Citrus Sinensis ID: 014781

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MNTENEKDGKKKKKRKLGINEAKKNKDERFNNEDEVSGVLNQGLKHHLELEENTSLHEQKNDLEEEGENNKKKKAMSMGKHSGGDKKVSRTKKGVKPNDPSESSAQKERPKKVSFSDHVQVVPSSEAKSDKNDGFIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVLEARLAYNSKGTTV
cccccccHHHHHHHHHHccHHHHHHHHHHcccccHHHHHccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHccccccc
cccccccccccccccccccccccccccccccccccEcEEEccccccccccccccccccccccccccccccccccHHccccccccccEEEccccccccccccccccccccccEEEccccEEEccccccccccccccEccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccHHHHHccccHHHHHHHHHHHHHHcHcHccccHHHHHHHHHHHHcHHHHHHHHHHccccccc
mntenekdgkkkkkrkLGINeakknkderfnnedeVSGVLNQGLKHHleleentslheqknDLEEEGENNKKKKAMsmgkhsggdkkvsrtkkgvkpndpsessaqkerpkkvsfsdhvqvvpsseaksdkndgfirgkrfsleEDEMIKKAVINYIEAHRlgedglnmvlhcrsypeIKHCWKEIgaalpwrpcesiYYRAHILFerdenrkwtpEELELVRKFYEKHGSDWKTMADTLGkhrfhvkdawrriklpnqkkgqwSQEEYQKLFALVNMDLRMKASeekrtkhgmlrdNISWEAISEKLSTRTNAICCMkwydqltspmvaegkwadtddfhlvnalsgldaccmddvdwdnllehrsgtfcRKRWNQMVKHLgtdgnksfpEQVEILSTRYCPDVLEARLAYNSKGTTV
mntenekdgkkkkkrklgineakknkderfnnedEVSGVLNQGLKHHLELeentslheqkndleeegennkkkkamsmgkhsggdkkvsrtkkgvkpndpsessaqkerpkkvsfsdhvqvvpsseaksdkndgfirgkrfsleedemIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILferdenrkwtpEELELVRKFYEKHGSDWKTMADTLGKHRfhvkdawrriklpnqkkgqwsqEEYQKLFALVNMDLRMKASeekrtkhgmlrdniSWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQMVKHlgtdgnksfPEQVEILSTRYCPDVLEARlaynskgttv
MNTENEkdgkkkkkrkLGINEAKKNKDERFNNEDEVSGVLNQGLKHHLELEENTSLHEQKNDLeeegennkkkkAMSMGKHSGGDKKVSRTKKGVKPNDPSESSAQKERPKKVSFSDHVQVVPSSEAKSDKNDGFIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVLEARLAYNSKGTTV
********************************************************************************************************************************************FSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDL**************LRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVLEARLAY*******
********************************************************************************************************************************************FSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI*********WSQEEYQKLFALVNMDLRMKA*******HGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPM*****WADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPD**E*****NS*****
***************KLGINEAKKNKDERFNNEDEVSGVLNQGLKHHLELEENTSL****************************************************************VVPSSEAKSDKNDGFIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLP********QEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVLEARLAYNSKGTTV
*************************************************************************************************************PKKVSFSDHVQVVPSS*A****NDGFIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRM**********GMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVLEAR**********
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MNTENEKDGKKKKKRKLGINEAKKNKDERFNNEDEVSGVLNQGLKHHLELEExxxxxxxxxxxxxxxxxxxxxxxxSMGKHSGGDKKVSRTKKGVKPNDPSESSAQKERPKKVSFSDHVQVVPSSEAKSDKNDGFIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVLEARLAYNSKGTTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query419 2.2.26 [Sep-21-2011]
Q9Y222 760 Cyclin-D-binding Myb-like no no 0.453 0.25 0.292 2e-18
Q8CE22 761 Cyclin-D-binding Myb-like yes no 0.453 0.249 0.292 3e-18
Q66HG1 760 Cyclin-D-binding Myb-like yes no 0.453 0.25 0.292 3e-18
Q6DG03 645 Cyclin-D-binding Myb-like no no 0.541 0.351 0.266 1e-14
Q12457570 Myb domain-containing pro yes no 0.620 0.456 0.271 5e-12
Q62187859 Transcription termination no no 0.532 0.259 0.243 9e-11
Q15361905 Transcription termination no no 0.632 0.292 0.211 2e-09
P52551 743 Myb-related protein B OS= N/A no 0.365 0.205 0.290 3e-08
Q05950595 DNA-binding protein REB1 yes no 0.443 0.312 0.291 2e-07
Q9UUI6466 Replication termination f yes no 0.408 0.366 0.235 2e-07
>sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1 OS=Homo sapiens GN=DMTF1 PE=1 SV=1 Back     alignment and function desciption
 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 15/205 (7%)

Query: 193 RPCESIYYRAHILFE-RDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAW 251
           RP  ++Y R   +++ R+   K+TPEE+E +++   KHG+DW T+   LG+    VKD  
Sbjct: 205 RPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRC 264

Query: 252 RRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHG-MLRDNISWEAISEKLST 310
           R +K      G+W++EE ++L  +V+        E   T+ G ++   +SW A++E++ T
Sbjct: 265 RLMK-DTCNTGKWTEEEEKRLAEVVH--------ELTSTEPGDIVTQGVSWAAVAERVGT 315

Query: 311 RTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEH----R 366
           R+   C  KW + L        +W   D+ +L+  ++ LD    +D++WD L E     R
Sbjct: 316 RSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVR 375

Query: 367 SGTFCRKRWNQMVKHLGTDGNKSFP 391
           S  + R +W  + + +    + SFP
Sbjct: 376 SPQWLRSKWWTIKRQIANHKDVSFP 400
Transcriptional activator which activates the CDKN2A/ARF locus in response to Ras-Raf signaling, thereby promoting p53/TP53-dependent growth arrest (By similarity). Binds to the consensus sequence 5'-CCCG[GT]ATGT-3' (By similarity). Isoform 1 may cooperate with MYB to activate transcription of the ANPEP gene. Isoform 2 may antagonize transcriptional activation by isoform 1.
Homo sapiens (taxid: 9606)
>sp|Q8CE22|DMTF1_MOUSE Cyclin-D-binding Myb-like transcription factor 1 OS=Mus musculus GN=Dmtf1 PE=1 SV=2 Back     alignment and function description
>sp|Q66HG1|DMTF1_RAT Cyclin-D-binding Myb-like transcription factor 1 OS=Rattus norvegicus GN=Dmtf1 PE=2 SV=2 Back     alignment and function description
>sp|Q6DG03|DMTF1_DANRE Cyclin-D-binding Myb-like transcription factor 1 OS=Danio rerio GN=dmtf1 PE=2 SV=1 Back     alignment and function description
>sp|Q12457|YD026_YEAST Myb domain-containing protein YDR026C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR026C PE=1 SV=1 Back     alignment and function description
>sp|Q62187|TTF1_MOUSE Transcription termination factor 1 OS=Mus musculus GN=Ttf1 PE=1 SV=2 Back     alignment and function description
>sp|Q15361|TTF1_HUMAN Transcription termination factor 1 OS=Homo sapiens GN=TTF1 PE=1 SV=3 Back     alignment and function description
>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2 Back     alignment and function description
>sp|Q05950|REB1_KLULA DNA-binding protein REB1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REB1 PE=3 SV=2 Back     alignment and function description
>sp|Q9UUI6|RTF_SCHPO Replication termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtf1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
224072542 697 predicted protein [Populus trichocarpa] 0.835 0.502 0.682 1e-145
224136139 538 predicted protein [Populus trichocarpa] 0.847 0.659 0.667 1e-140
255577118 678 DNA binding protein, putative [Ricinus c 0.782 0.483 0.687 1e-137
225435385 686 PREDICTED: uncharacterized protein LOC10 0.828 0.505 0.651 1e-136
449480103 530 PREDICTED: cyclin-D-binding Myb-like tra 0.785 0.620 0.661 1e-131
449433105 537 PREDICTED: cyclin-D-binding Myb-like tra 0.773 0.603 0.665 1e-130
356548105326 PREDICTED: cyclin-D-binding Myb-like tra 0.758 0.975 0.643 1e-123
15237544 588 myb family transcription factor [Arabido 0.739 0.527 0.560 1e-105
297801470 567 hypothetical protein ARALYDRAFT_916116 [ 0.758 0.560 0.542 1e-103
218198035424 hypothetical protein OsI_22667 [Oryza sa 0.758 0.75 0.501 6e-95
>gi|224072542|ref|XP_002303776.1| predicted protein [Populus trichocarpa] gi|222841208|gb|EEE78755.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/356 (68%), Positives = 284/356 (79%), Gaps = 6/356 (1%)

Query: 66  EGENNKKKKAMSMGKHSG--GDKKVSRTKKGVKPNDPSESSAQKERPKKVSFSDHVQVVP 123
           EG N +KKKA S+   S     ++V+  ++  +   PSE S  K   K+VSF + V++ P
Sbjct: 338 EGGNKRKKKAKSLENRSKEKSSERVTEMEEDAESTRPSEKSLSKVTSKRVSFCEDVEIFP 397

Query: 124 SSEAKSDK----NDGFIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEI 179
           SS+  SDK     DGF+RGKRFSLEEDEM+K+AV+NYI  H LG DGLNMVL+C+ +P I
Sbjct: 398 SSDGPSDKKAVGEDGFVRGKRFSLEEDEMVKEAVLNYINVHGLGADGLNMVLNCKKHPAI 457

Query: 180 KHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADT 239
           KHCWKEIGAALPWRP ES+YYRAHILFERD+N  WTPEE +L+RKF+EKHGSDWKT+A+ 
Sbjct: 458 KHCWKEIGAALPWRPRESVYYRAHILFERDQNSSWTPEEYDLIRKFHEKHGSDWKTLAEA 517

Query: 240 LGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNI 299
           LGKHRFHVKD WRRIKL N KKG+WSQ+EYQ LF  VN+DLR+KA  E++TKHGMLRDNI
Sbjct: 518 LGKHRFHVKDTWRRIKLINMKKGKWSQDEYQSLFDSVNLDLRLKAFVERKTKHGMLRDNI 577

Query: 300 SWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDW 359
           SW AISEKL TRT+A+CC KWYDQLTSPMVAEGKW DTDD+ L+  L  LDACCM+DVDW
Sbjct: 578 SWTAISEKLETRTDALCCQKWYDQLTSPMVAEGKWLDTDDYRLLMELYDLDACCMEDVDW 637

Query: 360 DNLLEHRSGTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVLEARLAYNSK 415
           DNLLEHRSG  CRKRWNQMVKHLG   NKSF +QV++L  RYC DVLEAR AYNSK
Sbjct: 638 DNLLEHRSGELCRKRWNQMVKHLGDHRNKSFADQVDVLINRYCHDVLEAREAYNSK 693

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224136139|ref|XP_002322249.1| predicted protein [Populus trichocarpa] gi|222869245|gb|EEF06376.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255577118|ref|XP_002529443.1| DNA binding protein, putative [Ricinus communis] gi|223531120|gb|EEF32969.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225435385|ref|XP_002282624.1| PREDICTED: uncharacterized protein LOC100260316 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449480103|ref|XP_004155800.1| PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449433105|ref|XP_004134338.1| PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356548105|ref|XP_003542444.1| PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] Back     alignment and taxonomy information
>gi|15237544|ref|NP_198918.1| myb family transcription factor [Arabidopsis thaliana] gi|9759148|dbj|BAB09704.1| unnamed protein product [Arabidopsis thaliana] gi|41619532|gb|AAS10123.1| MYB transcription factor [Arabidopsis thaliana] gi|225879080|dbj|BAH30610.1| hypothetical protein [Arabidopsis thaliana] gi|332007243|gb|AED94626.1| myb family transcription factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297801470|ref|XP_002868619.1| hypothetical protein ARALYDRAFT_916116 [Arabidopsis lyrata subsp. lyrata] gi|297314455|gb|EFH44878.1| hypothetical protein ARALYDRAFT_916116 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|218198035|gb|EEC80462.1| hypothetical protein OsI_22667 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
TAIR|locus:2163066588 AT5G41020 [Arabidopsis thalian 0.787 0.561 0.537 4.2e-102
UNIPROTKB|J3QLN9365 DMTF1 "Cyclin-D-binding Myb-li 0.651 0.747 0.271 5.3e-24
UNIPROTKB|D4A658408 Dmtf1 "Cyclin-D-binding Myb-li 0.568 0.583 0.279 3.8e-22
UNIPROTKB|E7EPA0 690 DMTF1 "Cyclin-D-binding Myb-li 0.670 0.407 0.267 6.8e-22
UNIPROTKB|Q9Y222 760 DMTF1 "Cyclin-D-binding Myb-li 0.718 0.396 0.263 8.3e-22
UNIPROTKB|F1SBX7 762 DMTF1 "Uncharacterized protein 0.718 0.395 0.263 1.1e-21
UNIPROTKB|E1BQ00 761 DMTF1 "Uncharacterized protein 0.651 0.358 0.271 1.6e-21
UNIPROTKB|E2RM22 762 DMTF1 "Uncharacterized protein 0.718 0.395 0.260 2.1e-21
RGD|70966 760 Dmtf1 "cyclin D binding myb-li 0.568 0.313 0.279 3.8e-21
MGI|MGI:1344415 761 Dmtf1 "cyclin D binding myb-li 0.568 0.312 0.279 3.8e-21
TAIR|locus:2163066 AT5G41020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 181/337 (53%), Positives = 240/337 (71%)

Query:    86 KKVSRTKKGVKPNDPSES--SAQKERPKKVSFSDHVQVVPSSEAKSDKNDG-----FIRG 138
             KK S   +  + +D S+   +      K+V FSD V+  PS + +  ++D       +RG
Sbjct:   246 KKQSEVSEAEEKSDKSDEDLTTPSTSSKRVKFSDQVEFFPSDDDEGTEDDDEEEVKVVRG 305

Query:   139 KRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESI 198
             KRF+ EEDEM+K AV+ YI+ H LG++G+ MV+ C++YP++K CWKEI +ALPWR   S+
Sbjct:   306 KRFTKEEDEMVKNAVLEYIDNHALGDEGIKMVMECKAYPQLKGCWKEITSALPWRTYNSV 365

Query:   199 YYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPN 258
             Y+RAH +FE      WT E++ELV +F + HG+DWKT+AD +GKHR HVKDAWRR +L  
Sbjct:   366 YHRAHTIFEAGSQGIWTKEDIELVMEFQKTHGNDWKTLADAMGKHRKHVKDAWRRGRLAG 425

Query:   259 QKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCM 318
             +KKG W +EEYQ LF LVN DLRMKA +EK +KHGML+DNI W AIS+ L TR +  CC 
Sbjct:   426 KKKGHWMREEYQNLFDLVNKDLRMKAFKEKHSKHGMLKDNIPWMAISDVLETRDHVTCCQ 485

Query:   319 KWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQM 378
             KWY+QL SPMVA+G WA+ DD+ L+  L  LDA C+DDVDWDNLLE+R G  CRKRWNQM
Sbjct:   486 KWYEQLISPMVAKGMWANVDDYRLLEELLKLDAACIDDVDWDNLLENRDGEACRKRWNQM 545

Query:   379 VKHLGTDGNKSFPEQVEILSTRYCPDVLEARLAYNSK 415
             + H+G   +K+F EQVEILS RYCPD+ E R  ++++
Sbjct:   546 IIHIGVPKSKTFAEQVEILSDRYCPDIAEDREDFDNR 582
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
UNIPROTKB|J3QLN9 DMTF1 "Cyclin-D-binding Myb-like transcription factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D4A658 Dmtf1 "Cyclin-D-binding Myb-like transcription factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E7EPA0 DMTF1 "Cyclin-D-binding Myb-like transcription factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y222 DMTF1 "Cyclin-D-binding Myb-like transcription factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBX7 DMTF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQ00 DMTF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RM22 DMTF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|70966 Dmtf1 "cyclin D binding myb-like transcription factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1344415 Dmtf1 "cyclin D binding myb-like transcription factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 2e-14
COG5147512 COG5147, REB1, Myb superfamily proteins, including 0.004
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information 
 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 214 WTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKL 272
           WT EE E + K  EK+G+DWK +A+ LG+     +D WRR   P + +G W++EE Q+L
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEELGRTPSACRDRWRRKLRPKRSRGPWTKEEDQRL 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 419
KOG0051607 consensus RNA polymerase I termination factor, Myb 100.0
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.95
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.94
PLN03212249 Transcription repressor MYB5; Provisional 99.9
PLN03091 459 hypothetical protein; Provisional 99.86
PLN03212249 Transcription repressor MYB5; Provisional 99.84
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.84
PLN03091 459 hypothetical protein; Provisional 99.8
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.78
COG5147512 REB1 Myb superfamily proteins, including transcrip 99.71
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.63
COG5147 512 REB1 Myb superfamily proteins, including transcrip 99.55
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.52
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.42
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 99.31
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 99.21
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.2
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.15
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.88
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.74
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.73
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.63
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.23
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 97.05
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 96.83
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 96.75
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 96.67
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 96.59
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 96.57
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.56
KOG1279506 consensus Chromatin remodeling factor subunit and 96.44
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 96.3
KOG1279 506 consensus Chromatin remodeling factor subunit and 95.82
COG5259 531 RSC8 RSC chromatin remodeling complex subunit RSC8 95.73
PRK13923170 putative spore coat protein regulator protein YlbO 95.58
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 95.57
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 94.68
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 94.66
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 94.63
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 94.56
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 93.14
PRK13923170 putative spore coat protein regulator protein YlbO 91.76
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 90.74
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 90.26
PLN031421033 Probable chromatin-remodeling complex ATPase chain 90.08
KOG4282 345 consensus Transcription factor GT-2 and related pr 87.43
KOG4282345 consensus Transcription factor GT-2 and related pr 87.3
PF1340442 HTH_AsnC-type: AsnC-type helix-turn-helix domain; 86.1
PLN031421033 Probable chromatin-remodeling complex ATPase chain 82.54
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 82.4
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 81.78
KOG1194 534 consensus Predicted DNA-binding protein, contains 81.77
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 80.23
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-43  Score=369.13  Aligned_cols=285  Identities=29%  Similarity=0.494  Sum_probs=261.5

Q ss_pred             CccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCc-chhhhhHHHHHhhCCCCCHHHHHHHHHHhhCC--CCC
Q 014781          135 FIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSY-PEIKHCWKEIGAALPWRPCESIYYRAHILFER--DEN  211 (419)
Q Consensus       135 ~~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~-~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~--~~k  211 (419)
                      -++.+.|+++|+.+|.++|..|+..+||+.+++++.++++.+ ..++.||..|...||.|+..++|.+.+|.+++  +++
T Consensus       305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccccc
Confidence            477899999999999999999999999999999999998876 88999999999999999999999999888876  389


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccCC--CCCCCCCHHHHHHHHHHHHHHHHhhhhH---
Q 014781          212 RKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPN--QKKGQWSQEEYQKLFALVNMDLRMKASE---  286 (419)
Q Consensus       212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~~--~~kg~WT~EED~~L~~lV~~~l~~~~~~---  286 (419)
                      |.||+||++.|..+|.+||++|..||..|||+|.+|+++|+++..+.  .++|+||.||++.|+.+|+++++....+   
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~  464 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKALGRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQAS  464 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHHccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999998766  4899999999999999999988744332   


Q ss_pred             -----HHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCCh-hchHHHHHHHHcCCCCCCCCCCcc
Q 014781          287 -----EKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWAD-TDDFHLVNALSGLDACCMDDVDWD  360 (419)
Q Consensus       287 -----e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~-eED~~Ll~~i~~~g~~~e~~i~W~  360 (419)
                           ...+..+++.++|+|+.||+.+++|++.|||.+|+.++..|+++.+.|.. .+...||+.|..++..+++.|||.
T Consensus       465 n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~~IDW~  544 (607)
T KOG0051|consen  465 NTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEESPIDWK  544 (607)
T ss_pred             ccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCCccCHH
Confidence                 12234445678999999999999999999999999999999999999998 578999999999999999999999


Q ss_pred             cc---cCCCC-HHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccchHHHHhhcCCCCCCC
Q 014781          361 NL---LEHRS-GTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVLEARLAYNSKGTTV  419 (419)
Q Consensus       361 ~I---~~~Rs-~~qcr~RW~~l~k~v~~~~~~~f~eiv~~L~~~~~p~l~~~~~~~~~~~~~~  419 (419)
                      .|   ++|++ +.+|+.+|.+|+..|++++..+|+||+++|++.|+|.+-+....|.+-|+.|
T Consensus       545 ~l~~~~~g~~~~~e~r~q~~~lk~~I~~~k~kt~~E~~~~l~e~~~pl~~e~~s~fsn~~~~~  607 (607)
T KOG0051|consen  545 SLAEYAPGESTGEELRLQFERLKKKIPGWKKKTFSEIVDILIEDLLPLPTEDGSPFSNDSYDV  607 (607)
T ss_pred             HHHHhCCCCCcHHHHHHHHHhHhhccCCCCCccHHHHHHHHHHHhccCcccccCCcccccCCC
Confidence            99   45776 9999999999999999999999999999999999999988889999888765

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 1e-06
2llk_A73 Solution Nmr Structure Of The N-Terminal Myb-Like 1 3e-05
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure 
Iteration: 1

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 213 KWTPEELELVRKFYEKHGSD-WKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQ 270
           +WT EE E ++K  E++G+D WK +A+ L  +     +  W+++  P   KG W++EE Q
Sbjct: 8   RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQ 67
Query: 271 KLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVA 330
           ++  LV              K+G  R    W  I++ L  R    C  +W++ L +P V 
Sbjct: 68  RVIKLVQ-------------KYGPKR----WSVIAKHLKGRIGKQCRERWHNHL-NPEVK 109
Query: 331 EGKWADTDDFHLVNALSGLDACCMDDVDWDNLLEHRSGTFCRKRWNQMVK 380
           +  W + +D  +  A   L     +      LL  R+    +  WN  ++
Sbjct: 110 KTSWTEEEDRIIYQAHKRLGNRWAEIA---KLLPGRTDNAIKNHWNSTMR 156
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain Of The Human Cyclin-D-Binding Transcription Factor 1 (Hdmp1), Northeast Structural Genomics Consortium (Nesg) Target Id Hr8011a Length = 73 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 2e-14
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 1e-06
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-06
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 3e-10
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 3e-05
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 3e-04
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 4e-04
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 7e-04
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 41/180 (22%)

Query: 212 RKWTPEELELVRKFYEKHGS-DWKTMADTLG-------KHRFHVKDAWRRIKLPNQKKGQ 263
            +WT EE E ++K  E++G+ DWK +A+ L        +HR      W+++  P   KG 
Sbjct: 7   TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHR------WQKVLNPELIKGP 60

Query: 264 WSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQ 323
           W++EE Q++  LV              K+G  R    W  I++ L  R    C  +W++ 
Sbjct: 61  WTKEEDQRVIKLVQ-------------KYGPKR----WSVIAKHLKGRIGKQCRERWHNH 103

Query: 324 LTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWD---NLLEHRSGTFCRKRWNQMVK 380
           L +P V +  W + +D  +  A   L         W     LL  R+    +  WN  ++
Sbjct: 104 L-NPEVKKTSWTEEEDRIIYQAHKRLGNR------WAEIAKLLPGRTDNAIKNHWNSTMR 156
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 100.0
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 100.0
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.97
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.96
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.94
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.94
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.94
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.94
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.91
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.91
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.9
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.89
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.7
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.67
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.48
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.48
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.47
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.46
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.45
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.44
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.42
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.41
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.4
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.4
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.39
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.39
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.38
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.37
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.37
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.35
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.35
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.34
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.34
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.33
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.31
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.29
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.27
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.27
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.26
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.26
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.24
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.23
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.23
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.22
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.2
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.12
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.05
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.05
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.03
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.58
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.57
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.99
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.91
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.91
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.87
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.82
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.69
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.59
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.49
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.41
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.4
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.14
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.1
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.08
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.06
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.03
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 97.98
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 97.97
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 97.91
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.9
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.81
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 97.47
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 96.53
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.39
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.18
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 97.15
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.11
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.11
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.08
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.05
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.03
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 96.86
2crg_A70 Metastasis associated protein MTA3; transcription 96.82
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.55
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 96.49
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 96.46
2crg_A70 Metastasis associated protein MTA3; transcription 96.39
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 96.27
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 95.72
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 94.31
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 95.22
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 94.05
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 92.72
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 91.63
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 89.33
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 87.75
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
Probab=100.00  E-value=3e-36  Score=271.72  Aligned_cols=152  Identities=28%  Similarity=0.464  Sum_probs=106.5

Q ss_pred             CCccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCCC-CCC
Q 014781          134 GFIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERD-ENR  212 (419)
Q Consensus       134 ~~~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~~-~kg  212 (419)
                      |.+..|+||++||++|.++|..|+.                      ..|..||..||+|++.||+.||.++++|. .+|
T Consensus         2 g~~~k~~Wt~eED~~L~~~v~~~g~----------------------~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~   59 (159)
T 1h89_C            2 GHLGKTRWTREEDEKLKKLVEQNGT----------------------DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKG   59 (159)
T ss_dssp             ---------------------------------------------------------------CHHHHHHTTTCTTCCCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC----------------------CCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCC
Confidence            3466789999999999999999863                      47999999999999999999999999984 899


Q ss_pred             CCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhh
Q 014781          213 KWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRT  290 (419)
Q Consensus       213 ~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~  290 (419)
                      +||+|||+.|+.+|..||. +|..||..| |||+.||+.||.+++.|.+++++||+|||..|+++|.             
T Consensus        60 ~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~-------------  126 (159)
T 1h89_C           60 PWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK-------------  126 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHH-------------
T ss_pred             CCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHH-------------
Confidence            9999999999999999997 799999999 8999999999999999999999999999999999998             


Q ss_pred             hcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781          291 KHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT  325 (419)
Q Consensus       291 ~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~  325 (419)
                      .||.     +|..||..||+||+.||++||+.++.
T Consensus       127 ~~g~-----~W~~Ia~~l~gRt~~~~knr~~~~~r  156 (159)
T 1h89_C          127 RLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMR  156 (159)
T ss_dssp             HHCS-----CHHHHHTTSTTCCHHHHHHHHHTTTC
T ss_pred             HHCC-----CHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence            7885     89999999999999999999998884
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 419
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 3e-05
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 2e-04
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 0.002
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 0.002
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 0.002
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 211 NRKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEY 269
           + KWT EE EL  +   K G  W  ++  +  +    VK   R+      K G   +   
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPN 61

Query: 270 QK 271
           QK
Sbjct: 62  QK 63
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.54
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.54
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.53
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.49
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.49
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.43
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.41
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.35
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.35
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.32
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.27
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.23
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.23
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.21
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.18
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.16
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.15
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.13
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.09
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.08
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.02
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.0
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.87
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.78
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.72
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.65
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.6
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.55
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.03
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.68
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.46
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.44
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 95.95
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 95.54
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 95.53
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 95.35
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 95.3
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 94.75
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 93.0
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 88.52
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 83.55
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=1.7e-16  Score=126.81  Aligned_cols=66  Identities=9%  Similarity=0.018  Sum_probs=61.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------HhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHH
Q 014781          211 NRKWTPEELELVRKFYEKHGSD------WKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALV  276 (419)
Q Consensus       211 kg~WT~EEDe~L~~lv~~~G~~------W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV  276 (419)
                      +++||+|||+.|+++|..||..      |..||..| |||+.||+.||.++|.|.++.+.||.+||..|++..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~   73 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDD   73 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHh
Confidence            5899999999999999999963      99999999 899999999999999999999999999999776543
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure