08  Score=84.76  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=34.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC-CCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~-~~GG~   42 (419)
                      .|||||||||++|+.||.++|+.|.+|+++|++- .+|+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~   41 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP   41 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccc
Confidence            5999999999999999999999999999999984 44433

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.52  E-value=9.3e-09  Score=87.40  Aligned_cols=40  Identities=23%  Similarity=0.328  Sum_probs=36.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~   44 (419)
                      +|||||||||++|++||.++++.|.+|+|+|+.. +||.|.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~   42 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCL   42 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCccee
Confidence            6899999999999999999999999999999965 577654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.51  E-value=2.2e-08  Score=91.45  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             cceEEEECCCchHHHHhhcccc----CCCeEEEeccCCCCCCccc
Q 014768            4 EYDVIVLGTGLKECILSGLLSV----DGLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~----~G~~V~vlE~~~~~GG~~~   44 (419)
                      ++||||||||++||+||+.|++    +|.+|+||||.+..||.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            5899999999999999999974    7999999999988877653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.47  E-value=2.2e-08  Score=88.75  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=32.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++||+|||||++||++|..|+++|++|+|+||++.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46999999999999999999999999999999864

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=3.3e-07  Score=67.49  Aligned_cols=76  Identities=12%  Similarity=0.211  Sum_probs=61.5

Q ss_pred             CeeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHh
Q 014768          296 GRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGID  372 (419)
Q Consensus       296 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~  372 (419)
                      .++.|++++++|++++.....+..++.++...++.+.+|+.+.|.....||+|++++|+++.. .++++++|+++++
T Consensus         3 ~~V~RaI~I~d~si~~~~~~~~v~ii~~p~~~~~~~~v~vl~~ss~~~vCP~G~yv~~~St~~-t~~~~~~L~~a~~   78 (113)
T d1vg0a2           3 RQISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTCMS-SKTAREDLERVVQ   78 (113)
T ss_dssp             EEEEEEEEEESSCSSCCSCCCCCEEEEECCSSTTSCCEEEEEECGGGTSSCTTCEEEEEEEEC-SSCHHHHHHHHHH
T ss_pred             EEEEEEEEEECCCCCCCCCCccEEEeecCcccCCCCCEEEEEecCCcccCCCCCEEEEEEEcC-CCCHHHHHHHHHH
Confidence            357899999999997665445566666666667788999999998888999999999999864 5588888888775

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.43  E-value=2.6e-08  Score=85.73  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=34.5

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCC
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYG   40 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~G   40 (419)
                      .++|||||||||++|++||.++++.|. +|+|+|+....|
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            368999999999999999999999985 699999987643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.41  E-value=4.4e-08  Score=81.13  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=34.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      ++||+|||||.+||+||.+|+|+|.+|+|+|+.....
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~   41 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAND   41 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTT
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccc
Confidence            5899999999999999999999999999999877643

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.40  E-value=5.4e-08  Score=89.00  Aligned_cols=35  Identities=37%  Similarity=0.552  Sum_probs=32.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..||+||||||.+|+++|.+|+++|++|+|||+..
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            36999999999999999999999999999999963

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.38  E-value=5.6e-08  Score=83.26  Aligned_cols=35  Identities=17%  Similarity=0.131  Sum_probs=31.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      +.||+||||||++|++||.++++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            57999999999999999999999885 799999854

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.29  E-value=1.6e-07  Score=86.71  Aligned_cols=36  Identities=25%  Similarity=0.430  Sum_probs=32.6

Q ss_pred             CcceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~   38 (419)
                      ++||+||||||.+|++.|.+|+++| ++|+|||+.+.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            3599999999999999999999987 89999999654

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.28  E-value=1.5e-07  Score=86.88  Aligned_cols=36  Identities=31%  Similarity=0.558  Sum_probs=33.3

Q ss_pred             CcceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~   38 (419)
                      ++||+||||||.+|++.|.+|+++| ++|+|||+.+.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4699999999999999999999998 79999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.10  E-value=6.9e-08  Score=82.93  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=31.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      +|+|||||++||++|+.|+++|++|+++|+...++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~   36 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA   36 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecc
Confidence            69999999999999999999999988888865543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.99  E-value=2.1e-06  Score=64.35  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=35.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      .+++|||||..|+-+|..|++.|.+|+++|+.+++...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc
Confidence            47999999999999999999999999999999998643

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=8.2e-07  Score=75.63  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=32.6

Q ss_pred             ceEEEECCCchHHHHhhccccC---CCeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVD---GLKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~---G~~V~vlE~~~~~GG~~~   44 (419)
                      .+|+|||||++|++||.++++.   |.+|+++|+ ..+||.|-
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceee
Confidence            4899999999999999987764   478999998 56788654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.96  E-value=3.3e-06  Score=63.57  Aligned_cols=40  Identities=13%  Similarity=0.231  Sum_probs=36.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      ..+++|||||+.|+-+|..|++.|++|+++|+++++-.+.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~   69 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA   69 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc
Confidence            4589999999999999999999999999999999986544

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3.6e-06  Score=62.91  Aligned_cols=37  Identities=24%  Similarity=0.181  Sum_probs=34.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+.+..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~   58 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP   58 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh
Confidence            4699999999999999999999999999999998753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.90  E-value=4.6e-06  Score=63.92  Aligned_cols=39  Identities=13%  Similarity=0.149  Sum_probs=35.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ..+++|||||+.|+-+|..|++.|.+|+++|+++++..+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~   73 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER   73 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc
Confidence            358999999999999999999999999999999987543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.90  E-value=3.8e-06  Score=63.45  Aligned_cols=39  Identities=26%  Similarity=0.244  Sum_probs=35.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      .+|+|||||+.|+-+|..|++.|++|+++|+.+++-++.
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~   69 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY   69 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc
Confidence            479999999999999999999999999999998875443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.88  E-value=5.2e-06  Score=62.05  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=33.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+++-
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            479999999999999999999999999999998873

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.87  E-value=3.9e-06  Score=63.36  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=34.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||||..|+-+|..|++.|++|+++|+++.+.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC
Confidence            4799999999999999999999999999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.86  E-value=3.1e-06  Score=63.16  Aligned_cols=36  Identities=17%  Similarity=0.119  Sum_probs=34.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||||+.|+-+|..|++.|++|+++|+.+++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            479999999999999999999999999999999885

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=8.6e-06  Score=61.34  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=34.4

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||||..|+-+|..|++.|.+|+|+|+++++-.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~   60 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA   60 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch
Confidence            4799999999999999999999999999999998753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1e-05  Score=61.27  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||||..|+-+|..|++.|.+|+++|+++++-
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            479999999999999999999999999999998874

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.69  E-value=1.1e-05  Score=60.34  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=33.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      -+++|||||..|+-.|..|++.|.+|+++|+++++-
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            479999999999999999999999999999998863

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.59  E-value=1.1e-05  Score=60.90  Aligned_cols=36  Identities=14%  Similarity=0.149  Sum_probs=33.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||||..|+-.|..|++.|.+|+|+|+++++-
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            479999999999999999999999999999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.53  E-value=1.4e-05  Score=64.57  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=34.4

Q ss_pred             ceEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCccc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESS   44 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~   44 (419)
                      .+|||||||.+|+.+|..|.+.|  .+|+++|+++.+.+...
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~   44 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYL   44 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTT
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccc
Confidence            47999999999999999999988  58999999987655443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.4e-05  Score=55.66  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+|+|+|.|.+|+++|.+|++.|.+|++.|.+...-
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch
Confidence            479999999999999999999999999999977643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=3.1e-05  Score=58.13  Aligned_cols=35  Identities=26%  Similarity=0.257  Sum_probs=31.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      .+++|||||..|+-.|..|++.|.+|+|+++++..
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l   55 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL   55 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhh
Confidence            47999999999999999999999999999986544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.46  E-value=3.3e-05  Score=58.21  Aligned_cols=39  Identities=13%  Similarity=0.146  Sum_probs=35.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      -+++|||||..|+=.|..|++.|.+|+++|+.+.+-...
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~   65 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA   65 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc
Confidence            479999999999999999999999999999999886543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.42  E-value=4.8e-05  Score=57.00  Aligned_cols=36  Identities=14%  Similarity=0.239  Sum_probs=33.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||||..|+-.|..|++.|.+|+++|+.+.+.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            579999999999999999999999999999988764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.36  E-value=0.00025  Score=52.50  Aligned_cols=54  Identities=19%  Similarity=0.166  Sum_probs=43.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      ..+.+.+.+.++++|+++++|+.|++|..++++ +..+.+ +|+++.||.||.+++
T Consensus        62 ~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g-~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          62 SELRKQLTEQLRANGINVRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTS-CEEEEETTSCEEEESEEEECSC
T ss_pred             chhhHHHHHHHhhCcEEEEcCCEEEEEEECCCC-EEEEEECCCCEEEcCEEEEecC
Confidence            347788888899999999999999999874344 445666 999999999998753

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.35  E-value=5.6e-05  Score=60.82  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|+|||||..|..+|.+|+++|++|+|+||+..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            5799999999999999999999999999999765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.35  E-value=5.9e-05  Score=59.92  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      +|+|||||.+|+-+|..|++ +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            69999999999999999975 7799999997654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.28  E-value=5.4e-05  Score=61.19  Aligned_cols=40  Identities=20%  Similarity=0.074  Sum_probs=34.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      .-||||||||.+|+-+|..|++.|.+|+|++..+......
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~   42 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPH   42 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccch
Confidence            3589999999999999999999999999999887765443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.25  E-value=0.0005  Score=52.11  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=44.1

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEc-CCCcEEEEEe-CCeEEEcCEEEeCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFD-EEGKVVGVTS-EGETAKCKKVVCDP  285 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~-~~~~v~gV~~-~g~~i~ad~VV~~~  285 (419)
                      .+.+.+.+.++++|+++++|++|++|... +++++..|.+ +|+++.||.||.+.
T Consensus        78 ~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~  132 (133)
T d1q1ra2          78 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI  132 (133)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECC
T ss_pred             hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEee
Confidence            46667778889999999999999999864 2567777888 88999999999875

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.25  E-value=0.00038  Score=51.48  Aligned_cols=52  Identities=19%  Similarity=0.278  Sum_probs=43.2

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD  284 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~  284 (419)
                      ..+.+.+.+.++++|+++++|++|++|+..++++. .|++ +|+++.||.||.+
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeE-EEEECCCcEEEeCEEEEe
Confidence            45788888999999999999999999986445554 4666 8999999999875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.22  E-value=6.6e-05  Score=60.70  Aligned_cols=33  Identities=27%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .++.|||+|..|++.|..|+++|++|+++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999999999999999999999999964

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00043  Score=52.78  Aligned_cols=53  Identities=17%  Similarity=0.107  Sum_probs=44.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      ..+.+.+.+.++++|+++++|+.|++|..+ ++++ .|++ +|+++.||.||.+++
T Consensus        83 ~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~-~~~~-~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          83 EYLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHHHhCCcEEEeCCEEEEEEec-CCEE-EEEECCCCEEECCEEEEeec
Confidence            347777888899999999999999999974 6665 4666 899999999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.19  E-value=0.00013  Score=54.19  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             ceEEEECCCchHHHHhhcc---ccCCCeEEEeccCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLL---SVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~L---a~~G~~V~vlE~~~~~G   40 (419)
                      .+++|||||..|+-+|..|   .++|.+|+++|+.+.+-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            4799999999999999655   45677999999988874

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00052  Score=50.65  Aligned_cols=53  Identities=9%  Similarity=0.137  Sum_probs=43.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~  285 (419)
                      ..+.+.+.+.++++|+++++++.|++|..++++.+ .|++ +|+++.+|.||.+.
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~D~vi~a~  115 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAI  115 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEE-EEEECCCCEEEcCEEEEec
Confidence            35788888999999999999999999987434444 4666 89999999999865

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.16  E-value=8.1e-05  Score=61.00  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             eEEEECCCchHHHHhhccccC--CCeEEEeccCCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYY   39 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~   39 (419)
                      +|+|||||.+|+.+|..|++.  +.+|+++|+++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            799999999999999999886  4689999998765

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00013  Score=60.46  Aligned_cols=38  Identities=11%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCC--eEEEeccCCCC
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYY   39 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~~~   39 (419)
                      .+++++||||||++|+.+|..|.+.|+  +|+++++.+.+
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            357899999999999999999988775  69999987665

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00019  Score=56.83  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=31.4

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|+|||+|-.|...|..|+++|++|+++.|++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            799999999999999999999999999999765

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.96  E-value=0.0007  Score=50.48  Aligned_cols=51  Identities=16%  Similarity=0.134  Sum_probs=43.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD  284 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~  284 (419)
                      ..+.+.+.+.++++|+++++++.|++|.-  ++++..|.++|+++.||.||++
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~--~~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC--SSBCCEEEESSCEEECSEEEEC
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEc--CCCEEEEEeCCCEEECCEEEEE
Confidence            35777788888999999999999999974  5666677779999999999875

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.95  E-value=0.00019  Score=53.18  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=31.6

Q ss_pred             ceEEEECCCchHHHHhhcc---ccCCCeEEEeccCCCCCC
Q 014768            5 YDVIVLGTGLKECILSGLL---SVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~L---a~~G~~V~vlE~~~~~GG   41 (419)
                      .+++|||||..|+-+|..|   ++.|.+|+++|+.+.+.-
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            4799999999999999764   456999999999988753

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.91  E-value=0.00011  Score=59.36  Aligned_cols=35  Identities=29%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~   39 (419)
                      -+|+|||||.+|+.+|..|++.|.+|+|++..+..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~   38 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   38 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEeccc
Confidence            46999999999999999999999998888876654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00019  Score=58.32  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||||..|...|..++++|++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4899999999999999999999999999999764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.86  E-value=0.0013  Score=48.70  Aligned_cols=54  Identities=15%  Similarity=0.068  Sum_probs=43.6

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCeEEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGETAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~~i~ad~VV~~~  285 (419)
                      ..+.+.+.+.+++.|+++++++.|++|+.++++++..+..    +++++.||.||++.
T Consensus        63 ~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~  120 (121)
T d1mo9a2          63 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGL  120 (121)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECC
T ss_pred             cchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEE
Confidence            3577888888899999999999999999865666655543    45789999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.84  E-value=0.00039  Score=54.34  Aligned_cols=41  Identities=20%  Similarity=0.119  Sum_probs=34.8

Q ss_pred             eEEEE--CCCchHHHHhhccccCCCeEEEeccCCCCCCccccc
Q 014768            6 DVIVL--GTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (419)
Q Consensus         6 dvvII--GaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~   46 (419)
                      .|+|+  |||..|+.+|..|++.|++|+++|+.+.++-.....
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~   83 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTL   83 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchh
Confidence            45665  999999999999999999999999999886554443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.84  E-value=0.00031  Score=57.63  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=30.4

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||.|..||..|..||++|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            69999999999999999999999999999874

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00036  Score=53.25  Aligned_cols=39  Identities=18%  Similarity=0.220  Sum_probs=33.7

Q ss_pred             ceEEEECCCchHHHHhhcccc----CCCeEEEeccCCCCCCcc
Q 014768            5 YDVIVLGTGLKECILSGLLSV----DGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~----~G~~V~vlE~~~~~GG~~   43 (419)
                      .+++|||||..|+-+|..|++    .|.+|+++|+++.+.++.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc
Confidence            479999999999999998863    589999999999987654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.76  E-value=0.0003  Score=53.31  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|+|+|+|-.|...|..|.++|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            799999999999999999999999999999754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.76  E-value=0.0002  Score=57.84  Aligned_cols=34  Identities=24%  Similarity=0.256  Sum_probs=31.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|.|||||..|...|..++++|++|+++|.++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999999753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.0015  Score=48.43  Aligned_cols=53  Identities=15%  Similarity=0.269  Sum_probs=41.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC-----eEEEcCEEEeC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVCD  284 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g-----~~i~ad~VV~~  284 (419)
                      ..+.+.+.+.++++|++|++|++|+++..++++....++. ++     ++++||.|+++
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            4688888999999999999999999998754555555554 32     47999998864

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.65  E-value=0.0021  Score=47.25  Aligned_cols=51  Identities=16%  Similarity=0.109  Sum_probs=39.7

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEE-EeCC--eEEEcCEEEeC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEG--ETAKCKKVVCD  284 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV-~~~g--~~i~ad~VV~~  284 (419)
                      .+.+.+.+.++++|+++++|+.|++|+.. ++.+... ..+|  +++.||.||++
T Consensus        64 ~~~~~l~~~l~~~GI~i~~~~~v~~i~~~-~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          64 QMAAIIKKRLKKKGVEVVTNALAKGAEER-EDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             hhHHHHHHHHHhcCCEEEcCCEEEEEEEc-CCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            58888889999999999999999999874 4444322 2355  56999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.64  E-value=0.0036  Score=46.11  Aligned_cols=52  Identities=12%  Similarity=0.168  Sum_probs=41.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C---CeEEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---GETAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~---g~~i~ad~VV~~~  285 (419)
                      ..+.+.+.+.++++|++++++++|++|+.+ +++++ |+. +   ++++.||.||.+.
T Consensus        63 ~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~-v~~~~~~~~~~~~~D~vlvAv  118 (119)
T d3lada2          63 EQVAKEAQKILTKQGLKILLGARVTGTEVK-NKQVT-VKFVDAEGEKSQAFDKLIVAV  118 (119)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCEE-EEEESSSEEEEEEESEEEECS
T ss_pred             chhHHHHHHHHHhcCceeecCcEEEEEEEe-CCEEE-EEEEECCCCEEEECCEEEEee
Confidence            468888899999999999999999999984 66543 333 2   2579999998775

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.59  E-value=0.0017  Score=48.32  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=41.7

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CC--eEEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG--ETAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g--~~i~ad~VV~~~  285 (419)
                      ..+.+.+.+.+++.|++|++|+.|++|+.++++..+.++.  +|  +++.||.|+++|
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            4688888999999999999999999999743443344554  33  468999998764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.56  E-value=0.0039  Score=45.69  Aligned_cols=52  Identities=4%  Similarity=-0.006  Sum_probs=41.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEE-cCEEEeC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAK-CKKVVCD  284 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~-ad~VV~~  284 (419)
                      ..+.+.+.+.++++|+++++++.|++|+..+++++ .|++ +|+++. +|.||.+
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE-EEEETTSCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE-EEEECCCCEEEeCCEEEEe
Confidence            45788888899999999999999999987445544 5555 888875 6999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.51  E-value=0.00059  Score=55.12  Aligned_cols=36  Identities=22%  Similarity=0.148  Sum_probs=32.1

Q ss_pred             CCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +...+|+|||||--|.+.|..|+++|++|+++.+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            344579999999999999999999999999998864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.37  E-value=0.0011  Score=51.60  Aligned_cols=34  Identities=24%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|+|||+|.+|+.|+..+.+-|.+|+++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            4689999999999999999999999999999853

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.32  E-value=0.0011  Score=52.22  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=32.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .-+|+|||+|.+|+.||....+-|.+|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            35899999999999999999999999999999754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.24  E-value=0.0043  Score=45.77  Aligned_cols=48  Identities=21%  Similarity=0.221  Sum_probs=38.9

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~  285 (419)
                      ..+.+.+.+.++++|++++++++|+++.   ++.   |.+ ||+++.||.||.+.
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~---~~~---v~l~dg~~i~~D~vi~a~  120 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSV---DGV---VLLDDGTRIAADMVVVGI  120 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEE---TTE---EEETTSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEe---CCE---EEECCCCEEECCEEEEee
Confidence            4577777888899999999999999875   332   445 89999999999875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.21  E-value=0.0011  Score=50.81  Aligned_cols=37  Identities=16%  Similarity=0.244  Sum_probs=33.7

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCC--CeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~   37 (419)
                      |.++.+|.|||+|-.|.++|+.|+.+|  .++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            677889999999999999999999988  4899999865

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.14  E-value=0.0015  Score=51.39  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=30.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||.|..|.+.|..|+++|++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            69999999999999999999999999999964

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.14  E-value=0.00088  Score=50.72  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++||||.|-.|...|..|.+.|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            589999999999999999999999999999754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.12  E-value=0.0015  Score=50.62  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=33.0

Q ss_pred             CCCcceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      |.++.+|.|||+|-.|.++|+.|+..|. +++++|.++
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            5567899999999999999999998885 899999876

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.92  E-value=0.006  Score=45.26  Aligned_cols=54  Identities=17%  Similarity=0.201  Sum_probs=41.4

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEE-EEEe-CC--eEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVV-GVTS-EG--ETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~-gV~~-~g--~~i~ad~VV~~~~  286 (419)
                      ..+.+.+.+.++++|++++++++|++++.+ ++.+. .++. +|  ++++||.|+.+++
T Consensus        67 ~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~-~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPK-EDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEE-TTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             hhHHHHHHHHHHHcCcccccCcEEEEEEEc-CCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            368888999999999999999999999974 44433 2232 33  4799999998763

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.87  E-value=0.0024  Score=49.32  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=30.7

Q ss_pred             ceEEEEC-CCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|.||| .|..|.+.|..|.++|++|++++++.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            4799999 79999999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.83  E-value=0.0063  Score=44.90  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=39.8

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~  286 (419)
                      ..+.+.+.+.++++|+++++|++|+++..  +    ++.++++.+.||.||.+++
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~----~v~~~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTNSGFIEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEETTEEEECSCEEEECC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC--C----EEEeCCCEEECCEEEEEEE
Confidence            35777788888999999999999998753  2    3556899999999988764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.74  E-value=0.0052  Score=44.85  Aligned_cols=51  Identities=16%  Similarity=0.114  Sum_probs=38.3

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCeEEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~~i~ad~VV~~~  285 (419)
                      ..+.+.+.+.++++|++++++++|+++.   ++.......  +++++.||.||.++
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~---~~~~~~~~~~~~~~~i~~D~vi~A~  114 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVAV  114 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE---TTEEEEECSSSCCCEECCSCEEECC
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc---CCeEEEEEcCCCeEEEEcCEEEEec
Confidence            3578888899999999999999999885   333323223  34579999998775

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.65  E-value=0.0033  Score=48.53  Aligned_cols=35  Identities=26%  Similarity=0.211  Sum_probs=30.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~   39 (419)
                      -+|||||||-+|+=||..|.+.|. +|+++++.+..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            379999999999999999999985 69999987654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.58  E-value=0.0027  Score=50.66  Aligned_cols=30  Identities=30%  Similarity=0.226  Sum_probs=28.5

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEecc
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~   35 (419)
                      +|.|||+|--|.+.|..|+++|++|++.-+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            799999999999999999999999999855

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.57  E-value=0.0038  Score=50.50  Aligned_cols=32  Identities=28%  Similarity=0.175  Sum_probs=29.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||.|..||.+|..|| +|++|+.+|-++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            6999999999999999887 5999999998754

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.35  E-value=0.005  Score=48.08  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=29.7

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      +|.|||.|..|...|.+|+++|++|.+++++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            5999999999999999999999999999986

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.34  E-value=0.004  Score=50.17  Aligned_cols=32  Identities=28%  Similarity=0.249  Sum_probs=29.5

Q ss_pred             eEEEE-CCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVL-GTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvII-GaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|+|| |+|--|.+.|..|+++|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999 679999999999999999999999864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.11  E-value=0.0067  Score=47.24  Aligned_cols=32  Identities=28%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|.|||-|..|...|..|+++|++|.++++++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            69999999999999999999999999999853

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.92  E-value=0.0057  Score=47.02  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=29.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEecc
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~   35 (419)
                      ...|+|||||-.|+.-|..|.++|.+|+|+..
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            46899999999999999999999999999943

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.038  Score=40.64  Aligned_cols=54  Identities=13%  Similarity=-0.003  Sum_probs=39.1

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCc-EEEEEe-CC------eEEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK-VVGVTS-EG------ETAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~-v~gV~~-~g------~~i~ad~VV~~~  285 (419)
                      ..+.+.+.+.++++|+++++|++|++|..++++. +..+.. .|      ..+.||.||.+.
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~  124 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI  124 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEe
Confidence            4588888899999999999999999998743332 222222 33      257899988765

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.57  E-value=0.01  Score=46.83  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=31.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|-|||-|..|...|..|.++|++|.++++++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999999865

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.56  E-value=0.012  Score=42.62  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ...|+|||+|-.|..-|..|.+.|.+|+|+...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            468999999999999999999999999999753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.47  E-value=0.011  Score=46.81  Aligned_cols=33  Identities=30%  Similarity=0.367  Sum_probs=30.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ++|-|||-|..|...|..|.++|++|.++++++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999853

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.27  E-value=0.01  Score=45.39  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      ..+|.|||+|-.|.++|+.|+..|.  ++.++|.++
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            4689999999999999999999885  799999764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.27  E-value=0.012  Score=42.19  Aligned_cols=33  Identities=15%  Similarity=0.010  Sum_probs=29.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .+|+|||+|.+|+=.|..|++.+.+|+++-+.+
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            579999999999999999999998887776643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.18  E-value=0.011  Score=46.28  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=30.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      -.|+|+|+|..|+.++..+...|.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            469999999999999999999999999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.87  E-value=0.02  Score=44.16  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=30.9

Q ss_pred             cceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +.+|.|||+|-.|.++|+.|+..|.  ++.++|.++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4699999999999999999999996  899999863

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.78  E-value=0.062  Score=46.13  Aligned_cols=56  Identities=13%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             cHHHHHHHHHHHcCc--EEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGG--TYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~--~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~  288 (419)
                      .+.+-|.+.+++++.  .|++|++|+++..+++...+.|++ ++++++||.||++.+++
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            344445566666676  599999999999755555667877 88999999999888765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.73  E-value=0.025  Score=43.56  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      ..+|.|||+|-.|.++|+.|...|.  ++.++|.++
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4689999999999999999999985  899999864

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.035  Score=40.90  Aligned_cols=37  Identities=24%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      ..+|+|||+|-+.+-.|..|++-+.+|+++-|.+..-
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            4589999999999999999999999999999988653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.02  Score=44.86  Aligned_cols=34  Identities=21%  Similarity=0.177  Sum_probs=30.1

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~   38 (419)
                      -.|+|+|+|..|+.++..+...|. +|++.|+++.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            469999999999999999999998 7999998643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.63  E-value=0.021  Score=43.70  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=30.3

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|.|||.|..|...|..|+++|++|++.++.+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            699999999999999999999999999987544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.022  Score=43.69  Aligned_cols=33  Identities=18%  Similarity=0.070  Sum_probs=30.8

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++||+|.|-.|...+..|.+.|.+|+|+|.++.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            699999999999999999999999999998653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.40  E-value=0.021  Score=43.19  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .+|.|||+|-.|.++|+.|+..+. ++.++|.++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            379999999999999999998885 999999765

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.032  Score=41.14  Aligned_cols=37  Identities=16%  Similarity=-0.063  Sum_probs=33.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      ..+|+|||+|-+.+-.|..|++-..+|+++-+.+..-
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~   66 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK   66 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc
Confidence            4589999999999999999999999999999987763

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.21  E-value=0.047  Score=40.41  Aligned_cols=38  Identities=24%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG   41 (419)
                      ..+|+|||+|-+.+-.|.+|++--.+|+++-|.+.+.+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            46899999999999999999999999999999988754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.15  E-value=0.03  Score=42.32  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      .+|.|||+|-.|.++|+.|+.+|.  ++.++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            479999999999999999999985  899999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.14  E-value=0.027  Score=43.80  Aligned_cols=34  Identities=24%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      .-.|+|+|+|..|+.++..+...|.+|+++++++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            3469999999999999998888999999998864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.025  Score=43.74  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=23.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCe
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLK   29 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~   29 (419)
                      .+|+|||||..|+-+|..|++.|.+
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCc
Confidence            4799999999999999999999965

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.08  E-value=0.029  Score=42.33  Aligned_cols=34  Identities=12%  Similarity=0.182  Sum_probs=29.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCC--eEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~~   38 (419)
                      .+|.|||+|-.|.++|+.|..+|.  ++.++|.++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            379999999999999999999885  8999997663

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=93.03  E-value=0.088  Score=45.72  Aligned_cols=43  Identities=21%  Similarity=0.193  Sum_probs=38.3

Q ss_pred             CCC-cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (419)
Q Consensus         1 m~~-~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~   43 (419)
                      |.. .|||||||||++||+||+.|+++|.+|+||||++..||.+
T Consensus         1 m~~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S   44 (336)
T d2bs2a2           1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (336)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             CCceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCch
Confidence            543 4799999999999999999999999999999998877654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.99  E-value=0.038  Score=41.78  Aligned_cols=32  Identities=34%  Similarity=0.273  Sum_probs=28.5

Q ss_pred             eEEEECC-CchHHHHhhccccCCC--eEEEeccCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +|.|||| |..|.++|+.|+..|.  ++.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999999985  799999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.91  E-value=0.026  Score=44.03  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=30.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      -.|+|+|+|..|+.++..+...|.+|++++.++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            4699999999999999888888999999999764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.035  Score=43.36  Aligned_cols=34  Identities=15%  Similarity=0.040  Sum_probs=30.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|+|+|+|=++-++++.|++.|.+|+|+-|+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            3589999999999999999999999999998753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.87  E-value=0.035  Score=41.91  Aligned_cols=33  Identities=15%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             eEEEECCCchHHHHhhccccCC--CeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~   38 (419)
                      +|.|||+|-.|.++|..|+..|  .++.++|.++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            7999999999999999999988  48999998763

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.86  E-value=0.035  Score=49.10  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=33.1

Q ss_pred             CCCcceEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |.+.++|+|.|| |.-|...+.+|.++|++|+++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            666789999996 9999999999999999999998743

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=92.86  E-value=0.026  Score=42.83  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=29.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      .+|.|||+|-.|.++|+.|...|.  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            479999999999999999998884  899999864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.85  E-value=0.032  Score=43.48  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             eEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +|.|||.|.-|.+.|..|.++|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            59999999999999999999996  788889864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.79  E-value=0.033  Score=42.19  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=28.8

Q ss_pred             eEEEECC-CchHHHHhhccccCC--CeEEEeccCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G--~~V~vlE~~~   37 (419)
                      +|.|||| |-.|.++|+.|+..|  .++.++|.++
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            7999996 999999999999999  4999999864

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.50  E-value=0.045  Score=41.77  Aligned_cols=32  Identities=9%  Similarity=0.081  Sum_probs=29.8

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ++.|||+|..|.+.|..|.++|++|+|.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            68999999999999999999999999999864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.44  E-value=0.047  Score=41.51  Aligned_cols=34  Identities=15%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             cceEEEECCCchHHHHhhccccCC-CeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~   37 (419)
                      ..+|.|||+|-.|.++|+.|.+.+ .++.++|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            458999999999999999998888 4899999865

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.31  E-value=0.033  Score=42.00  Aligned_cols=32  Identities=9%  Similarity=0.006  Sum_probs=28.7

Q ss_pred             eEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~   37 (419)
                      +|.|||+|-.|.++|+.|+.+|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            79999999999999999998884  799999764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.15  E-value=0.053  Score=37.70  Aligned_cols=37  Identities=19%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             CCCcceEEEECCCchHHHH-hhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaGi~Gl~a-A~~La~~G~~V~vlE~~~   37 (419)
                      |+...++-+||-|=+|+++ |..|.++|++|+.-|.+.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4455789999998889888 999999999999999864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.73  E-value=0.038  Score=43.64  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=30.0

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~   38 (419)
                      -.|+|+|+|..|+.+...+...|. +|+++|.++.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccc
Confidence            469999999999999999999997 8999998653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.70  E-value=0.11  Score=37.82  Aligned_cols=54  Identities=17%  Similarity=0.160  Sum_probs=38.0

Q ss_pred             CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCC--cEEEEEe----CCe--EEEcCEEEeCC
Q 014768          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG--KVVGVTS----EGE--TAKCKKVVCDP  285 (419)
Q Consensus       232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~--~v~gV~~----~g~--~i~ad~VV~~~  285 (419)
                      ..+++.+.+.+++.|++|++|+.|+++...+++  ....++.    +++  ...+|.|+.+.
T Consensus        60 ~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~Ai  121 (122)
T d1h6va2          60 QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAV  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEe
Confidence            358889999999999999999999999753222  1223333    222  45689998765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.56  E-value=0.063  Score=41.68  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             CcceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         3 ~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      +..+|+|+|+|=++-++++.|.+.|. +|+|+-|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            34679999999999999999999995 899998854

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.064  Score=41.08  Aligned_cols=34  Identities=18%  Similarity=0.040  Sum_probs=31.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|+|||-|.-|-.+|..|...|.+|+|.|..+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            3579999999999999999999999999999976

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=91.29  E-value=0.19  Score=40.93  Aligned_cols=40  Identities=28%  Similarity=0.319  Sum_probs=32.9

Q ss_pred             CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768          246 GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (419)
Q Consensus       246 G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~  287 (419)
                      +..++ ..+|.++.. +++++++|++ +|.++.|+.||.+++-
T Consensus        82 nL~i~-q~~V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          82 PLHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             TEEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             CHHHH-hccceeeEe-cccceeeEEeccccEEEEeEEEEccCc
Confidence            56665 566888988 5999999999 8999999999987753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.068  Score=42.91  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=30.1

Q ss_pred             cceEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|+|+|| |..|...+.+|.++|++|+++-|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            347999995 9999999999999999999998864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.86  E-value=0.068  Score=41.44  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=29.7

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      -.|+|+|+|..|+.++..+...|.+|++++.++.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            4699999999999999888889999999988543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.79  E-value=0.061  Score=40.38  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=28.7

Q ss_pred             eEEEECCCchHHHHhhccccCC--CeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~   37 (419)
                      +|.|||+|-.|.++|+.|+.+|  .++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            7999999999999999998887  4899999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.74  E-value=0.065  Score=41.42  Aligned_cols=33  Identities=24%  Similarity=0.229  Sum_probs=29.3

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      -.|+|+|+|..|+.++..+...|.+|++.+.++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            468999999999999999999999999998754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.68  E-value=0.068  Score=41.86  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=30.3

Q ss_pred             ceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~   38 (419)
                      -.|+|+|+|..|+.+...+...| .+|+++|.++.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            35999999999999999999999 58999998754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.57  E-value=0.065  Score=41.92  Aligned_cols=34  Identities=15%  Similarity=0.241  Sum_probs=29.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .-.|+|+|+|..|+.++..+...|. +|+++|.++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            3479999999999999999999996 799999864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.26  E-value=0.13  Score=36.92  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=30.8

Q ss_pred             cceEEEECCCc-----------hHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGL-----------KECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi-----------~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|+|||+|.           ++..|+..|.+.|++++++--|+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            45899999995           688889999999999999988876

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.17  E-value=0.093  Score=44.43  Aligned_cols=35  Identities=11%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             cceEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +.+|+|+|| |..|-..+..|.++|++|+++.|+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            468999998 99999999999999999999999754

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.12  E-value=0.11  Score=38.12  Aligned_cols=40  Identities=13%  Similarity=0.234  Sum_probs=29.7

Q ss_pred             CCcceEEEECCCchHHHHhhcccc-CCCe-EEEeccCCCCCC
Q 014768            2 DEEYDVIVLGTGLKECILSGLLSV-DGLK-VLHMDRNDYYGG   41 (419)
Q Consensus         2 ~~~~dvvIIGaGi~Gl~aA~~La~-~G~~-V~vlE~~~~~GG   41 (419)
                      ++++.|+|+|||-+|-..+.+|.+ .|++ |..+|-++..=|
T Consensus         1 ~~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G   42 (126)
T d2dt5a2           1 NRKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG   42 (126)
T ss_dssp             TSCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT
T ss_pred             CCCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC
Confidence            357899999999999988887753 5676 556776665433

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.12  E-value=0.1  Score=44.52  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=31.7

Q ss_pred             CcceEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++.+|+|+|| |..|...+.+|.++|++|+++-|+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            4567999997 99999999999999999999988644

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.098  Score=42.31  Aligned_cols=42  Identities=12%  Similarity=0.128  Sum_probs=33.5

Q ss_pred             HHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768          241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (419)
Q Consensus       241 ~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~  286 (419)
                      .++++|++++++++|++|+.+ ++   .|++ +|+++.+|.||.+++
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~-~~---~V~l~dG~~i~~d~lViAtG  134 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVR-DN---MVKLNDGSQITYEKCLIATG  134 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGG-GT---EEEETTSCEEEEEEEEECCC
T ss_pred             HHHHCCeEEEeCCEEEEeecc-Cc---eeeeccceeeccceEEEeee
Confidence            346789999999999999863 44   3566 899999999887765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.78  E-value=0.093  Score=44.10  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=31.0

Q ss_pred             cceEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +++|+|.|| |..|-..+.+|.++|++|+.+++++
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            357999998 9999999999999999999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.69  E-value=0.1  Score=41.63  Aligned_cols=34  Identities=24%  Similarity=0.135  Sum_probs=28.1

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      .-.|+|+|+|..|+.++..+...|. +|++.|.++
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3479999999999999988877775 899998754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.68  E-value=0.1  Score=40.76  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=29.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~   38 (419)
                      -.|+|+|+|..|+.++..+...|. +|++.|.++.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            469999999999999999999996 6888888654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.26  E-value=0.096  Score=39.79  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=28.6

Q ss_pred             eEEEECCCchHHHHhhccccCC-CeEEEeccCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~   37 (419)
                      ++.+||+|--|.+.|..|.++| ++|.+.++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            6999999999999999887777 9999999865

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.16  E-value=0.13  Score=40.78  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             cceEEEEC-CCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|+|.| +|-.|..+|..|+++|.+|+++.|+.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            35688888 59999999999999999999999975

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.98  E-value=0.16  Score=36.87  Aligned_cols=34  Identities=21%  Similarity=0.425  Sum_probs=30.2

Q ss_pred             ceEEEECCCc-----------hHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGTGL-----------KECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi-----------~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|+|||+|.           ++..|...|.+.|++|+++--|+.
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            6799999996           678888899999999999998876

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.79  E-value=0.27  Score=42.59  Aligned_cols=55  Identities=11%  Similarity=-0.036  Sum_probs=38.1

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCe---EEEcCEEEeCCCCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE---TAKCKKVVCDPSYL  288 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g~---~i~ad~VV~~~~~~  288 (419)
                      .+.+-|...++..+..|++|++|++|+.+ +++......   .++   +..||+||++.+..
T Consensus       114 ~~~~yl~~~~~~~~~~I~~~t~V~~v~~~-~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         114 TIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGSWVVTYKGTKAGSPISKDIFDAVSICNGHY  174 (335)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTEEEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             HHHHHHHHHHHHhhhcccCceEEEEEEec-CCEEEEEEEecCCCCeEEEEEeeEEEEccccc
Confidence            45555666677778899999999999984 776432221   222   45799999877654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.74  E-value=0.19  Score=35.75  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=32.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..+|.|+|||=-|-..|....+-|++|.++|.++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            36799999999999999999999999999998755

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.62  E-value=0.16  Score=39.55  Aligned_cols=32  Identities=16%  Similarity=0.342  Sum_probs=28.6

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      ..+|+|+|+|=++-++++.|++.| +|.|+-|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            457999999999999999999888 99999884

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.48  E-value=0.13  Score=39.97  Aligned_cols=34  Identities=18%  Similarity=0.110  Sum_probs=30.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ...|+|+|+|=++-++++.|.+.+.+|+|+-|+.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            3579999999999999999999889999998863

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.17  E-value=0.12  Score=39.27  Aligned_cols=35  Identities=14%  Similarity=0.023  Sum_probs=32.5

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ...++|+|=|.-|-.+|.+|...|.+|+|.|..|.
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            45899999999999999999999999999999874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.07  E-value=0.15  Score=39.66  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=28.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~   38 (419)
                      -.|+|+|+|..|+.++..++..|. +|++++.++.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            358899999999999999988874 7999988653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.69  E-value=0.17  Score=37.84  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=27.5

Q ss_pred             eEEEEC-CCchHHHHhhccccCCC--eEEEeccC
Q 014768            6 DVIVLG-TGLKECILSGLLSVDGL--KVLHMDRN   36 (419)
Q Consensus         6 dvvIIG-aGi~Gl~aA~~La~~G~--~V~vlE~~   36 (419)
                      +|.||| +|-.|.++|+.|..+|.  ++.++|.+
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            799999 69999999999999985  79999863

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=87.51  E-value=0.16  Score=38.81  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~   36 (419)
                      ...|+|||+|-.|-.+|..|...|. +|+|.-|+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            4679999999999999999999997 69999875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=87.18  E-value=0.22  Score=38.99  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=30.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~   39 (419)
                      .+|+|+|+|=+|-++++.|.+.|. +++|+.|+..-
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~   54 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF   54 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence            579999999999999999999985 79999987543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.85  E-value=0.13  Score=41.86  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=30.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      ..+|+|||+|-+|.=+|..|++.+.+++++=+..
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            3579999999999999999999999888876653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.2  Score=37.56  Aligned_cols=32  Identities=31%  Similarity=0.228  Sum_probs=26.4

Q ss_pred             eEEEEC-CCchHHHHhhccc-cC--CCeEEEeccCC
Q 014768            6 DVIVLG-TGLKECILSGLLS-VD--GLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIG-aGi~Gl~aA~~La-~~--G~~V~vlE~~~   37 (419)
                      +|.||| +|-.|.++|+.|+ +.  +.++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            799999 5999999999886 33  47999999753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.96  E-value=0.18  Score=39.23  Aligned_cols=33  Identities=12%  Similarity=0.089  Sum_probs=28.9

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~   37 (419)
                      -.|+|+|+|..|+.+...+...|. +|.+.|.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            469999999999999999998985 799998864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.35  E-value=0.25  Score=40.85  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=25.6

Q ss_pred             eEEEE-CC-CchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVL-GT-GLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvII-Ga-Gi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      +|||| || +=-|+++|..|+++|++|+++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            45444 65 5578889999999999999999864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.32  E-value=0.46  Score=36.01  Aligned_cols=46  Identities=17%  Similarity=0.153  Sum_probs=33.3

Q ss_pred             HHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCe--EEEcCEEEeCCC
Q 014768          237 AFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGE--TAKCKKVVCDPS  286 (419)
Q Consensus       237 al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~--~i~ad~VV~~~~  286 (419)
                      .+...++..|++++.++.|.+|.  ++|..  +..+|+  .+.||.||++.+
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i~--~~gv~--~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKID--DDGLH--VVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEE--TTEEE--EEETTEEEEECCSEEEECCC
T ss_pred             HHHHHHhhCCeEEEeeeEEEEEc--CCCCE--EecCCeEEEEECCEEEECCC
Confidence            34566788899999999999986  35533  233443  589999998775

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=85.22  E-value=0.19  Score=41.61  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=29.2

Q ss_pred             ceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~   36 (419)
                      .+|+|||+|=.|..+|..|++.|. +++++|..
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            579999999999999999999995 89999863

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.09  E-value=0.32  Score=37.67  Aligned_cols=34  Identities=18%  Similarity=0.129  Sum_probs=29.3

Q ss_pred             ceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~   38 (419)
                      -.|+|+|+|-.|++++..++..| .+|++.+.++.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            35999999999999999999988 58999988653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.07  E-value=0.29  Score=41.51  Aligned_cols=32  Identities=19%  Similarity=0.075  Sum_probs=26.2

Q ss_pred             eEEEEC-CCchHHHHhhccccCCCeEEEeccCC
Q 014768            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         6 dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      -++|.| +|=-|.++|..|+++|.+|++.+++.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            356666 46678899999999999999999853

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.24  Score=42.94  Aligned_cols=33  Identities=24%  Similarity=0.214  Sum_probs=29.7

Q ss_pred             eEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|+|+|| |.-|...+..|.++|++|+++++-..
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~   35 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN   35 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6999998 99999999999999999999986443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.03  E-value=0.22  Score=38.54  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=28.0

Q ss_pred             ceEEEECCCchHHHHhhccccCC-CeEEEeccCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~   37 (419)
                      -.|+|+|+|..|+.++..+...| ..|++.++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            46999999999999998887777 5778888875

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=84.76  E-value=0.3  Score=35.59  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=27.2

Q ss_pred             eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ++||+|.|-.|...+..|.  |.+|.|+|.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            6899999999999999995  667899998765

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.58  E-value=0.2  Score=38.85  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=27.0

Q ss_pred             cceEEEECCCchHHHHhhccccCCCe-EEEeccCC
Q 014768            4 EYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRND   37 (419)
Q Consensus         4 ~~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~   37 (419)
                      .-+|+|+|+|..|+.++..+...|.+ |.+.+.++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            34799999999999999988888875 45666543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=84.37  E-value=0.31  Score=42.31  Aligned_cols=34  Identities=29%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             ceEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      .+|+|.|| |..|...+..|.++|++|.+++++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            58999995 99999999999999999999998643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.31  E-value=0.2  Score=38.64  Aligned_cols=33  Identities=12%  Similarity=0.217  Sum_probs=28.2

Q ss_pred             ceEEEEC-CCchHHHHhhccccCC-CeEEEeccCC
Q 014768            5 YDVIVLG-TGLKECILSGLLSVDG-LKVLHMDRND   37 (419)
Q Consensus         5 ~dvvIIG-aGi~Gl~aA~~La~~G-~~V~vlE~~~   37 (419)
                      -.|+|+| +|..|+.++..+...| .+|++++.++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            4699999 5999999998888888 5999999874

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=83.83  E-value=0.47  Score=39.59  Aligned_cols=36  Identities=8%  Similarity=0.014  Sum_probs=29.5

Q ss_pred             CcceEEEECC-C--chHHHHhhccccCCCeEEEeccCCC
Q 014768            3 EEYDVIVLGT-G--LKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         3 ~~~dvvIIGa-G--i~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +...++|.|| |  =-|.++|..|+++|++|++..+++.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4557889986 4  2688899999999999999998754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.81  E-value=0.21  Score=37.95  Aligned_cols=27  Identities=22%  Similarity=0.155  Sum_probs=23.8

Q ss_pred             CCCcceEEEECC-CchHHHHhhccccCC
Q 014768            1 MDEEYDVIVLGT-GLKECILSGLLSVDG   27 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G   27 (419)
                      |.+..+|.|||| |..|.++|+.|+..+
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            666679999996 999999999999765

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=83.45  E-value=0.37  Score=40.06  Aligned_cols=36  Identities=8%  Similarity=0.105  Sum_probs=28.5

Q ss_pred             CCCcceEEEECC-Cc--hHHHHhhccccCCCeEEEeccC
Q 014768            1 MDEEYDVIVLGT-GL--KECILSGLLSVDGLKVLHMDRN   36 (419)
Q Consensus         1 m~~~~dvvIIGa-Gi--~Gl~aA~~La~~G~~V~vlE~~   36 (419)
                      |.+...++|.|| |-  -|..+|..|+++|.+|++..++
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            345567899985 43  5788899999999999998765

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.37  E-value=0.43  Score=38.66  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=29.9

Q ss_pred             ceEEEECCCchHHHHhhccccC--------------------C-CeEEEeccCCCC
Q 014768            5 YDVIVLGTGLKECILSGLLSVD--------------------G-LKVLHMDRNDYY   39 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~--------------------G-~~V~vlE~~~~~   39 (419)
                      .+|+|||+|-.++=||..|.+.                    | .+|+++-|+...
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            5899999999999999999883                    5 689999987553

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.99  E-value=0.86  Score=35.36  Aligned_cols=38  Identities=26%  Similarity=0.225  Sum_probs=33.6

Q ss_pred             ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~   42 (419)
                      ..+.|||.|..|-..|..|..-|.+|.++++...-+..
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~   80 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPW   80 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccccce
Confidence            57999999999999999999999999999997765443

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.32  E-value=0.37  Score=39.29  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=28.5

Q ss_pred             eEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      +|+|.|| |=-|.+.|..|+++|++|.+++++..
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            6889988 56688899999999999999998754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=82.28  E-value=0.4  Score=39.80  Aligned_cols=37  Identities=16%  Similarity=0.102  Sum_probs=27.9

Q ss_pred             CCCcceEEEECCC-chHHHHhhccccCCCeEEEeccCC
Q 014768            1 MDEEYDVIVLGTG-LKECILSGLLSVDGLKVLHMDRND   37 (419)
Q Consensus         1 m~~~~dvvIIGaG-i~Gl~aA~~La~~G~~V~vlE~~~   37 (419)
                      |.+..-++|.||+ =-|.++|..|+++|++|++..+++
T Consensus         1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4444445666663 358899999999999999999864

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.22  E-value=0.58  Score=40.40  Aligned_cols=35  Identities=20%  Similarity=0.046  Sum_probs=31.0

Q ss_pred             eEEEECC-CchHHHHhhccccCCCeEEEeccCCCCC
Q 014768            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDYYG   40 (419)
Q Consensus         6 dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~~G   40 (419)
                      +|+|.|| |..|...+..|.++|++|+++++.....
T Consensus         4 KILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~   39 (346)
T d1ek6a_           4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAF   39 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSC
T ss_pred             eEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccc
Confidence            7999998 9999999999999999999999855543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=82.14  E-value=1.5  Score=37.37  Aligned_cols=56  Identities=20%  Similarity=0.160  Sum_probs=43.7

Q ss_pred             cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (419)
Q Consensus       231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~  286 (419)
                      ...|.++|.+.+++.+++++.++.+..+..++++++.++..    +|+  .+.|+.||.+++
T Consensus       142 G~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtG  203 (330)
T d1neka2         142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATG  203 (330)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCC
Confidence            34689999999999999999999999998755677666542    454  478899887664

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.69  E-value=3.1  Score=29.77  Aligned_cols=52  Identities=15%  Similarity=0.015  Sum_probs=37.9

Q ss_pred             cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C---C---eEEEcCEEEeCC
Q 014768          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---G---ETAKCKKVVCDP  285 (419)
Q Consensus       233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~---g---~~i~ad~VV~~~  285 (419)
                      .+.+.+.+..+..+..++++++|.+|.-+ +.++.+|++ +   +   +++.+|.|+...
T Consensus        67 ~~~~~~~~~~~~~~i~~~~~~~v~~i~G~-~~~v~~v~l~~~~~~e~~~~l~~dgvFv~i  125 (126)
T d1trba2          67 ILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAI  125 (126)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECS
T ss_pred             HHHHHHHHhhcccceeEecceEEEEEECC-CCceEEEEEEECCCCceEEEEECCEEEEEe
Confidence            35555655556678899999999999973 667888876 3   2   468899887643

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.62  E-value=0.55  Score=37.71  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=28.0

Q ss_pred             ceEEEECCCchHHHHhhccc--------------------cCC-CeEEEeccCCC
Q 014768            5 YDVIVLGTGLKECILSGLLS--------------------VDG-LKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGaGi~Gl~aA~~La--------------------~~G-~~V~vlE~~~~   38 (419)
                      .+|+|||+|-.++=||..|.                    +.| .+|+++-|+..
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            58999999999999998776                    566 57999988643

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=81.59  E-value=1.1  Score=38.90  Aligned_cols=54  Identities=13%  Similarity=0.127  Sum_probs=38.8

Q ss_pred             cHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-C-----Ce--EEEcCE-EEeCCCC
Q 014768          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-E-----GE--TAKCKK-VVCDPSY  287 (419)
Q Consensus       233 ~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~-~-----g~--~i~ad~-VV~~~~~  287 (419)
                      ....++...+..+ +.+|++++.|++|..+ ++++++|+. +     ++  ++.|+. ||++++.
T Consensus       191 s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d-~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGa  254 (360)
T d1kdga1         191 GPVATYLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGA  254 (360)
T ss_dssp             HHHHTHHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHH
T ss_pred             cccchhhhhhhcccccccccCcEEEEEEEe-CCEEEEEEEEecccCcceEEEEEECCEEEEechh
Confidence            4555666555554 4799999999999995 899999987 2     22  345544 8887754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.89  E-value=1  Score=35.26  Aligned_cols=48  Identities=17%  Similarity=0.173  Sum_probs=34.5

Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe--EEEcCEEEeCCCCC
Q 014768          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVVCDPSYL  288 (419)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~--~i~ad~VV~~~~~~  288 (419)
                      +.+++.|++++++++|++|+. +++.++.... +|+  ++.+|.+|.+++..
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~-~~~~v~~~~~~~g~~~~~~~D~li~a~G~~  114 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQP-KEHQVTVKDLVSGEERVENYDKLIISPGAV  114 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEET-TTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHHHHCCcEEEEeeceeeEee-ccccceeeecccccccccccceeeEeecce
Confidence            455678999999999999987 3555443333 443  57899999887654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.45  E-value=0.67  Score=37.70  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=28.9

Q ss_pred             ceEEEECC-CchHHHHhhccccCCCeEEEeccCCC
Q 014768            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (419)
Q Consensus         5 ~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~~   38 (419)
                      ..|+|.|| |=-|.++|..|+++|++|.+++++..
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            46899998 55789999999999999999987654