Citrus Sinensis ID: 014826

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MLIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNIHIR
Secondary Structure (PSIPRED)
cEEEcccccccccccccccccEEEcccccccccccHHHHHHHHHcccccEEEEEcccccccHHHHcccccccccccccccccccccccccHHccccccEEccccccccccccHHHHccccccEEEcccccccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEcccccccHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHcccccccccEEEEEEEEccccccccccccccccEEEEEcccccccccccccccccccEEEccccccEEEccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEccccHHHHccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHHccHHHHccHcccEEEEcccccccccccHHHHHHHHHcccccEEEEEcccccHHcccccccccccccEEEcccccccccccHcccccccEEEEEcccccHHcccHHHcccccccEEEEccccccccccccccccccccEEEEEEccccccccccccccHHHHHcHHHHcccccccccccccHHHHHHccccccccccEEEEEcccccccccccccccHHHHHHHccccccccEEEEccccccccccHHHccccccEEEEEcccccccccccccccccccEEEEcccccccEccHHHccccccHHHcccccccccccccccEEEEcccHcHHHccccccccccccccccccccEEEEcccccHccccccccccccccEEEEcccHHHHHHHHHccccccccccccccEEEc
Coil and Loop (DISEMBL)
mlifskgaslpvsTRRVKRMRTLLISasgsdhsslNAEIVEELFREStslraldvsqvslPTEILRNIKKLVHLRYlnlrfpkivklPETLCELynlekldisycfnlkelpeGIGKLINMKHLLNrgtnslrympvgigrltglrtlgefrvsaggdvdgrkaCRLESLKNLEHLQVCGirrlgdvsdvgeakRLELDKKKYLSCLRLRFdkkkeggerrkneDDQLLLEAlrppldlkeLEIQFnrgntvfpSWMTSLTNLKSlglslcenceqlpplgklpslEQLFISYMSSVKRvgdeflgvesdrhdssssslviiafpklKSLRIEGLMEleewdygitrtgnTVINIMPHLSSLVIDscyelkalpdhihqtttlKRLWilncgplgeryrtgegedwpnishipnihir
Flexible Loop (DISEMBL)
mlifskgaslpvstRRVKRMRTLLisasgsdhsslnAEIVEELFREStslraldvsqvslptEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLEslknlehlqvcgirrlgdvsdvgeakrleldkkkylsclrlrfdkkkeggerrkneddqllLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVesdrhdssssslviiafpklKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIhqtttlkrlwilnCGPLGERyrtgegedwpnishipnihir
Low Complexity Region (SEG)
MLIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIgrltglrtlgEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDkkkeggerrkNEDDQlllealrppldlKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDsssssLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNIHIR
Disordered region (IsUnstruct)
**************************************IVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF*****************LLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGV***********LVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISH*******
Disordered Region (DISOPRED)
MLI*S**ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKE*******EDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDR******SLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNIHIR
Disordered Region (DISEMBL)
MLIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKK*********DDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGV**********SLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNIHIR
Disordered Region (DISPRO)
MLIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNIHIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNIHIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	418	2.2.26 [Sep-21-2011]
Q9LRR4	1054	Putative disease resistan	yes	no	0.851	0.337	0.340	1e-37
Q9LRR5	1424	Putative disease resistan	no	no	0.803	0.235	0.327	1e-28
Q7XBQ9	970	Disease resistance protei	N/A	no	0.822	0.354	0.293	1e-28
Q7XA40	992	Putative disease resistan	N/A	no	0.715	0.301	0.354	2e-27
Q7XA39	988	Putative disease resistan	N/A	no	0.739	0.312	0.338	7e-27
Q7XA42	979	Putative disease resistan	N/A	no	0.751	0.320	0.356	6e-26
Q38834	852	Disease resistance RPP13-	no	no	0.531	0.260	0.299	3e-12
Q8W3K3	910	Putative disease resistan	no	no	0.753	0.346	0.271	3e-12
Q9FJK8	908	Probable disease resistan	no	no	0.803	0.370	0.254	9e-08
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.789	0.366	0.263	3e-07

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/394 (34%), Positives = 201/394 (51%), Gaps = 38/394 (9%)

Query: 15  RRVKRMRTLL-ISASGSDHSS-LNAEIVEELFRESTSLRALDVSQ---VSLPTEILRNIK 69
           R VK +RT L +S + S  S  L+  + E+L    T LR L +S      LP +  +NI 
Sbjct: 543 REVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNIS 602

Query: 70  KLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT 129
              H R+L+L   ++ KLP++LC +YNL+ L +SYC +LKELP  I  LIN+++L   GT
Sbjct: 603 ---HARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT 659

Query: 130 NSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLE-HLQVCGIRRLGDVS 188
             LR MP   GRL  L+TL  F VSA    DG +   L  L +L   L++  ++R+ DV+
Sbjct: 660 K-LRQMPRRFGRLKSLQTLTTFFVSAS---DGSRISELGGLHDLHGKLKIVELQRVVDVA 715

Query: 189 DVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKN----EDDQLLLEALRPPLDLKELEI 244
           D  EA    L+ KK+L  +   +       E   N    +++  + E LRP   +++L I
Sbjct: 716 DAAEAN---LNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAI 772

Query: 245 QFNRGNTVFPSWMT--SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGD 302
           +  +G   FP W++  S + +  + L  C+ C  LP LG+LP L++L IS M  ++ +G 
Sbjct: 773 ERYKGRR-FPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGR 831

Query: 303 EFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEW-DYGITRTGNTVINIMPHLSS 361
           +F        D          F  L++LR + L + +EW D  +TR      ++ P L  
Sbjct: 832 KFYF-----SDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-----DLFPSLKK 881

Query: 362 LVIDSCYELKA-LPDHIHQTTTLKRLWILNCGPL 394
           L I  C EL   LP  +    +L  L I  CG L
Sbjct: 882 LFILRCPELTGTLPTFL---PSLISLHIYKCGLL 912

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 181/376 (48%), Gaps = 40/376 (10%)

Query: 20  MRTLLISASGSDHSSLN--AEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYL 77
           +RT+L   S +   SL    +++  L    + LR L +S   + T + +++K L  LRYL
Sbjct: 543 LRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQI-TNLPKSLKGLKLLRYL 601

Query: 78  NLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPV 137
           +L   KI +LPE +C L NL+ L +S C +L  LP+ I +LIN++ LL+     L  MP 
Sbjct: 602 DLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLR-LLDLVGTPLVEMPP 660

Query: 138 GIGRLTGLRTLGEF---RVSAGGDVDGRKACRLESLKNLEHLQ-VCGIRRLGDVSDVGEA 193
           GI +L  L+ L  F   R+S  G         L  LK L HL+    I  L +V+   EA
Sbjct: 661 GIKKLRSLQKLSNFVIGRLSGAG---------LHELKELSHLRGTLRISELQNVAFASEA 711

Query: 194 KRLELDKKKYLSCLRLRFDKKKEG---GERRKNEDDQL-LLEALRPPLDLKELEIQFNRG 249
           K   L +K +L  L L++  K  G   G       DQ  +L  L P   LK   I+  +G
Sbjct: 712 KDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQG 771

Query: 250 NTVFPSWM--TSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVG-DEFLG 306
              FP W+  +S   + S+ LS C  C  LPP+G+LPSL+ L I   + +++VG D F G
Sbjct: 772 G-AFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFG 830

Query: 307 VESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDS 366
             + R          + F  L+ L+  G+   +EW       G     I P L  L+I  
Sbjct: 831 ENNSRG---------VPFQSLQILKFYGMPRWDEWICPELEDG-----IFPCLQKLIIQR 876

Query: 367 CYEL-KALPDHIHQTT 381
           C  L K  P+ +  +T
Sbjct: 877 CPSLRKKFPEGLPSST 892

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 189/467 (40%), Gaps = 123/467 (26%)

Query: 49  SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNL 108
           SLR L++   +   ++  +I  LVHLRYLNL    +  LP+ LC+L NL+ LD+ YC  L
Sbjct: 527 SLRVLNLGDSTF-NKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKL 585

Query: 109 KELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLE 168
             LP+   KL ++++LL  G+ SL  MP  IG LT L+TLG+F V        +K  +L 
Sbjct: 586 CCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGR------KKGYQLG 639

Query: 169 SLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQL 228
            L NL       I  L  V +  +AK   L  K  L  L + ++     G      ++  
Sbjct: 640 ELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNN---FGPHIYESEEVK 696

Query: 229 LLEALRPPLDLKELEIQFNRGNTVFPSWM--TSLTNLKSLGLSLCENCEQLPPLGKLPSL 286
           +LEAL+P  +L  L+I   RG    P WM  + L N+ S+ +S   NC  LPP G LP L
Sbjct: 697 VLEALKPHSNLTSLKIYGFRG-IHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCL 755

Query: 287 EQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYG-- 344
           E L + + S+     +E   V+ D H    +    I FP L+ L I        WD+G  
Sbjct: 756 ESLELHWGSADVEYVEE---VDIDVHSGFPTR---IRFPSLRKLDI--------WDFGSL 801

Query: 345 ---ITRTG----------------------------------NTVINIMP--------HL 359
              + + G                                  N V    P        +L
Sbjct: 802 KGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANL 861

Query: 360 SSLVIDSCYELKALPDHIHQTTTLKRLWI------------------------------L 389
             L I  C  LK LP  +     LK L I                              L
Sbjct: 862 KYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNML 921

Query: 390 NCGPLGERYRT-------------------GEGEDWPNISHIPNIHI 417
            C P G ++ T                   G GEDW  ISHIPN++I
Sbjct: 922 KCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNI 968

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 164/327 (50%), Gaps = 28/327 (8%)

Query: 43  LFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDI 102
           LF+   SLR L++S      ++  ++  LVHLRYL+L   KI  LP+ LC+L NL+ LD+
Sbjct: 530 LFKRFVSLRVLNLSNSEF-EQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDL 588

Query: 103 SYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGR 162
             C +L  LP+   KL ++++L+      L  MP  IG LT L+TLG F V        R
Sbjct: 589 YNCQSLSCLPKQTSKLCSLRNLV-LDHCPLTSMPPRIGLLTCLKTLGYFVVGE------R 641

Query: 163 KACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRK 222
           K  +L  L+NL       I  L  V +  EAK   L  K  L  L + +D+       R 
Sbjct: 642 KGYQLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDRP-----NRY 696

Query: 223 NEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWM--TSLTNLKSLGLSLCENCEQLPPL 280
             ++  +LEAL+P  +LK LEI  +      P WM  + L N+ S+ +S CENC  LPP 
Sbjct: 697 ESEEVKVLEALKPHPNLKYLEI-IDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPF 755

Query: 281 GKLPSLEQLFISYMS-SVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSL-RIEGLME- 337
           G+LP LE L +   S  V+ V D   G  + R   S   L I  F  LK L R++G  + 
Sbjct: 756 GELPCLESLELQDGSVEVEYVEDS--GFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQF 813

Query: 338 --LEEWDYGITRTGNTVINIMPHLSSL 362
             LEE      +  +  + + P LSS+
Sbjct: 814 PVLEE-----MKISDCPMFVFPTLSSV 835

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  122 bits (305), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 170/349 (48%), Gaps = 40/349 (11%)

Query: 3   IFSKGASL----PVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQV 58
           +FS  AS      ++ +  K   ++  +A  S +S         L ++  SLR L++S  
Sbjct: 485 LFSASASCGNIREINVKDYKHTVSIGFAAVVSSYSP-------SLLKKFVSLRVLNLSYS 537

Query: 59  SLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKL 118
            L  ++  +I  L+HLRYL+L       LPE LC+L NL+ LD+  C++L  LP+   KL
Sbjct: 538 KL-EQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKL 596

Query: 119 INMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQV 178
            +++HL+  G   L   P  IG LT L+TLG F V +      +K  +L  LKNL     
Sbjct: 597 SSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFIVGS------KKGYQLGELKNLNLCGS 649

Query: 179 CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLD 238
             I  L  V +  +A+   L  K  L  L + +D     G  R    +  +LEAL+P  +
Sbjct: 650 ISITHLERVKNDTDAEA-NLSAKANLQSLSMSWDND---GPNRYESKEVKVLEALKPHPN 705

Query: 239 LKELEIQFNRGNTVFPSWM--TSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSS 296
           LK LEI    G   FPSW+  + L  + S+ +  C+NC  LPP G+LP LE L +   S+
Sbjct: 706 LKYLEI-IAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFGELPCLENLELQNGSA 764

Query: 297 VKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRI------EGLMELE 339
                 E   VE D  D  S      +FP LK LRI      +GLM+ E
Sbjct: 765 ------EVEYVEED--DVHSRFSTRRSFPSLKKLRIWFFRSLKGLMKEE 805

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  119 bits (297), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 168/342 (49%), Gaps = 28/342 (8%)

Query: 2   LIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEE----LFRESTSLRALDVSQ 57
           LI     SL  +      +R +  +  G   S   AE+V      L ++  SLR L++  
Sbjct: 475 LIHDLATSLFSANTSSSNIREINANYDGYMMSIGFAEVVSSYSPSLLQKFVSLRVLNLRN 534

Query: 58  VSLPTEILRNIKKLVHLRYLNLRFP-KIVKLPETLCELYNLEKLDISYCFNLKELPEGIG 116
            +L  ++  +I  LVHLRYL+L    +I  LP+ LC+L NL+ LD+ YC +L  LP+   
Sbjct: 535 SNL-NQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTS 593

Query: 117 KLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHL 176
           KL ++++LL  G  SL   P  IG LT L++L  F +        RK  +L  LKNL   
Sbjct: 594 KLGSLRNLLLDGC-SLTSTPPRIGLLTCLKSLSCFVIGK------RKGHQLGELKNLNLY 646

Query: 177 QVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPP 236
               I +L  V    +AK   L  K  L  L L +D   +G  R  +E    +LEAL+P 
Sbjct: 647 GSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWD--LDGKHRYDSE----VLEALKPH 700

Query: 237 LDLKELEIQFNRGNTVFPSWMTS--LTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYM 294
            +LK LEI    G    P WM    L N+ S+ +  CENC  LPP G+LP LE L +   
Sbjct: 701 SNLKYLEIN-GFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLELHTG 759

Query: 295 SS-VKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKS-LRIEG 334
           S+ V+ V D    V   R   S   LVI  F  LK  L++EG
Sbjct: 760 SADVEYVED---NVHPGRF-PSLRKLVIWDFSNLKGLLKMEG 797

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 25/247 (10%)

Query: 19  RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLP---TEILRNIKKLVHLR 75
           ++R ++ +    + + LN+++ ++ F +   LR LD+S+       +EIL  I  L HL 
Sbjct: 531 KLRGVVSTTKTGEVNKLNSDLAKK-FTDCKYLRVLDISKSIFDAPLSEILDEIASLQHLA 589

Query: 76  YLNLRFPK-IVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRY 134
            L+L     +++ P ++ +L+NL+ LD SYC NLK+L   I     +  L      SL  
Sbjct: 590 CLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLEC 649

Query: 135 MPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLG-DVSDVGEA 193
            P GIG L  L  L  F+ +   +      C+L  +KNL +L     R+LG  ++   + 
Sbjct: 650 FPKGIGSLVKLEVLLGFKPARSNN-----GCKLSEVKNLTNL-----RKLGLSLTRGDQI 699

Query: 194 KRLELDKKKYLSCL-RLRFDKKKEGGERRKNEDDQLL-LEALRPPLDLKELEIQFNRGNT 251
           +  ELD    LS L  +  +     G      DD +  ++AL PP  L EL +QF  G +
Sbjct: 700 EEEELDSLINLSKLMSISINCYDSYG------DDLITKIDALTPPHQLHELSLQFYPGKS 753

Query: 252 VFPSWMT 258
             PSW++
Sbjct: 754 S-PSWLS 759

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 161/372 (43%), Gaps = 57/372 (15%)

Query: 50  LRALDVSQVSLPTEIL-RNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNL 108
           LR LD+ +       L   I KL+HLRYLNL   ++ +LP +L  L  L  LDI+ C   
Sbjct: 583 LRVLDLYKAKFEGRNLPSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLLIYLDINVCTKS 642

Query: 109 KELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLE 168
             +P  +  +  +++ L    N+ + + +G+  L  L TL  F               LE
Sbjct: 643 LFVPNCLMGMHELRY-LRLPFNTSKEIKLGLCNLVNLETLENFSTENSS---------LE 692

Query: 169 SLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKN-EDDQ 227
            L+ +  L+   I     +S   E     +   ++L  L +R     +G  + K   +D 
Sbjct: 693 DLRGMVSLRTLTIGLFKHISK--ETLFASILGMRHLENLSIR---TPDGSSKFKRIMEDG 747

Query: 228 LLLEALRPPLDLKELEIQFNR----GNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKL 283
           ++L+A+     LK+L ++           FPS +TS++     G  L E+         L
Sbjct: 748 IVLDAIH----LKQLNLRLYMPKLPDEQHFPSHLTSIS---LDGCCLVED--------PL 792

Query: 284 PSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDY 343
           P LE+L       +K V  +F      R  SS        FP+L  L I GL E EEW  
Sbjct: 793 PILEKLL-----ELKEVRLDFRAFCGKRMVSSDG-----GFPQLHRLYIWGLAEWEEW-- 840

Query: 344 GITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEG 403
            I   G+     MP L +L I +C +LK LPD +    ++K    L+     +   +  G
Sbjct: 841 -IVEEGS-----MPRLHTLTIWNCQKLKQLPDGLRFIYSIKD---LDMDKKWKEILSEGG 891

Query: 404 EDWPNISHIPNI 415
           E++  + HIP++
Sbjct: 892 EEYYKVQHIPSV 903

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 173/448 (38%), Gaps = 112/448 (25%)

Query: 3   IFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPT 62
           I S  A   +  R   ++R+L++S    D    +A +    F   T LR LD+S+V    
Sbjct: 535 IHSGKAFHILGHRNNPKVRSLIVSRFEEDFWIRSASV----FHNLTLLRVLDLSRVKFEG 590

Query: 63  -EILRNIKKLVHLRYLNLRFPKIVKLPETL------------------CELYNL--EKLD 101
            ++  +I  L+HLRYL+L    +  LP T+                    + N+  E L+
Sbjct: 591 GKLPSSIGGLIHLRYLSLYGAVVSHLPSTMRNLKLLLFLNLRVDNKEPIHVPNVLKEMLE 650

Query: 102 ISYCFNLKELPEG----IGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGG 157
           + Y    +E+ +     +G L+N+++L    T         + R+T LR LG        
Sbjct: 651 LRYLSLPQEMDDKTKLELGDLVNLEYLWYFSTQHSSV--TDLLRMTKLRNLG-------- 700

Query: 158 DVDGRKACRLESL-------KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLR 210
            V   + C  E+L       +NLE L V     +  V  +GE     LD   +L  L L 
Sbjct: 701 -VSLSERCNFETLSSSLRELRNLEMLNVLFSPEIVMVDHMGE---FVLDHFIHLKQLGLA 756

Query: 211 FDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSL 270
               K   + +                               FP       +L  + L  
Sbjct: 757 VRMSKIPDQHQ-------------------------------FPP------HLAHIHLVH 779

Query: 271 CENCEQ-LPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKS 329
           C   E  +P L KL  L+ + +SY +        F+G    R    S       FP+L +
Sbjct: 780 CVMKEDPMPILEKLLHLKSVALSYGA--------FIG----RRVVCSKG----GFPQLCA 823

Query: 330 LRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWIL 389
           L I G  ELEEW   I   G+     MP L +L I  C +LK LPD +   T+LK L I 
Sbjct: 824 LGISGESELEEW---IVEEGS-----MPCLRTLTIHDCEKLKELPDGLKYITSLKELKIR 875

Query: 390 NCGPLGERYRTGEGEDWPNISHIPNIHI 417
                 +      GED+  + HIP++  
Sbjct: 876 EMKREWKEKLVPGGEDYYKVQHIPDVQF 903

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 174/421 (41%), Gaps = 91/421 (21%)

Query: 18  KRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL-RNIKKLVHLRY 76
           K++R+LL+     D    +A      F+    LR LD+S V      L  +I  L+HLR+
Sbjct: 542 KKVRSLLVLGLKEDLWIQSAS----RFQSLPLLRVLDLSSVKFEGGKLPSSIGGLIHLRF 597

Query: 77  LNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMP 136
           L+L    +  LP T+  L  +  L++            IG  +++ ++L      LRY+ 
Sbjct: 598 LSLHQAVVSHLPSTIRNLKLMLYLNLHV---------AIGVPVHVPNVLKEMLE-LRYLS 647

Query: 137 VGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRL 196
           + +                  D+  +    L  L NLE+L  C   +   V+D+      
Sbjct: 648 LPL------------------DMHDKTKLELGDLVNLEYLW-CFSTQHSSVTDL------ 682

Query: 197 ELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFP-- 254
                  L   +LRF       ER   E+   L  +LR    L+ L   ++R   +    
Sbjct: 683 -------LRMTKLRF-FGVSFSERCTFEN---LSSSLRQFRKLETLSFIYSRKTYMVDYV 731

Query: 255 -SWMTSLTNLK--SLGLSLCE--NCEQLPPL-------------GKLPSLEQLFISYMSS 296
             ++    +LK  SLG+ L +  +  QLPP                +P LE+L   ++ S
Sbjct: 732 GEFVLDFIHLKKLSLGVHLSKIPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLL--HLKS 789

Query: 297 VKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIM 356
           V+     F+G    R    S       FP+L++L+I    ELEEW   I   G+     M
Sbjct: 790 VELRRKAFIG----RRMVCSKG----GFPQLRALQISEQSELEEW---IVEEGS-----M 833

Query: 357 PHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNIH 416
           P L  L+I SC +L+ LPD +   T+LK L I   G   E      GED+  + HIP++ 
Sbjct: 834 PCLRDLIIHSCEKLEELPDGLKYVTSLKELKIE--GMKREWKEKLVGEDYYKVQHIPDVQ 891

Query: 417 I 417
            
Sbjct: 892 F 892

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
255549784	786	leucine-rich repeat containing protein,	0.949	0.505	0.451	4e-74
224122700	799	nbs-lrr resistance protein [Populus tric	0.942	0.493	0.428	3e-68
224122696	906	cc-nbs-lrr resistance protein [Populus t	0.949	0.438	0.414	3e-67
255558779	387	hypothetical protein RCOM_1397400 [Ricin	0.909	0.981	0.440	7e-67
147825450	927	hypothetical protein VITISV_000086 [Viti	0.889	0.401	0.419	2e-64
224110248	888	cc-nbs-lrr resistance protein [Populus t	0.944	0.444	0.406	3e-64
224101679	788	nbs-lrr resistance protein [Populus tric	0.937	0.497	0.403	1e-63
255558785	661	leucine-rich repeat containing protein,	0.820	0.518	0.452	2e-61
359482792	922	PREDICTED: putative disease resistance p	0.873	0.395	0.416	2e-61
224143886	541	predicted protein [Populus trichocarpa]	0.949	0.733	0.405	9e-61

>gi|255549784|ref|XP_002515943.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223544848|gb|EEF46363.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 191/423 (45%), Positives = 252/423 (59%), Gaps = 26/423 (6%)

Query: 2   LIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLP 61
           ++  K  S P S  R+K +RTL +   G+  S + A +   LF   T LR+L++S  +L 
Sbjct: 342 VMLGKDVSFPSSIYRLKDLRTLWVQCKGN--SKVGAAL-SNLFGRLTCLRSLNLSNCNL- 397

Query: 62  TEILRNIKKLVHLRYLNLRFPKIVK-LPETLCELYNLEKLDISYCFNLKELPEGIGKLIN 120
            EI  +I KL+HLR ++L + K +K LPE LCEL NL+ L++  CF+L +LP G+ KLIN
Sbjct: 398 AEIPSSICKLIHLRQIDLSYNKDLKGLPEALCELCNLQTLNMDGCFSLVKLPRGLEKLIN 457

Query: 121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVC- 179
           ++HL N G   +  +P GI +LT LR+L  F +      + ++AC L  LKNL HLQ C 
Sbjct: 458 LRHLHNGGFEGV--LPKGISKLTCLRSLNRFSIGQ----NNQEACNLGDLKNLNHLQGCL 511

Query: 180 GIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDL 239
            I  L  V+DVGEAK+ EL KK  ++ L LRF K     E RK+ DD++LL AL P   +
Sbjct: 512 CIMGLEIVADVGEAKQAELRKKTEVTRLELRFGKGD--AEWRKHHDDEILL-ALEPSPYV 568

Query: 240 KELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKR 299
           +EL I   +G TVFPSWM  L+NLK++ L+ C+ CE LPPLGKLP LE L I  M  V++
Sbjct: 569 EELGIYDYQGRTVFPSWMIFLSNLKTVILTNCKTCEHLPPLGKLPFLENLRIWGMDGVQK 628

Query: 300 VGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGN----TVINI 355
            G EFLG+ES    SS      IAFPKL +LR   +   E W     R G+    T I I
Sbjct: 629 AGLEFLGLESSSSSSSG-----IAFPKLINLRFMRMRNWEVWADDFIRMGDEEDSTKITI 683

Query: 356 MPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP-LGERYRTGEGEDWPNISHIPN 414
           MP L SL    C +LKA+PD   +  TL+ L  L C P L   Y+ G G+DW  ISHIPN
Sbjct: 684 MPQLRSLSFAWCSKLKAVPDQFLRKATLQEL-TLTCSPELKRAYQKGIGQDWHKISHIPN 742

Query: 415 IHI 417
           I I
Sbjct: 743 IKI 745

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122700|ref|XP_002318904.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222859577|gb|EEE97124.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 183/427 (42%), Positives = 251/427 (58%), Gaps = 33/427 (7%)

Query: 2   LIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLP 61
           ++ S+  S PVS  + K +R+LLI    +   SL A +  +LF++ T +R+LD+S+ S+ 
Sbjct: 393 MMLSEETSFPVSIHKAKGLRSLLID---TRDPSLGAAL-PDLFKQLTCIRSLDLSKSSI- 447

Query: 62  TEILRNIKKLVHLRYLNL-RFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLIN 120
            EI   + KL+HLR+LNL    ++  LPET+C+L NL+ LD+++C +LK+LP  IGKLI 
Sbjct: 448 KEIPNEVGKLIHLRHLNLASCGELESLPETMCDLCNLQSLDVTWCGSLKKLPNAIGKLIK 507

Query: 121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHL-QVC 179
           ++HL   G+  + ++P GI R+  LRTL  F V  GG+ +  KA  L  LKNL H+    
Sbjct: 508 LRHLRINGSG-VDFIPKGIERIACLRTLNVFIVCGGGENES-KAANLRELKNLNHIGGSL 565

Query: 180 GIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDL 239
           GIR L D SD  EA   +L  KK L  L L FD  +E G         +L+EALRPP DL
Sbjct: 566 GIRNLQDASDAAEA---QLKNKKRLLRLELDFDYNQESG---------ILIEALRPPSDL 613

Query: 240 KELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKR 299
           K L I    G    PSWM +LT L+ L LS C   E + PLG+LP+LE L +  +  V+R
Sbjct: 614 KYLTIS-RYGGLELPSWMMTLTRLQELILSDCTKLEVMRPLGRLPNLESLVLRSL-KVRR 671

Query: 300 VGDEFLGVESDRHDSSSSSLV--IIAFPKLKSLRIEGLMELEEWDYGITRTG------NT 351
           +   FLG+E D + S +   +  + AFPKLK+L I  L E+EEWD    R G       +
Sbjct: 672 LDAGFLGIEKDENASINEGEIARVTAFPKLKTLWIGNLEEVEEWDGIERRVGEEDVNTTS 731

Query: 352 VINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGE-GEDWPNIS 410
           +I+IMP L  L I +C  L+ALPD++     L+ L I  C  L +RY   E GEDW  IS
Sbjct: 732 IISIMPQLRWLTILNCPLLRALPDYV-LAAPLRVLDIWGCPILRKRYGKEEMGEDWQKIS 790

Query: 411 HIPNIHI 417
           HIPNI I
Sbjct: 791 HIPNISI 797

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 179/432 (41%), Positives = 256/432 (59%), Gaps = 35/432 (8%)

Query: 2   LIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLP 61
           ++     S PVS  + K +R+LLI    +   SL A +  +LF++ T +R+L++S+  + 
Sbjct: 491 MMLPNETSFPVSIHKAKGLRSLLID---TRDPSLGAAL-PDLFKQLTCIRSLNLSRSQI- 545

Query: 62  TEILRNIKKLVHLRYLNLRF-PKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLIN 120
            EI   + KL+HLR+LNL +  ++  LPET+C+L NL+ LD+++C +LKELP+ IGKLI 
Sbjct: 546 KEIPNEVGKLIHLRHLNLAWCVELESLPETICDLCNLQSLDVTWCRSLKELPKAIGKLIK 605

Query: 121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH----L 176
           ++HL    ++ + ++P GI R+T LRTL +F V  GG+ +  KA  L  LKNL H    L
Sbjct: 606 LRHLWI-DSSGVAFIPKGIERITCLRTLDKFTVCGGGENES-KAANLRELKNLNHIGGSL 663

Query: 177 QVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF---DKKKEGGERRKNEDDQLLLEAL 233
           ++  +R + +V DV +A    L  KK L CL   F   D      E  ++E    L+E L
Sbjct: 664 RIDKVRDIENVRDVVDA----LLNKKRLLCLEWNFKGVDSILVKTELPEHEGS--LIEVL 717

Query: 234 RPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISY 293
           RPP DL+ L I+   G    P+WM +LT L+ L L  CEN E LPPLG+LP+LE+L + +
Sbjct: 718 RPPSDLENLTIR-GYGGLDLPNWMMTLTRLRMLSLGPCENVEVLPPLGRLPNLERLLLFF 776

Query: 294 MSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITR------ 347
           +  V+R+   FLGVE D ++   +   + AFPKLKS RI  L E+EEWD GI R      
Sbjct: 777 L-KVRRLDAGFLGVEKDENEGEIAR--VTAFPKLKSFRIRYLEEIEEWD-GIERRVGEED 832

Query: 348 -TGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGE-GED 405
               ++I+IMP L  L I  C  L+ALPD++     L+ L I+ C  L  RY   E GED
Sbjct: 833 ANTTSIISIMPQLQYLGIRKCPLLRALPDYV-LAAPLQELEIMGCPNLTNRYGEEEMGED 891

Query: 406 WPNISHIPNIHI 417
           W  ISHIPNI+ 
Sbjct: 892 WQKISHIPNIYF 903

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558779|ref|XP_002520413.1| hypothetical protein RCOM_1397400 [Ricinus communis] gi|223540398|gb|EEF41968.1| hypothetical protein RCOM_1397400 [Ricinus communis]

 Score =  260 bits (665), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 179/406 (44%), Positives = 242/406 (59%), Gaps = 26/406 (6%)

Query: 3   IFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPT 62
           +  K  S P S  R+K +RTL +   G  +S + A +   LF   T LR+L++S  +L  
Sbjct: 1   MLGKEVSFPSSIYRLKDLRTLWVQCKG--NSKVGAAL-SNLFGRLTCLRSLNLSNCNL-A 56

Query: 63  EILRNIKKLVHLRYLNLRFPKIVK-LPETLCELYNLEKLDISYCFNLKELPEGIGKLINM 121
           EI  +I+KL+HLR ++L + K +K LPE LCEL NL+ L++  CF+L +LP G+ KLIN+
Sbjct: 57  EIPSSIRKLIHLRQIDLSYNKDLKGLPEALCELCNLQTLNMDGCFSLVKLPRGVEKLINL 116

Query: 122 KHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVC-G 180
           +HL N G   +  +P GI +LT LR+L  F +      D ++AC L  LKNL HLQ C  
Sbjct: 117 RHLHNGGFEGV--LPKGISKLTCLRSLNRFSIGQ----DNQEACNLGDLKNLNHLQGCVC 170

Query: 181 IRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLK 240
           I RL  V+DVGEAK++EL KK  ++ L LRF K     E RK+ DD+LLL AL P   ++
Sbjct: 171 IMRLEIVADVGEAKQVELRKKTEVTRLELRFGKGD--AEWRKHHDDELLL-ALEPSPYVE 227

Query: 241 ELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRV 300
           EL I   +G TVFPSWM  L+N K++ L+ C+  E LPPLGKLP LE L I  M  V++V
Sbjct: 228 ELGIYDYQGRTVFPSWMIFLSNFKTVILTTCKTYEHLPPLGKLPFLENLRIWGMDGVQKV 287

Query: 301 GDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGN----TVINIM 356
           G +FLG+ES    SS      +AFPKL +LR   +   E W     + G+    T I IM
Sbjct: 288 GLKFLGLESSSSSSSG-----VAFPKLINLRFMRMRNWEVWADDFIKMGDEEDSTKITIM 342

Query: 357 PHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP-LGERYRTG 401
           P L SL    C +LKA+PD + +  TL+ L  L C P L   Y+ G
Sbjct: 343 PQLRSLSFAWCSKLKAVPDQLLRKATLQEL-TLTCSPDLKRAYQRG 387

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera]

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 171/408 (41%), Positives = 240/408 (58%), Gaps = 36/408 (8%)

Query: 12  VSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKL 71
            ST  +K + TLL  A      S   E +  L R  T LRALD+S+  L  E+ + + KL
Sbjct: 547 ASTCNMKNLHTLL--AKEEFBISXVLEALXNLLRHLTCLRALDLSRNRLIEELPKEVGKL 604

Query: 72  VHLRYLNLRFP-KIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTN 130
           +HLRYLNL    ++ +LPET+C+LYNL+ L+I  C +L++LP+ +GKLIN++HL N  T 
Sbjct: 605 IHLRYLNLSLCYRLRELPETICDLYNLQTLNIEGCSSLQKLPQAMGKLINLRHLENCNTG 664

Query: 131 SLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQ-VCGIRRLGDVSD 189
           SL+ +P GIGRL+ L+TL  F VS+ G+      C++  L+NL +L+    I+RL +V D
Sbjct: 665 SLKGLPKGIGRLSSLQTLDVFIVSSHGN----DECQIGDLRNLNNLRGGLSIQRLDEVKD 720

Query: 190 VGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRG 249
            GEA++ EL  + +   L L F KK         E  + + EAL+P  +LK L+I FN G
Sbjct: 721 AGEAEKAELKNRVHFQYLTLEFGKK---------EGTKGVAEALQPHPNLKSLDI-FNYG 770

Query: 250 NTVFPSWM--TSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGV 307
           +  +P+WM  +SL  LK L +  C  C  LP LG+LP LE+L I  M  VK +G EFLG 
Sbjct: 771 DREWPNWMMGSSLAQLKILEIGNCRRCPCLPLLGQLPVLEKLDIWGMDGVKYIGSEFLG- 829

Query: 308 ESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSC 367
                   SSS V   FPKLK L I  + EL++W+      G    +IMP L+ L  + C
Sbjct: 830 --------SSSTV---FPKLKELNISRMDELKQWEI----KGKEERSIMPCLNHLRTEFC 874

Query: 368 YELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNI 415
            +L+ LPDH+ Q T L++L+I++   L  RYR   GED   ISHIP +
Sbjct: 875 PKLEGLPDHVLQRTPLQKLYIIDSPILERRYRKDIGEDRHKISHIPEV 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110248|ref|XP_002333128.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834939|gb|EEE73388.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 175/430 (40%), Positives = 249/430 (57%), Gaps = 35/430 (8%)

Query: 2   LIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLP 61
           ++ S+  S PVS  + K +R+LLI        +     + +LF++ T +R+LD+S  S+ 
Sbjct: 478 MMVSEETSFPVSIHKAKGLRSLLIDTRDPSFGA----ALPDLFKQLTCIRSLDLSASSIK 533

Query: 62  TEILRNIKKLVHLRYLNL-RFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLIN 120
            EI   + KL+HLR++NL R  ++  LPET+C+L NL+ LD+++C +LKELP  IGKLI 
Sbjct: 534 -EIPNEVGKLIHLRHVNLARCGELESLPETMCDLCNLQSLDVTWCRSLKELPNAIGKLIK 592

Query: 121 MKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHL-QV 178
           ++HL + R  + + ++P GI R+T LRTL  F+V  GG+ +  KA  L  LKNL H+   
Sbjct: 593 LRHLRIYR--SGVDFIPKGIERITCLRTLDVFKVCGGGENES-KAANLRELKNLNHIGGS 649

Query: 179 CGIRRL-GDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPL 237
             IR L G + D  +A   +L  KK L  L L FD  +E G         +L+EAL+PP 
Sbjct: 650 FSIRNLGGGIEDASDAAEAQLKNKKRLLRLELGFDYNQENG---------ILIEALQPPS 700

Query: 238 DLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSV 297
           DL+ L I  + G    P WM +LT L+ L L  C N E L PLG LP+LE L +S +  V
Sbjct: 701 DLECLTIS-SYGGLDLPHWMMTLTRLQELRLDDCTNLEVLRPLGGLPNLEILVLSSL-KV 758

Query: 298 KRVGDEFLGVESDRHDSSSSSLV--IIAFPKLKSLRIEGLMELEEWDYGITR-------T 348
           +R+   FLG+E D + S +   +  + AFPKLK L    L+E+EEW+ GI R        
Sbjct: 759 RRLDAGFLGIEKDENASINEGEIARVTAFPKLKRLDFRHLLEVEEWE-GIERRVGEEDVN 817

Query: 349 GNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGE-GEDWP 407
             ++I+IMP L  L I +C  L+ALPD++     L+ L I  C  L +RY   E GEDW 
Sbjct: 818 TTSIISIMPQLQYLRIINCPLLRALPDYV-LAAPLQELDIRWCTILRKRYGKEEMGEDWQ 876

Query: 408 NISHIPNIHI 417
            ISHIPN + 
Sbjct: 877 KISHIPNSYF 886

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101679|ref|XP_002334255.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222870330|gb|EEF07461.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 175/434 (40%), Positives = 251/434 (57%), Gaps = 42/434 (9%)

Query: 6   KGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL 65
           K  S P +   +K++R+L++    S   S+NA +   L    + LR L +S+  +  E+ 
Sbjct: 374 KTYSFPETIHSLKKLRSLIVDGYPS---SMNATL-PNLIANLSCLRTLRLSRCGI-EEVP 428

Query: 66  RNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLL 125
            NI KL+HLR+++L    I +LPE +CELYN+  LD+S C  L+ LP+ + KL+ ++HL 
Sbjct: 429 SNIGKLIHLRHVDLSGNLIRELPEEMCELYNMLTLDVSDCEKLERLPDNMEKLVKLRHL- 487

Query: 126 NRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQ-VCGIRRL 184
                 L     G+  L+ LR L EF VS  G+V          L+NL HLQ    IR L
Sbjct: 488 --SVGRLFVKMRGVEGLSSLRELDEFHVSGSGEVSN-----FGDLRNLNHLQGSLKIRWL 540

Query: 185 GDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEI 244
           GDV D  E K+  L  K++L+CLRL F+ + + G    +E    +LEAL PP +L+ LEI
Sbjct: 541 GDVKDPDEVKKALLKSKEHLTCLRLWFESRIDKGTIHDDE----VLEALEPPPNLEFLEI 596

Query: 245 QFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEF 304
           ++ RG  + P + + +  L+ + LS     E LPPLGKLPSLE+L IS+M  VK++GDEF
Sbjct: 597 RYYRG--IDPVFSSCINKLRVVELSEWGKIENLPPLGKLPSLEELTISWMECVKKMGDEF 654

Query: 305 LGVESDRHD------------SSSSSLVIIAFPKLKSLRIEGLMELEEWDYGIT------ 346
           LG+E DR D            S S S +I AFPKLK L I  + + EEW+ G        
Sbjct: 655 LGLEVDREDDEDSEISIGEMTSPSPSNIITAFPKLKGLTISDMRKWEEWEGGEGGRWRRG 714

Query: 347 ---RTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEG 403
              +T  ++  IMP L SL+I  C +LKALPD++ Q+TT+++L I +   L E+++ G G
Sbjct: 715 NEDKTNISISIIMPSLRSLLILKCPKLKALPDYVLQSTTIEKLLIKSSSILEEQFKAG-G 773

Query: 404 EDWPNISHIPNIHI 417
           E WPN SHIP+I I
Sbjct: 774 EGWPNDSHIPSITI 787

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558785|ref|XP_002520416.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223540401|gb|EEF41971.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/367 (45%), Positives = 221/367 (60%), Gaps = 24/367 (6%)

Query: 2   LIFSKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLP 61
           ++  K  S P S  R+K +RTL +   G  +S + A +   LF   T LR+L++S  +L 
Sbjct: 313 VMLGKDVSFPSSIYRLKDLRTLWVQCKG--NSKVGAAL-SNLFGRLTCLRSLNLSNCNL- 368

Query: 62  TEILRNIKKLVHLRYLNLRFPKIVK-LPETLCELYNLEKLDISYCFNLKELPEGIGKLIN 120
            EI  +I KL+HLR ++L + K +K LPE LCEL NL+ L++  CF+L +LP G+ KLIN
Sbjct: 369 AEIPSSISKLIHLRQIDLSYNKDLKGLPEALCELDNLQTLNMDGCFSLVKLPRGVEKLIN 428

Query: 121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVC- 179
           ++HL N G   +  +P GI +LT LR+L  F +      D ++AC L  LKNL HLQ C 
Sbjct: 429 LRHLHNGGFEGV--LPKGISKLTCLRSLNRFSIGQ----DNQEACNLGDLKNLNHLQGCV 482

Query: 180 GIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDL 239
            I  L  V+DVGEAK+ EL KK  ++ L LRF K     E RK+ DD+LLL AL P   +
Sbjct: 483 CIMGLEIVADVGEAKQAELRKKTEVTRLELRFGKGD--AEWRKHHDDELLL-ALEPSPYV 539

Query: 240 KELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKR 299
           +EL I   +G TVFPSWM  L+NLK++ L+ C+ CE LPPLGKLP LE L I  M  V++
Sbjct: 540 EELGIYDYQGRTVFPSWMIFLSNLKTVILTNCKTCEHLPPLGKLPFLENLRIWGMDGVQK 599

Query: 300 VGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGN----TVINI 355
           VG EFLG+ES    SS      +AFPKL +LR   +   E W     + G+    T I I
Sbjct: 600 VGLEFLGLESSSSSSSG-----VAFPKLINLRFMRMRNWEVWADDFIKMGDEEDSTKITI 654

Query: 356 MPHLSSL 362
           MP L SL
Sbjct: 655 MPQLRSL 661

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 170/408 (41%), Positives = 241/408 (59%), Gaps = 43/408 (10%)

Query: 12  VSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKL 71
            ST  +K + TLL         + ++ ++E L    T LRALD+S+  L  E+ + + KL
Sbjct: 547 ASTCNMKNLHTLLAK------KAFDSRVLEAL-GNLTCLRALDLSRNRLIEELPKEVGKL 599

Query: 72  VHLRYLNLRFP-KIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTN 130
           +HLRYLNL     + +LPET+C+LYNL+ L+I  C  +++LP+ +GKLIN++HL N  T 
Sbjct: 600 IHLRYLNLSLCYSLRELPETICDLYNLQTLNIQGCI-IRKLPQAMGKLINLRHLENYNTR 658

Query: 131 SLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQ-VCGIRRLGDVSD 189
            L+ +P GIGRL+ L+TL  F VS+ G+ +    C++  L+NL +L+    I+ L +V D
Sbjct: 659 -LKGLPKGIGRLSSLQTLDVFIVSSHGNDE----CQIGDLRNLNNLRGRLSIQGLDEVKD 713

Query: 190 VGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRG 249
            GEA++ EL  K YL  L L+F     GGE    E  + + EAL+P  +LK L+I FN G
Sbjct: 714 AGEAEKAELKNKVYLQRLELKF-----GGE----EGTKGVAEALQPHPNLKSLDI-FNYG 763

Query: 250 NTVFPSWM--TSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGV 307
           +  +P+WM  +SL  LK L L  C  C  LPPLG+LP LE+L I  M  V+ +G EFLG 
Sbjct: 764 DREWPNWMMGSSLAQLKILHLRFCIRCPCLPPLGQLPILEELGILNMHGVQYIGSEFLG- 822

Query: 308 ESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSC 367
                   SSS V   FPKLK LRI  + EL++W+       +    IMP L+ L + +C
Sbjct: 823 --------SSSTV---FPKLKKLRISNMKELKQWEIKEKEERS----IMPCLNDLTMLAC 867

Query: 368 YELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNI 415
            +L+ LPDH+ Q T L++L+I     L  RYR   GED   ISHIP +
Sbjct: 868 PKLEGLPDHMLQRTPLQKLYIKYSPILERRYRKDIGEDGHKISHIPEV 915

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143886|ref|XP_002336089.1| predicted protein [Populus trichocarpa] gi|222872018|gb|EEF09149.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 169/417 (40%), Positives = 243/417 (58%), Gaps = 20/417 (4%)

Query: 6   KGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL 65
           + AS PVS   +K +R+LL+    SD+  +     ++L    T LRAL +S +S   EI 
Sbjct: 120 RNASFPVSFASLKNLRSLLVDYCKSDYPIVIGN-QDDLLSRLTCLRALKLSHIS-SEEIS 177

Query: 66  RNIKKLVHLRYLNLRFPKIVK-LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHL 124
             I KL+HLRYL+L   + +K LPE + ELYNL+ L++S C  L+ LP G+ +LIN++HL
Sbjct: 178 DKIGKLIHLRYLDLSDNQHLKYLPEEIGELYNLQTLNLSGCCELQRLPYGLCRLINLRHL 237

Query: 125 LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRK-ACRLESLKNLEHL-QVCGIR 182
            N  T+ L +MP GI RLT L++L +F V+       R+ +  L  L+NL +L +   I 
Sbjct: 238 NNYHTDKLTFMPRGIERLTSLKSLYKFVVNCS--YHSRELSSTLGDLQNLNYLRKYLEIS 295

Query: 183 RLGDVSD-VGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKE 241
            LG+ +D + EA++ +L KKK L  L+L F + +       ++ D+ +++AL PP  L+ 
Sbjct: 296 GLGNSTDMISEARKAQLKKKKQLVTLKLSFVECRA----LIHDQDEEIIQALEPPPSLEH 351

Query: 242 LEIQFNRGNTV-FPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRV 300
           LEI+   G  +  P+WM  L  L  + +S C NC  LPPLGKLP LE L IS M SV +V
Sbjct: 352 LEIEHYGGIKMKIPNWMMQLAKLSKICISKCRNCNNLPPLGKLPFLEYLEISDMRSVHKV 411

Query: 301 GDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLS 360
           GDEFLG+E++  ++        AFPKLK LR   +   +EWD  I         +MP L 
Sbjct: 412 GDEFLGIETNHKENEDKK---KAFPKLKELRFSHMYAWDEWDALIALEE----EVMPCLL 464

Query: 361 SLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNIHI 417
            L I  C +L+ALP  + Q TTL+ L + +CG LG +Y    G DW +ISHIP I+ 
Sbjct: 465 RLYIGFCDKLEALPAQLLQMTTLEELAVDHCGSLGGQYHWNVGVDWHHISHIPIIYF 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.851	0.337	0.314	1.2e-32
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.811	0.238	0.300	2e-28
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.210	0.074	0.373	6.8e-11
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.200	0.092	0.380	3.5e-10
TAIR|locus:2146228	1245	AT5G18350 [Arabidopsis thalian	0.217	0.073	0.361	5.6e-10
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.454	0.156	0.283	3.7e-09
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.344	0.158	0.294	9.7e-09
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.332	0.154	0.322	2.3e-08
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.559	0.274	0.272	7e-08
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.248	0.087	0.327	1e-07

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 124/394 (31%), Positives = 189/394 (47%)

Query:    15 RRVKRMRTLL-ISASGSDHSS-LNAEIVEELFRESTSLRALDVSQVS---LPTEILRNIK 69
             R VK +RT L +S + S  S  L+  + E+L    T LR L +S      LP +  +NI 
Sbjct:   543 REVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNIS 602

Query:    70 KLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT 129
                H R+L+L   ++ KLP++LC +YNL+ L +SYC +LKELP  I  LIN+++L   GT
Sbjct:   603 ---HARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT 659

Query:   130 NSLRYMPVGIXXXXXXXXXXEFRVSAGGDVDGRKACRLESLKNLE-HLQVCGIRRLGDVS 188
               LR MP              F VSA    DG +   L  L +L   L++  ++R+ DV+
Sbjct:   660 K-LRQMPRRFGRLKSLQTLTTFFVSAS---DGSRISELGGLHDLHGKLKIVELQRVVDVA 715

Query:   189 DVGEAKRLELDKKKYLSCLRLRFDXXXXXXXXXXN----EDDQXXXXXXXXXXXXKELEI 244
             D  EA    L+ KK+L  +   +           N    +++             ++L I
Sbjct:   716 DAAEAN---LNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAI 772

Query:   245 QFNRGNTVFPSWMT--SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGD 302
             +  +G   FP W++  S + +  + L  C+ C  LP LG+LP L++L IS M  ++ +G 
Sbjct:   773 ERYKGRR-FPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGR 831

Query:   303 EFLGVESDRHDXXXXXLVIIAFPKLKSLRIEGLMELEEW-DYGITRTGNTVINIMPHLSS 361
             +F   +    D          F  L++LR + L + +EW D  +TR G+    + P L  
Sbjct:   832 KFYFSDQQLRDQDQQ-----PFRSLETLRFDNLPDWQEWLDVRVTR-GD----LFPSLKK 881

Query:   362 LVIDSCYELKA-LPDHIHQTTTLKRLWILNCGPL 394
             L I  C EL   LP  +    +L  L I  CG L
Sbjct:   882 LFILRCPELTGTLPTFL---PSLISLHIYKCGLL 912

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 112/373 (30%), Positives = 169/373 (45%)

Query:    20 MRTLLI--SASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYL 77
             +RT+L   S +  +   L  +++  L    + LR L +S   + T + +++K L  LRYL
Sbjct:   543 LRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQI-TNLPKSLKGLKLLRYL 601

Query:    78 NLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPV 137
             +L   KI +LPE +C L NL+ L +S C +L  LP+ I +LIN++ L   GT  L  MP 
Sbjct:   602 DLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGT-PLVEMPP 660

Query:   138 GIXXXXXXXXXXEFRVSAGGDVDGRKACRLESLKNLEHLQ-VCGIRRLGDVSDVGEAKRL 196
             GI           F +   G + G     L  LK L HL+    I  L +V+   EAK  
Sbjct:   661 GIKKLRSLQKLSNFVI---GRLSG---AGLHELKELSHLRGTLRISELQNVAFASEAKDA 714

Query:   197 ELDKKKYLSCLRLRFDXXXXXXX-XXXNE---DDQXXXXXXXXXXXXKELEIQFNRGNTV 252
              L +K +L  L L++            N    D +            K   I+  +G   
Sbjct:   715 GLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGA- 773

Query:   253 FPSWM--TSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVG-DEFLGVES 309
             FP W+  +S   + S+ LS C  C  LPP+G+LPSL+ L I   + +++VG D F G  +
Sbjct:   774 FPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENN 833

Query:   310 DRHDXXXXXLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYE 369
              R          + F  L+ L+  G+   +EW       G     I P L  L+I  C  
Sbjct:   834 SRG---------VPFQSLQILKFYGMPRWDEWICPELEDG-----IFPCLQKLIIQRCPS 879

Query:   370 L-KALPDHIHQTT 381
             L K  P+ +  +T
Sbjct:   880 LRKKFPEGLPSST 892

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
 Identities = 37/99 (37%), Positives = 59/99 (59%)

Query:    47 STSLRALDV----SQVSLPTEI--LRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKL 100
             +T+L  LD+    S V LP+ I  L N+KKL    +LN R   +VKLP +   + +L++L
Sbjct:   703 ATNLLELDLIDCSSLVKLPSSIGNLTNLKKL----FLN-RCSSLVKLPSSFGNVTSLKEL 757

Query:   101 DISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGI 139
             ++S C +L E+P  IG ++N+K +   G +SL  +P  I
Sbjct:   758 NLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSI 796

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
 Identities = 35/92 (38%), Positives = 47/92 (51%)

Query:   324 FPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTL 383
             FP+L +L I G  ELEEW   I   G+     MP L +L I  C +LK LPD +   T+L
Sbjct:   818 FPQLCALGISGESELEEW---IVEEGS-----MPCLRTLTIHDCEKLKELPDGLKYITSL 869

Query:   384 KRLWILNCGPLGERYRTGEGEDWPNISHIPNI 415
             K L I       +      GED+  + HIP++
Sbjct:   870 KELKIREMKREWKEKLVPGGEDYYKVQHIPDV 901

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2146228 AT5G18350 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
 Identities = 34/94 (36%), Positives = 54/94 (57%)

Query:    32 HSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK-LPET 90
             HS    EI +     +T+L  LD+S  S   E+  +I K  +L+ L L    ++K LP +
Sbjct:   654 HSKDLKEIPD--LSNATNLEELDLSSCSGLLELTDSIGKATNLKRLKLACCSLLKKLPSS 711

Query:    91 LCELYNLEKLDISYCFNLKELPEGIGKLINMKHL 124
             + +  NL+ LD+ +C + +ELP+ IGKL N+K L
Sbjct:   712 IGDATNLQVLDLFHCESFEELPKSIGKLTNLKVL 745

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
 Identities = 57/201 (28%), Positives = 101/201 (50%)

Query:    13 STRRVKRMRTLLISASGSDHSSLN--AEIVEELFR--ESTSLRALDVSQVSLPTEILRNI 68
             S++ +K +  L  SA+  +  +LN  + +VE  F    +T L  L++S  S   E+  +I
Sbjct:   683 SSKNLKELPDLS-SATNLEVLNLNGCSSLVELPFSIGNATKLLKLELSGCSSLLELPSSI 741

Query:    69 KKLVHLRYLNLRF-PKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR 127
                ++L+ ++      +V+LP ++    NL++LD+S C +LKELP  IG   N+K L   
Sbjct:   742 GNAINLQTIDFSHCENLVELPSSIGNATNLKELDLSCCSSLKELPSSIGNCTNLKKLHLI 801

Query:   128 GTNSLRYMPVGIXXXXXXXXXXEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDV 187
               +SL+ +P  I          E  ++    +  +    + +  NLE L + G   L ++
Sbjct:   802 CCSSLKELPSSIGNCTNLK---ELHLTCCSSLI-KLPSSIGNAINLEKLILAGCESLVEL 857

Query:   188 -SDVGEAKRLELDKKKYLSCL 207
              S +G+A  L++    YLSCL
Sbjct:   858 PSFIGKATNLKILNLGYLSCL 878

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
 Identities = 48/163 (29%), Positives = 76/163 (46%)

Query:   262 NLKSLGLSLCENCEQLPPLGKLPS-LEQLFISYMSSVKR---VGDEFLGVESDR--HDXX 315
             +LK LGL++     ++P   + P  L  LF+ Y    +    + ++ L ++S R      
Sbjct:   749 HLKQLGLAV--RMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAF 806

Query:   316 XXXLVIIA---FPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKA 372
                 ++ +   FP+L  + I    ELEEW   I   G+     MP L +L ID C +LK 
Sbjct:   807 LGSRMVCSKGGFPQLCVIEISKESELEEW---IVEEGS-----MPCLRTLTIDDCKKLKE 858

Query:   373 LPDHIHQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNI 415
             LPD +   T+LK L I       +      GED+  + HIP++
Sbjct:   859 LPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDV 901

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
 Identities = 51/158 (32%), Positives = 74/158 (46%)

Query:   265 SLGLSLCE--NCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFL---GVESDRHDXXXXXL 319
             SLG+ L +  +  QLPP   +  +  LF         + ++ L    VE  R       +
Sbjct:   745 SLGVHLSKIPDQHQLPP--HIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRM 802

Query:   320 VII--AFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHI 377
             V     FP+L++L+I    ELEEW   I   G+     MP L  L+I SC +L+ LPD +
Sbjct:   803 VCSKGGFPQLRALQISEQSELEEW---IVEEGS-----MPCLRDLIIHSCEKLEELPDGL 854

Query:   378 HQTTTLKRLWILNCGPLGERYRTGEGEDWPNISHIPNI 415
                T+LK L I   G   E      GED+  + HIP++
Sbjct:   855 KYVTSLKELKIE--GMKREWKEKLVGEDYYKVQHIPDV 890

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 71/261 (27%), Positives = 119/261 (45%)

Query:    19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQ--VSLP-TEILRNIKKLVHLR 75
             ++R ++ +    + + LN+++ ++ F +   LR LD+S+     P +EIL  I  L HL 
Sbjct:   531 KLRGVVSTTKTGEVNKLNSDLAKK-FTDCKYLRVLDISKSIFDAPLSEILDEIASLQHLA 589

Query:    76 YLNL-RFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTN--SL 132
              L+L     +++ P ++ +L+NL+ LD SYC NLK+L   I  ++  K L+   TN  SL
Sbjct:   590 CLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCI--VLFKKLLVLDMTNCGSL 647

Query:   133 RYMPVGIXXXXXXXXXXEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRL-GDVSDVG 191
                P GI           F+ +   +      C+L  +KNL +L+  G+    GD  +  
Sbjct:   648 ECFPKGIGSLVKLEVLLGFKPARSNN-----GCKLSEVKNLTNLRKLGLSLTRGDQIEEE 702

Query:   192 EAKRLELDKKKYLSCLRLRFDXXXXXXXXXXNEDDQXXXXXXXXXXXXKELEIQFNRGNT 251
             E   L ++  K +S     +D           +D               EL +QF  G +
Sbjct:   703 ELDSL-INLSKLMSISINCYDSY--------GDDLITKIDALTPPHQLHELSLQFYPGKS 753

Query:   252 VFPSWMTSLTNLKSLG-LSLC 271
               PSW+ S   L  L  +S+C
Sbjct:   754 S-PSWL-SPHKLPMLRYMSIC 772

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 35/107 (32%), Positives = 57/107 (53%)

Query:    36 NAEIVEEL--FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLR-FPKIVKLPETLC 92
             N   +E+L     +T LR L +   S   E+  +I    +L+ LN+     +VKLP ++ 
Sbjct:   770 NCSSLEKLPAIENATKLRELKLQNCSSLIELPLSIGTATNLKQLNISGCSSLVKLPSSIG 829

Query:    93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGI 139
             ++ +LE  D+S C +L  LP  IG L N+  L+ RG + L  +P+ I
Sbjct:   830 DITDLEVFDLSNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEALPINI 876

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	418
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-06

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 23/236 (9%)

Query: 68  IKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR 127
           +  L  LR ++LR  K +K    L    NLE L +S C +L ELP  I  L  ++ L   
Sbjct: 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689

Query: 128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDV 187
              +L  +P GI     L++L  +R++  G        RL+S  ++       I  L   
Sbjct: 690 RCENLEILPTGIN----LKSL--YRLNLSG------CSRLKSFPDIS----TNISWL--- 730

Query: 188 SDVGEAKRLELDKKKYLSCL-RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF 246
            D+ E    E      L  L  L   + K      + +    L+  L P   L  L +  
Sbjct: 731 -DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP--SLTRLFLSD 787

Query: 247 NRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGD 302
                  PS + +L  L+ L +  C N E LP    L SLE L +S  S ++   D
Sbjct: 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	418
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.53
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.52
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.45
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.39
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.35
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.34
KOG4341	483	consensus F-box protein containing LRR [General fu	99.33
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.32
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
KOG4341	483	consensus F-box protein containing LRR [General fu	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.83
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.62
PLN03150	623	hypothetical protein; Provisional	98.59
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.56
PLN03150	623	hypothetical protein; Provisional	98.55
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.48
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.4
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.37
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.37
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.07
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.94
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.75
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.71
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.36
PRK15386	426	type III secretion protein GogB; Provisional	97.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.9
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.61
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.49
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.46
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.96
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.25
KOG4308	478	consensus LRR-containing protein [Function unknown	92.33
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.14
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.59
KOG4308	478	consensus LRR-containing protein [Function unknown	88.06
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.93
smart00370	26	LRR Leucine-rich repeats, outliers.	85.93

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=4.7e-28  Score=255.95  Aligned_cols=350  Identities=17%  Similarity=0.143  Sum_probs=214.7

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-c
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-K   86 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~   86 (418)
                      +.+|..|.++++|++|+|++|.     +........+..+++|++|++++|.+.+.+|.  ..+++|++|++++|.+. .
T Consensus        83 ~~~~~~~~~l~~L~~L~Ls~n~-----~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~  155 (968)
T PLN00113         83 GKISSAIFRLPYIQTINLSNNQ-----LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE  155 (968)
T ss_pred             ccCChHHhCCCCCCEEECCCCc-----cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc
Confidence            3467778888899999998887     44323344456788888888888876665553  45777888888888765 6


Q ss_pred             CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826           87 LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR  166 (418)
Q Consensus        87 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  166 (418)
                      +|..+..+++|++|++++|.+.+.+|..++++++|++|++++|...+.+|..++++++|++|++.++....       ..
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------~~  228 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-------EI  228 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-------cC
Confidence            67777788888888888887667777778888888888888877767777778888888888877765542       12


Q ss_pred             cccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826          167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF  246 (418)
Q Consensus       167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (418)
                      ...+.++++|+.+++.......    .....+..+++|+.|++.+|...           ...+..+..+++|++|++++
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLS-----------GPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             ChhHhcCCCCCEEECcCceecc----ccChhHhCCCCCCEEECcCCeee-----------ccCchhHhhccCcCEEECcC
Confidence            2334455555555554332111    11224455677777777766532           22344455566777777777


Q ss_pred             ecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCC-------CCCc
Q 014826          247 NRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-------SSSS  318 (418)
Q Consensus       247 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  318 (418)
                      |.+...+|.++..+++|+.|++++|.+.+..|. +..+++|+.|++++|.....++.........+...       ...+
T Consensus       294 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence            766666666666777777777777766655554 56667777777766653222322110000000000       0000


Q ss_pred             cccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCch
Q 014826          319 LVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPL  394 (418)
Q Consensus       319 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l  394 (418)
                      .....+++|+.|++.++.-...++.        .+..+++|++|++.+|.....+|..+..+++|+.|++++|...
T Consensus       374 ~~~~~~~~L~~L~l~~n~l~~~~p~--------~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  441 (968)
T PLN00113        374 EGLCSSGNLFKLILFSNSLEGEIPK--------SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ  441 (968)
T ss_pred             hhHhCcCCCCEEECcCCEecccCCH--------HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence            0012233444444443221112221        2236788888888888544466767777888999999888744

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=1.9e-27  Score=251.36  Aligned_cols=357  Identities=20%  Similarity=0.148  Sum_probs=211.3

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-c
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-K   86 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~   86 (418)
                      +.+|..+.++++|++|++++|.     +.. .+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+. .
T Consensus       202 ~~~p~~l~~l~~L~~L~L~~n~-----l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        202 GQIPRELGQMKSLKWIYLGYNN-----LSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             CcCChHHcCcCCccEEECcCCc-----cCC-cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence            4578888999999999999887     433 25555888899999999988877778888888999999999988865 6


Q ss_pred             CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826           87 LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR  166 (418)
Q Consensus        87 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  166 (418)
                      +|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++.+|.....       .
T Consensus       276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~  348 (968)
T PLN00113        276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE-------I  348 (968)
T ss_pred             CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc-------C
Confidence            777888888999999988887777888888888888888888877777888888888888888877765421       1


Q ss_pred             cccccCCcccccccccccCC---Ccch-----------------hhhhhhhcCCcccccceEeecccccCCCCCccccch
Q 014826          167 LESLKNLEHLQVCGIRRLGD---VSDV-----------------GEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDD  226 (418)
Q Consensus       167 ~~~l~~L~~L~~l~~~~~~~---~~~~-----------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  226 (418)
                      ...+..+++|+.+++.....   ++..                 .......+..+++|+.|++.+|...           
T Consensus       349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~-----------  417 (968)
T PLN00113        349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS-----------  417 (968)
T ss_pred             ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee-----------
Confidence            22233344444444432221   1110                 0001112233445555555444421           


Q ss_pred             hhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccC
Q 014826          227 QLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLG  306 (418)
Q Consensus       227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~  306 (418)
                      ...+..+..++.|+.|++++|.+....+..+..+++|+.|++++|.+.+.+|.....++|+.|++++|.....++..+..
T Consensus       418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~  497 (968)
T PLN00113        418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGS  497 (968)
T ss_pred             eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhh
Confidence            11223334444555555555544444444444444555555555544444443333344444444444421111111000


Q ss_pred             CCCCc-------cCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccC
Q 014826          307 VESDR-------HDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQ  379 (418)
Q Consensus       307 ~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  379 (418)
                      ....+       ......+.....+++|++|+++++.-...++..        +..+++|++|++++|.....+|..+..
T Consensus       498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--------~~~l~~L~~L~Ls~N~l~~~~p~~l~~  569 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS--------FSEMPVLSQLDLSQNQLSGEIPKNLGN  569 (968)
T ss_pred             hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh--------HhCcccCCEEECCCCcccccCChhHhc
Confidence            00000       000000011334555555555553322222222        236788888888888555577877777


Q ss_pred             CCCccEEEeccCCchhc
Q 014826          380 TTTLKRLWILNCGPLGE  396 (418)
Q Consensus       380 ~~~L~~L~l~~c~~l~~  396 (418)
                      +++|+.|++++|+..+.
T Consensus       570 l~~L~~l~ls~N~l~~~  586 (968)
T PLN00113        570 VESLVQVNISHNHLHGS  586 (968)
T ss_pred             CcccCEEeccCCcceee
Confidence            88888888888885543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=6.1e-26  Score=208.76  Aligned_cols=330  Identities=18%  Similarity=0.168  Sum_probs=223.1

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhh
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLC   92 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~   92 (418)
                      |.++++|+.+++..|.     ++.  +|.+.....+|+.|+|.+|.+.+.-.+.++.++.|+.||++.|.+.++| ..+.
T Consensus        98 f~nl~nLq~v~l~~N~-----Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp  170 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNE-----LTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFP  170 (873)
T ss_pred             HhcCCcceeeeeccch-----hhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence            4555666666665554     444  5554444555666666666654444455677788888888888888776 4455


Q ss_pred             cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826           93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN  172 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  172 (418)
                      .-.++++|+|++|++.+--...+.++.+|..|.+++|.+..--+..|.++++|+.|++..|...      +. ....+..
T Consensus       171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir------iv-e~ltFqg  243 (873)
T KOG4194|consen  171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR------IV-EGLTFQG  243 (873)
T ss_pred             CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee------ee-hhhhhcC
Confidence            6678889999888844433445778888999999988655444456667999999998887654      11 1223333


Q ss_pred             CcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC
Q 014826          173 LEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV  252 (418)
Q Consensus       173 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  252 (418)
                      |.+|+.+.+...+ +....+   ..+..|.+++.|++..|...           ..-..++.+++.|+.|+++.|.+...
T Consensus       244 L~Sl~nlklqrN~-I~kL~D---G~Fy~l~kme~l~L~~N~l~-----------~vn~g~lfgLt~L~~L~lS~NaI~ri  308 (873)
T KOG4194|consen  244 LPSLQNLKLQRND-ISKLDD---GAFYGLEKMEHLNLETNRLQ-----------AVNEGWLFGLTSLEQLDLSYNAIQRI  308 (873)
T ss_pred             chhhhhhhhhhcC-cccccC---cceeeecccceeecccchhh-----------hhhcccccccchhhhhccchhhhhee
Confidence            4444433332211 111111   13566788999999988743           33345667889999999999987777


Q ss_pred             CchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccc
Q 014826          253 FPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLR  331 (418)
Q Consensus       253 ~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  331 (418)
                      .++..+.+++|+.|+|++|.++..-+. +..+..|++|.|+.|. +.++....                +.++.+|+.|+
T Consensus       309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a----------------f~~lssL~~Ld  371 (873)
T KOG4194|consen  309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA----------------FVGLSSLHKLD  371 (873)
T ss_pred             ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhH----------------HHHhhhhhhhc
Confidence            777778899999999999987754443 7778889999999988 66665543                34678999999


Q ss_pred             cccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccEEEeccCCchh
Q 014826          332 IEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       332 l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~  395 (418)
                      +++. .+....   . .+......+++|++|.+.++ +++.++. .+..+++|+.|++.+|+..+
T Consensus       372 Lr~N-~ls~~I---E-Daa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  372 LRSN-ELSWCI---E-DAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             CcCC-eEEEEE---e-cchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCccee
Confidence            8862 221111   1 12222337899999999999 7888885 67779999999998887443

>PLN03210 Resistant to P

Probab=99.89  E-value=1.3e-22  Score=215.33  Aligned_cols=339  Identities=22%  Similarity=0.203  Sum_probs=188.4

Q ss_pred             cccccceeeEEeecCCCCCC-CCccHHHHHHHhccCC-CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchh
Q 014826           13 STRRVKRMRTLLISASGSDH-SSLNAEIVEELFREST-SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET   90 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~   90 (418)
                      .|.++++|+.|.++.+.... ..+.. .+|..+..++ +|+.|++.++. ...+|..+ ...+|++|++.++.+..++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~-~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRW-HLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSKLEKLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEeccccccccccee-ecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCccccccccc
Confidence            46677777777776543000 00000 1222233332 46666666655 34444444 345666666666666666555


Q ss_pred             hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccc
Q 014826           91 LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESL  170 (418)
Q Consensus        91 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  170 (418)
                      +..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+.++++|+.|++.+|.....++       .. 
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp-------~~-  700 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP-------TG-  700 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC-------Cc-
Confidence            55666666666666554555553 5556666666666665555566666666666666665544331111       00 


Q ss_pred             cCCcccccccccccCCCcchhhhh---------------hhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCC
Q 014826          171 KNLEHLQVCGIRRLGDVSDVGEAK---------------RLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRP  235 (418)
Q Consensus       171 ~~L~~L~~l~~~~~~~~~~~~~~~---------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (418)
                      .++++|+.+++..+..+..++...               ......+++|++|.+..+......    .......+.....
T Consensus       701 i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~----~~~~~l~~~~~~~  776 (1153)
T PLN03210        701 INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW----ERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcc----ccccccchhhhhc
Confidence            023333333333322211111000               000001234444444332110000    0000000111223


Q ss_pred             CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCC
Q 014826          236 PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSS  315 (418)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  315 (418)
                      +++|+.|++++|.....+|.+++.+++|+.|++++|...+.+|....+++|+.|++++|..+..++.             
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-------------  843 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-------------  843 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-------------
Confidence            5788999999887777788888899999999999998777777755788999999999886655542             


Q ss_pred             CCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchh
Q 014826          316 SSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       316 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~  395 (418)
                             ..++|+.|++.+ .+++.++....        .+++|+.|++.+|++++.+|.....+++|+.+++++|+.+.
T Consensus       844 -------~~~nL~~L~Ls~-n~i~~iP~si~--------~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        844 -------ISTNISDLNLSR-TGIEEVPWWIE--------KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             -------cccccCEeECCC-CCCccChHHHh--------cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence                   235677777766 45666654443        67778888888887777777666667777777887777665


Q ss_pred             c
Q 014826          396 E  396 (418)
Q Consensus       396 ~  396 (418)
                      .
T Consensus       908 ~  908 (1153)
T PLN03210        908 E  908 (1153)
T ss_pred             c
Confidence            3

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=3.3e-25  Score=205.66  Aligned_cols=329  Identities=22%  Similarity=0.211  Sum_probs=211.9

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH------------------------HH
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE------------------------IL   65 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------------------------~~   65 (418)
                      +|.++..++++++|.|...+     +..  +|+-++.+.+|+.|.+.+|++...                        +|
T Consensus        24 FP~~v~qMt~~~WLkLnrt~-----L~~--vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP   96 (1255)
T KOG0444|consen   24 FPHDVEQMTQMTWLKLNRTK-----LEQ--VPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIP   96 (1255)
T ss_pred             CchhHHHhhheeEEEechhh-----hhh--ChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCC
Confidence            77777788888888777655     443  565677777777777777663221                        23


Q ss_pred             HhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccccc
Q 014826           66 RNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRLTG  144 (418)
Q Consensus        66 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  144 (418)
                      ..+-++..|+.|+++.|.+.++|..+...+++-+|+|++|. +..+|.. +.++.-|-.|+++.| ..+.+|..+..+..
T Consensus        97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~  174 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSM  174 (1255)
T ss_pred             chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhh
Confidence            33334555666666666666666656666666666666665 5555543 345566666666666 44566777777777


Q ss_pred             cceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCcccc
Q 014826          145 LRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNE  224 (418)
Q Consensus       145 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  224 (418)
                      |++|.+++|+..       .+.+..++.+++|..++.......   -..+...+..+.+|..++++.|++          
T Consensus       175 LqtL~Ls~NPL~-------hfQLrQLPsmtsL~vLhms~TqRT---l~N~Ptsld~l~NL~dvDlS~N~L----------  234 (1255)
T KOG0444|consen  175 LQTLKLSNNPLN-------HFQLRQLPSMTSLSVLHMSNTQRT---LDNIPTSLDDLHNLRDVDLSENNL----------  234 (1255)
T ss_pred             hhhhhcCCChhh-------HHHHhcCccchhhhhhhcccccch---hhcCCCchhhhhhhhhccccccCC----------
Confidence            777777776654       455667777777777766543210   011111344456777777777754          


Q ss_pred             chhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccc
Q 014826          225 DDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEF  304 (418)
Q Consensus       225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~  304 (418)
                        ..+++.+.++++|+.|++++|.++ ++....+.-.+|++|+++.|+++.....+.++++|+.|.+..|+    +.-+.
T Consensus       235 --p~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk----L~FeG  307 (1255)
T KOG0444|consen  235 --PIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK----LTFEG  307 (1255)
T ss_pred             --CcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc----ccccC
Confidence              345666777777888888877443 32223334457777888877666433347778888888887776    22222


Q ss_pred             cCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCcc
Q 014826          305 LGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLK  384 (418)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~  384 (418)
                      .+..            ++.+-.|+.++..+ ++++-.|        ++++.|+.|++|.++.+ .+-.+|..++-++.|+
T Consensus       308 iPSG------------IGKL~~Levf~aan-N~LElVP--------EglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~  365 (1255)
T KOG0444|consen  308 IPSG------------IGKLIQLEVFHAAN-NKLELVP--------EGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLK  365 (1255)
T ss_pred             Cccc------------hhhhhhhHHHHhhc-cccccCc--------hhhhhhHHHHHhccccc-ceeechhhhhhcCCcc
Confidence            2221            56777888887777 5555555        44559999999999776 6778999888899999


Q ss_pred             EEEeccCCchhc
Q 014826          385 RLWILNCGPLGE  396 (418)
Q Consensus       385 ~L~l~~c~~l~~  396 (418)
                      +|+++.||.+..
T Consensus       366 vLDlreNpnLVM  377 (1255)
T KOG0444|consen  366 VLDLRENPNLVM  377 (1255)
T ss_pred             eeeccCCcCccC
Confidence            999999997653

>PLN03210 Resistant to P

Probab=99.88  E-value=7.6e-22  Score=209.54  Aligned_cols=315  Identities=23%  Similarity=0.283  Sum_probs=214.1

Q ss_pred             CCCccccccc-eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC-Ccc
Q 014826            9 SLPVSTRRVK-RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK-IVK   86 (418)
Q Consensus         9 ~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~   86 (418)
                      .+|..|..++ +|+.|.+.++.     ++.  +|..+ ...+|++|++.++. ...++..+..+++|++|+++++. ++.
T Consensus       579 ~lp~~~~~lp~~Lr~L~~~~~~-----l~~--lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~  649 (1153)
T PLN03210        579 HLPEGFDYLPPKLRLLRWDKYP-----LRC--MPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKE  649 (1153)
T ss_pred             ecCcchhhcCcccEEEEecCCC-----CCC--CCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCc
Confidence            3666676665 58888888776     444  44434 45788888888887 55666677778888888888765 666


Q ss_pred             CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCc----
Q 014826           87 LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGR----  162 (418)
Q Consensus        87 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----  162 (418)
                      +|. +..+++|+.|++.+|.....+|..++.+++|+.|++++|...+.+|..+ ++++|+.|++.+|......+..    
T Consensus       650 ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL  727 (1153)
T PLN03210        650 IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNI  727 (1153)
T ss_pred             CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCc
Confidence            764 6678888888888887777888888888888888888877677777665 6777888777766432111100    


Q ss_pred             -----ccccccccc---CCcccccccccccCC--Cc-chhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhh
Q 014826          163 -----KACRLESLK---NLEHLQVCGIRRLGD--VS-DVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLE  231 (418)
Q Consensus       163 -----~~~~~~~l~---~L~~L~~l~~~~~~~--~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  231 (418)
                           ....+..++   .+++|..+.......  +. ............+++|+.|++++|..           ...++.
T Consensus       728 ~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~-----------l~~lP~  796 (1153)
T PLN03210        728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS-----------LVELPS  796 (1153)
T ss_pred             CeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC-----------ccccCh
Confidence                 000000111   122222222221110  00 00000001112346899999988763           234566


Q ss_pred             hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCc
Q 014826          232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDR  311 (418)
Q Consensus       232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~  311 (418)
                      .+.++++|+.|++++|.....+|..+ .+++|+.|++++|.....+|..  .++|+.|++.++. ++.+|..        
T Consensus       797 si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s--------  864 (1153)
T PLN03210        797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW--------  864 (1153)
T ss_pred             hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH--------
Confidence            78889999999999987666677654 7899999999999877666653  4689999999886 6666543        


Q ss_pred             cCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCC
Q 014826          312 HDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALP  374 (418)
Q Consensus       312 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  374 (418)
                               +..+++|+.|++.+|++++.++....        .+++|+.+++.+|..++.++
T Consensus       865 ---------i~~l~~L~~L~L~~C~~L~~l~~~~~--------~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        865 ---------IEKFSNLSFLDMNGCNNLQRVSLNIS--------KLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             ---------HhcCCCCCEEECCCCCCcCccCcccc--------cccCCCeeecCCCccccccc
Confidence                     55789999999999999999887655        78999999999998887553

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=4.3e-24  Score=196.66  Aligned_cols=347  Identities=18%  Similarity=0.173  Sum_probs=249.1

Q ss_pred             ccCCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHH-HhhccccccceeeeCCCC
Q 014826            5 SKGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL-RNIKKLVHLRYLNLRFPK   83 (418)
Q Consensus         5 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~   83 (418)
                      +.-..+|.......+|+.|+|.+|.     |+. +-.+.++-++.||.|||+.|. +..++ ..|.+-.++++|+++.|.
T Consensus       112 N~Lt~IP~f~~~sghl~~L~L~~N~-----I~s-v~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~  184 (873)
T KOG4194|consen  112 NELTRIPRFGHESGHLEKLDLRHNL-----ISS-VTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR  184 (873)
T ss_pred             chhhhcccccccccceeEEeeeccc-----ccc-ccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc
Confidence            3344578766666789999999998     444 344557888999999999998 44443 346677889999999999


Q ss_pred             CccCc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCC
Q 014826           84 IVKLP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDG  161 (418)
Q Consensus        84 l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  161 (418)
                      ++.+. ..|..+.+|..|.|+.|+ ++.+|. .+..+++|+.|++..|.+...--..|..+++|+.+.+..|...    .
T Consensus       185 It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~----k  259 (873)
T KOG4194|consen  185 ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS----K  259 (873)
T ss_pred             ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc----c
Confidence            99775 567788899999999999 666765 5677999999999999443222455778999999998877654    2


Q ss_pred             ccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcE
Q 014826          162 RKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKE  241 (418)
Q Consensus       162 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~  241 (418)
                      ..+..+-.+.++.   .+++.....    .......+.++..|+.|++++|.+           .+...+.+..+++|++
T Consensus       260 L~DG~Fy~l~kme---~l~L~~N~l----~~vn~g~lfgLt~L~~L~lS~NaI-----------~rih~d~WsftqkL~~  321 (873)
T KOG4194|consen  260 LDDGAFYGLEKME---HLNLETNRL----QAVNEGWLFGLTSLEQLDLSYNAI-----------QRIHIDSWSFTQKLKE  321 (873)
T ss_pred             ccCcceeeecccc---eeecccchh----hhhhcccccccchhhhhccchhhh-----------heeecchhhhccccee
Confidence            2233333444444   433322111    111122456778999999999873           3445567778899999


Q ss_pred             EEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccc
Q 014826          242 LEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLV  320 (418)
Q Consensus       242 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (418)
                      |+++.|++..--+.++..+..|++|+|+.|........ +..+.+|+.|+|+.|. +...-.+....             
T Consensus       322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~-------------  387 (873)
T KOG4194|consen  322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVA-------------  387 (873)
T ss_pred             EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhh-------------
Confidence            99999988777778888999999999999976543332 7789999999999988 43332222211             


Q ss_pred             cccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcC-CccccCCCCccEEEeccCCchhcccC
Q 014826          321 IIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKAL-PDHIHQTTTLKRLWILNCGPLGERYR  399 (418)
Q Consensus       321 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~  399 (418)
                      +.++++|+.|++.+ ++++.++....       ..+++|++|++.++. +.++ +..+..+ .|+.|.+..-..+. .|+
T Consensus       388 f~gl~~LrkL~l~g-Nqlk~I~krAf-------sgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nSssflC-DCq  456 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTG-NQLKSIPKRAF-------SGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNSSSFLC-DCQ  456 (873)
T ss_pred             hccchhhhheeecC-ceeeecchhhh-------ccCcccceecCCCCc-ceeecccccccc-hhhhhhhcccceEE-ecc
Confidence            45789999999999 78998886654       478999999999984 5555 4566656 88888875544333 354


Q ss_pred             CCCCCCC
Q 014826          400 TGEGEDW  406 (418)
Q Consensus       400 ~~~~~~~  406 (418)
                      -.|...|
T Consensus       457 l~Wl~qW  463 (873)
T KOG4194|consen  457 LKWLAQW  463 (873)
T ss_pred             HHHHHHH
Confidence            4444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=3.1e-23  Score=192.64  Aligned_cols=332  Identities=17%  Similarity=0.182  Sum_probs=196.3

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC   92 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~   92 (418)
                      +.+.+|-+|-.|+++|.     +++..+|+....++.++-|.|.... ...+|+.+++|.+|++|.++.|.+..+...+.
T Consensus         2 ~tgVLpFVrGvDfsgND-----Fsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs   75 (1255)
T KOG0444|consen    2 STGVLPFVRGVDFSGND-----FSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLISVHGELS   75 (1255)
T ss_pred             CccccceeecccccCCc-----CCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc
Confidence            34567888999999997     5655788889999999999999988 77889999999999999999999887777778


Q ss_pred             cCCCCcEEeccCccC-cccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccccccc
Q 014826           93 ELYNLEKLDISYCFN-LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLK  171 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  171 (418)
                      .++.|+.+.++.|.. ..-+|..+-.+.-|+.|+++.| .....|..+....++-.|++++|.+.+     ++  -.-+-
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~Iet-----IP--n~lfi  147 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIET-----IP--NSLFI  147 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCcccc-----CC--chHHH
Confidence            888888888887762 2346777878888888888888 556778888777778888877766531     11  11223


Q ss_pred             CCcccccccccc--cCCCcchhhhhhhhcCCcccccceEeecccccCCCC--------------CccccchhhhhhhCCC
Q 014826          172 NLEHLQVCGIRR--LGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGE--------------RRKNEDDQLLLEALRP  235 (418)
Q Consensus       172 ~L~~L~~l~~~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~l~~  235 (418)
                      +|..|-.+++..  .+.+|.       .++.+.+|++|.+++|.+...+.              ..++.....++..+..
T Consensus       148 nLtDLLfLDLS~NrLe~LPP-------Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~  220 (1255)
T KOG0444|consen  148 NLTDLLFLDLSNNRLEMLPP-------QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD  220 (1255)
T ss_pred             hhHhHhhhccccchhhhcCH-------HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence            444443333332  222222       34445566666666665321000              0000112223333334


Q ss_pred             CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCC
Q 014826          236 PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSS  315 (418)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  315 (418)
                      +.+|..++++.| ....+|+.+..+++|+.|+|++|.+++.-...+...+|+.|+++.|. +..+|..            
T Consensus       221 l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a------------  286 (1255)
T KOG0444|consen  221 LHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDA------------  286 (1255)
T ss_pred             hhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHH------------
Confidence            444444444444 22334444444445555555554444333333334444555554444 3333332            


Q ss_pred             CCccccccCCccccccccccccc--ccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCc
Q 014826          316 SSSLVIIAFPKLKSLRIEGLMEL--EEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP  393 (418)
Q Consensus       316 ~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~  393 (418)
                           +..+++|+.|.+.+ +++  +.+|.+..        .+..|+.+...++ ++.-+|..+..|..|++|.+..|+.
T Consensus       287 -----vcKL~kL~kLy~n~-NkL~FeGiPSGIG--------KL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  287 -----VCKLTKLTKLYANN-NKLTFEGIPSGIG--------KLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             -----HhhhHHHHHHHhcc-CcccccCCccchh--------hhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccce
Confidence                 23445555554443 222  23333322        4555666666555 5666666666677777777766654


Q ss_pred             h
Q 014826          394 L  394 (418)
Q Consensus       394 l  394 (418)
                      +
T Consensus       352 i  352 (1255)
T KOG0444|consen  352 I  352 (1255)
T ss_pred             e
Confidence            4

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.80  E-value=2e-21  Score=171.74  Aligned_cols=227  Identities=22%  Similarity=0.256  Sum_probs=121.0

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE   89 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~   89 (418)
                      +..++.++..|.+|++.++.     +..  +|..+.++..++.+++++++ ..++|+.+..+..|+.|+++++.+.++|+
T Consensus        60 l~~dl~nL~~l~vl~~~~n~-----l~~--lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~el~~  131 (565)
T KOG0472|consen   60 LREDLKNLACLTVLNVHDNK-----LSQ--LPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNELKELPD  131 (565)
T ss_pred             ccHhhhcccceeEEEeccch-----hhh--CCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccceeecCc
Confidence            44456666677777777766     333  44446666666666666666 55566666666666666666666666666


Q ss_pred             hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCc----------------------ccccCCcccccccccce
Q 014826           90 TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTN----------------------SLRYMPVGIGRLTGLRT  147 (418)
Q Consensus        90 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------------------~~~~~~~~l~~l~~L~~  147 (418)
                      .++.+-.|..++..+|+ +..+|+++.++.+|..+++.+|.                      ..+.+|..++.+.+|..
T Consensus       132 ~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~  210 (565)
T KOG0472|consen  132 SIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL  210 (565)
T ss_pred             hHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence            66666666666666555 44455555555555555554442                      33444444444444444


Q ss_pred             ecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchh
Q 014826          148 LGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQ  227 (418)
Q Consensus       148 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  227 (418)
                      |++..+...         .+..++++..|+.++.....    +...........+++..|++..|..            .
T Consensus       211 LyL~~Nki~---------~lPef~gcs~L~Elh~g~N~----i~~lpae~~~~L~~l~vLDLRdNkl------------k  265 (565)
T KOG0472|consen  211 LYLRRNKIR---------FLPEFPGCSLLKELHVGENQ----IEMLPAEHLKHLNSLLVLDLRDNKL------------K  265 (565)
T ss_pred             HHhhhcccc---------cCCCCCccHHHHHHHhcccH----HHhhHHHHhcccccceeeecccccc------------c
Confidence            444443322         22244444444443332110    0111111223445556666655543            2


Q ss_pred             hhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCC
Q 014826          228 LLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCE  272 (418)
Q Consensus       228 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  272 (418)
                      ..+..+..+++|++||++.| ....+|..++++ +|+.|.+.+|+
T Consensus       266 e~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  266 EVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             cCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence            34555555666666676666 344556666666 66666666664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.73  E-value=5.1e-20  Score=178.42  Aligned_cols=104  Identities=23%  Similarity=0.363  Sum_probs=78.6

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE   93 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~   93 (418)
                      +.++.+|+.|++++|.     +.+  +|..+..+.+|++|+++.|. ....|...+++.+|++|+|.+|.+..+|..+..
T Consensus        41 ~~~~v~L~~l~lsnn~-----~~~--fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~  112 (1081)
T KOG0618|consen   41 VEKRVKLKSLDLSNNQ-----ISS--FPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISE  112 (1081)
T ss_pred             hhheeeeEEeeccccc-----ccc--CCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccchhhcCchhHHh
Confidence            4566779999999887     555  66667888889999998886 556677778888999999999988889988989


Q ss_pred             CCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826           94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLN  126 (418)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  126 (418)
                      +++|++|++++|. .+.+|.-+..+..+..+..
T Consensus       113 lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~  144 (1081)
T KOG0618|consen  113 LKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAA  144 (1081)
T ss_pred             hhcccccccchhc-cCCCchhHHhhhHHHHHhh
Confidence            9999999999888 5555544443333333333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.65  E-value=1e-18  Score=154.81  Aligned_cols=265  Identities=26%  Similarity=0.289  Sum_probs=187.7

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR  127 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  127 (418)
                      ..|..+.+++|. ...+.+.+.++.-|.+|++.++.+.++|..++.+..++.++.+++. ..++|..++.+.+|++++++
T Consensus        45 v~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   45 VDLQKLILSHND-LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             cchhhhhhccCc-hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhcc
Confidence            467778888877 4444445677888888888888888888888888888888888887 77788888888888888888


Q ss_pred             CCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccce
Q 014826          128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL  207 (418)
Q Consensus       128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  207 (418)
                      +|. ...+|+.++.+..+..++...+...        ...+.+.++                            ..+..+
T Consensus       123 ~n~-~~el~~~i~~~~~l~dl~~~~N~i~--------slp~~~~~~----------------------------~~l~~l  165 (565)
T KOG0472|consen  123 SNE-LKELPDSIGRLLDLEDLDATNNQIS--------SLPEDMVNL----------------------------SKLSKL  165 (565)
T ss_pred             ccc-eeecCchHHHHhhhhhhhccccccc--------cCchHHHHH----------------------------HHHHHh
Confidence            873 3567777887877777776555543        122222222                            233333


Q ss_pred             EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccc
Q 014826          208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLE  287 (418)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~  287 (418)
                      .+.++..            ...++..-+++.|++++...| .-+.+|..++.+.+|..|++..|.+. .+|.+.+|..|+
T Consensus       166 ~~~~n~l------------~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~  231 (565)
T KOG0472|consen  166 DLEGNKL------------KALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLK  231 (565)
T ss_pred             hccccch------------hhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHH
Confidence            3333322            122233233667777777777 55667888888888888888888554 667888888888


Q ss_pred             hhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecC
Q 014826          288 QLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSC  367 (418)
Q Consensus       288 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c  367 (418)
                      +++++.|. ++-++.+.                ...++++..|++++ .++++.|....        -+.+|++|+++++
T Consensus       232 Elh~g~N~-i~~lpae~----------------~~~L~~l~vLDLRd-Nklke~Pde~c--------lLrsL~rLDlSNN  285 (565)
T KOG0472|consen  232 ELHVGENQ-IEMLPAEH----------------LKHLNSLLVLDLRD-NKLKEVPDEIC--------LLRSLERLDLSNN  285 (565)
T ss_pred             HHHhcccH-HHhhHHHH----------------hcccccceeeeccc-cccccCchHHH--------HhhhhhhhcccCC
Confidence            88888776 55555442                23678888888888 67888876654        6788888888888


Q ss_pred             CCCCcCCccccCCCCccEEEeccCCc
Q 014826          368 YELKALPDHIHQTTTLKRLWILNCGP  393 (418)
Q Consensus       368 ~~l~~~~~~~~~~~~L~~L~l~~c~~  393 (418)
                       .++++|..++++ .|++|-+.|||.
T Consensus       286 -~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  286 -DISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             -ccccCCcccccc-eeeehhhcCCch
Confidence             588888878877 888888888883

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=2e-17  Score=160.65  Aligned_cols=273  Identities=22%  Similarity=0.242  Sum_probs=161.6

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE   89 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~   89 (418)
                      ||..+-.-..+..|++..|.    .+.. - -+++.+..+|+.|+++++. .+.+|..+..+++|+.|++++|.+..+|.
T Consensus        13 ip~~i~~~~~~~~ln~~~N~----~l~~-p-l~~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~i~~vp~   85 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNS----LLSR-P-LEFVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNYIRSVPS   85 (1081)
T ss_pred             cchhhccHHHHHhhhccccc----cccC-c-hHHhhheeeeEEeeccccc-cccCCchhhhHHHHhhcccchhhHhhCch
Confidence            55555555568888888887    3332 2 3446677779999999998 67788888899999999999999999999


Q ss_pred             hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCc-------
Q 014826           90 TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGR-------  162 (418)
Q Consensus        90 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------  162 (418)
                      ....+.+|+++.|.++. ...+|.++..+.+|+.|+++.|.+ ..+|..+..++.+..+...+|.........       
T Consensus        86 s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l  163 (1081)
T KOG0618|consen   86 SCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDL  163 (1081)
T ss_pred             hhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhh
Confidence            99999999999999998 888999999999999999999944 456666655555555444433110000000       


Q ss_pred             -----cccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCC---C----Cccccchhhhh
Q 014826          163 -----KACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGG---E----RRKNEDDQLLL  230 (418)
Q Consensus       163 -----~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~----~~~~~~~~~~~  230 (418)
                           .........++++  .+++++....       ...+..+.+|+.+...++......   .    ....+..-...
T Consensus       164 ~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~  234 (1081)
T KOG0618|consen  164 RLNVLGGSFLIDIYNLTH--QLDLRYNEME-------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL  234 (1081)
T ss_pred             hhhhcccchhcchhhhhe--eeecccchhh-------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee
Confidence                 0001111111111  1111111111       111222233333322222211000   0    00000000011


Q ss_pred             hhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccc
Q 014826          231 EALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGD  302 (418)
Q Consensus       231 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~  302 (418)
                      ..-....+|++++++.+. ...+|+|++.+++|+.++...|.++.....+...++|+.|.+..|. +++++.
T Consensus       235 ~~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~  304 (1081)
T KOG0618|consen  235 DVHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPP  304 (1081)
T ss_pred             ccccccccceeeecchhh-hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCC
Confidence            122235788888888884 4456788888999999988888775433334444555555555554 444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.56  E-value=2.9e-15  Score=138.65  Aligned_cols=273  Identities=19%  Similarity=0.157  Sum_probs=169.9

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccH---HHHHHHhccCCCccEEecCCCCCc------HHHHHhhccccccceee
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNA---EIVEELFRESTSLRALDVSQVSLP------TEILRNIKKLVHLRYLN   78 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~   78 (418)
                      .+.+..+..++.|+.++++++.     +++   ..++..+...+.++.++++++.+.      ..++..+.++++|++|+
T Consensus        13 ~~~~~~~~~l~~L~~l~l~~~~-----l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~   87 (319)
T cd00116          13 ERATELLPKLLCLQVLRLEGNT-----LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD   87 (319)
T ss_pred             cchHHHHHHHhhccEEeecCCC-----CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEE
Confidence            3355667788889999999998     433   235666778888999999988654      23456677788999999


Q ss_pred             eCCCCCc-cCchhhhcCC---CCcEEeccCccCccc----CChhhhcc-ccccEEeccCCcccc----cCCccccccccc
Q 014826           79 LRFPKIV-KLPETLCELY---NLEKLDISYCFNLKE----LPEGIGKL-INMKHLLNRGTNSLR----YMPVGIGRLTGL  145 (418)
Q Consensus        79 l~~~~l~-~l~~~~~~l~---~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~~l~~L  145 (418)
                      +++|.+. ..+..+..+.   +|++|++++|+....    +...+..+ ++|++|++++|.+..    .++..+..+.+|
T Consensus        88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L  167 (319)
T cd00116          88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL  167 (319)
T ss_pred             ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence            9999876 3444444444   499999999985532    22345566 899999999996653    234456677889


Q ss_pred             ceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccc
Q 014826          146 RTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNED  225 (418)
Q Consensus       146 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  225 (418)
                      ++|++.++...+.   ........+..+++|+.+++..+.............+..+++|+.|++++|....       ..
T Consensus       168 ~~L~l~~n~l~~~---~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-------~~  237 (319)
T cd00116         168 KELNLANNGIGDA---GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-------AG  237 (319)
T ss_pred             CEEECcCCCCchH---HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-------HH
Confidence            9999887765421   0112223344445666666655432222222233445667788888888776421       00


Q ss_pred             hhhhhhhC-CCCCCCcEEEEeeecCCCC----CchhhhcCCCccEEEeeCCCCCCC----CCC-CCCC-Cccchhccccc
Q 014826          226 DQLLLEAL-RPPLDLKELEIQFNRGNTV----FPSWMTSLTNLKSLGLSLCENCEQ----LPP-LGKL-PSLEQLFISYM  294 (418)
Q Consensus       226 ~~~~~~~l-~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~-l~~l-~~L~~L~L~~~  294 (418)
                      ...+...+ ...+.|++|++++|.+.+.    +...+..+++|+.+++++|.+...    +.. +... +.|+.+++.++
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            01111111 1346788888888765533    223344567788888888876643    111 2333 56777777665


Q ss_pred             c
Q 014826          295 S  295 (418)
Q Consensus       295 ~  295 (418)
                      +
T Consensus       318 ~  318 (319)
T cd00116         318 S  318 (319)
T ss_pred             C
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.53  E-value=2.9e-14  Score=142.23  Aligned_cols=112  Identities=22%  Similarity=0.216  Sum_probs=58.2

Q ss_pred             eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcE
Q 014826           20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEK   99 (418)
Q Consensus        20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~   99 (418)
                      -..|+++++.     ++.  +|..+.  ++|+.|++.+|++. .+|.   ..++|++|++++|.++.+|..   .++|+.
T Consensus       203 ~~~LdLs~~~-----Lts--LP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~  266 (788)
T PRK15387        203 NAVLNVGESG-----LTT--LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLE  266 (788)
T ss_pred             CcEEEcCCCC-----CCc--CCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCc---ccccce
Confidence            4456666665     333  332222  35666666666533 3332   235666666666666666532   345666


Q ss_pred             EeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826          100 LDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus       100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      |++.+|. +..+|..   ..+|+.|++++|. ...+|..   .++|+.|++.+|..
T Consensus       267 L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L  314 (788)
T PRK15387        267 LSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL  314 (788)
T ss_pred             eeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCcc
Confidence            6666665 3444432   2346666666663 3344432   24566666655543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.52  E-value=3.5e-15  Score=138.16  Aligned_cols=259  Identities=19%  Similarity=0.120  Sum_probs=160.3

Q ss_pred             EEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCcc-------Cchh
Q 014826           22 TLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIVK-------LPET   90 (418)
Q Consensus        22 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~-------l~~~   90 (418)
                      +|+|..+.     +++......+..+..|++|+++++.+.+.    ++..+...+++++|+++++.+..       ++..
T Consensus         2 ~l~L~~~~-----l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~   76 (319)
T cd00116           2 QLSLKGEL-----LKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG   76 (319)
T ss_pred             ccccccCc-----ccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHH
Confidence            46676665     54444667788888899999999986433    55566778889999999887652       3355


Q ss_pred             hhcCCCCcEEeccCccCcccCChhhhcccc---ccEEeccCCcccc----cCCcccccc-cccceecceeecCCCCCCCc
Q 014826           91 LCELYNLEKLDISYCFNLKELPEGIGKLIN---MKHLLNRGTNSLR----YMPVGIGRL-TGLRTLGEFRVSAGGDVDGR  162 (418)
Q Consensus        91 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~  162 (418)
                      +..+++|+.|++++|.+....+..+..+.+   |++|++++|....    .+...+..+ ++|+.|++.+|......   
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---  153 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS---  153 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH---
Confidence            677889999999999866555555555555   9999999986542    233445566 78999998888755210   


Q ss_pred             cccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEE
Q 014826          163 KACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKEL  242 (418)
Q Consensus       163 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  242 (418)
                      .......+..++.|+.+++....-...........+..+++|+.|++++|....       .....+...+..+++|++|
T Consensus       154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~~~~~~~L~~L  226 (319)
T cd00116         154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD-------EGASALAETLASLKSLEVL  226 (319)
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh-------HHHHHHHHHhcccCCCCEE
Confidence            112223344455566655554322111111122234445677888877775421       0112334455667778888


Q ss_pred             EEeeecCCCCCchhhh-c----CCCccEEEeeCCCCCCCC----C-CCCCCCccchhcccccc
Q 014826          243 EIQFNRGNTVFPSWMT-S----LTNLKSLGLSLCENCEQL----P-PLGKLPSLEQLFISYMS  295 (418)
Q Consensus       243 ~l~~~~~~~~~~~~l~-~----~~~L~~L~l~~~~~~~~~----~-~l~~l~~L~~L~L~~~~  295 (418)
                      ++++|.+.+.....+. .    .+.|++|++.+|.+...-    . .+..+++|+.+++++|.
T Consensus       227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            8877765543222222 1    367788888777654211    1 14445777777777776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=8.2e-16  Score=136.27  Aligned_cols=137  Identities=18%  Similarity=0.169  Sum_probs=99.6

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCC-CCCccCc
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRF-PKIVKLP   88 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~   88 (418)
                      +|..+..  .-..+.|..|+     |+. +.+..|+.+++||+|+|++|.+...-|++|.+++.|..|-+.+ |+|+.+|
T Consensus        61 VP~~LP~--~tveirLdqN~-----I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   61 VPANLPP--ETVEIRLDQNQ-----ISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             CcccCCC--cceEEEeccCC-----ccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence            4444443  45566777776     555 4456788888999999998886666688888888877776665 7788888


Q ss_pred             -hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCc-ccccccccceecceeecC
Q 014826           89 -ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        89 -~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~  155 (418)
                       ..|.++..|+.|.+.-|+........+..+++|..|.+.+| ....++. .+..+..++++.+..+.+
T Consensus       133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcc
Confidence             56788888888888888855555567888888888888888 4455555 567777788776655543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.46  E-value=2.9e-14  Score=145.09  Aligned_cols=108  Identities=31%  Similarity=0.325  Sum_probs=62.6

Q ss_pred             ccCCCccEEecCCCC--CcHHHHHhhccccccceeeeCCCC-CccCchhhhcCCCCcEEeccCccCcccCChhhhccccc
Q 014826           45 RESTSLRALDVSQVS--LPTEILRNIKKLVHLRYLNLRFPK-IVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINM  121 (418)
Q Consensus        45 ~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  121 (418)
                      ..+++|+.|-+.++.  +.....+.|..++.|++||+++|. +..+|..++.+-+||+|+++++. +..+|.+++++.+|
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKL  620 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhh
Confidence            344456666666653  122222335556666666666555 55666666666666666666666 55666666666666


Q ss_pred             cEEeccCCcccccCCcccccccccceecceee
Q 014826          122 KHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRV  153 (418)
Q Consensus       122 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  153 (418)
                      .+|++..+.....+|..+..+++|++|.+...
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeecc
Confidence            66666665444444444455666666665443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.45  E-value=3.8e-13  Score=134.34  Aligned_cols=121  Identities=22%  Similarity=0.172  Sum_probs=87.5

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+..  +|+.|++++|.     ++.  +|.   ..++|++|++++|.+. .+|..   .++|+.|++++|.+..+
T Consensus       214 tsLP~~l~~--~L~~L~L~~N~-----Lt~--LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~L  277 (788)
T PRK15387        214 TTLPDCLPA--HITTLVIPDNN-----LTS--LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTHL  277 (788)
T ss_pred             CcCCcchhc--CCCEEEccCCc-----CCC--CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchhhh
Confidence            357776653  89999999998     554  443   3578999999999854 45532   46899999999998888


Q ss_pred             chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826           88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      |..   ..+|+.|++++|. +..+|..   .++|+.|++++|.+ ..+|...   .+|+.|.+.+|..
T Consensus       278 p~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L~Ls~N~L  334 (788)
T PRK15387        278 PAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQL  334 (788)
T ss_pred             hhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCcc-ccCCCCc---ccccccccccCcc
Confidence            764   3578899999998 6667752   47899999999954 3455422   3466666655443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.41  E-value=1.7e-13  Score=139.49  Aligned_cols=112  Identities=31%  Similarity=0.398  Sum_probs=95.1

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE   93 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~   93 (418)
                      -..++.|++|-+.++.    .--..+..++|..++.|++||+++|.-.+.+|+.++.+-+||+|+++++.+..+|..+.+
T Consensus       541 ~~~~~~L~tLll~~n~----~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~  616 (889)
T KOG4658|consen  541 SSENPKLRTLLLQRNS----DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN  616 (889)
T ss_pred             CCCCCccceEEEeecc----hhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence            3466789999999885    201224567799999999999999876788999999999999999999999999999999


Q ss_pred             CCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826           94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  129 (418)
                      +..|.+|++..+.....+|.....|++|++|.+...
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             HHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            999999999998866666666677999999999765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.39  E-value=4.6e-13  Score=134.36  Aligned_cols=228  Identities=18%  Similarity=0.230  Sum_probs=127.6

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR  127 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  127 (418)
                      ++|+.|++++|.+. .+|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|. +..+|..+.  .+|+.|+++
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLF  270 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECc
Confidence            35666666666533 3443332  366666666666666665432  356666666666 445555443  356666666


Q ss_pred             CCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccce
Q 014826          128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL  207 (418)
Q Consensus       128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  207 (418)
                      +|.+ ..+|..+.  ++|+.|++.+|...                             .++.   .    +  .++|+.|
T Consensus       271 ~N~L-~~LP~~l~--~sL~~L~Ls~N~Lt-----------------------------~LP~---~----l--p~sL~~L  309 (754)
T PRK15370        271 HNKI-SCLPENLP--EELRYLSVYDNSIR-----------------------------TLPA---H----L--PSGITHL  309 (754)
T ss_pred             CCcc-CccccccC--CCCcEEECCCCccc-----------------------------cCcc---c----c--hhhHHHH
Confidence            6533 34554442  35666655544322                             0110   0    0  1356666


Q ss_pred             EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccc
Q 014826          208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLE  287 (418)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~  287 (418)
                      ++++|....            ++..+  .++|+.|++++|.+. .+|..+  .++|+.|++++|.+.. +|. .-.++|+
T Consensus       310 ~Ls~N~Lt~------------LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~~-LP~-~lp~~L~  370 (754)
T PRK15370        310 NVQSNSLTA------------LPETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQITV-LPE-TLPPTIT  370 (754)
T ss_pred             HhcCCcccc------------CCccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCCc-CCh-hhcCCcC
Confidence            776665421            11111  367888888888544 456544  3688889998887653 443 1136788


Q ss_pred             hhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecC
Q 014826          288 QLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSC  367 (418)
Q Consensus       288 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c  367 (418)
                      .|++++|. +..+|..                   -.++|+.|++++ .++..++....    .....++.+..|++.++
T Consensus       371 ~LdLs~N~-Lt~LP~~-------------------l~~sL~~LdLs~-N~L~~LP~sl~----~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        371 TLDVSRNA-LTNLPEN-------------------LPAALQIMQASR-NNLVRLPESLP----HFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             EEECCCCc-CCCCCHh-------------------HHHHHHHHhhcc-CCcccCchhHH----HHhhcCCCccEEEeeCC
Confidence            88888887 5555432                   123678888887 45666553322    00123577888888887


Q ss_pred             C
Q 014826          368 Y  368 (418)
Q Consensus       368 ~  368 (418)
                      +
T Consensus       426 p  426 (754)
T PRK15370        426 P  426 (754)
T ss_pred             C
Confidence            5

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.35  E-value=1.3e-14  Score=114.52  Aligned_cols=108  Identities=26%  Similarity=0.264  Sum_probs=71.5

Q ss_pred             hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccE
Q 014826           44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKH  123 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  123 (418)
                      +-++.+.+.|.+++|+ ...+|..+.++.+|++|+++.|.++++|..++.+++|+.|+++-++ ...+|.+++.++-|+.
T Consensus        29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhh
Confidence            4455666777777776 4455566777777777777777777777777777777777777766 6666777777777777


Q ss_pred             EeccCCcccc-cCCcccccccccceecceee
Q 014826          124 LLNRGTNSLR-YMPVGIGRLTGLRTLGEFRV  153 (418)
Q Consensus       124 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~  153 (418)
                      |++.+|+..+ .+|..|..++.|+.|.+.++
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dn  137 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDN  137 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCC
Confidence            7777665433 35555555555555554443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.34  E-value=3.5e-14  Score=126.04  Aligned_cols=265  Identities=19%  Similarity=0.143  Sum_probs=157.9

Q ss_pred             ccccCCCCCc-cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCC-CCCcHHHH-Hhhccccccceeee
Q 014826            3 IFSKGASLPV-STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQ-VSLPTEIL-RNIKKLVHLRYLNL   79 (418)
Q Consensus         3 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~-~~~~~l~~L~~L~l   79 (418)
                      .++...+||. .|+.+++||.|||+.|.     |+. +.|..|..++.|..|.+.+ |+ +.++| ..|.++..|+-|.+
T Consensus        75 dqN~I~~iP~~aF~~l~~LRrLdLS~N~-----Is~-I~p~AF~GL~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   75 DQNQISSIPPGAFKTLHRLRRLDLSKNN-----ISF-IAPDAFKGLASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ccCCcccCChhhccchhhhceecccccc-----hhh-cChHhhhhhHhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHhc
Confidence            3455556665 78999999999999998     666 6788899999999999988 56 55665 45899999999999


Q ss_pred             CCCCCccCc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCccccc------------CCccccccccc
Q 014826           80 RFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSLRY------------MPVGIGRLTGL  145 (418)
Q Consensus        80 ~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~------------~~~~l~~l~~L  145 (418)
                      .-|.+.-++ +.+..+++|..|.+..+. ...++. .+..+..++.+.+..|.++..            .|..++.....
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            999888555 778899999999999988 555654 678889999999887753321            11222222111


Q ss_pred             ceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccc
Q 014826          146 RTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNED  225 (418)
Q Consensus       146 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  225 (418)
                      .-..+.+........+...      -.+..+..--..  +..++ .......+.++++|+.+++++|.++          
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~------c~~esl~s~~~~--~d~~d-~~cP~~cf~~L~~L~~lnlsnN~i~----------  287 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFL------CSLESLPSRLSS--EDFPD-SICPAKCFKKLPNLRKLNLSNNKIT----------  287 (498)
T ss_pred             chHHHHHHHhcccchhhhh------hhHHhHHHhhcc--ccCcC-CcChHHHHhhcccceEeccCCCccc----------
Confidence            1112222221110000000      001111110000  00000 0111223566677777777777643          


Q ss_pred             hhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccc
Q 014826          226 DQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMS  295 (418)
Q Consensus       226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~  295 (418)
                       .....++....++++|.+..|.+...-...+.++.+|+.|+|.+|+++...|. +..+..|..|.+-.|+
T Consensus       288 -~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  288 -RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             -hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence             33334455566666666666644333333444666666677766666655444 5555566666655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.33  E-value=1.1e-13  Score=123.88  Aligned_cols=292  Identities=16%  Similarity=0.127  Sum_probs=149.7

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH--HHHhhccccccceeeeCCCC-Ccc--Cchhhhc
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE--ILRNIKKLVHLRYLNLRFPK-IVK--LPETLCE   93 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~-l~~--l~~~~~~   93 (418)
                      .||.|.++|++    .+.+..+..+..+|++++.|++.++..+++  ..+.-..|++|++|++..|. ++.  +......
T Consensus       139 ~lk~LSlrG~r----~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  139 FLKELSLRGCR----AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             ccccccccccc----cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            67778888877    666666777777788888888877753332  22333567778887777654 442  2233446


Q ss_pred             CCCCcEEeccCccCccc--CChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccccccc
Q 014826           94 LYNLEKLDISYCFNLKE--LPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLK  171 (418)
Q Consensus        94 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  171 (418)
                      +++|+++++++|..+..  +-....++..++++...+|                        ...      ....+..  
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC------------------------~e~------~le~l~~--  262 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC------------------------LEL------ELEALLK--  262 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc------------------------ccc------cHHHHHH--
Confidence            77777777777763322  1111223333443333333                        111      0000000  


Q ss_pred             CCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCC
Q 014826          172 NLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNT  251 (418)
Q Consensus       172 ~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  251 (418)
                                               .-..+..+-.+++..|...         .+..++..-..+..|+.++.+.+...+
T Consensus       263 -------------------------~~~~~~~i~~lnl~~c~~l---------TD~~~~~i~~~c~~lq~l~~s~~t~~~  308 (483)
T KOG4341|consen  263 -------------------------AAAYCLEILKLNLQHCNQL---------TDEDLWLIACGCHALQVLCYSSCTDIT  308 (483)
T ss_pred             -------------------------HhccChHhhccchhhhccc---------cchHHHHHhhhhhHhhhhcccCCCCCc
Confidence                                     0011111222222222111         222233444445666666666553222


Q ss_pred             C-Cchhhh-cCCCccEEEeeCCCCCCCCCC---CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCc
Q 014826          252 V-FPSWMT-SLTNLKSLGLSLCENCEQLPP---LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPK  326 (418)
Q Consensus       252 ~-~~~~l~-~~~~L~~L~l~~~~~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (418)
                      . ....++ ++++|+.+.+..|+...+...   -.+++.|+.+++.+|..+.+.  .....             ...++.
T Consensus       309 d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl-------------s~~C~~  373 (483)
T KOG4341|consen  309 DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL-------------SRNCPR  373 (483)
T ss_pred             hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh-------------ccCCch
Confidence            2 222333 567777777777764333222   235677777777776533222  11111             336677


Q ss_pred             ccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCC-ccccCCCCccEEEeccCCchhccc
Q 014826          327 LKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALP-DHIHQTTTLKRLWILNCGPLGERY  398 (418)
Q Consensus       327 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~  398 (418)
                      |+.+.+++|..+++-.+.....   ...+...|+.+++++|+.+++.. ..+..+++|+.+++.+|..+.+..
T Consensus       374 lr~lslshce~itD~gi~~l~~---~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSS---SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhh---ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence            7777777776666553322211   11255667777777777665332 345557777777777777665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.32  E-value=4e-12  Score=127.72  Aligned_cols=126  Identities=21%  Similarity=0.334  Sum_probs=92.4

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  +.|+.|+|++|.     ++.  +|..+  ..+|++|++++|.+. .+|..+.  .+|+.|++++|.+..+
T Consensus       191 tsLP~~Ip--~~L~~L~Ls~N~-----Lts--LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~L  256 (754)
T PRK15370        191 TTIPACIP--EQITTLILDNNE-----LKS--LPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITEL  256 (754)
T ss_pred             CcCCcccc--cCCcEEEecCCC-----CCc--CChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcC
Confidence            34666554  489999999998     554  44323  358999999999854 5555442  4799999999999999


Q ss_pred             chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826           88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      |..+.  .+|+.|++++|. +..+|..+.  ++|+.|++++|.+ ..+|..+.  ++|+.|++.+|..
T Consensus       257 P~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~L  316 (754)
T PRK15370        257 PERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNSL  316 (754)
T ss_pred             ChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCcc
Confidence            87664  589999999988 557776553  5899999999954 45665443  4677777766554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=5.5e-14  Score=110.96  Aligned_cols=153  Identities=22%  Similarity=0.279  Sum_probs=117.4

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE   93 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~   93 (418)
                      +-.+.+...|.|+.|+     ++.  .|..+..+.+|++|++.+|+ ..++|..++.+++|+.|+++.|++..+|..|+.
T Consensus        29 Lf~~s~ITrLtLSHNK-----l~~--vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNK-----LTV--VPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             ccchhhhhhhhcccCc-----eee--cCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence            3466677888888887     555  45458888899999999888 778888888899999999998888888888999


Q ss_pred             CCCCcEEeccCccCc-ccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826           94 LYNLEKLDISYCFNL-KELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN  172 (418)
Q Consensus        94 l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  172 (418)
                      ++.|+.|++.++... ..+|..+-.|..|+.|.+++|.+ +.+|..++++++|+.|.+.++...        .....+..
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll--------~lpkeig~  171 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL--------SLPKEIGD  171 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh--------hCcHHHHH
Confidence            999999999888744 35677777788888888888844 567888888888888887766543        34445566


Q ss_pred             Ccccccccccc
Q 014826          173 LEHLQVCGIRR  183 (418)
Q Consensus       173 L~~L~~l~~~~  183 (418)
                      +..|+.+++..
T Consensus       172 lt~lrelhiqg  182 (264)
T KOG0617|consen  172 LTRLRELHIQG  182 (264)
T ss_pred             HHHHHHHhccc
Confidence            66666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=4.2e-12  Score=111.42  Aligned_cols=243  Identities=21%  Similarity=0.101  Sum_probs=145.6

Q ss_pred             HhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc----cCch-------hhhcCCCCcEEeccCccC
Q 014826           43 LFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV----KLPE-------TLCELYNLEKLDISYCFN  107 (418)
Q Consensus        43 ~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~----~l~~-------~~~~l~~L~~L~l~~~~~  107 (418)
                      .+.....++.+++++|.|...    +...+.+.++|+..++++-..+    ++|.       .+..+++|++++|++|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            345555566666666554322    3333444555555555543211    2222       233455666666666654


Q ss_pred             cccCChh----hhccccccEEeccCCcccccC-------------CcccccccccceecceeecCCCCCCCccccccccc
Q 014826          108 LKELPEG----IGKLINMKHLLNRGTNSLRYM-------------PVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESL  170 (418)
Q Consensus       108 ~~~~~~~----l~~l~~L~~L~l~~~~~~~~~-------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  170 (418)
                      ....+..    +.++.+|++|.+++|.....-             ...+..-+.|+++...+|...+.   +-......+
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~---ga~~~A~~~  181 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG---GATALAEAF  181 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---cHHHHHHHH
Confidence            4333322    345566666666666332110             11233345677776666654421   111222344


Q ss_pred             cCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCC
Q 014826          171 KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGN  250 (418)
Q Consensus       171 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  250 (418)
                      ...+.|+.+.+......+.-..+....+..|++|+.|++..|..+.       .....+...+..+++|+.+.+++|.+.
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-------egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-------EGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-------HHHHHHHHHhcccchheeecccccccc
Confidence            5556666666666555554446777788899999999999887641       122344556778899999999999777


Q ss_pred             CCCchhhh-----cCCCccEEEeeCCCCCCCCC-----CCCCCCccchhcccccc
Q 014826          251 TVFPSWMT-----SLTNLKSLGLSLCENCEQLP-----PLGKLPSLEQLFISYMS  295 (418)
Q Consensus       251 ~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~L~~~~  295 (418)
                      .....++.     ..|+|++|.+.+|.++....     .....|.|+.|+|.+|.
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            66554443     68999999999998765432     14558999999999998

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.17  E-value=1.5e-12  Score=116.72  Aligned_cols=288  Identities=19%  Similarity=0.124  Sum_probs=189.9

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH-HHH-hhccccccceeeeCCCC-Cc-
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE-ILR-NIKKLVHLRYLNLRFPK-IV-   85 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~-~~~~l~~L~~L~l~~~~-l~-   85 (418)
                      +...-+.||++.+|.+.+|.    .+++..+.++-..|++|+.|++..|..+++ ... ....|++|++|+++||. +. 
T Consensus       156 lrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~  231 (483)
T KOG4341|consen  156 LRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG  231 (483)
T ss_pred             hhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence            33445699999999999999    899988889888999999999999754443 333 34679999999999998 44 


Q ss_pred             -cCchhhhcCCCCcEEeccCccCccc--CChhhhccccccEEeccCCcccccCC--cccccccccceecceeecCCCCCC
Q 014826           86 -KLPETLCELYNLEKLDISYCFNLKE--LPEGIGKLINMKHLLNRGTNSLRYMP--VGIGRLTGLRTLGEFRVSAGGDVD  160 (418)
Q Consensus        86 -~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~  160 (418)
                       .+.....++..++.+.+++|.-...  +...=+.++-+.++++..|.......  ..-..+..|+.++..++...+   
T Consensus       232 ~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~---  308 (483)
T KOG4341|consen  232 NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT---  308 (483)
T ss_pred             CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc---
Confidence             3444566777788888888762221  00111234556677766774333211  112357788888887776542   


Q ss_pred             Cccccccccc-cCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCC
Q 014826          161 GRKACRLESL-KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDL  239 (418)
Q Consensus       161 ~~~~~~~~~l-~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L  239 (418)
                         +..+-.+ .+..+|+.+.+..+..+.+.  .+...-++++.|+.+++..+...         .+..+.....+|+.|
T Consensus       309 ---d~~l~aLg~~~~~L~~l~l~~c~~fsd~--~ft~l~rn~~~Le~l~~e~~~~~---------~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  309 ---DEVLWALGQHCHNLQVLELSGCQQFSDR--GFTMLGRNCPHLERLDLEECGLI---------TDGTLASLSRNCPRL  374 (483)
T ss_pred             ---hHHHHHHhcCCCceEEEeccccchhhhh--hhhhhhcCChhhhhhccccccee---------hhhhHhhhccCCchh
Confidence               2233232 23455555555555544432  23334578899999999887653         333345555689999


Q ss_pred             cEEEEeeecCCCCC-chhh----hcCCCccEEEeeCCCCCCCCC--CCCCCCccchhcccccccceeccccccCCCCCcc
Q 014826          240 KELEIQFNRGNTVF-PSWM----TSLTNLKSLGLSLCENCEQLP--PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRH  312 (418)
Q Consensus       240 ~~L~l~~~~~~~~~-~~~l----~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~  312 (418)
                      +.+.+++|...... -..+    ..+..+.++.+.+|+.+.+..  .+..+++|+.+++.+|..+..-+...+       
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~-------  447 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF-------  447 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH-------
Confidence            99999988743332 1222    267789999999998665432  277899999999999987655444433       


Q ss_pred             CCCCCccccccCCcccccccc
Q 014826          313 DSSSSSLVIIAFPKLKSLRIE  333 (418)
Q Consensus       313 ~~~~~~~~~~~~~~L~~L~l~  333 (418)
                              ...+|+++...+-
T Consensus       448 --------~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  448 --------ATHLPNIKVHAYF  460 (483)
T ss_pred             --------HhhCccceehhhc
Confidence                    3467777766443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=4.6e-11  Score=104.99  Aligned_cols=246  Identities=17%  Similarity=0.121  Sum_probs=173.1

Q ss_pred             cccccceeeEEeecCCCCCCCCccH---HHHHHHhccCCCccEEecCCCC---CcHHHHHh-------hccccccceeee
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNA---EIVEELFRESTSLRALDVSQVS---LPTEILRN-------IKKLVHLRYLNL   79 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~-------~~~l~~L~~L~l   79 (418)
                      .......+..++|+||.     ++.   +.+...+.+-++|++.+++.-.   ....+|+.       +..+++|++|++
T Consensus        25 ~~~~~~s~~~l~lsgnt-----~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL   99 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNT-----FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL   99 (382)
T ss_pred             HhcccCceEEEeccCCc-----hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence            44577899999999998     333   4567778888999999998653   23344544       456789999999


Q ss_pred             CCCCCc-----cCchhhhcCCCCcEEeccCccCcccCCh-h-------------hhccccccEEeccCCccccc----CC
Q 014826           80 RFPKIV-----KLPETLCELYNLEKLDISYCFNLKELPE-G-------------IGKLINMKHLLNRGTNSLRY----MP  136 (418)
Q Consensus        80 ~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~-------------l~~l~~L~~L~l~~~~~~~~----~~  136 (418)
                      |+|.++     .+.+.+..+..|+.|.+.+|. ++.... .             .++-++|+.+..++|..-..    +.
T Consensus       100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen  100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             cccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence            999977     223556789999999999998 433221 1             23457899999998854322    34


Q ss_pred             cccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccC
Q 014826          137 VGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKE  216 (418)
Q Consensus       137 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  216 (418)
                      ..+...+.|+.+.+..+.+..   .........+..+++|+++++++..-....+..+...+...++|+.+++.+|.+..
T Consensus       179 ~~~~~~~~leevr~~qN~I~~---eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~  255 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRP---EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN  255 (382)
T ss_pred             HHHHhccccceEEEecccccC---chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence            456677888888887776652   11223445678889999998887654444445556677788999999999997642


Q ss_pred             CCCCccccchhhhhhhC-CCCCCCcEEEEeeecCCCCCch----hhhcCCCccEEEeeCCCCC
Q 014826          217 GGERRKNEDDQLLLEAL-RPPLDLKELEIQFNRGNTVFPS----WMTSLTNLKSLGLSLCENC  274 (418)
Q Consensus       217 ~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~  274 (418)
                      .+       ...+...+ ...+.|+.+.+.+|.++.....    .+...+.|..|++.+|.+-
T Consensus       256 ~G-------a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  256 EG-------AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cc-------HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            11       22333333 4579999999999977655322    2336899999999999873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=2.6e-10  Score=93.80  Aligned_cols=129  Identities=22%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhc-cCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhh-
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFR-ESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETL-   91 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~-   91 (418)
                      +-++.+++.|+|.++.     ++.  +.. +. .+.+|+.|++++|.+. .+ +.+..+++|++|++++|.++.+.+.+ 
T Consensus        15 ~~n~~~~~~L~L~~n~-----I~~--Ie~-L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~   84 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQ-----IST--IEN-LGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSISEGLD   84 (175)
T ss_dssp             ----------------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHH
T ss_pred             cccccccccccccccc-----ccc--ccc-hhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCccccchH
Confidence            4466678888888887     554  333 44 5778888888888744 33 35677888888888888888886544 


Q ss_pred             hcCCCCcEEeccCccCcccCC--hhhhccccccEEeccCCccccc---CCcccccccccceecceee
Q 014826           92 CELYNLEKLDISYCFNLKELP--EGIGKLINMKHLLNRGTNSLRY---MPVGIGRLTGLRTLGEFRV  153 (418)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~  153 (418)
                      ..+++|+.|++++|+ +..+.  ..++.+++|+.|++.+|+....   -...+..+|+|+.|+-...
T Consensus        85 ~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   85 KNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             HhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            368888888888887 33322  3467788888888888865533   1234567777777775443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=3e-10  Score=102.72  Aligned_cols=137  Identities=17%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH--HHHhhccccccceeeeCCCCCccCc--hh
Q 014826           15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE--ILRNIKKLVHLRYLNLRFPKIVKLP--ET   90 (418)
Q Consensus        15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~l~--~~   90 (418)
                      +++.+|+...|.++.     +......+....|++++.|+|++|-+...  +......+++|+.|+++.|.+...-  ..
T Consensus       118 sn~kkL~~IsLdn~~-----V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYR-----VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT  192 (505)
T ss_pred             hhHHhhhheeecCcc-----ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence            578889999999887     44312225678899999999999865433  4455678999999999999865322  12


Q ss_pred             hhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           91 LCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        91 ~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      -..+++|+.|.++.|.+.. ++...+..+|+|+.|.+.+|.....-......+..|+.|++.++...
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence            2368889999999998553 33444567899999999988532222233345678889998888765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=3.2e-10  Score=97.68  Aligned_cols=141  Identities=19%  Similarity=0.246  Sum_probs=100.5

Q ss_pred             CCccccccc-eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC-CccC
Q 014826           10 LPVSTRRVK-RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK-IVKL   87 (418)
Q Consensus        10 ~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l   87 (418)
                      +.+.++-++ +|++|||+...     ++...+..+++.|.+|+.|.+.+.++.+.+...+.+-.+|+.|+++.|. +++.
T Consensus       176 lae~~~~frsRlq~lDLS~s~-----it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n  250 (419)
T KOG2120|consen  176 LAEHFSPFRSRLQHLDLSNSV-----ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN  250 (419)
T ss_pred             hhhhhhhhhhhhHHhhcchhh-----eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh
Confidence            444555444 78999999876     7777788888999999999999998777777778888899999998876 6643


Q ss_pred             c--hhhhcCCCCcEEeccCccCcccCC-hhhhc-cccccEEeccCCcc---cccCCcccccccccceecceeecC
Q 014826           88 P--ETLCELYNLEKLDISYCFNLKELP-EGIGK-LINMKHLLNRGTNS---LRYMPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        88 ~--~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~-l~~L~~L~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      .  -.+..+..|..|++++|....+.. ..++. -++|+.|+++++..   ...+..-..++++|.+|++.++.-
T Consensus       251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~  325 (419)
T KOG2120|consen  251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM  325 (419)
T ss_pred             HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence            3  456788899999999998655432 22333 36788888888631   111222234677788887766543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=9.4e-10  Score=99.57  Aligned_cols=206  Identities=17%  Similarity=0.051  Sum_probs=103.9

Q ss_pred             hccCCCccEEecCCCCCcHHHH--HhhccccccceeeeCCCCCc---cCchhhhcCCCCcEEeccCccCcccCChh-hhc
Q 014826           44 FRESTSLRALDVSQVSLPTEIL--RNIKKLVHLRYLNLRFPKIV---KLPETLCELYNLEKLDISYCFNLKELPEG-IGK  117 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~  117 (418)
                      -+++.+|++..|+++. ++..+  .....|++++.|+++.|-+.   .+......+|+|+.|+++.|+...-.... -.-
T Consensus       117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            3456666666666665 32222  24456666677777666544   33344556666666666666532211111 113


Q ss_pred             cccccEEeccCCccccc-CCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhh
Q 014826          118 LINMKHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRL  196 (418)
Q Consensus       118 l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~  196 (418)
                      +++|+.|.+++|.+.-. +-..+..+++|+.|.+..|...       ......                           
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-------~~~~~~---------------------------  241 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-------LIKATS---------------------------  241 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-------ceecch---------------------------
Confidence            45566666666643311 2222234455555555444211       000000                           


Q ss_pred             hcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC-Cchh-----hhcCCCccEEEeeC
Q 014826          197 ELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV-FPSW-----MTSLTNLKSLGLSL  270 (418)
Q Consensus       197 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~-----l~~~~~L~~L~l~~  270 (418)
                       ..-.+.|++|++++|...          +-........++.|..|.++.+.+... +|+.     ...+++|+.|++..
T Consensus       242 -~~i~~~L~~LdLs~N~li----------~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  242 -TKILQTLQELDLSNNNLI----------DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             -hhhhhHHhhccccCCccc----------ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence             011245666777666542          111123344566677777766643332 2332     23677788888887


Q ss_pred             CCC--CCCCCCCCCCCccchhcccccc
Q 014826          271 CEN--CEQLPPLGKLPSLEQLFISYMS  295 (418)
Q Consensus       271 ~~~--~~~~~~l~~l~~L~~L~L~~~~  295 (418)
                      |++  ...+..+..+++|++|.+..+.
T Consensus       311 N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  311 NNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             Cccccccccchhhccchhhhhhccccc
Confidence            766  3333335566777777766655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.80  E-value=2.9e-09  Score=87.59  Aligned_cols=133  Identities=23%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             hccCCCccEEecCCCCCcHHHHHhhc-cccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhh-hccccc
Q 014826           44 FRESTSLRALDVSQVSLPTEILRNIK-KLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGI-GKLINM  121 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L  121 (418)
                      +.++..+++|+|.++.+. .+ +.++ .+.+|+.|++++|.++.+. .+..+++|+.|++++|+ +..+...+ ..+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcC
Confidence            566778999999999844 34 3455 5789999999999999885 57789999999999999 66676555 468999


Q ss_pred             cEEeccCCccccc-CCcccccccccceecceeecCCCCCCCccccccccccCCcccccccc
Q 014826          122 KHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGI  181 (418)
Q Consensus       122 ~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~  181 (418)
                      ++|++++|.+... ....+..+++|+.|++.+|+... ...+....+..+|.|+.|..-.+
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEET
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEc
Confidence            9999999954332 22456788999999998887652 12333344555555555444333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=9.4e-10  Score=94.83  Aligned_cols=181  Identities=18%  Similarity=0.063  Sum_probs=100.1

Q ss_pred             cceeeeCCCCCc--cCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccC--Ccccccccccceec
Q 014826           74 LRYLNLRFPKIV--KLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYM--PVGIGRLTGLRTLG  149 (418)
Q Consensus        74 L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~  149 (418)
                      |++||++...++  .+...+..|.+|+.|.+.+.+..+.+...+++-.+|+.|+++.|......  .-.+..|+.|+.|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            666666665544  44445556666666666666655555555666666666666655322221  11234455555555


Q ss_pred             ceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhh
Q 014826          150 EFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLL  229 (418)
Q Consensus       150 l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  229 (418)
                      +..|...                               ..........+  -++|..|+++++....        ....+
T Consensus       267 lsWc~l~-------------------------------~~~Vtv~V~hi--se~l~~LNlsG~rrnl--------~~sh~  305 (419)
T KOG2120|consen  267 LSWCFLF-------------------------------TEKVTVAVAHI--SETLTQLNLSGYRRNL--------QKSHL  305 (419)
T ss_pred             chHhhcc-------------------------------chhhhHHHhhh--chhhhhhhhhhhHhhh--------hhhHH
Confidence            5544433                               22222222222  2567777777664321        22233


Q ss_pred             hhhCCCCCCCcEEEEeeecCCC-CCchhhhcCCCccEEEeeCCCCCC--CCCCCCCCCccchhcccccc
Q 014826          230 LEALRPPLDLKELEIQFNRGNT-VFPSWMTSLTNLKSLGLSLCENCE--QLPPLGKLPSLEQLFISYMS  295 (418)
Q Consensus       230 ~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~L~~~~  295 (418)
                      ..-.+.|++|.+||+++|.... .....+..++-|++|.++.|....  .+-.+...|.|.+|++.||.
T Consensus       306 ~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  306 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            3334568888888888774322 233345578888888888885321  12236778888888888874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.62  E-value=1.4e-09  Score=101.64  Aligned_cols=130  Identities=28%  Similarity=0.321  Sum_probs=102.4

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCC
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELY   95 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~   95 (418)
                      .+..-...|++.|+     +..  +|..+..|..|+.+.++.|. ...+|..+..+..|++|+++.|.+..+|..+..++
T Consensus        73 ~ltdt~~aDlsrNR-----~~e--lp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp  144 (722)
T KOG0532|consen   73 DLTDTVFADLSRNR-----FSE--LPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP  144 (722)
T ss_pred             cccchhhhhccccc-----ccc--CchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc
Confidence            44555667777777     454  66667888888888888876 55677778888889999999988888888787776


Q ss_pred             CCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           96 NLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        96 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                       |+.|-+++|+ ++.+|..++..++|.+|+.+.| -+..+|..++.+.+|+.|++..+...
T Consensus       145 -Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  145 -LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             -ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh
Confidence             8888888888 7888888888888999988888 45667888888888888888777643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.62  E-value=2.1e-08  Score=85.59  Aligned_cols=226  Identities=20%  Similarity=0.117  Sum_probs=121.7

Q ss_pred             hccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc----cCch-------hhhcCCCCcEEeccCccCc
Q 014826           44 FRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV----KLPE-------TLCELYNLEKLDISYCFNL  108 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~----~l~~-------~~~~l~~L~~L~l~~~~~~  108 (418)
                      +.-+..+..++|+||.|.+.    +...+.+-++|++.++++-..+    .++.       .+.+||+|+..+++.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            55588888999999987654    3444566678888888775533    2222       2345555555555555544


Q ss_pred             ccCChh----hhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccccccccccc
Q 014826          109 KELPEG----IGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRL  184 (418)
Q Consensus       109 ~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~  184 (418)
                      ...|..    +++-..|.||.+++|......-..+++  .|.+|                      ..            
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l----------------------a~------------  149 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL----------------------AY------------  149 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH----------------------HH------------
Confidence            444432    233344555555555221111111110  00000                      00            


Q ss_pred             CCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCch-----hhhc
Q 014826          185 GDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS-----WMTS  259 (418)
Q Consensus       185 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~l~~  259 (418)
                                .......+.|+.....+|+...       .........+.....|+.+.+..|.+..+...     .+.+
T Consensus       150 ----------nKKaa~kp~Le~vicgrNRlen-------gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y  212 (388)
T COG5238         150 ----------NKKAADKPKLEVVICGRNRLEN-------GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY  212 (388)
T ss_pred             ----------HhhhccCCCceEEEeccchhcc-------CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH
Confidence                      0011223567777666665421       12222333455567888888888866555322     2237


Q ss_pred             CCCccEEEeeCCCCCCCCCC-----CCCCCccchhcccccccceecc-ccccCCCCCccCCCCCccccccCCcccccccc
Q 014826          260 LTNLKSLGLSLCENCEQLPP-----LGKLPSLEQLFISYMSSVKRVG-DEFLGVESDRHDSSSSSLVIIAFPKLKSLRIE  333 (418)
Q Consensus       260 ~~~L~~L~l~~~~~~~~~~~-----l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  333 (418)
                      +.+|+.|+++.|.++..-..     +..++.|+.|.+..|- ++.-+ ..++...           +...+|+|..|...
T Consensus       213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f-----------~e~~~p~l~~L~~~  280 (388)
T COG5238         213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRF-----------NEKFVPNLMPLPGD  280 (388)
T ss_pred             hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHh-----------hhhcCCCccccccc
Confidence            88999999999976643221     5667788999998886 32222 1111111           13356777777776


Q ss_pred             c
Q 014826          334 G  334 (418)
Q Consensus       334 ~  334 (418)
                      +
T Consensus       281 Y  281 (388)
T COG5238         281 Y  281 (388)
T ss_pred             h
Confidence            5

>PLN03150 hypothetical protein; Provisional

Probab=98.59  E-value=7.8e-08  Score=96.39  Aligned_cols=106  Identities=25%  Similarity=0.331  Sum_probs=82.4

Q ss_pred             CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-cCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826           49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR  127 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  127 (418)
                      .++.|+|+++.+.+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3677888888877777777888888888888888875 777778888888888888888777888888888888888888


Q ss_pred             CCcccccCCcccccc-cccceecceeec
Q 014826          128 GTNSLRYMPVGIGRL-TGLRTLGEFRVS  154 (418)
Q Consensus       128 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~  154 (418)
                      +|.+.+.+|..+... .++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            887777888777643 345555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.56  E-value=6e-08  Score=92.51  Aligned_cols=183  Identities=33%  Similarity=0.356  Sum_probs=116.5

Q ss_pred             hccCCCccEEecCCCCCcHHHHHhhcccc-ccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhcccccc
Q 014826           44 FRESTSLRALDVSQVSLPTEILRNIKKLV-HLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMK  122 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  122 (418)
                      +...+.++.|.+.++. ..+++....... +|++|+++++.+..+|..+..+++|+.|++.+|+ +.++|...+..++|+
T Consensus       112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence            4555778888888887 445555555553 7888888888888887677788888888888888 777776665778888


Q ss_pred             EEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcc
Q 014826          123 HLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKK  202 (418)
Q Consensus       123 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~  202 (418)
                      .|++++| ....+|..+.....|+++.+.++...        .....+                            +..+
T Consensus       190 ~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~--------~~~~~~----------------------------~~~~  232 (394)
T COG4886         190 NLDLSGN-KISDLPPEIELLSALEELDLSNNSII--------ELLSSL----------------------------SNLK  232 (394)
T ss_pred             heeccCC-ccccCchhhhhhhhhhhhhhcCCcce--------ecchhh----------------------------hhcc
Confidence            8888888 55666766656666777777666311        011111                            2223


Q ss_pred             cccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC
Q 014826          203 YLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP  279 (418)
Q Consensus       203 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  279 (418)
                      ++..+.+..+...            .....+..++.+++|+++.|.+.. ++. ++...+++.|+++++......+.
T Consensus       233 ~l~~l~l~~n~~~------------~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         233 NLSGLELSNNKLE------------DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccccCCceee------------eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence            3333333333211            113445556677777777774433 333 66777888888888776655544

>PLN03150 hypothetical protein; Provisional

Probab=98.55  E-value=1.6e-07  Score=94.21  Aligned_cols=107  Identities=17%  Similarity=0.267  Sum_probs=93.2

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-cCchhhhcCCCC
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPETLCELYNL   97 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L   97 (418)
                      .++.|+|+++.     +.. .++..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|.+. .+|..+..+++|
T Consensus       419 ~v~~L~L~~n~-----L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L  492 (623)
T PLN03150        419 FIDGLGLDNQG-----LRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL  492 (623)
T ss_pred             EEEEEECCCCC-----ccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence            48899999987     444 35666899999999999999988899988999999999999999987 789999999999


Q ss_pred             cEEeccCccCcccCChhhhcc-ccccEEeccCCcc
Q 014826           98 EKLDISYCFNLKELPEGIGKL-INMKHLLNRGTNS  131 (418)
Q Consensus        98 ~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~  131 (418)
                      +.|++++|.+.+.+|..++.+ .++..+++.+|..
T Consensus       493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            999999999888999888764 5677888888743

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.53  E-value=1.5e-08  Score=87.66  Aligned_cols=127  Identities=22%  Similarity=0.219  Sum_probs=63.7

Q ss_pred             cceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCC
Q 014826           17 VKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYN   96 (418)
Q Consensus        17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~   96 (418)
                      ..-|.++||++|.     |+.  +.+-..-.+.+|.|++++|.+...-  .+..+++|+.||+++|.+..+..+-.++.|
T Consensus       283 Wq~LtelDLS~N~-----I~~--iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGN  353 (490)
T KOG1259|consen  283 WQELTELDLSGNL-----ITQ--IDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGN  353 (490)
T ss_pred             Hhhhhhccccccc-----hhh--hhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcC
Confidence            3445555666554     333  3333444555666666655533211  144555566666666555555444445555


Q ss_pred             CcEEeccCccCcccCChhhhccccccEEeccCCcccccC--CcccccccccceecceeecC
Q 014826           97 LEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYM--PVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        97 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~  155 (418)
                      ++.|.+..|. +.++. +++++.+|..|++.+|++ ..+  ...+++++-|+++.+.+|+.
T Consensus       354 IKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  354 IKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             Eeeeehhhhh-Hhhhh-hhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCc
Confidence            6666665554 32222 355555666666655532 221  23355555555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=1.4e-07  Score=81.61  Aligned_cols=224  Identities=17%  Similarity=0.059  Sum_probs=127.5

Q ss_pred             EEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH--HHHhhccccccceeeeCCCCCccCchhh-hcCCCCc
Q 014826           22 TLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE--ILRNIKKLVHLRYLNLRFPKIVKLPETL-CELYNLE   98 (418)
Q Consensus        22 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~l~~~~-~~l~~L~   98 (418)
                      .+.+.++.  +...++  ...+-..++.++.++|.+|.+.+.  +...+.++|.|++|++++|.+...-..+ ....+|+
T Consensus        49 llvln~~~--id~~gd--~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   49 LLVLNGSI--IDNEGD--VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             hheecCCC--CCcchh--HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            45555554  223333  444456788888899988886543  4445678888999999888754221111 3567888


Q ss_pred             EEeccCccCcc-cCChhhhccccccEEeccCCcccccCC--ccccc-ccccceecceeecCCCCCCCccccccccccCCc
Q 014826           99 KLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMP--VGIGR-LTGLRTLGEFRVSAGGDVDGRKACRLESLKNLE  174 (418)
Q Consensus        99 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  174 (418)
                      .|.|.+.+... +.-..+..+|.+++|+++.|+.-....  ..+.. -+.++++..                      ++
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~----------------------~~  182 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ----------------------LP  182 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc----------------------CC
Confidence            88888877443 344456677888888887772211000  00000 011222211                      11


Q ss_pred             ccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCC-CC
Q 014826          175 HLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNT-VF  253 (418)
Q Consensus       175 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~  253 (418)
                      .+.....+           .....+..+++..+-+..|.+.          ...-......++.+.-|.++.+.+.. ..
T Consensus       183 c~~~~w~~-----------~~~l~r~Fpnv~sv~v~e~PlK----------~~s~ek~se~~p~~~~LnL~~~~idswas  241 (418)
T KOG2982|consen  183 CLEQLWLN-----------KNKLSRIFPNVNSVFVCEGPLK----------TESSEKGSEPFPSLSCLNLGANNIDSWAS  241 (418)
T ss_pred             cHHHHHHH-----------HHhHHhhcccchheeeecCccc----------chhhcccCCCCCcchhhhhcccccccHHH
Confidence            11111111           1111122367777777777542          12223344556667777887774322 13


Q ss_pred             chhhhcCCCccEEEeeCCCCCCCCCC-------CCCCCccchhccc
Q 014826          254 PSWMTSLTNLKSLGLSLCENCEQLPP-------LGKLPSLEQLFIS  292 (418)
Q Consensus       254 ~~~l~~~~~L~~L~l~~~~~~~~~~~-------l~~l~~L~~L~L~  292 (418)
                      .+.+..+++|.-|+++.+++.+.+..       ++++++++.|+=+
T Consensus       242 vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  242 VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            45667999999999999998876543       6778888888655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.40  E-value=3.2e-07  Score=87.58  Aligned_cols=177  Identities=21%  Similarity=0.254  Sum_probs=121.5

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCC-CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFREST-SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC   92 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~   92 (418)
                      +...+.++.|++.++.     +.+  ++....... +|+.|+++++. ...+|..+..+++|+.|+++.|.+.++|....
T Consensus       112 ~~~~~~l~~L~l~~n~-----i~~--i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~  183 (394)
T COG4886         112 LLELTNLTSLDLDNNN-----ITD--IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS  183 (394)
T ss_pred             hhcccceeEEecCCcc-----ccc--Cccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchhhhhhhhhh
Confidence            3455778999998887     555  444455553 89999999988 55665668889999999999999998887776


Q ss_pred             cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826           93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN  172 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  172 (418)
                      ..++|+.|+++++. +..+|...+....|++|.+++|. ....+..+.++..+..+.+..+...        ........
T Consensus       184 ~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~--------~~~~~~~~  253 (394)
T COG4886         184 NLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE--------DLPESIGN  253 (394)
T ss_pred             hhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceee--------eccchhcc
Confidence            88899999999988 77788766666779999988883 3345566677777777765554432        11233344


Q ss_pred             CcccccccccccCCCcchhhhhhhhcCCcccccceEeecccc
Q 014826          173 LEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKK  214 (418)
Q Consensus       173 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  214 (418)
                      +..++.+++...... ...     .+....+++.++++++..
T Consensus       254 l~~l~~L~~s~n~i~-~i~-----~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         254 LSNLETLDLSNNQIS-SIS-----SLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ccccceecccccccc-ccc-----cccccCccCEEeccCccc
Confidence            444555544433221 111     145567888898888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.39  E-value=3e-07  Score=78.61  Aligned_cols=248  Identities=15%  Similarity=0.091  Sum_probs=156.6

Q ss_pred             cccCCCCCcccc---ccceeeEEeecCCCCCCCCccH---HHHHHHhccCCCccEEecCCCCC---cHHHH-------Hh
Q 014826            4 FSKGASLPVSTR---RVKRMRTLLISASGSDHSSLNA---EIVEELFRESTSLRALDVSQVSL---PTEIL-------RN   67 (418)
Q Consensus         4 ~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~---~~~~~-------~~   67 (418)
                      +.+..++...+.   -+..+..++||||.     ++.   +.+...+.+-.+|++.+++.-..   .+.++       ..
T Consensus        13 l~T~eDvk~v~eel~~~d~~~evdLSGNt-----igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~a   87 (388)
T COG5238          13 LETKEDVKGVVEELEMMDELVEVDLSGNT-----IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKA   87 (388)
T ss_pred             ccccchhhHHHHHHHhhcceeEEeccCCc-----ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHH
Confidence            344445555443   45688999999998     444   34556667778899998886531   23333       34


Q ss_pred             hccccccceeeeCCCCCc-cCc----hhhhcCCCCcEEeccCccCcccCChh-hh-------------ccccccEEeccC
Q 014826           68 IKKLVHLRYLNLRFPKIV-KLP----ETLCELYNLEKLDISYCFNLKELPEG-IG-------------KLINMKHLLNRG  128 (418)
Q Consensus        68 ~~~l~~L~~L~l~~~~l~-~l~----~~~~~l~~L~~L~l~~~~~~~~~~~~-l~-------------~l~~L~~L~l~~  128 (418)
                      +.+|++|+..++|+|.++ ..|    +.++....|.+|.+.+|. .+.+..+ ++             .-|.|+...+.+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            567999999999999977 444    557788999999999998 5544321 22             235566666655


Q ss_pred             CcccccCCcc-----cccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826          129 TNSLRYMPVG-----IGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY  203 (418)
Q Consensus       129 ~~~~~~~~~~-----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~  203 (418)
                      |.+ ...+..     +..-..|++..+..|.+.                              ...........+..+++
T Consensus       167 NRl-engs~~~~a~~l~sh~~lk~vki~qNgIr------------------------------pegv~~L~~~gl~y~~~  215 (388)
T COG5238         167 NRL-ENGSKELSAALLESHENLKEVKIQQNGIR------------------------------PEGVTMLAFLGLFYSHS  215 (388)
T ss_pred             chh-ccCcHHHHHHHHHhhcCceeEEeeecCcC------------------------------cchhHHHHHHHHHHhCc
Confidence            532 111111     111123344443333322                              11123334445666789


Q ss_pred             ccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh------cCCCccEEEeeCCCCCCCC
Q 014826          204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT------SLTNLKSLGLSLCENCEQL  277 (418)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~------~~~~L~~L~l~~~~~~~~~  277 (418)
                      |+.|++..|..+.       ..+..+...+..++.|+.|.+..|.+......++.      ..|+|..|...+|..-...
T Consensus       216 LevLDlqDNtft~-------~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         216 LEVLDLQDNTFTL-------EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             ceeeeccccchhh-------hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence            9999998887542       12344555677788899999999976665443332      5789999999998654432


Q ss_pred             ------CC--CCCCCccchhcccccc
Q 014826          278 ------PP--LGKLPSLEQLFISYMS  295 (418)
Q Consensus       278 ------~~--l~~l~~L~~L~L~~~~  295 (418)
                            +.  -..+|.|..+.+.||.
T Consensus       289 i~~~~l~~~e~~~~p~L~~le~ngNr  314 (388)
T COG5238         289 ILDISLNEFEQDAVPLLVDLERNGNR  314 (388)
T ss_pred             eeeechhhhhhcccHHHHHHHHccCc
Confidence                  22  3568999999999887

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.37  E-value=3.5e-07  Score=61.67  Aligned_cols=56  Identities=30%  Similarity=0.481  Sum_probs=30.4

Q ss_pred             ccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEeccCC
Q 014826           73 HLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGT  129 (418)
Q Consensus        73 ~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~  129 (418)
                      +|++|++++|.++.+| ..+.++++|++|++++|. +..++ ..+.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence            4555566655555555 345555666666666555 23332 34555666666666555

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.37  E-value=8.7e-08  Score=83.03  Aligned_cols=56  Identities=20%  Similarity=0.202  Sum_probs=27.0

Q ss_pred             cccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826           72 VHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        72 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  129 (418)
                      .-|++||+++|.++.+-+.+.-.|.++.|++++|. +..+.. ++.+++|++|++++|
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGN  339 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccc
Confidence            33445555555555544444455555555555554 222222 444555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.35  E-value=2e-07  Score=62.91  Aligned_cols=59  Identities=27%  Similarity=0.359  Sum_probs=42.1

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCcc
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCF  106 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~  106 (418)
                      ++|++|++++|.+...-+..|.++++|++|++++|.++.++ ..+.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            46777778777644333345677888888888888777666 467788888888888775

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.29  E-value=4.9e-08  Score=91.55  Aligned_cols=103  Identities=25%  Similarity=0.309  Sum_probs=56.8

Q ss_pred             ccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826           50 LRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        50 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  129 (418)
                      |++|-+++|+ .+.+|+.++...+|..|+.+.|.+..+|..+.++..|+.|.++.|+ ...+|..+. .-.|..|+++.|
T Consensus       145 Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScN  221 (722)
T KOG0532|consen  145 LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCN  221 (722)
T ss_pred             ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccC
Confidence            4444444444 3334444444455555555555555555555555555555555555 444555555 445666666555


Q ss_pred             cccccCCcccccccccceecceeecCC
Q 014826          130 NSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       130 ~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                       .+..+|-.|.+|.+|++|-+.+|...
T Consensus       222 -kis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  222 -KISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -ceeecchhhhhhhhheeeeeccCCCC
Confidence             45566666777777777666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.07  E-value=3.3e-06  Score=84.78  Aligned_cols=133  Identities=18%  Similarity=0.070  Sum_probs=79.5

Q ss_pred             ceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCc-HHHHHhhccccccceeeeCCCCCccCchhhhcCCC
Q 014826           18 KRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLP-TEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYN   96 (418)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~   96 (418)
                      .+|++|+++|..    .+...+....-.-+|.|+.|.+++-.+. +++......+++|+.||+++++++.+ ..++.+++
T Consensus       122 ~nL~~LdI~G~~----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSE----LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccc----hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence            367777777766    4455456665666777777777776543 33444456677777777777777766 56677777


Q ss_pred             CcEEeccCccCcc-cCChhhhccccccEEeccCCcccccC--C----cccccccccceecceeecC
Q 014826           97 LEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYM--P----VGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        97 L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~--~----~~l~~l~~L~~L~l~~~~~  155 (418)
                      |+.|.+++-.+.. .--..+-.+.+|+.|+++........  .    +.-..+|.|+.|+++++..
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            7777776655332 11223556777777777765222111  1    0111356666666654433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.04  E-value=5.6e-07  Score=86.20  Aligned_cols=129  Identities=22%  Similarity=0.264  Sum_probs=73.9

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCC
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELY   95 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~   95 (418)
                      .+..++.+.+..+.     +..  ....+..+++|+.|++.++.+ ..+...+..+++|++|++++|.++.+. .+..++
T Consensus        70 ~l~~l~~l~l~~n~-----i~~--~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNL-----IAK--ILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLT  140 (414)
T ss_pred             HhHhHHhhccchhh-----hhh--hhcccccccceeeeeccccch-hhcccchhhhhcchheecccccccccc-chhhcc
Confidence            45555556555554     332  222356667777777777763 333222556777777777777777663 355566


Q ss_pred             CCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcc-cccccccceecceeecCC
Q 014826           96 NLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        96 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~  156 (418)
                      .|+.|++.+|. +..+.. +..+.+|+.+++++|.+...-+ . +..+.+++.+.+..+...
T Consensus       141 ~L~~L~l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  141 LLKELNLSGNL-ISDISG-LESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhhheeccCc-chhccC-CccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence            67777777776 444432 4446677777777774332222 1 355566666666555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.94  E-value=1.6e-06  Score=85.02  Aligned_cols=243  Identities=18%  Similarity=0.164  Sum_probs=117.1

Q ss_pred             cccccEEeccCCccccc--CCcccccccccceecceee-cCCCCCCCccccccccccCCcccccccccccCCCcchhhhh
Q 014826          118 LINMKHLLNRGTNSLRY--MPVGIGRLTGLRTLGEFRV-SAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAK  194 (418)
Q Consensus       118 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~  194 (418)
                      +++|+.|.+.++.....  .-.....+++|+.|++..+ .......   .........++.|+.+++.....+.+.+...
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP---LLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch---hHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            45566665555533322  2223334555555555441 1110000   0011122333444455554444444322222


Q ss_pred             hhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC--CchhhhcCCCccEEEeeCCC
Q 014826          195 RLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV--FPSWMTSLTNLKSLGLSLCE  272 (418)
Q Consensus       195 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~  272 (418)
                        ....|++|+.|.+.++...         .+..+......+++|++|++++|.....  +.....++++++.|.+..+.
T Consensus       264 --l~~~c~~L~~L~l~~c~~l---------t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  264 --LASRCPNLETLSLSNCSNL---------TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN  332 (482)
T ss_pred             --HHhhCCCcceEccCCCCcc---------chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence              2233778888886666521         4455566667788888888887754322  22223367777776655543


Q ss_pred             CCCCCCC-----CCC-C-CccchhcccccccceeccccccCCCCCccCCCCCccccccCCccc-cccccccccc-ccccc
Q 014826          273 NCEQLPP-----LGK-L-PSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLK-SLRIEGLMEL-EEWDY  343 (418)
Q Consensus       273 ~~~~~~~-----l~~-l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l-~~l~~  343 (418)
                      ....+..     ... . ..++.+.+.+|+.+.+.......                 ..... .+.+.+|+.+ ..+..
T Consensus       333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-----------------~~~~~~~~~l~gc~~l~~~l~~  395 (482)
T KOG1947|consen  333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-----------------ISDLGLELSLRGCPNLTESLEL  395 (482)
T ss_pred             CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-----------------ccCcchHHHhcCCcccchHHHH
Confidence            2111100     011 1 13344444444433333222111                 11111 3445556666 33332


Q ss_pred             cccccCCcccccCCCccEEEEecCCCCCcCCc-ccc-CCCCccEEEeccCCchhcccC
Q 014826          344 GITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIH-QTTTLKRLWILNCGPLGERYR  399 (418)
Q Consensus       344 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~-~~~~L~~L~l~~c~~l~~~~~  399 (418)
                      ...        .+..++.|.+..|...+...- ... .+..++.+.+.+|+.+.....
T Consensus       396 ~~~--------~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~  445 (482)
T KOG1947|consen  396 RLC--------RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL  445 (482)
T ss_pred             Hhc--------cCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence            222        344589999999976653322 111 277889999999998776644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.87  E-value=6.3e-07  Score=86.63  Aligned_cols=138  Identities=19%  Similarity=0.143  Sum_probs=94.9

Q ss_pred             cCCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc
Q 014826            6 KGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV   85 (418)
Q Consensus         6 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~   85 (418)
                      ..+++..++ ..-.|.+.+.+.|.     +..  +.+.+.-++.|+.|+|++|++...-  .+.+|++|++|||++|.+.
T Consensus       153 cggd~~ns~-~Wn~L~~a~fsyN~-----L~~--mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  153 CGGDISNSP-VWNKLATASFSYNR-----LVL--MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             hccccccch-hhhhHhhhhcchhh-----HHh--HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc
Confidence            344444332 33467777777776     554  5555777888999999999855432  6788999999999999988


Q ss_pred             cCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCccccc-CCcccccccccceecceeecC
Q 014826           86 KLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        86 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      .+|..-..-.+|+.|.+++|. ...+- ++.++.+|+.|++++|-+.+. --.-+..+..|+.|.+.+|+.
T Consensus       223 ~vp~l~~~gc~L~~L~lrnN~-l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  223 HVPQLSMVGCKLQLLNLRNNA-LTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccccchhhhhheeeeecccH-HHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            887543323349999999987 55454 488899999999998833222 112245566777777776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=2.2e-05  Score=48.55  Aligned_cols=34  Identities=38%  Similarity=0.467  Sum_probs=18.0

Q ss_pred             ccceeeeCCCCCccCchhhhcCCCCcEEeccCcc
Q 014826           73 HLRYLNLRFPKIVKLPETLCELYNLEKLDISYCF  106 (418)
Q Consensus        73 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~  106 (418)
                      +|++|++++|.++.+|..+.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            4555555555555555545555555555555555

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.80  E-value=2.1e-06  Score=83.13  Aligned_cols=160  Identities=23%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             CccccccceeeEEeecCCCCCCCCccH-----------------HHHHHHhcc----------CCCccEEecCCCCCcHH
Q 014826           11 PVSTRRVKRMRTLLISASGSDHSSLNA-----------------EIVEELFRE----------STSLRALDVSQVSLPTE   63 (418)
Q Consensus        11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~~~~l~~----------~~~L~~L~l~~~~~~~~   63 (418)
                      |-++..+.+||+|.+.+|.+  ....+                 ..+.++|..          +..|...+.++|. ...
T Consensus       102 pi~ifpF~sLr~LElrg~~L--~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDL--STAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR-LVL  178 (1096)
T ss_pred             CceeccccceeeEEecCcch--hhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-HHh
Confidence            66778899999999999982  11111                 012222221          2345555555555 223


Q ss_pred             HHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccc
Q 014826           64 ILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRL  142 (418)
Q Consensus        64 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l  142 (418)
                      +-+.+.-++.|+.|+++.|.+..+. .+..+++|++|||++|+ ...+|.. ..+|. |+.|.+++|....  -.++.++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHHh--hhhHHhh
Confidence            3344555778889999998888774 67888899999999888 6666642 23344 8888888884322  2456788


Q ss_pred             cccceecceeecCCCCCCCccccccccccCCccccccccccc
Q 014826          143 TGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRL  184 (418)
Q Consensus       143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~  184 (418)
                      .+|+.|++.+|-..      ....+.-+..|..|+.+++...
T Consensus       254 ksL~~LDlsyNll~------~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLS------EHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             hhhhccchhHhhhh------cchhhhHHHHHHHHHHHhhcCC
Confidence            88888888887665      2334455556666666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.76  E-value=6e-06  Score=63.51  Aligned_cols=101  Identities=21%  Similarity=0.228  Sum_probs=50.3

Q ss_pred             CccEEecCCCCCcHHHHHh---hccccccceeeeCCCCCccCchhhh-cCCCCcEEeccCccCcccCChhhhccccccEE
Q 014826           49 SLRALDVSQVSLPTEILRN---IKKLVHLRYLNLRFPKIVKLPETLC-ELYNLEKLDISYCFNLKELPEGIGKLINMKHL  124 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  124 (418)
                      .+-.++|++|+ ...+++.   +.+...|+..++++|.+..+|..+. ..+.++.|++.+|. +.++|..++.|+.|+.|
T Consensus        28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence            34445555555 2222222   2333344444566666665554443 33456666666655 55566556666666666


Q ss_pred             eccCCcccccCCcccccccccceeccee
Q 014826          125 LNRGTNSLRYMPVGIGRLTGLRTLGEFR  152 (418)
Q Consensus       125 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~  152 (418)
                      +++.|. ....|..+..+.+|..|+..+
T Consensus       106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  106 NLRFNP-LNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             ccccCc-cccchHHHHHHHhHHHhcCCC
Confidence            665552 233444444444555544433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.75  E-value=5.8e-06  Score=79.23  Aligned_cols=107  Identities=29%  Similarity=0.309  Sum_probs=80.7

Q ss_pred             ccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEE
Q 014826           45 RESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHL  124 (418)
Q Consensus        45 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  124 (418)
                      ..+..++.+.+..+. .......+..+++|.+|++.++.+..+...+..+++|++|++++|. +.++.. +..+..|+.|
T Consensus        69 ~~l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhh-hhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhh
Confidence            456677777788776 4344445788899999999999999887657889999999999998 555553 7777889999


Q ss_pred             eccCCcccccCCcccccccccceecceeecCC
Q 014826          125 LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       125 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      ++.+|.+...  ..+..++.|+.+++.++...
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhh
Confidence            9999844322  33445788888888877765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.74  E-value=8.3e-06  Score=79.99  Aligned_cols=220  Identities=16%  Similarity=0.092  Sum_probs=128.9

Q ss_pred             cccccceecceeecCCCCCCCccccccccccCCcccccccccc-cCCCcchhhhhhhhcCCcccccceEeecccccCCCC
Q 014826          141 RLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRR-LGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGE  219 (418)
Q Consensus       141 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  219 (418)
                      .++.|+.+.+..+...++.     .........+.|+.+++.. ...+...+.........|++|+.++++++...    
T Consensus       186 ~~~~L~~l~l~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i----  256 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDD-----SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV----  256 (482)
T ss_pred             hCchhhHhhhcccccCChh-----hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc----
Confidence            4788888888777654211     1223344566666666654 22233333333335567799999999988631    


Q ss_pred             CccccchhhhhhhCCCCCCCcEEEEeeec-CCCCCchhh-hcCCCccEEEeeCCCCCCCC--CC-CCCCCccchhccccc
Q 014826          220 RRKNEDDQLLLEALRPPLDLKELEIQFNR-GNTVFPSWM-TSLTNLKSLGLSLCENCEQL--PP-LGKLPSLEQLFISYM  294 (418)
Q Consensus       220 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~--~~-l~~l~~L~~L~L~~~  294 (418)
                           .+..+......|++|+.|.+..|. .++..-..+ ..+++|++|++++|....+.  .. ...+++|+.+.+..+
T Consensus       257 -----sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  257 -----TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             -----CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence                 233333334458999999988886 354443444 37999999999999765332  11 344777666655544


Q ss_pred             c---cceeccccccCCCCCccCCCCCccccccC-CcccccccccccccccccccccccCCcccccCCCcc-EEEEecCCC
Q 014826          295 S---SVKRVGDEFLGVESDRHDSSSSSLVIIAF-PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLS-SLVIDSCYE  369 (418)
Q Consensus       295 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~  369 (418)
                      .   .++.......               .... ..+..+.+.+|++++++.....        .-.... .+.+.+|+.
T Consensus       332 ~~c~~l~~~~l~~~---------------~~~~~d~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~l~gc~~  388 (482)
T KOG1947|consen  332 NGCPSLTDLSLSGL---------------LTLTSDDLAELILRSCPKLTDLSLSYC--------GISDLGLELSLRGCPN  388 (482)
T ss_pred             CCCccHHHHHHHHh---------------hccCchhHhHHHHhcCCCcchhhhhhh--------hccCcchHHHhcCCcc
Confidence            3   2333322111               1112 2566777777777777766554        222222 566777777


Q ss_pred             CC-cCCccccCCCCccEEEeccCCchhcc
Q 014826          370 LK-ALPDHIHQTTTLKRLWILNCGPLGER  397 (418)
Q Consensus       370 l~-~~~~~~~~~~~L~~L~l~~c~~l~~~  397 (418)
                      ++ ++.........++.|++..|..+...
T Consensus       389 l~~~l~~~~~~~~~l~~L~l~~~~~~t~~  417 (482)
T KOG1947|consen  389 LTESLELRLCRSDSLRVLNLSDCRLVTDK  417 (482)
T ss_pred             cchHHHHHhccCCccceEecccCcccccc
Confidence            73 33322333444899999999876655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=3.4e-05  Score=47.68  Aligned_cols=40  Identities=25%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP   88 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~   88 (418)
                      ++|++|++++|.+. ++|..+++|++|++|++++|.++.++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            35677777777633 45555677777777777777766554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=1e-05  Score=70.46  Aligned_cols=96  Identities=19%  Similarity=0.185  Sum_probs=69.5

Q ss_pred             CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-
Q 014826            7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-   85 (418)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-   85 (418)
                      .+++-..-+.+++++.+||.+|.  ++.-++  +..++.+++.|++|++++|.+...+-..-.-+.+|++|-+.++++. 
T Consensus        60 ~gd~~~~~~~~~~v~elDL~~N~--iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w  135 (418)
T KOG2982|consen   60 EGDVMLFGSSVTDVKELDLTGNL--ISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW  135 (418)
T ss_pred             chhHHHHHHHhhhhhhhhcccch--hccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh
Confidence            34444444589999999999998  333333  6677889999999999999865443211134678999999998844 


Q ss_pred             -cCchhhhcCCCCcEEeccCcc
Q 014826           86 -KLPETLCELYNLEKLDISYCF  106 (418)
Q Consensus        86 -~l~~~~~~l~~L~~L~l~~~~  106 (418)
                       .....+..+|.++.|.++.|.
T Consensus       136 ~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  136 TQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhhcchhhhhhhhccch
Confidence             555667788888888888773

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.71  E-value=5.3e-05  Score=76.27  Aligned_cols=113  Identities=25%  Similarity=0.277  Sum_probs=85.5

Q ss_pred             cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc--hhhh
Q 014826           15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP--ETLC   92 (418)
Q Consensus        15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~--~~~~   92 (418)
                      .-+|+|++|.++|-.     +..+.+...+.++++|+.||++++++. .+ .+++++++|++|.+.+-.+..-.  ..+.
T Consensus       145 ~~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             hhCcccceEEecCce-----ecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            378999999999976     434347777899999999999999844 44 57899999999999987766433  3466


Q ss_pred             cCCCCcEEeccCccCcccC--Ch----hhhccccccEEeccCCccccc
Q 014826           93 ELYNLEKLDISYCFNLKEL--PE----GIGKLINMKHLLNRGTNSLRY  134 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~--~~----~l~~l~~L~~L~l~~~~~~~~  134 (418)
                      .+++|+.||++.......-  ..    --..+|+|+.|+++++...+.
T Consensus       218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            8999999999987643321  11    112489999999998744433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=6.7e-06  Score=70.84  Aligned_cols=101  Identities=22%  Similarity=0.182  Sum_probs=77.8

Q ss_pred             cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch--hhh
Q 014826           15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE--TLC   92 (418)
Q Consensus        15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~   92 (418)
                      +.+.+.+.|+++||.     +.+   ..+..+++.|++|.|+-|++.+--  .+.+|.+|++|++..|.|..+.+  -+.
T Consensus        16 sdl~~vkKLNcwg~~-----L~D---Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLk   85 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCG-----LDD---ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLK   85 (388)
T ss_pred             hHHHHhhhhcccCCC-----ccH---HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence            456688999999997     776   334789999999999999854332  37889999999999999887653  366


Q ss_pred             cCCCCcEEeccCccCcccCCh-----hhhccccccEEe
Q 014826           93 ELYNLEKLDISYCFNLKELPE-----GIGKLINMKHLL  125 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~  125 (418)
                      ++++|+.|.|..|...+.-+.     .+.-+|+|++|+
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            899999999988775555443     245688888887

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00041  Score=64.66  Aligned_cols=66  Identities=23%  Similarity=0.255  Sum_probs=45.4

Q ss_pred             hccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcc
Q 014826           68 IKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVG  138 (418)
Q Consensus        68 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  138 (418)
                      +..+.+++.|++++|.++.+|.   --.+|+.|.+++|.....+|..+  .++|++|++++|.....+|..
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence            4457888888888888887772   12358888888877666667544  257888888887544445543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.58  E-value=1.4e-05  Score=61.53  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=86.7

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhh-ccccccceeeeCCCCCccCchhhhcCCCC
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNI-KKLVHLRYLNLRFPKIVKLPETLCELYNL   97 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~l~~~~~~l~~L   97 (418)
                      .+..++|+.|.  +-.+.+  ..+.+....+|+..++++|.+. ++|..| ...+.++.|+++.|.+.++|..+..++.|
T Consensus        28 E~h~ldLssc~--lm~i~d--avy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL  102 (177)
T KOG4579|consen   28 ELHFLDLSSCQ--LMYIAD--AVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL  102 (177)
T ss_pred             Hhhhcccccch--hhHHHH--HHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence            45567788876  223444  5666888899999999999844 444444 56678999999999999999889999999


Q ss_pred             cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcc
Q 014826           98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVG  138 (418)
Q Consensus        98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  138 (418)
                      +.|+++.|. ....|..+..+.+|-.|+..++.. ..++..
T Consensus       103 r~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na~-~eid~d  141 (177)
T KOG4579|consen  103 RSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENAR-AEIDVD  141 (177)
T ss_pred             hhcccccCc-cccchHHHHHHHhHHHhcCCCCcc-ccCcHH
Confidence            999999998 666777788889999998888733 344433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00022  Score=58.80  Aligned_cols=107  Identities=27%  Similarity=0.284  Sum_probs=79.5

Q ss_pred             ccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCC--CCCC
Q 014826          202 KYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCE--QLPP  279 (418)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~  279 (418)
                      .+...+++..|+..             -...+..++.|.+|.++.|+++...|.--.-+++|+.|.+.+|.+.+  ++.+
T Consensus        42 d~~d~iDLtdNdl~-------------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p  108 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-------------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP  108 (233)
T ss_pred             cccceecccccchh-------------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch
Confidence            35566677666532             24556778999999999998887777655578899999999997654  5666


Q ss_pred             CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccc
Q 014826          280 LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGL  335 (418)
Q Consensus       280 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  335 (418)
                      +..||+|+.|.+-+|+ +.+-......+             +-.+|+|+.|++...
T Consensus       109 La~~p~L~~Ltll~Np-v~~k~~YR~yv-------------l~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNP-VEHKKNYRLYV-------------LYKLPSLRTLDFQKV  150 (233)
T ss_pred             hccCCccceeeecCCc-hhcccCceeEE-------------EEecCcceEeehhhh
Confidence            8899999999999998 44433332222             567899999998864

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.36  E-value=0.00026  Score=58.39  Aligned_cols=104  Identities=23%  Similarity=0.247  Sum_probs=74.3

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh-cCCCCcEEeccCccCcccCCh--hhhccccccEE
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC-ELYNLEKLDISYCFNLKELPE--GIGKLINMKHL  124 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L  124 (418)
                      .....++|+.|.+. .+ ..+.+++.|..|.++.|+++.+...+. -+++|+.|.+.+|. +..+..  .++.|++|++|
T Consensus        42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence            35667888888733 33 246778889999999999887765444 46789999999887 443322  37788999999


Q ss_pred             eccCCccccc---CCcccccccccceecceeec
Q 014826          125 LNRGTNSLRY---MPVGIGRLTGLRTLGEFRVS  154 (418)
Q Consensus       125 ~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~  154 (418)
                      .+-+|.....   --..+.++++|++|++....
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9988854432   33567788899998876554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.23  E-value=0.0016  Score=60.89  Aligned_cols=59  Identities=19%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             CCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCC
Q 014826          199 DKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC  274 (418)
Q Consensus       199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  274 (418)
                      ..|++++.|+++.|.+.            .++   .-+.+|++|.+++|.....+|..+  .++|+.|++++|...
T Consensus        49 ~~~~~l~~L~Is~c~L~------------sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L  107 (426)
T PRK15386         49 EEARASGRLYIKDCDIE------------SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI  107 (426)
T ss_pred             HHhcCCCEEEeCCCCCc------------ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc
Confidence            34566666666665432            111   123456666666654434444433  246666666666433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.00033  Score=60.21  Aligned_cols=108  Identities=25%  Similarity=0.128  Sum_probs=64.5

Q ss_pred             hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC--Cc-cCchhhhcCCCCcEEeccCccCc--ccCChhhhcc
Q 014826           44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK--IV-KLPETLCELYNLEKLDISYCFNL--KELPEGIGKL  118 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~-~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l  118 (418)
                      ...+..|+.|.+.+..+++.  ..+-.+++|+.|.+++|+  +. .++.....+++|+++++++|++-  .+++ .++.+
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhh
Confidence            34555666666666553321  134567788888888884  22 44444455688888888888722  2233 36677


Q ss_pred             ccccEEeccCCccccc---CCcccccccccceecceeec
Q 014826          119 INMKHLLNRGTNSLRY---MPVGIGRLTGLRTLGEFRVS  154 (418)
Q Consensus       119 ~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~  154 (418)
                      ++|..|++..|....-   --..+.-+++|+.|+-....
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            7888888887743321   11234456778887765543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=8.1e-05  Score=64.34  Aligned_cols=101  Identities=20%  Similarity=0.209  Sum_probs=70.2

Q ss_pred             ccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCCh--hhhcccccc
Q 014826           45 RESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPE--GIGKLINMK  122 (418)
Q Consensus        45 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~  122 (418)
                      +.+.+.+.|+.+||.+ +++ ....+++.|++|.++-|.++.+. .+..|++|+.|.|+.|. +.++..  -+.++++|+
T Consensus        16 sdl~~vkKLNcwg~~L-~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGL-DDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR   91 (388)
T ss_pred             hHHHHhhhhcccCCCc-cHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence            3355778889988884 343 23567888999999988888773 47788888888888887 444432  266788888


Q ss_pred             EEeccCCcccccCC-----cccccccccceec
Q 014826          123 HLLNRGTNSLRYMP-----VGIGRLTGLRTLG  149 (418)
Q Consensus       123 ~L~l~~~~~~~~~~-----~~l~~l~~L~~L~  149 (418)
                      .|.|..|.-.+..+     ..+.-+++|+.|+
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888775444332     3355666776664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.61  E-value=0.00056  Score=58.81  Aligned_cols=85  Identities=24%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             ccccccceeeeCCCCCccCchhhhcCCCCcEEeccCc--cCcccCChhhhccccccEEeccCCcccccCCcc---ccccc
Q 014826           69 KKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYC--FNLKELPEGIGKLINMKHLLNRGTNSLRYMPVG---IGRLT  143 (418)
Q Consensus        69 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---l~~l~  143 (418)
                      ..+..|+.|++....++.+. .+-.+++|++|.++.|  +....++....++++|++|++++|.+. . +..   +.++.
T Consensus        40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhc
Confidence            44566777777777655442 2446889999999999  655666666677899999999999543 2 333   34566


Q ss_pred             ccceecceeecCC
Q 014826          144 GLRTLGEFRVSAG  156 (418)
Q Consensus       144 ~L~~L~l~~~~~~  156 (418)
                      +|..|++++|...
T Consensus       117 nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  117 NLKSLDLFNCSVT  129 (260)
T ss_pred             chhhhhcccCCcc
Confidence            6777777776544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.0002  Score=59.02  Aligned_cols=69  Identities=16%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             cccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCC-ccccCCCCccEEEeccCCchh
Q 014826          321 IIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALP-DHIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       321 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~  395 (418)
                      ...+++++.|.+.+|..+.++.....      -+..|+|+.|+|++|+.+++-. ..+..+++|+.|++.+-|.+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l------~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERL------GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHh------cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence            45788999999999999999987665      2257999999999999998654 456779999999998887554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00025  Score=58.51  Aligned_cols=90  Identities=19%  Similarity=0.244  Sum_probs=67.9

Q ss_pred             CCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC--C-CCCCccchhcccccccceeccccccCCCCCccC
Q 014826          237 LDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP--L-GKLPSLEQLFISYMSSVKRVGDEFLGVESDRHD  313 (418)
Q Consensus       237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~  313 (418)
                      ..++.++-+++.++.+..+.+..++.++.|.+.+|...++..-  + +-.++|+.|+|++|+.+++-+...         
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~---------  171 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC---------  171 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH---------
Confidence            4466777777767666777888999999999999987665421  2 246999999999999887766554         


Q ss_pred             CCCCccccccCCccccccccccccccccc
Q 014826          314 SSSSSLVIIAFPKLKSLRIEGLMELEEWD  342 (418)
Q Consensus       314 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  342 (418)
                             +..+++|+.|++.+++.+....
T Consensus       172 -------L~~lknLr~L~l~~l~~v~~~e  193 (221)
T KOG3864|consen  172 -------LLKLKNLRRLHLYDLPYVANLE  193 (221)
T ss_pred             -------HHHhhhhHHHHhcCchhhhchH
Confidence                   5578999999999877665444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.15  E-value=0.0053  Score=48.13  Aligned_cols=104  Identities=14%  Similarity=0.235  Sum_probs=45.0

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhh
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETL   91 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~   91 (418)
                      .|.+|++|+.+.+...      +.. +-...|..++.|+.+.+..+ +.......+.++++++.+.+.. .+..++ ..+
T Consensus         7 ~F~~~~~l~~i~~~~~------~~~-I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT------IKK-IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             TTTT-TT--EEEETST--------E-E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             HHhCCCCCCEEEECCC------eeE-eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence            4666777777776642      222 12333666667777777654 1221223456666677777754 333333 334


Q ss_pred             hcCCCCcEEeccCccCcccCC-hhhhccccccEEeccC
Q 014826           92 CELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRG  128 (418)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~  128 (418)
                      ..+++|+.+.+..+  ...++ ..+.++ +|+.+.+..
T Consensus        78 ~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            55667777766543  22222 234555 666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.96  E-value=0.01  Score=30.35  Aligned_cols=17  Identities=29%  Similarity=0.626  Sum_probs=8.1

Q ss_pred             cceeeeCCCCCccCchh
Q 014826           74 LRYLNLRFPKIVKLPET   90 (418)
Q Consensus        74 L~~L~l~~~~l~~l~~~   90 (418)
                      |++|++++|.++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44555555544444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.97  E-value=0.035  Score=26.29  Aligned_cols=15  Identities=33%  Similarity=0.525  Sum_probs=5.9

Q ss_pred             ccceeeeCCCCCccC
Q 014826           73 HLRYLNLRFPKIVKL   87 (418)
Q Consensus        73 ~L~~L~l~~~~l~~l   87 (418)
                      +|++|++++|.++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            345555555554443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.25  E-value=0.15  Score=39.79  Aligned_cols=102  Identities=11%  Similarity=0.166  Sum_probs=50.9

Q ss_pred             HhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCC-hhhhcccc
Q 014826           43 LFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELP-EGIGKLIN  120 (418)
Q Consensus        43 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~  120 (418)
                      .|.++.+|+.+.+... +.......|.++++|+.+.+..+ +..++ ..+.++++|+.+.+...  ...++ ..+..+.+
T Consensus         7 ~F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccc
Confidence            4677888888888753 12222344777888888888774 55555 34667777888888652  22232 24566788


Q ss_pred             ccEEeccCCcccccCCcccccccccceecc
Q 014826          121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGE  150 (418)
Q Consensus       121 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  150 (418)
                      |+.+.+..+ ....-...+.++ .|+.+.+
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~  110 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINI  110 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence            888887654 222222334454 5665543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.33  E-value=0.0051  Score=59.49  Aligned_cols=86  Identities=20%  Similarity=0.162  Sum_probs=45.3

Q ss_pred             eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHH----HHhhccc-cccceeeeCCCCCc-----cCch
Q 014826           20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEI----LRNIKKL-VHLRYLNLRFPKIV-----KLPE   89 (418)
Q Consensus        20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~l-~~L~~L~l~~~~l~-----~l~~   89 (418)
                      +..+.|.+|.+.....  ..+...+....+|..|+++++.+.+..    ...+... ..+++|++..|.++     .+.+
T Consensus        89 l~~L~L~~~~l~~~~~--~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGA--EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             HHHhhhhhCccccchH--HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            5666666666222221  224555666667777777776644321    1222222 44566666666644     2334


Q ss_pred             hhhcCCCCcEEeccCccC
Q 014826           90 TLCELYNLEKLDISYCFN  107 (418)
Q Consensus        90 ~~~~l~~L~~L~l~~~~~  107 (418)
                      .+...++++.++++-|.+
T Consensus       167 ~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHhcccchhHHHHHhccc
Confidence            454566666666666653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.14  E-value=0.011  Score=50.18  Aligned_cols=83  Identities=17%  Similarity=0.063  Sum_probs=40.4

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCC
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELY   95 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~   95 (418)
                      .+.+.+.||++.++     ...  +..-|+.++.|..|+++.+. ...+|..++....++.+++..|.....|..+...+
T Consensus        40 ~~kr~tvld~~s~r-----~vn--~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~  111 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNR-----LVN--LGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP  111 (326)
T ss_pred             ccceeeeehhhhhH-----HHh--hccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence            34445555555544     222  22223444445555555444 33344445555555555555555555555555555


Q ss_pred             CCcEEeccCcc
Q 014826           96 NLEKLDISYCF  106 (418)
Q Consensus        96 ~L~~L~l~~~~  106 (418)
                      +++++++..+.
T Consensus       112 ~~k~~e~k~~~  122 (326)
T KOG0473|consen  112 HPKKNEQKKTE  122 (326)
T ss_pred             CcchhhhccCc
Confidence            55555555554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.59  E-value=0.35  Score=25.71  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=15.8

Q ss_pred             cceeeEEeecCCCCCCCCccHHHHHH
Q 014826           17 VKRMRTLLISASGSDHSSLNAEIVEE   42 (418)
Q Consensus        17 ~~~L~~L~l~~~~~~~~~~~~~~~~~   42 (418)
                      |++|+.|+|++|.    .+++..+..
T Consensus         1 c~~L~~L~l~~C~----~itD~gl~~   22 (26)
T smart00367        1 CPNLRELDLSGCT----NITDEGLQA   22 (26)
T ss_pred             CCCCCEeCCCCCC----CcCHHHHHH
Confidence            5678888888887    677766554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.06  E-value=0.017  Score=55.91  Aligned_cols=40  Identities=13%  Similarity=0.006  Sum_probs=22.3

Q ss_pred             cCCCccEEEEecCCCCCcCCc----cccCCCCccEEEeccCCch
Q 014826          355 IMPHLSSLVIDSCYELKALPD----HIHQTTTLKRLWILNCGPL  394 (418)
Q Consensus       355 ~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~L~l~~c~~l  394 (418)
                      ..+.++.++++.+....+.+.    .......++.++++.++.-
T Consensus       402 ~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  445 (478)
T KOG4308|consen  402 SNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPIT  445 (478)
T ss_pred             hcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhh
Confidence            566777777776643332221    1222227777777777643

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.53  E-value=0.55  Score=24.32  Aligned_cols=11  Identities=36%  Similarity=0.525  Sum_probs=4.1

Q ss_pred             CccEEecCCCC
Q 014826           49 SLRALDVSQVS   59 (418)
Q Consensus        49 ~L~~L~l~~~~   59 (418)
                      +|++|++++|.
T Consensus         3 ~L~~L~l~~n~   13 (24)
T PF13516_consen    3 NLETLDLSNNQ   13 (24)
T ss_dssp             T-SEEE-TSSB
T ss_pred             CCCEEEccCCc
Confidence            44444444444

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.93  E-value=0.7  Score=24.44  Aligned_cols=19  Identities=32%  Similarity=0.436  Sum_probs=11.3

Q ss_pred             cccceeeeCCCCCccCchh
Q 014826           72 VHLRYLNLRFPKIVKLPET   90 (418)
Q Consensus        72 ~~L~~L~l~~~~l~~l~~~   90 (418)
                      ++|++|++++|.+..+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.93  E-value=0.7  Score=24.44  Aligned_cols=19  Identities=32%  Similarity=0.436  Sum_probs=11.3

Q ss_pred             cccceeeeCCCCCccCchh
Q 014826           72 VHLRYLNLRFPKIVKLPET   90 (418)
Q Consensus        72 ~~L~~L~l~~~~l~~l~~~   90 (418)
                      ++|++|++++|.+..+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	418
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 2e-19
 Identities = 51/249 (20%), Positives = 89/249 (35%), Gaps = 44/249 (17%)

Query: 47  STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCF 106
                AL++  V L  +      +L HL+++ +    +++LP+T+ +   LE L ++   
Sbjct: 80  QPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN- 137

Query: 107 NLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166
            L+ LP  I  L  ++ L  R    L  +P  +                           
Sbjct: 138 PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG---------------- 181

Query: 167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRL-ELDKKKYLSCLRLRFDKKKEGGERRKNED 225
           L +L++L  L+  GIR L     +   + L  L     +    L                
Sbjct: 182 LVNLQSL-RLEWTGIRSLPA--SIANLQNLKSLK----IRNSPLSA-------------- 220

Query: 226 DQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP 284
              L  A+     L+EL+++       +P        LK L L  C N   LP  + +L 
Sbjct: 221 ---LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 285 SLEQLFISY 293
            LE+L +  
Sbjct: 278 QLEKLDLRG 286

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 7e-18
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 9   SLPVSTRRVKRMRTLLISASGSDHSSLNAEI----VEELFRESTSLRALDVSQVSLPTEI 64
           +LP S   + R+R L I  +  + + L   +         +   +L++L +    +   +
Sbjct: 141 ALPASIASLNRLRELSIR-ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSL 198

Query: 65  LRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHL 124
             +I  L +L+ L +R   +  L   +  L  LE+LD+  C  L+  P   G    +K L
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 125 LNRGTNSLRYMPVGIGRLTGLRTL 148
           + +  ++L  +P+ I RLT L  L
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 49/262 (18%), Positives = 82/262 (31%), Gaps = 73/262 (27%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
           + L+ + +    L  E+   +++   L  L L    +  LP ++  L  L +L I  C  
Sbjct: 104 SHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162

Query: 108 LKELPEGIGKLI------NMKHL--LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDV 159
           L ELPE +           + +L  L      +R +P  I  L  L++L          +
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL---------KI 213

Query: 160 DGRKACRLES-------LKNLEHLQVCGIRRLGDV-SDVGEAKRLELDKKKYLSCLRLRF 211
                  L +       L  LE L + G   L +     G                    
Sbjct: 214 RN---SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP---------------- 254

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
                                      LK L ++        P  +  LT L+ L L  C
Sbjct: 255 ---------------------------LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 272 ENCEQLPP-LGKLPSLEQLFIS 292
            N  +LP  + +LP+   + + 
Sbjct: 288 VNLSRLPSLIAQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 39/269 (14%), Positives = 78/269 (28%), Gaps = 50/269 (18%)

Query: 41  EELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETL--CELYNLE 98
                  +  +    +  +      R      + +        +    + L         
Sbjct: 26  RPYHDVLSQWQRHYNADRNRWHSAWR-QANSNNPQIETRTGRALKATADLLEDATQPGRV 84

Query: 99  KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGD 158
            L++     L + P+   +L +++H +      L  +P  + +  GL TL          
Sbjct: 85  ALELRSV-PLPQFPDQAFRLSHLQH-MTIDAAGLMELPDTMQQFAGLETL---------T 133

Query: 159 VDGRKACRLES-------LKNLEHLQVCGIRRLGDV-SDVGEAKRL-ELDKKKYLSCLRL 209
           +       L +       L  L  L +     L ++   +       E      L  LRL
Sbjct: 134 LAR---NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 210 RFDKKKEGGERRKNEDDQLLLEALRPP-----LDLKELEIQFNRGNTVFPSWMTSLTNLK 264
            +                  + +L P       +LK L+I+ +   +     +  L  L+
Sbjct: 191 EWTG----------------IRSL-PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLE 232

Query: 265 SLGLSLCENCEQLPP-LGKLPSLEQLFIS 292
            L L  C      PP  G    L++L + 
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILK 261

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 43/305 (14%), Positives = 85/305 (27%), Gaps = 63/305 (20%)

Query: 96  NLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155
             E L       L+   + + +     +      +S         R              
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS-------AWRQANSNNP------- 58

Query: 156 GGDVDGRKACRLESL-KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKK 214
              ++ R    L++    LE     G   L                   L  + L     
Sbjct: 59  --QIETRTGRALKATADLLEDATQPGRVAL------------------ELRSVPLPQ--- 95

Query: 215 KEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC 274
                           +       L+ + I         P  M     L++L L+     
Sbjct: 96  --------------FPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PL 139

Query: 275 EQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVI--IAFPKLKSL- 330
             LP  +  L  L +L I     +  + +     ++        +L    + +  ++SL 
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199

Query: 331 ----RIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRL 386
                ++ L  L+  +  ++  G  + + +P L  L +  C  L+  P        LKRL
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 387 WILNC 391
            + +C
Sbjct: 259 ILKDC 263

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 34/284 (11%), Positives = 87/284 (30%), Gaps = 55/284 (19%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRF----------PKIVKL 87
           E  E  +     L  +++      T++   +  L  L+ LN+                +L
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 88  PETLCELYNLEKLDISYCFNLKELPE--GIGKLINMKHL-LNRGTNSLRYMPVGIGRLTG 144
            +       ++   + Y  NL+E P    + K++ +  L      N +R++    G    
Sbjct: 541 ADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVH--NKVRHLEA-FGTNVK 596

Query: 145 LRTLGEFRVSAGGDVDGRKACRLESL-----KNLEHLQVCGIR--RLGDVSDVGEAKRLE 197
           L  L          +D     ++E +        + ++  G    +L  + ++  AK + 
Sbjct: 597 LTDL---------KLDY---NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644

Query: 198 LDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWM 257
           +      S  ++                +          ++   + + +N          
Sbjct: 645 VMGSVDFSYNKI-----------GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 258 TSLTNLKSLGLS------LCENCEQLPP--LGKLPSLEQLFISY 293
            + + + ++ LS      + EN  +           L  + + +
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 50/302 (16%)

Query: 28  SGSDHSSLNAEIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKI 84
             +     +   + +       ++   +        P     +++K+V L  L+    K+
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA--SLQKMVKLGLLDCVHNKV 585

Query: 85  VKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMP--VGIGRL 142
             L         L  L + Y   ++E+PE      +    L    N L+Y+P       +
Sbjct: 586 RHLEA-FGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

Query: 143 TGLRTL-------GEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKR 195
             + ++       G    +    +D  K     ++  L + ++                 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV-TLSYNEIQKFPT----ELFATGSP 698

Query: 196 LE-LDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALR---------PP-------LD 238
           +  +     LS   +    +     +  N  +  LL  +                     
Sbjct: 699 ISTII----LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 239 LKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC------EQLPP-LGKLPSLEQLFI 291
           L  +++ +N   + FP+   + + LK+ G+    +        Q P  +   PSL QL I
Sbjct: 755 LSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 292 SY 293
             
Sbjct: 814 GS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 30/257 (11%), Positives = 77/257 (29%), Gaps = 54/257 (21%)

Query: 44  FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDIS 103
            +  T L+ +  +      + +    +  +  Y             +   L +L  +++ 
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ----YENEELSWSNLKDLTDVELY 499

Query: 104 YCFNLKELPEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGR 162
            C N+ +LP+ +  L  ++ L +    N            T L                 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIAC--NRGISAAQLKADWTRLADD-------------- 543

Query: 163 KACRLESLKNLEHLQV--CGIRRLGDVSDVGEAKRLE-LDKKKYLSCLRLRFDKKKEGGE 219
                ++   ++   +    +      + + +  +L  LD        ++R         
Sbjct: 544 ----EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD----CVHNKVRH-------- 587

Query: 220 RRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP 279
                     LEA    + L +L++ +N+   +   +      ++ LG S     + +P 
Sbjct: 588 ----------LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPN 636

Query: 280 ---LGKLPSLEQLFISY 293
                 +  +  +  SY
Sbjct: 637 IFNAKSVYVMGSVDFSY 653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 44  FRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKL 100
           ++ +  L  +D+      SL  +       L +L  +++ +      P        L+  
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDF--RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

Query: 101 DISYCFNL------KELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTL 148
            I +  +       ++ P GI    ++   L  G+N +R +   +     L  L
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQ-LQIGSNDIRKVDEKL--TPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 30/232 (12%)

Query: 67  NIKKLVHLRYLNLRFPKIV-KLPETLCELYNLEKLDISYCFNLKELPEGIG--KLINMKH 123
           ++     +  L+L       ++P+ + +L  L+ L      +        G  +L     
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMS 376

Query: 124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIR- 182
              +    + Y  + +     L      + +        K  + +S  +L+  Q+  +  
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDA-INRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 183 RLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKEL 242
           R+  +S         + +   L  +                             +D ++ 
Sbjct: 436 RITFISK-------AIQRLTKLQIIYFANSP----------------FTYDNIAVDWEDA 472

Query: 243 EIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISY 293
              + +         ++L +L  + L  C N  QLP  L  LP L+ L I+ 
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 35/269 (13%), Positives = 77/269 (28%), Gaps = 50/269 (18%)

Query: 48  TSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET--LCELYNLEKLDI 102
             L  L +       +P +          +  L     K+  +P       +Y +  +D 
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAF---TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

Query: 103 SYCFNLKELPEGIGKLINMKHL-----LNRGTNSLRYMPVGI-GRLTGLRTL-------G 149
           SY   +      I   ++         +    N ++  P  +    + + T+        
Sbjct: 652 SYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 150 EFRVSAGGDVDGRKACRLESLKNLEHLQVCG--IRRLGDVSDVGEAKRLE-LDKKKYLSC 206
               ++    DG      ++   L  + +    +  L D         L  +D    +S 
Sbjct: 711 SIPENSLKPKDGN----YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD----VSY 762

Query: 207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKE-LEIQFNRGNTVFPSWMTSLTNLKS 265
                                L    L+    ++   + + NR    +P+ +T+  +L  
Sbjct: 763 NCFS-----------SFPTQPLNSSQLKA-FGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 266 LGLSLCENC-EQLPPLGKLPSLEQLFISY 293
           L +    N   ++      P L  L I+ 
Sbjct: 811 LQIG--SNDIRKVDE-KLTPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 41/300 (13%), Positives = 82/300 (27%), Gaps = 64/300 (21%)

Query: 44  FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-------------- 89
              +  +  L ++       +   I +L  L+ L+                         
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 90  ------------TLCELYNLEKLDISYCFNLKELPEGIG----KLINMKHL-LNRGTNSL 132
                        L     L   D+     +   PE         I++K   +   TN +
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQD-AINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 133 RYMPVGIGRLTGLRTL---------------GEFRVSAGGDVDGRKACRLESLKNLEHLQ 177
            ++   I RLT L+ +                E   S        +     +LK+L  ++
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 178 VCGIRRLGDVSD-VGEAKRLE-LDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRP 235
           +     +  + D + +   L+ L+    ++C R            +   D   L +    
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLN----IACNRGI-------SAAQLKADWTRLADDEDT 546

Query: 236 PLDLKELEIQFNRGNTVFPSW-MTSLTNLKSLGLSLCENC-EQLPPLGKLPSLEQLFISY 293
              ++   + +N       S  +  +  L  L      N    L   G    L  L + Y
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV--HNKVRHLEAFGTNVKLTDLKLDY 604

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 7e-10
 Identities = 42/263 (15%), Positives = 88/263 (33%), Gaps = 47/263 (17%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
           T+LR L +++ ++    +  +  L  +  LNL     +     L  +  L  L ++    
Sbjct: 110 TNLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-K 166

Query: 108 LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167
           +K++   I  L ++   L+   N +  +   +  LT L                 +   +
Sbjct: 167 VKDVTP-IANLTDLYS-LSLNYNQIEDIS-PLASLTSLHYF---------TAYVNQITDI 214

Query: 168 ESLKNLEHLQVCGIR--RLGDVSDVGEAKRLE--------------LDKKKYLSCLRLRF 211
             + N+  L    I   ++ D+S +    +L               +     L  L +  
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS 274

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
           ++  +             +  L     L  L +  N+        +  LTNL +L LS  
Sbjct: 275 NQISD-------------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS-- 319

Query: 272 ENC-EQLPPLGKLPSLEQLFISY 293
           +N    + PL  L  ++    + 
Sbjct: 320 QNHITDIRPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 47/239 (19%), Positives = 85/239 (35%), Gaps = 41/239 (17%)

Query: 59  SLPTEI--LRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIG 116
           +LP  I  +     L       L+   +  +  T  EL ++ KL ++    +  +  GI 
Sbjct: 7   TLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGE-KVASIQ-GIE 63

Query: 117 KLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHL 176
            L N+++ LN   N +  +   +  L  L  L          +   K   + +L+NL +L
Sbjct: 64  YLTNLEY-LNLNGNQITDIS-PLSNLVKLTNL---------YIGTNKITDISALQNLTNL 112

Query: 177 QVCGIR--RLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALR 234
           +   +    + D+S +    ++          L L  +                 L  L 
Sbjct: 113 RELYLNEDNISDISPLANLTKMYS--------LNLGANHNLS------------DLSPLS 152

Query: 235 PPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISY 293
               L  L +  ++   V P  + +LT+L SL L+     E + PL  L SL       
Sbjct: 153 NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN-QIEDISPLASLTSLHYFTAYV 208

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 43/264 (16%), Positives = 87/264 (32%), Gaps = 51/264 (19%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
                  + + S+   +    ++L  +  L +   K+  +   +  L NLE L+++    
Sbjct: 22  AEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-Q 77

Query: 108 LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDG---RKA 164
           + ++   +  L+ + +L     N +  +   +  LT LR L          ++       
Sbjct: 78  ITDISP-LSNLVKLTNLYIGT-NKITDIS-ALQNLTNLREL---------YLNEDNISDI 125

Query: 165 CRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLE--------------LDKKKYLSCLRLR 210
             L +L  +  L +     L D+S +     L               +     L  L L 
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185

Query: 211 FDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSL 270
           +++ ++             +  L     L       N+   + P  + ++T L SL +  
Sbjct: 186 YNQIED-------------ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG- 229

Query: 271 CENC-EQLPPLGKLPSLEQLFISY 293
             N    L PL  L  L  L I  
Sbjct: 230 -NNKITDLSPLANLSQLTWLEIGT 252

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 43/249 (17%), Positives = 82/249 (32%), Gaps = 43/249 (17%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
             L  L +    +    +  ++ L +LR L L    I  +   L  L  +  L++    +
Sbjct: 88  VKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGAN-H 143

Query: 108 LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167
                  +  +  + +L     + ++ +   I  LT L +L          ++  +   +
Sbjct: 144 NLSDLSPLSNMTGLNYL-TVTESKVKDVT-PIANLTDLYSL---------SLNYNQIEDI 192

Query: 168 ESLKNLEHLQV--CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNED 225
             L +L  L      + ++ D++ V    RL       L     +               
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITPVANMTRL-----NSLKIGNNKITD------------ 235

Query: 226 DQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPPLGKLP 284
               L  L     L  LEI  N+ + +    +  LT LK L +    N    +  L  L 
Sbjct: 236 ----LSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVG--SNQISDISVLNNLS 287

Query: 285 SLEQLFISY 293
            L  LF++ 
Sbjct: 288 QLNSLFLNN 296

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 55/324 (16%), Positives = 104/324 (32%), Gaps = 42/324 (12%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKI--VKLPETLCELY 95
            +    F   +SL+ L   + +L +     I  L  L+ LN+    I   KLPE    L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 96  NLEKLDISYCFNLKELPEGI----GKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF 151
           NLE LD+S    ++ +         ++  +   L+   N + ++  G  +   L  L   
Sbjct: 150 NLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
                 +V       L  L+    L +   R  G++    +   LE      +   RL +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVH-RLVLGEFRNEGNLEKF-DKSALEGLCNLTIEEFRLAY 266

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFP-SWMTSLTNLKSLGLSL 270
                      +     +++      ++    +       V   S+     +L+ +    
Sbjct: 267 L----------DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 271 CENCEQ-----------------LPPLGKLPSLEQLFISY--MSSVKRVGDEFLGVESDR 311
            +                           LPSLE L +S   +S          G  S +
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 312 H-DSSSSSLVII--AFPKLKSLRI 332
           + D S + ++ +   F  L+ L  
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEH 400

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)

Query: 43  LFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVK--LPETLCELYNL 97
           +F    +L  LD+S          I      L  L  L +      +  LP+   EL NL
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 98  EKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGI-GRLTGLRTL 148
             LD+S C  L++L       L +++ L +    N L+ +P GI  RLT L+ +
Sbjct: 473 TFLDLSQC-QLEQLSPTAFNSLSSLQVLNMAS--NQLKSVPDGIFDRLTSLQKI 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 44  FRESTSLRALDVS--QVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLD 101
             +  SL  LD+S   +S      ++      L+YL+L F  ++ +      L  LE LD
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 102 ISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVGI-GRLTGLRTL 148
             +  NLK++ E     +++++L  L+      R    GI   L+ L  L
Sbjct: 403 FQHS-NLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 53/319 (16%), Positives = 108/319 (33%), Gaps = 27/319 (8%)

Query: 31  DHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRN-IKKLVHLRYLNLRFPKIVKL-P 88
             +      V  LF   T+L+ L +  V   +EI R     L  L  L ++   +     
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 89  ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTL 148
           ++L  + ++  L +        L E    +++    L     +L         +  + + 
Sbjct: 166 QSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 149 GEFRVSAGGDVDGRKACRLESLKNL------EHLQVCGIRRLGDVSDVGEAKRLELDKKK 202
            +     G  +       L  L              C +  LGD +        EL K +
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 203 YLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTN 262
            ++  RL            +      L         +K + ++ ++   V  S+   L +
Sbjct: 285 TVTIRRLHI---------PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 263 LKSLGLSLC----ENCEQLPPLGKLPSLEQLFISY--MSSVKRVGDEFLGVESDRH-DSS 315
           L+ L LS      E  +     G  PSL+ L +S   + S+++ G+  L +++    D S
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 316 SSSLVII--AFPKLKSLRI 332
            ++   +  +    + +R 
Sbjct: 396 RNTFHPMPDSCQWPEKMRF 414

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 39/265 (14%), Positives = 88/265 (33%), Gaps = 18/265 (6%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRN-IKKLVHLRYLNL-RFPKIVKLPE-TLCEL 94
            +    F   +SL+ L++      T  + +    L +L+ L +       ++       L
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 95  YNLEKLDISYCFNLKELPEG-IGKLINMKHL-LNRGTNSLRYMPVGI-GRLTGLRTLGEF 151
            +L +L+I    +L+      +  + ++ HL L+   +   ++       L+ +R L E 
Sbjct: 148 TSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHL--SESAFLLEIFADILSSVRYL-EL 203

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
           R +             E    ++ L   G     +  +        + +   +       
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
           +     G+   +E D +        + ++ L I          +  + L  +K + +   
Sbjct: 264 NGL---GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE-- 318

Query: 272 ENCEQLPPLG---KLPSLEQLFISY 293
            +   L P      L SLE L +S 
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSE 343

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRN---IKKLVHLRYLNL---RFPKIVKLPETL 91
            +     +   SL  LD+S+  +  E L+N         L+ L L       + K  E L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 92  CELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTL 148
             L NL  LDIS       +P+       M+  LN  +  +R +   I     L  L
Sbjct: 384 LTLKNLTSLDISRN-TFHPMPDSCQWPEKMRF-LNLSSTGIRVVKTCI--PQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 43  LFRESTSLRALDVSQVSLPT--EILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKL 100
                 SL+ L +SQ  L +  +    +  L +L  L++       +P++      +  L
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415

Query: 101 DISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGL 145
           ++S    ++ +   I + + +  + N   N+L    + + RL  L
Sbjct: 416 NLSST-GIRVVKTCIPQTLEVLDVSN---NNLDSFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 57/329 (17%), Positives = 102/329 (31%), Gaps = 66/329 (20%)

Query: 49  SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET-LCELYNLEKLDISYCFN 107
           +    D    S  T I   +     ++ L+L F KI  +    L    NL+ L +     
Sbjct: 6   ASGVCDGRSRSF-TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-R 61

Query: 108 LKELPEGI-GKLINMKHL-LNRGTNSLRYMPVG-IGRLTGLRTLGEFRVSAGGDVDGRKA 164
           +  +       L +++HL L+   N L  +     G L+ L+ L                
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSD--NHLSSLSSSWFGPLSSLKYL---------------- 103

Query: 165 CRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNE 224
                     +L     + LG  S       L+         LR+               
Sbjct: 104 ----------NLMGNPYQTLGVTSLFPNLTNLQT--------LRIG----------NVET 135

Query: 225 DDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP--LGK 282
             ++          L ELEI+           + S+ ++  L L L E+   L       
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADI 194

Query: 283 LPSLEQLFISY--MSSVKRVGDEFLGVESDRHDSSSSSLVI--IAFPKLKSL--RIEGLM 336
           L S+  L +    ++  +        V S     +    V+   +F +L  L   I  L 
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 337 ELEEWD---YGITRTGNTVINIMPHLSSL 362
           E+E  D    G+     +  +++  L  +
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKV 283

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 29/146 (19%)

Query: 32  HSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETL 91
           + S +  + E    E+ ++R L + Q  L  ++      L  ++ + +   K+  +P + 
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329

Query: 92  CE-LYNLEKLDISYCF--------------------------NLKELPEGIGKLINMKHL 124
            + L +LE LD+S                             +L+ + +    L+ +K+L
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 125 --LNRGTNSLRYMPVGIGRLTGLRTL 148
             L+   N+   MP        +R L
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFL 415

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 47/271 (17%), Positives = 94/271 (34%), Gaps = 24/271 (8%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNI-KKLVHLRYLNLRFPKIVKLPE-TLCELY 95
            +    F     L+ L++     P  I +   + L +LR L+L   KI  L       L+
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97

Query: 96  NLEKLDISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVG--IGRLTGLRTLG-- 149
           +L +L + +C  L +     G   N+K L  L+   N +R + +    G+L  L+++   
Sbjct: 98  HLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 150 --EFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL 207
             +  +    +++  +   L    +L          L     V   K +   +   L  L
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFF-SLAANS------LYSRVSVDWGKCMNPFRNMVLEIL 209

Query: 208 RLRFDK-KKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSL--TNLK 264
            +  +    +      N   +    +L     +      F+       +    L  ++++
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 265 SLGLSLCENCEQLPP--LGKLPSLEQLFISY 293
            L LS       L       L  L+ L ++Y
Sbjct: 270 HLDLSHG-FVFSLNSRVFETLKDLKVLNLAY 299

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 30/270 (11%)

Query: 39  IVEELFRESTSLRALDVSQVSLPTEILRNI-KKLVHLRYLNLRFPKIVKLP-ETLCELYN 96
           +   +F     L+ L+++   +  +I       L +L+ LNL +  + +L       L  
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 97  LEKLDISYCFNLKELPEGI-GKLINMKHL--------LNRGTNSLRYMPVGIGRLTGLRT 147
           +  +D+    ++  + +     L  ++ L              S+  + +   +L  L  
Sbjct: 340 VAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398

Query: 148 LG----EFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY 203
           +        +S     +      L  + +L+ L +    R    S           ++ +
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLF 457

Query: 204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNL 263
           L    L+              + +L  +       L+ L +  N  N++ P   + LT L
Sbjct: 458 LGENMLQL-----------AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 264 KSLGLSLCENCEQLPPLGKLPSLEQLFISY 293
           + L L+       L       +LE L IS 
Sbjct: 507 RGLSLNSN-RLTVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 41/266 (15%), Positives = 82/266 (30%), Gaps = 33/266 (12%)

Query: 36  NAEIVEELFRESTSLRALDVSQVSLPT-EILRNIKKLVHLRYLNLRFPKIVKLP-ETLCE 93
           +A + +  FR   +L  LD+S+  + +  +  +  KL  L+ ++    +I  +    L  
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 94  LY--NLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF 151
           L    L    ++       +    GK +N    +      L  +      ++G     + 
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-----VLEIL-----DVSGNGWTVDI 220

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
             +    +   +A  L    ++      G   + D              +  +  L L  
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAG-FGFHNIKDPD----QNTFAGLARSSVRHLDLSH 275

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
                           L         DLK L + +N+ N +       L NL+ L LS  
Sbjct: 276 -----------GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 272 ENCEQLPP--LGKLPSLEQLFISYMS 295
               +L       LP +  + +    
Sbjct: 325 -LLGELYSSNFYGLPKVAYIDLQKNH 349

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 43/293 (14%), Positives = 92/293 (31%), Gaps = 45/293 (15%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRN--IKKLVHLRYLNLRFPKI--VKLPETLCE 93
            +  + F+    L  L +    L   +L++   + L  L  L+L   +I  + L  +  +
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146

Query: 94  LYNLEKLDISYCFNLKELPEGIGKLINMKHLLN-----------------RGTNSLRYMP 136
           L +L+ +D S    +  + E   + +  K L                   +  N  R M 
Sbjct: 147 LNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 137 VGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRL 196
           + I  ++G     +   +    +   +A  L    ++      G   + D          
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-FGFHNIKDPD----QNTF 260

Query: 197 ELDKKKYLSCLRLRFDKKKEGGER-------------RKNEDDQLLLEALRPPLDLKELE 243
               +  +  L L          R               N+ +++  EA     +L+ L 
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 244 IQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPP--LGKLPSLEQLFISY 293
           + +N    ++ S    L  +  + L   +N    +       L  L+ L +  
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQ--KNHIAIIQDQTFKFLEKLQTLDLRD 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 31/296 (10%), Positives = 83/296 (28%), Gaps = 60/296 (20%)

Query: 32  HSSLNAEIVEELFRESTS-LRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET 90
                   V+   RE  S L    ++       I ++ +  +    +      I  + + 
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 91  LCELYNLEKLDIS-------------------YCFNLKELPEGIGKLINMKHLLNRGTNS 131
           +  L  L +  +                    Y    K        L ++  +      +
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 132 LRYMPVGIGRLTGLRTLG----EFRVSAGGDVDGRKACRLESLKNLEHLQV--CGIRRLG 185
           L  +P  +  L  ++ +               D +        + ++ + +    ++   
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 186 DVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPL----DLKE 241
             + + + K+L +        L   +           N+     LE   P       L  
Sbjct: 322 VETSLQKMKKLGM--------LECLY-----------NQ-----LEGKLPAFGSEIKLAS 357

Query: 242 LEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPP---LGKLPSLEQLFISY 293
           L + +N+   +  ++      +++L  +   N  + +P       +  +  +  SY
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFA--HNKLKYIPNIFDAKSVSVMSAIDFSY 411

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 23/267 (8%), Positives = 74/267 (27%), Gaps = 50/267 (18%)

Query: 46  ESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNL-----RFPKIVKLPETLCELYNLEKL 100
            +  +  L +        +   I +L  L  L L     +  + +  P+ +    + E+ 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 101 DISYCFNLKELPEGIGKLI--NMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGD 158
                   K   +   +    ++           + +            +          
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI---------G 189

Query: 159 VDGRKACRL-ESLKNLEHLQVCGIR--RLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKK 215
                   + +++  L  L+   +        +     +    +  +      L++D  K
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 216 EGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLS------ 269
           +                      L ++E+      T  P+++ +L  ++ + ++      
Sbjct: 250 D----------------------LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 270 ---LCENCEQLPPLGKLPSLEQLFISY 293
              L ++ + L        ++ ++I Y
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGY 314

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 31/274 (11%), Positives = 87/274 (31%), Gaps = 53/274 (19%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE---------TLCELYNLE 98
             L  ++V      T++   +K L  ++ +N+   + +   +                ++
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 99  KLDISYCFNLKEL--PEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155
            + I Y  NLK       + K+  +  L      N L       G    L +L       
Sbjct: 309 IIYIGYN-NLKTFPVETSLQKMKKLGMLECLY--NQLEGKLPAFGSEIKLASL------- 358

Query: 156 GGDVDGRKACRLES--------LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL 207
             ++      ++           + +E+L      +L  + ++ +AK +       +S +
Sbjct: 359 --NLAY---NQITEIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAKSV-----SVMSAI 407

Query: 208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLG 267
              +++      +  +     L       +++  + +  N+ +       ++ + L S+ 
Sbjct: 408 DFSYNEIGSVDGKNFDP----LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 268 LS------LCENCEQLPP--LGKLPSLEQLFISY 293
           L       + +N  +           L  + + +
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 16/117 (13%)

Query: 42  ELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLE 98
           E F+ +  L ++D+       L  +       L +L  ++L +    K P        L+
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDF--RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLK 539

Query: 99  KLDISYCFNL------KELPEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTL 148
              I    +       +E PEGI    ++  L +    N +R +   I     +  L
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS--NDIRKVNEKI--TPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 14/112 (12%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLR------FPK--IVKLPETLCELYNLEK 99
            ++ ++++S   +             L  +NL        PK  +    E     Y L  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 100 LDISYCFNLKELPEGI--GKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTL 148
           +D+ +   L +L +      L  +  + L+   NS    P      + L+  
Sbjct: 493 IDLRFN-KLTKLSDDFRATTLPYLVGIDLSY--NSFSKFPTQPLNSSTLKGF 541

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 22/130 (16%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRF--------PKIVK 86
           EI       +  +  L  +      +P     + K +  +  ++  +             
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIF--DAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 87  LPETLCELYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNR------GTNSLRYMPVG 138
           L  T  +  N+  +++S    + + P+ +      +  + L          NSL+     
Sbjct: 425 LDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 139 IGRLTGLRTL 148
                 L ++
Sbjct: 484 FKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 34/275 (12%), Positives = 73/275 (26%), Gaps = 54/275 (19%)

Query: 48  TSLRALDVSQ---VSLPT-----EILRNIKKLVHLRYLNLRFPKIVKL--PETLCELYNL 97
             ++ ++V+    +S        + L +      ++ + + +  +       +L ++  L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGI-GRLTGLRT-------LG 149
             L+  Y   L+      G  I +  L N   N +  +P    G    +         L 
Sbjct: 333 GMLECLYN-QLEGKLPAFGSEIKLASL-NLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390

Query: 150 EFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRL 209
                             +S+  +  +               +       K   +S + L
Sbjct: 391 YIPNIFD----------AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 210 RFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNR-------GNTVFPSWMTSLTN 262
                        N+  +   E       L  + +  N                  +   
Sbjct: 441 S-----------NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 263 LKSLGLSLCENC-EQLPP---LGKLPSLEQLFISY 293
           L S+ L    N   +L        LP L  + +SY
Sbjct: 490 LTSIDLR--FNKLTKLSDDFRATTLPYLVGIDLSY 522

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 12/113 (10%)

Query: 38  EIVEELFRESTSLRALDVSQV------SLPTEILRNIKKLVHLRYLNLRFPKIVKLPETL 91
           +   +    S++L+   +             E    I     L  L +    I K+ E +
Sbjct: 527 KFPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585

Query: 92  CELYNLEKLDISYCFNLKELPEGIGKLINMKHLL---NRGTNSLRYMPVGIGR 141
               N+  LDI    N+      +   I     +   ++  +      + I R
Sbjct: 586 TP--NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 45/280 (16%), Positives = 79/280 (28%), Gaps = 38/280 (13%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYN 96
            + E       +L+ L   Q  + +     +     L  L L    I  +          
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 97  LEKLDISYCFNLKELPEG-IGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTL----GE 150
           L+ LD      +  L +  +  L    +L LN   N +  +  G       ++L     +
Sbjct: 155 LKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 151 FRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLR 210
             +     +       L      E +    I               E   +  +  + L 
Sbjct: 214 NLLVIFKGLKNSTIQSLWLG-TFEDMDDEDISPA----------VFEGLCEMSVESINL- 261

Query: 211 FDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSL 270
                     +K+    +          L+EL++      +  PS +  L+ LK L LS 
Sbjct: 262 ----------QKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLS- 309

Query: 271 CENC--EQLPP--LGKLPSLEQLFISYMSSVKRVGDEFLG 306
                 E L        PSL  L I   +    +G   L 
Sbjct: 310 --ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 50/267 (18%), Positives = 88/267 (32%), Gaps = 38/267 (14%)

Query: 39  IVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNL 97
           I    F   + L+ LD++   L +E+   +  L  L+ L L   K   L + +     +L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 98  EKLDISYCFNLKELPEG-IGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155
             L I       EL  G +  L N++ L L+   + +        +L  L  L    +S 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSH--DDIETSDCCNLQLRNLSHLQSLNLS- 384

Query: 156 GGDVDGRKACRLESLKNLEHL--QVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDK 213
             +    K    +    LE L      ++     S       L++        L L    
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV--------LNLSH-- 434

Query: 214 KKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNR---GNTVFPSWMTSLTNLKSLGLSL 270
                    +  D    +       L+ L +Q N    GN    + + +L  L+ L LS 
Sbjct: 435 ---------SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS- 484

Query: 271 CENC--EQLPP--LGKLPSLEQLFISY 293
              C    +       L  +  + +S+
Sbjct: 485 --FCDLSSIDQHAFTSLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 42/266 (15%), Positives = 81/266 (30%), Gaps = 35/266 (13%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYN 96
            I         +L +L +    + +  L        L+ L+ +   I  L  E +  L  
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 97  LEKLDISYCFN-LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIG--RLTGLRTLG---- 149
              L ++   N +  +  G       + L   GT +L  +  G+    +  L        
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 150 EFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRL 209
           +    +    +G     +ES+ NL+         +   +               L  L L
Sbjct: 239 DDEDISPAVFEGLCEMSVESI-NLQKHY---FFNISSNT---------FHCFSGLQELDL 285

Query: 210 RFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLS 269
                 E            L   L     LK+L +  N+   +     ++  +L  L + 
Sbjct: 286 TATHLSE------------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 270 LCENCEQLPP--LGKLPSLEQLFISY 293
                 +L    L  L +L +L +S+
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSH 359

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 51/259 (19%), Positives = 85/259 (32%), Gaps = 67/259 (25%)

Query: 48  TSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISY 104
            S+ ++++ +    ++ +           L+ L+L    + +LP  L  L  L+KL +S 
Sbjct: 254 MSVESINLQKHYFFNISSNTFHC---FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

Query: 105 CFNLKELPEG-IGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDG- 161
               + L +       ++ HL +   T  L      +  L  LR L         D+   
Sbjct: 311 N-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL---------DLSHD 360

Query: 162 ---RKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGG 218
                 C    L+NL HLQ                             L L +       
Sbjct: 361 DIETSDCCNLQLRNLSHLQS----------------------------LNLSY------- 385

Query: 219 ERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFP-SWMTSLTNLKSLGLSLCENC-EQ 276
               NE   L  EA +    L+ L++ F R       S   +L  LK L LS   +  + 
Sbjct: 386 ----NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS--HSLLDI 439

Query: 277 LPP--LGKLPSLEQLFISY 293
                   LP+L+ L +  
Sbjct: 440 SSEQLFDGLPALQHLNLQG 458

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 41/285 (14%), Positives = 90/285 (31%), Gaps = 44/285 (15%)

Query: 47  STSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDI 102
             S   L+ S     ++          L++L +L+L   +I  +  +T    + L+ L +
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSR---LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 103 SY-------------CFNLKEL-----------PEGIGKLINMKHL-LNRGTNSLRYMPV 137
           +                 LK L              +     ++ L L    N +  + +
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS--NHISSIKL 146

Query: 138 G-IGRLTGLRTLG----EFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGE 192
                   L+ L          +  D+   +     SL NL    + GI      S V +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL-NLNGNDIAGIEPGAFDSAVFQ 205

Query: 193 AKRLELDKKKYLSCLRLRFDKKK--EGGERRKNEDDQLLLEALR--PPLDLKELEIQFNR 248
           +      +   +    L+    +    G     +D+ +          + ++ + +Q + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 249 GNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISY 293
              +  +     + L+ L L+     E    L  L +L++L +S 
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 37/273 (13%), Positives = 82/273 (30%), Gaps = 42/273 (15%)

Query: 33  SSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC 92
           + +     +    +S +        V         I+ L    + ++    I        
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 93  ELYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGE 150
              ++E +++        +          ++ L L      L  +P G+  L+ L+ L  
Sbjct: 252 CEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTA--THLSELPSGLVGLSTLKKL-- 306

Query: 151 FRVSAGGDVDGRKACRLES--------LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKK 202
                   +      + E+          +L HL + G  +  ++   G  + LE  ++ 
Sbjct: 307 -------VLSA---NKFENLCQISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLREL 355

Query: 203 YLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTN 262
            LS   +                       LR    L+ L + +N   ++          
Sbjct: 356 DLSHDDIET--------------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 263 LKSLGLSLC--ENCEQLPPLGKLPSLEQLFISY 293
           L+ L L+    +  +   P   L  L+ L +S+
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 34/247 (13%)

Query: 32  HSSLNAEIVEELFRESTSLRALDVS--QVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-P 88
            ++   E+         +LR LD+S   +         ++ L HL+ LNL + + + L  
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 89  ETLCELYNLEKLDISYCFNLKELPEG--IGKLINMKHL-LNRGTNSLRYMPVGI-GRLTG 144
           E   E   LE LD+++   LK          L  +K L L+   + L      +   L  
Sbjct: 394 EAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSH--SLLDISSEQLFDGLPA 450

Query: 145 LRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQV--CGIRRLGDVSDVGEAKRLELDKKK 202
           L+ L   + +     + +K   L++L  LE L +  C +  +   +             K
Sbjct: 451 LQHL-NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA---------FTSLK 500

Query: 203 YLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTN 262
            ++ + L             N      +EAL   L    L +  N  + + PS +  L+ 
Sbjct: 501 MMNHVDLSH-----------NRLTSSSIEAL-SHLKGIYLNLASNHISIILPSLLPILSQ 548

Query: 263 LKSLGLS 269
            +++ L 
Sbjct: 549 QRTINLR 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 42/262 (16%), Positives = 81/262 (30%), Gaps = 24/262 (9%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKI--VKLPETLCELY 95
                 F   TSL  L   +  L +     I +L+ L+ LN+    I   KLP     L 
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 96  NLEKLDISYCFNLKELPEG-IGKLINMKHL---LNRGTNSLRYMPVGIGRLTGLRTLGEF 151
           NL  +D+SY   ++ +    +  L     +   L+   N + ++     +   L  L   
Sbjct: 154 NLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
                 ++       L  L     L +   +   ++     +    L     ++    R 
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVH-RLILGEFKDERNLEIFEPSIMEGLCD---VTIDEFRL 268

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
                        D    +       ++  + +       +           +SL +  C
Sbjct: 269 T---------YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV--PKHFKWQSLSIIRC 317

Query: 272 ENCEQLPPLGKLPSLEQLFISY 293
              +Q P L  LP L+ L ++ 
Sbjct: 318 -QLKQFPTLD-LPFLKSLTLTM 337

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 37/275 (13%), Positives = 82/275 (29%), Gaps = 36/275 (13%)

Query: 42  ELFRESTSLRALDVSQ---VSLPTEILRNIKKL-VHLRYLNLRFPKIVKLPETLCELYNL 97
             F   T+L  +D+S     ++    L+ +++       L++    I  + +   +   L
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMP----VGIGRLTGLRTLGEFRV 153
            +L +   FN   + +   + +   H+        +            + GL  +     
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 154 S-AGGDVDGRKACRLESLKNLEHLQVCG--IRRLGDVSDVGEAKRLELDKKK-------- 202
                +       +   L N+  + + G  I+ L DV    + + L + + +        
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 203 --YLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS--WMT 258
             +L  L L  +K               +         L  L++  N  +          
Sbjct: 327 LPFLKSLTLTMNKGS-------------ISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 259 SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISY 293
              +L+ L LS             L  L+ L   +
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 42/259 (16%), Positives = 75/259 (28%), Gaps = 40/259 (15%)

Query: 44  FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDIS 103
             +    ++L + +  L  +       L  L+ L L   K   +      L +L  LD+S
Sbjct: 303 VPKHFKWQSLSIIRCQL-KQF--PTLDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLS 358

Query: 104 YCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVGIGRLTGLRTL--GEFRVSAGGDV 159
               L          +    L  L+   N    M      L  L+ L      +    + 
Sbjct: 359 RN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 160 DGRKACRLESLKNLEHL--QVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEG 217
                    SL+ L +L       +   D                 L+ L++  +  K+ 
Sbjct: 418 SA-----FLSLEKLLYLDISYTNTKIDFDGI---------FLGLTSLNTLKMAGNSFKDN 463

Query: 218 GERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQ 276
                      L        +L  L++   +   +      +L  L+ L +S   N    
Sbjct: 464 ----------TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS--HNNLLF 511

Query: 277 LPP--LGKLPSLEQLFISY 293
           L      +L SL  L  S+
Sbjct: 512 LDSSHYNQLYSLSTLDCSF 530

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 32  HSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK--LPE 89
           HS+L        F     L  LD+S  +   +       L  L  L +         L  
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 90  TLCELYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVG-IGRLTGLR 146
                 NL  LD+S C  L+++  G+   L  ++ L ++   N+L ++      +L  L 
Sbjct: 468 VFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSH--NNLLFLDSSHYNQLYSLS 524

Query: 147 TL 148
           TL
Sbjct: 525 TL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 13/126 (10%)

Query: 31  DHSSLNAEIVEELFRESTSLRALDVS----QVSLPTEILRNIKKLVHLRYLNLRFPKIVK 86
           D S   A I+   F     L+ LD      +         +   L  L YL++ +     
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS---LEKLLYLDISYTNTKI 438

Query: 87  LP-ETLCELYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGI-GRL 142
                   L +L  L ++           +     N+  L L++    L  +  G+   L
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK--CQLEQISWGVFDTL 496

Query: 143 TGLRTL 148
             L+ L
Sbjct: 497 HRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 13/109 (11%)

Query: 47  STSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDI 102
            +S + +D+S      L +    N      L++L+L   +I  +  +    L++L  L +
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSN---FSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 103 SYCFNLKELPEG-IGKLINMKHL-LNRGTNSLRYMPVG-IGRLTGLRTL 148
           +    ++    G    L ++++L        L  +    IG+L  L+ L
Sbjct: 88  TGN-PIQSFSPGSFSGLTSLENLVAVE--TKLASLESFPIGQLITLKKL 133

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 32  HSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ET 90
            +S     +  +F  +T+L  LD+S+  L          L  L+ LN+    ++ L    
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

Query: 91  LCELYNLEKLDISYCFNLKELPEGIGKLI-NMKHL 124
             +LY+L  LD S+   ++     +     ++   
Sbjct: 517 YNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFF 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 54/302 (17%), Positives = 94/302 (31%), Gaps = 47/302 (15%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKI--VKLPETLCELY 95
            +    F   +SL+ L   + +L +     I  L  L+ LN+    I   KLPE    L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 96  NLEKLDISYCFNLKEL-PEGIGKLINMKHL---LNRGTNSLRYMPVGIGRLTGLRTLGEF 151
           NLE LD+S    ++ +    +  L  M  L   L+   N + ++  G  +   L  L   
Sbjct: 150 NLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
                 +V          ++ L  L+V                   L   ++ +   L  
Sbjct: 209 NNFDSLNVMK------TCIQGLAGLEV-----------------HRLVLGEFRNEGNL-- 243

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRG-NTVFPSWMTSLTNLKSLGLSL 270
                       + D+  LE L   L ++E  + +              LTN+ S  L  
Sbjct: 244 -----------EKFDKSALEGLC-NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 271 CENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSL 330
               E++         + L +       +     L        +S+      +   L SL
Sbjct: 292 VTI-ERVKDFSYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 331 RI 332
             
Sbjct: 350 EF 351

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 47  STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYC 105
             S + LD+S   L      +      L+ L+L   +I  +       L +L  L ++  
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 106 FNLKELPEGIGKLINMKHL-LNRGTNSLRYMPVG-IGRLTGLRTL 148
                       L +++ L       +L  +    IG L  L+ L
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVE--TNLASLENFPIGHLKTLKEL 129

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 53/267 (19%), Positives = 84/267 (31%), Gaps = 42/267 (15%)

Query: 42  ELFRESTSLRALDVSQ---VSLPTEILRNIKKL-VHLRYLNLRFPKIVKLPETLCELYNL 97
           E F   T+L  LD+S     S+    LR + ++ +    L+L    +  +     +   L
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 98  EKLDISYC-FNLKELPEGIGKLINMKHL---LNRGTNSLRYMPVGIGRLTGLRTL--GEF 151
            KL +     +L  +   I  L  ++     L    N           L GL  L   EF
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQV--CGIRRLGDVSDVGEAKRLELDKKKYLSCLRL 209
           R++               L N+    +    I R+ D S     + LEL           
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN--------- 313

Query: 210 RFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLS 269
                         +  Q     L+    LK L    N+G   F      L +L+ L LS
Sbjct: 314 -------------CKFGQFPTLKLK---SLKRLTFTSNKGGNAFSEV--DLPSLEFLDLS 355

Query: 270 LCENCEQLPP---LGKLPSLEQLFISY 293
                 +           SL+ L +S+
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSF 382

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 32  HSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK--LPE 89
           HS+L       +F    +L  LD+S              L  L  L +      +  LP+
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 90  TLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHL-LNRGTNSLRYMPVG-IGRLTGLR 146
              EL NL  LD+S C  L++L       L +++ L ++   N+   +       L  L+
Sbjct: 465 IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH--NNFFSLDTFPYKCLNSLQ 521

Query: 147 TL 148
            L
Sbjct: 522 VL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 44  FRESTSLRALDVS--QVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLD 101
             +  SL  LD+S   +S      ++      L+YL+L F  ++ +      L  LE LD
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 102 ISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVG-IGRLTGLRTL 148
             +  NLK++ E     +++++L  L+      R    G    L+ L  L
Sbjct: 403 FQHS-NLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 31  DHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PE 89
             +S     + ++F E  +L  LD+SQ  L          L  L+ LN+       L   
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 90  TLCELYNLEKLDISY 104
               L +L+ LD S 
Sbjct: 513 PYKCLNSLQVLDYSL 527

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 42/272 (15%), Positives = 84/272 (30%), Gaps = 32/272 (11%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCE 93
                   +  +L+ L +S     +L +E L        L+ L L   +I +  P     
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFA-NSSLKKLELSSNQIKEFSPGCFHA 193

Query: 94  LYNLEKLDISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVGIGRLTGLRTLGEF 151
           +  L  L ++       L E +   +    +  L+   + L               L   
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQVCG--IRRLGDVSDVGEAKRLE-LDKKKYLSCLR 208
            +S   +++         L  LE+  +    I+ L   S +     +  L+ K+  +   
Sbjct: 254 DLS-YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQS 311

Query: 209 LRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGL 268
           +                 ++   + +    L+ L ++ N    +  +  T L NLK L L
Sbjct: 312 ISL-----------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 269 SLCENCEQLPPLG-------KLPSLEQLFISY 293
           S   +   L  L            L  L ++ 
Sbjct: 361 S--NSFTSLRTLTNETFVSLAHSPLHILNLTK 390

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 43/272 (15%), Positives = 91/272 (33%), Gaps = 36/272 (13%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYN 96
           ++ ++ F   T+L  L +   S+         K  +L  L+L    +      T  +L N
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 97  LEKLDISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVG-IGRLTGLRTLGEFRV 153
           L++L +S    ++ L      +     L  L   +N ++    G    +  L  L     
Sbjct: 147 LQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL-FLNN 204

Query: 154 SAGGDVDGRKACRLESLKNLEHLQV--CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
              G     K C   +  ++ +L +    +    + + +G        K   L+ L L +
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-------KWTNLTMLDLSY 257

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLS-- 269
                      N  + +  ++      L+   +++N    +F   +  L N++ L L   
Sbjct: 258 -----------NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 270 ------LCENCEQLPP--LGKLPSLEQLFISY 293
                    +  ++       L  LE L +  
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 44/267 (16%), Positives = 87/267 (32%), Gaps = 37/267 (13%)

Query: 39  IVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNL 97
           +  EL ++   L+ L++    L     +      +L  L+L    I K+      +  NL
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 98  EKLDISYCFNLKELPEG-IGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA 155
             LD+S+   L     G   +L N++ L L+   N ++ +      +    +L +  +S 
Sbjct: 124 ITLDLSHN-GLSSTKLGTQVQLENLQELLLSN--NKIQALKSEELDIFANSSLKKLELS- 179

Query: 156 GGDVDGRKACRL-----ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLR 210
                   + ++          +  L    +  +     + E   LEL     +  L L 
Sbjct: 180 --------SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLS 230

Query: 211 FDKKKEGGERRKNEDDQLLLEALR--PPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGL 268
                       ++               +L  L++ +N  N V       L  L+   L
Sbjct: 231 N-----------SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 269 SLCENCEQLPP--LGKLPSLEQLFISY 293
               N + L    L  L ++  L +  
Sbjct: 280 EYN-NIQHLFSHSLHGLFNVRYLNLKR 305

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 47  STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYC 105
            T++  L+++   L      N  +   L  L++ F  I KL PE   +L  L+ L++ + 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 106 FNLKELPEG-IGKLINMKHL-LNRGTNSLRYMPVG-IGRLTGLRTL 148
             L +L +       N+  L L    NS++ +      +   L TL
Sbjct: 84  -ELSQLSDKTFAFCTNLTELHLMS--NSIQKIKNNPFVKQKNLITL 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 47/266 (17%), Positives = 97/266 (36%), Gaps = 52/266 (19%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRN-IKKLVHLRYLNLRFPKIVKL-PETLCELY 95
           +I  + F     L  LD+    +  E+     + L ++  + L + K ++L   +   + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 96  NLEKLDISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVGIGRLTGLRTLGEFRV 153
           +L++L +     LK +         +++L  L+   N++  +   +              
Sbjct: 455 SLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-------------- 499

Query: 154 SAGGDVDGRKACRLESLKNLEHLQVCG--IRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
                        LE L+ LE L +    + RL   ++ G      L    +L  L L  
Sbjct: 500 -------------LEGLEKLEILDLQHNNLARLWKHANPGG-PIYFLKGLSHLHILNLES 545

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
                      N  D++ +E  +   +LK +++  N  NT+  S   +  +LKSL L   
Sbjct: 546 -----------NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ-- 592

Query: 272 ENC-EQLPP---LGKLPSLEQLFISY 293
           +N    +          +L +L + +
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRF 618

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 17/107 (15%)

Query: 48  TSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISY 104
             L  ++        LP            L  L++R  ++  LPE      +LE LD+S 
Sbjct: 140 ALLEYINADNNQLTMLPELP-------TSLEVLSVRNNQLTFLPE---LPESLEALDVST 189

Query: 105 CFNLKELPEGIGKLINMKHL---LNRGTNSLRYMPVGIGRLTGLRTL 148
              L+ LP    +  + +          N + ++P  I  L    T+
Sbjct: 190 NL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 40/253 (15%), Positives = 68/253 (26%), Gaps = 81/253 (32%)

Query: 48  TSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISY 104
                L +++    SLP  +         +  L +    ++ LPE      +LE LD   
Sbjct: 59  NQFSELQLNRLNLSSLPDNLPPQ------ITVLEITQNALISLPELPA---SLEYLDACD 109

Query: 105 CFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKA 164
              L  LPE    L +    L+   N L  +P     L  +            + D  + 
Sbjct: 110 N-RLSTLPELPASLKH----LDVDNNQLTMLPELPALLEYI------------NADNNQL 152

Query: 165 CRL-ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKN 223
             L E   +LE L                           +   +L F            
Sbjct: 153 TMLPELPTSLEVL--------------------------SVRNNQLTF------------ 174

Query: 224 EDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLG--LSLCENC-EQLPP- 279
                L E       L+ L++  N      P+      + +         EN    +P  
Sbjct: 175 -----LPELPE---SLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPEN 225

Query: 280 LGKLPSLEQLFIS 292
           +  L     + + 
Sbjct: 226 ILSLDPTCTIILE 238

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 4/104 (3%)

Query: 41  EELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNL 97
             L     SL ALDVS     SLP   +RN        +   R  +I  +PE +  L   
Sbjct: 173 TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPT 232

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGR 141
             + +     L             +   +               
Sbjct: 233 CTIILEDN-PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 45/250 (18%), Positives = 92/250 (36%), Gaps = 47/250 (18%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
                  + + ++   +  +   L  +  L      I  +   +  L NL +++ S    
Sbjct: 24  AEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-Q 79

Query: 108 LKELPEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166
           L ++   +  L  +  + +N   N +  +   +  LT L  L          +   +   
Sbjct: 80  LTDITP-LKNLTKLVDILMNN--NQIADIT-PLANLTNLTGL---------TLFNNQITD 126

Query: 167 LESLKNLEHLQVCGIR--RLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNE 224
           ++ LKNL +L    +    + D+S +     L+          +L F  +          
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQ----------QLSFGNQVTD------- 169

Query: 225 DDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPPLGKL 283
                L+ L     L+ L+I  N+ +    S +  LTNL+SL  +   N    + PLG L
Sbjct: 170 -----LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT--NNQISDITPLGIL 220

Query: 284 PSLEQLFISY 293
            +L++L ++ 
Sbjct: 221 TNLDELSLNG 230

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 49/248 (19%), Positives = 90/248 (36%), Gaps = 43/248 (17%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
            +L  ++ S   L    +  +K L  L  + +   +I  +   L  L NL  L +     
Sbjct: 68  NNLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-Q 123

Query: 108 LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167
           + ++   +  L N+  L    +N++  +   +  LT L+ L            G +   L
Sbjct: 124 ITDIDP-LKNLTNLNRL-ELSSNTISDIS-ALSGLTSLQQLS----------FGNQVTDL 170

Query: 168 ESLKNLEHLQVCGIR--RLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNED 225
           + L NL  L+   I   ++ D+S + +   LE       +  ++                
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLAKLTNLE---SLIATNNQIS--------------- 212

Query: 226 DQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPS 285
               +  L    +L EL +  N+   +    + SLTNL  L L+       L PL  L  
Sbjct: 213 ---DITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANN-QISNLAPLSGLTK 266

Query: 286 LEQLFISY 293
           L +L +  
Sbjct: 267 LTELKLGA 274

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 38/250 (15%), Positives = 77/250 (30%), Gaps = 48/250 (19%)

Query: 49  SLRALDVSQVSLPTEI--LRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCF 106
            L +  ++Q    T I  +     L       L    +     +  +L  +  L      
Sbjct: 2   PLGSATITQ---DTPINQIFTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRL- 56

Query: 107 NLKELPEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKAC 165
            +K + +G+  L N+  +  +   N L  +   +  LT L  +          ++  +  
Sbjct: 57  GIKSI-DGVEYLNNLTQINFSN--NQLTDIT-PLKNLTKLVDI---------LMNNNQIA 103

Query: 166 RLESLKNLEHLQVCGIR--RLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKN 223
            +  L NL +L    +   ++ D+  +     L          L L  +           
Sbjct: 104 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR--------LELSSNT---------- 145

Query: 224 EDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKL 283
                 +  +     L  L+             + +LT L+ L +S       +  L KL
Sbjct: 146 ------ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISVLAKL 198

Query: 284 PSLEQLFISY 293
            +LE L  + 
Sbjct: 199 TNLESLIATN 208

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 49/262 (18%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
           T+L  L +    +    +  +K L +L  L L    I  +   L  L +L++L      N
Sbjct: 112 TNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG---N 165

Query: 108 LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTL--GEFRVSAGGDVDGRKAC 165
                + +  L  ++ L +  +N +  +   + +LT L +L     ++S   D+      
Sbjct: 166 QVTDLKPLANLTTLERL-DISSNKVSDIS-VLAKLTNLESLIATNNQIS---DITP---- 216

Query: 166 RLESLKNLEHLQVCGIRRLGDVSDVGEAKRLE--------------LDKKKYLSCLRLRF 211
            L  L NL+ L + G + L D+  +     L               L     L+ L+L  
Sbjct: 217 -LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 274

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
           ++                +  L     L  LE+  N+   + P  +++L NL  L L   
Sbjct: 275 NQISN-------------ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319

Query: 272 ENCEQLPPLGKLPSLEQLFISY 293
            N   + P+  L  L++LF   
Sbjct: 320 -NISDISPVSSLTKLQRLFFYN 340

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 44/249 (17%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
           T+L  LD+S   +    +  + KL +L  L     +I  +   L  L NL++L ++    
Sbjct: 177 TTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-Q 232

Query: 108 LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167
           LK++   +  L N+  L +   N +  +   +  LT L  L          +   +   +
Sbjct: 233 LKDIG-TLASLTNLTDL-DLANNQISNLA-PLSGLTKLTEL---------KLGANQISNI 280

Query: 168 ESLKNLEHLQVCGIR--RLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNED 225
             L  L  L    +   +L D+S +   K L       L    +                
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPISNLKNLT---YLTLYFNNISD-------------- 323

Query: 226 DQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPPLGKLP 284
               +  +     L+ L    N+ +    S + +LTN+  L      N    L PL  L 
Sbjct: 324 ----ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG--HNQISDLTPLANLT 375

Query: 285 SLEQLFISY 293
            + QL ++ 
Sbjct: 376 RITQLGLND 384

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.6 bits (128), Expect = 6e-08
 Identities = 44/239 (18%), Positives = 82/239 (34%), Gaps = 62/239 (25%)

Query: 58  VSLPTEI--LRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGI 115
           +++ T I  +            NL+   +     T  EL +++++  +   ++K + +GI
Sbjct: 5   ITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSV-QGI 61

Query: 116 GKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH 175
             L N+  L     N L  +   +  L  L  L          +D  K   L SLK+L+ 
Sbjct: 62  QYLPNVTKL-FLNGNKLTDIK-PLTNLKNLGWL---------FLDENKIKDLSSLKDLKK 110

Query: 176 LQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRP 235
           L+                             L L  +   +             +  L  
Sbjct: 111 LKS----------------------------LSLEHNGISD-------------INGLVH 129

Query: 236 PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPPLGKLPSLEQLFISY 293
              L+ L +  N+   +    ++ LT L +L L   +N    + PL  L  L+ L++S 
Sbjct: 130 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLE--DNQISDIVPLAGLTKLQNLYLSK 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 16/131 (12%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
            +L  L + +  +    L ++K L  L+ L+L    I  +   L  L  LE L +     
Sbjct: 87  KNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-K 142

Query: 108 LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167
           + ++   + +L  +   L+   N +  +   +  LT L+ L          +       L
Sbjct: 143 ITDI-TVLSRLTKLDT-LSLEDNQISDIV-PLAGLTKLQNL---------YLSKNHISDL 190

Query: 168 ESLKNLEHLQV 178
            +L  L++L V
Sbjct: 191 RALAGLKNLDV 201

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 40/263 (15%), Positives = 87/263 (33%), Gaps = 35/263 (13%)

Query: 49  SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFN 107
           S R     +  + TEI  ++    +   L     K+  + +       +LEK++IS    
Sbjct: 10  SNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 108 LKELPEGI-GKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166
           L+ +   +   L  +  +     N+L Y+         L  L    +S            
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEA--FQNLPNLQYLLISN---------TG 115

Query: 167 LESL--------KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLR------FD 212
           ++ L             L +     +  +               +L+   ++      F+
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175

Query: 213 --KKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSL 270
             +  E      N  ++L  +          L+I   R +++    + +L  L++     
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY- 234

Query: 271 CENCEQLPPLGKLPSLEQLFISY 293
             N ++LP L KL +L +  ++Y
Sbjct: 235 --NLKKLPTLEKLVALMEASLTY 255

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 65/372 (17%), Positives = 122/372 (32%), Gaps = 37/372 (9%)

Query: 47  STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE-LYNLEKLDISYC 105
           S     L++SQ  +      +I  L  LR L +   +I  L  ++ +    LE LD+S+ 
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 106 FNLKELPEGIGKLINMKHLLNRGTNSLRYMPVG--IGRLTGLRTLG------------EF 151
             L ++       +N+KH L+   N+   +P+    G ++ L+ LG              
Sbjct: 80  -KLVKIS--CHPTVNLKH-LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDK----KKYLSCL 207
                  V           ++ E LQ      L  V    +     LD        L   
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS-WMTSLTNLKSL 266
            ++   +        +   +L        L L  +E  +N    +    W T++      
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 267 GLSLCENCEQLPPLGKLPSLEQLFISYMSSVK------RVGDEFLGVESDR-HDSSSSSL 319
            + L    +         SL+ L I  + S         + + F  +       S +  +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 320 VIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQ 379
            ++   K+          L+  +  +T T       +  L +L++    +LK L      
Sbjct: 316 HMLCPSKISPFL-----HLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEM 369

Query: 380 TTTLKRLWILNC 391
           TT +K L  L+ 
Sbjct: 370 TTQMKSLQQLDI 381

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 25/130 (19%)

Query: 44  FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET---LCELYNLEKL 100
             + +    LD S   L   +  N   L  L  L L+  ++ +L +      ++ +L++L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 101 DISYCFNLKELPEGI-GKLINMKHL---------------------LNRGTNSLRYMPVG 138
           DIS      +  +G      ++  L                     L+  +N ++ +P  
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQ 439

Query: 139 IGRLTGLRTL 148
           + +L  L+ L
Sbjct: 440 VVKLEALQEL 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 50/271 (18%), Positives = 79/271 (29%), Gaps = 66/271 (24%)

Query: 41  EELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELY----- 95
             L      L +L  S  SL TE+    + L  L   N     +  LP  L  L      
Sbjct: 84  SSLPELPPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ 142

Query: 96  -----------NLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTG 144
                       L+ +D+    +LK+LP+    L      +  G N L  +P  +  L  
Sbjct: 143 LEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEF----IAAGNNQLEELPE-LQNLPF 196

Query: 145 LRTLGEFRVSAGGDVDGRKACRL-ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY 203
           L  +           D     +L +   +LE +       L ++ ++     L       
Sbjct: 197 LTAI---------YADNNSLKKLPDLPLSLESIVAGN-NILEELPELQNLPFLT------ 240

Query: 204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPL-DLKELEIQFNRGNTVFPSWMTSLTN 262
              +    +                 L+ L      L+ L ++ N      P    SLT 
Sbjct: 241 --TIYADNNL----------------LKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTF 281

Query: 263 LKSLGLSLCENCEQLPPLGKLPSLEQLFISY 293
           L             L  L   P+L  L  S 
Sbjct: 282 LDVSENIF----SGLSEL--PPNLYYLNASS 306

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 49/251 (19%), Positives = 83/251 (33%), Gaps = 40/251 (15%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
             L  L VS   L    L  ++    L+ +++    + KLP+      +LE +       
Sbjct: 131 PLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNN-Q 184

Query: 108 LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167
           L+ELPE +  L  +  +     NSL+ +P     L  +                     L
Sbjct: 185 LEELPE-LQNLPFLTAIYADN-NSLKKLPDLPLSLESI------------VAGNNILEEL 230

Query: 168 ESLKNLEHLQVCGIR--RLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKN-E 224
             L+NL  L         L  + D            + L+          E  +     +
Sbjct: 231 PELQNLPFLTTIYADNNLLKTLPD-------LPPSLEALNVRDNYLTDLPELPQSLTFLD 283

Query: 225 DDQLLLEALRP-PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPPLGK 282
             + +   L   P +L  L    N   ++         +L+ L +S   N   +LP L  
Sbjct: 284 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLP----PSLEELNVS--NNKLIELPAL-- 335

Query: 283 LPSLEQLFISY 293
            P LE+L  S+
Sbjct: 336 PPRLERLIASF 346

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 41  EELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKL 100
             L     +L  L+ S   +   +         L  LN+   K+++LP        LE+L
Sbjct: 290 SGLSELPPNLYYLNASSNEI-RSL---CDLPPSLEELNVSNNKLIELPALPP---RLERL 342

Query: 101 DISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLR 146
             S+  +L E+PE    L  + H+     N LR  P     +  LR
Sbjct: 343 IASFN-HLAEVPELPQNLKQL-HVEY---NPLREFPDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 43/261 (16%), Positives = 76/261 (29%), Gaps = 63/261 (24%)

Query: 48  TSLRALDVSQ----VSLPTEILRNIKKLV---------HLRYLNLRFPKIVKLPETLCEL 94
            S      +      + P       +  V             L L    +  LPE     
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE---LP 90

Query: 95  YNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVS 154
            +LE L  S   +L ELPE    L ++    N    +L  +P        L  L      
Sbjct: 91  PHLESLVASCN-SLTELPELPQSLKSLLVDNNNL-KALSDLP------PLLEYL------ 136

Query: 155 AGGDVDGRKACRLESLKNLEHLQVCGIR--RLGDVSDVGEAKRLELDKKKYLSCLRLRFD 212
               V   +  +L  L+N   L++  +    L  + D            ++++    + +
Sbjct: 137 ---GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNNQLE 186

Query: 213 KKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCE 272
           +                L  L+    L  +    N    +         +L+S+      
Sbjct: 187 E----------------LPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNI 226

Query: 273 NCEQLPPLGKLPSLEQLFISY 293
             E+LP L  LP L  ++   
Sbjct: 227 L-EELPELQNLPFLTTIYADN 246

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 49/268 (18%), Positives = 81/268 (30%), Gaps = 43/268 (16%)

Query: 41  EELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKL 100
           ++L     SL ++      L  E L  ++ L  L  +      +  LP+      +LE L
Sbjct: 208 KKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKTLPDLPP---SLEAL 262

Query: 101 DISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLT-----------GLRTLG 149
           ++     L +LPE    L  +    N   + L  +P  +  L               +L 
Sbjct: 263 NVRDN-YLTDLPELPQSLTFLDVSENIF-SGLSELPPNLYYLNASSNEIRSLCDLPPSLE 320

Query: 150 EFRVSAGGDVDGRKACRLESL----KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS 205
           E  VS           +L  L      LE L       L +V +            K L 
Sbjct: 321 ELNVS---------NNKLIELPALPPRLERLIASFN-HLAEVPE-------LPQNLKQLH 363

Query: 206 CLRLRFDK-KKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLK 264
                  +             +  L E    P +LK+L ++ N     FP    S+ +L+
Sbjct: 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVEDLR 422

Query: 265 SLGLSLCENCEQLPPLGKLPSLEQLFIS 292
                + +  E          LE     
Sbjct: 423 MNSERVVDPYE--FAHETTDKLEDDVFE 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 54/236 (22%)

Query: 71  LVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHL------ 124
              L+        + ++P     + +  +   ++    +  P G G+   M         
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 125 ------LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL-ESLKNLEHLQ 177
                 L      L  +P     L  L                     L E  ++L+ L 
Sbjct: 70  DRQAHELELNNLGLSSLPELPPHLESL------------VASCNSLTELPELPQSLKSLL 117

Query: 178 VCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPL 237
           V     L  +SD+             L  L +  ++ ++             L  L+   
Sbjct: 118 VDNN-NLKALSDLPPL----------LEYLGVSNNQLEK-------------LPELQNSS 153

Query: 238 DLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISY 293
            LK +++  N      P    SL  + +    L    E+LP L  LP L  ++   
Sbjct: 154 FLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQL----EELPELQNLPFLTAIYADN 204

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 57/264 (21%), Positives = 90/264 (34%), Gaps = 60/264 (22%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCE 93
            + ++ F     L  L++++    ++      N   L +LR L LR  ++  +P      
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAFNN---LFNLRTLGLRSNRLKLIPLGVFTG 102

Query: 94  LYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEF 151
           L NL KLDIS    +  L + +   L N+K L +    N L Y+       +GL      
Sbjct: 103 LSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGD--NDLVYISHRA--FSGLN----- 152

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
                          LE L     L+ C +  +   +         L     L  LRLR 
Sbjct: 153 --------------SLEQL----TLEKCNLTSIPTEALSH------LHG---LIVLRLRH 185

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
                         + +   + +    LK LEI                 NL SL ++ C
Sbjct: 186 -----------LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 272 ENCEQLPP--LGKLPSLEQLFISY 293
            N   +P   +  L  L  L +SY
Sbjct: 235 -NLTAVPYLAVRHLVYLRFLNLSY 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 50/265 (18%), Positives = 95/265 (35%), Gaps = 38/265 (14%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCE 93
            +    F    +LR L +       +P  +      L +L  L++   KIV L +    +
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG---LSNLTKLDISENKIVILLDYMFQD 126

Query: 94  LYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEF 151
           LYNL+ L++    +L  +       L +++ L L +   +L  +P     L+ L  L   
Sbjct: 127 LYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEK--CNLTSIPTEA--LSHLHGLIVL 181

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
           R+    +++  +    + L  L+ L++     L  ++       L L     LS      
Sbjct: 182 RLR-HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNL---TSLSITHCNL 236

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
                               A+R  + L+ L + +N  +T+  S +  L  L+ + L   
Sbjct: 237 TAVPYL--------------AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV-- 280

Query: 272 ENC-EQLPP--LGKLPSLEQLFISY 293
                 + P     L  L  L +S 
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSG 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 59/310 (19%), Positives = 89/310 (28%), Gaps = 97/310 (31%)

Query: 36  NAEIVEELFR-ESTSLRALDVSQ---VSLPTEILRNIKKLV--------------HLRYL 77
            A +V+++    +     L+V +    +LP  +  +I  LV               LR L
Sbjct: 27  RAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTL 86

Query: 78  NLRFPKIVKLPETLCELYNLEKLDISY----------------CFNLKELPEGIGKLINM 121
            +   ++  LP     L  L                          L  LP     L   
Sbjct: 87  EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQE- 145

Query: 122 KHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESL----KNLEHLQ 177
              L+   N L  +P     L  L                    +L SL      L+ L 
Sbjct: 146 ---LSVSDNQLASLPALPSELCKLWAYN---------------NQLTSLPMLPSGLQELS 187

Query: 178 VCG--IRRLGDVSDVGEAKRLELDKKKY---------LSCLRLRFDKKKEGGERRKNEDD 226
           V    +  L       E  +L     +          L  L +             N   
Sbjct: 188 VSDNQLASLPT--LPSELYKLWAYNNRLTSLPALPSGLKELIVSG-----------NR-- 232

Query: 227 QLLLEALRPPL--DLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPP-LGK 282
              L +L P L  +LKEL +  NR  T  P   + L +     LS+  N   +LP  L  
Sbjct: 233 ---LTSL-PVLPSELKELMVSGNR-LTSLPMLPSGLLS-----LSVYRNQLTRLPESLIH 282

Query: 283 LPSLEQLFIS 292
           L S   + + 
Sbjct: 283 LSSETTVNLE 292

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 41  EELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNL 97
             L    + L+ L VS     SLP            L  L++   ++ +LPE+L  L + 
Sbjct: 234 TSLPVLPSELKELMVSGNRLTSLPMLP-------SGLLSLSVYRNQLTRLPESLIHLSSE 286

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTL 148
             +++     L E      + I      +              R T    L
Sbjct: 287 TTVNLEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 52/245 (21%)

Query: 58  VSLPTEI--LRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGI 115
           +++PT I  + +          NL+   +     T  EL +++++  +   ++K + +GI
Sbjct: 8   ITVPTPIKQIFSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSV-QGI 64

Query: 116 GKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH 175
             L N+   L    N L  +   +  L  L  L          +D  K   L SLK+L+ 
Sbjct: 65  QYLPNVTK-LFLNGNKLTDIK-PLANLKNLGWL---------FLDENKVKDLSSLKDLKK 113

Query: 176 LQVCGIR--RLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEAL 233
           L+   +    + D++         L     L  L L  +K  +             +  L
Sbjct: 114 LKSLSLEHNGISDING--------LVHLPQLESLYLGNNKITD-------------ITVL 152

Query: 234 RPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLG----LSLCENC-EQLPPLGKLPSLEQ 288
                L  L ++ N+        ++ +  L  L     L L +N    L  L  L +L+ 
Sbjct: 153 SRLTKLDTLSLEDNQ--------ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 204

Query: 289 LFISY 293
           L +  
Sbjct: 205 LELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 16/131 (12%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
            ++  L ++   L    ++ +  L +L +L L   K+  L  +L +L  L+ L + +   
Sbjct: 68  PNVTKLFLNGNKL--TDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHN-G 123

Query: 108 LKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL 167
           + ++  G+  L  ++  L  G N +  +   + RLT L TL          ++  +   +
Sbjct: 124 ISDI-NGLVHLPQLES-LYLGNNKITDIT-VLSRLTKLDTL---------SLEDNQISDI 171

Query: 168 ESLKNLEHLQV 178
             L  L  LQ 
Sbjct: 172 VPLAGLTKLQN 182

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 33  SSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC 92
            S        L  E   +R L ++   L   +L ++++L+ + +L+L   ++  LP  L 
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALA 483

Query: 93  ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMP--VGIGRLTGLRTL 148
            L  LE L  S    L+ +  G+  L  ++  L    N L+       +     L  L
Sbjct: 484 ALRCLEVLQASDN-ALENVD-GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLL 538

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 40/294 (13%), Positives = 92/294 (31%), Gaps = 57/294 (19%)

Query: 73  HLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSL 132
             +   L   +             L + ++S       L   +     ++ L       L
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELS-VEKSTVLQSELESCKELQELEPENKWCL 385

Query: 133 RYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGE 192
                    LT +  +             +    L+++  +    +  +R    + +   
Sbjct: 386 ---------LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 193 AKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV 252
                  +  +L+   L                   +L  L   L +  L++  NR    
Sbjct: 437 KMEYADVRVLHLAHKDLT------------------VLCHLEQLLLVTHLDLSHNR-LRA 477

Query: 253 FPSWMTSLTNLKSLGLSLCENC-EQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDR 311
            P  + +L  L+ L  S  +N  E +  +  LP L++L +                 ++R
Sbjct: 478 LPPALAALRCLEVLQAS--DNALENVDGVANLPRLQELLLC----------------NNR 519

Query: 312 HDSSSSSLVIIAFPKLKSLRIEG--LMELEEWDYGITRTGNTVINIMPHLSSLV 363
              S++   +++ P+L  L ++G  L + E            +  ++P +SS++
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ-------ERLAEMLPSVSSIL 566

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 10/138 (7%)

Query: 44  FRESTSLRALDVS--QVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLD 101
           F + T L  L +S   +S      ++      L+YL+L F  ++ +      L  LE LD
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107

Query: 102 ISYCFNLKELPEG--IGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGD 158
             +  NLK++ E      L N+ +L ++      R    GI    GL +L   +++    
Sbjct: 108 FQHS-NLKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGI--FNGLSSLEVLKMAGNSF 162

Query: 159 VDGRKACRLESLKNLEHL 176
            +         L+NL  L
Sbjct: 163 QENFLPDIFTELRNLTFL 180

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 14/114 (12%)

Query: 43  LFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVK--LPETLCELYNL 97
           +F    +L  LD+S          I      L  L  L +      +  LP+   EL NL
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVGI-GRLTGLRTL 148
             LD+S C  L++L        ++  L  LN   N+   +       L  L+ L
Sbjct: 178 TFLDLSQC-QLEQLSPTA--FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 44/247 (17%), Positives = 74/247 (29%), Gaps = 47/247 (19%)

Query: 59  SLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPEGIGK 117
           S+PT I  +         L L   K+  LP     +L  L KL +S    L         
Sbjct: 21  SVPTGIPSS------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS 73

Query: 118 LINMKHL--LNRGTNSLRYMPVGIGRLTGLRTL-----GEFRVSAGGDVDGRKACRLESL 170
                 L  L+   N +  M      L  L  L        ++S            L +L
Sbjct: 74  DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-----LRNL 128

Query: 171 KNLEHLQVCGIRRLGDV--SDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQL 228
             L  +     R   +   + +   + L++    +                         
Sbjct: 129 IYL-DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---------------------NF 166

Query: 229 LLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP--LGKLPSL 286
           L +      +L  L++   +   + P+   SL++L+ L +S   N   L       L SL
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSL 225

Query: 287 EQLFISY 293
           + L  S 
Sbjct: 226 QVLDYSL 232

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 65/370 (17%), Positives = 120/370 (32%), Gaps = 37/370 (10%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE-LYNLEKLDISYCF 106
              +AL +SQ S+    + +I  L  LR L L   +I  L   +     +LE LD+S+  
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-- 109

Query: 107 N-LKELPEGIGKLINMKHLLNRGTNSLRYMPVG--IGRLTGLRTLG----EFRVSAGGDV 159
           N L+ +      + +++HL +   N    +PV    G LT L  LG    +FR      V
Sbjct: 110 NRLQNIS--CCPMASLRHL-DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 160 DGRKACRLESLKNLEHLQVCGIRRLGDVSDV---------GEAKRLELDKKKYLSCLRLR 210
                  +       H++      L   +                        L  L+L 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 211 -FDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS-WMTSLTNLKSLGL 268
                 E  +R      +L        + L+ +E  +     +F   W   +  L    L
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 269 SLCENCEQLPPLGKLPSLEQLFISYMSSVK------RVGDEFLGVESDR-HDSSSSSLVI 321
           ++ E  ++        +L+ L I ++ +         +   F  +       S +  + +
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 322 IAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTT 381
           +  P   S        L       T +     + +  L +L++     LK        T 
Sbjct: 347 VCPPSPSSFT-----FLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTK 400

Query: 382 TLKRLWILNC 391
            +  L  L+ 
Sbjct: 401 NMSSLETLDV 410

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCE 93
            I    F    +L  L++      ++P         L  L+ L LR   I  +P      
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY---LSKLKELWLRNNPIESIPSYAFNR 158

Query: 94  LYNLEKLDISYCFNLKELPEGI-GKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTL 148
           + +L +LD+     L  + EG    L N+++ LN    +LR +P  +  L  L  L
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRY-LNLAMCNLREIP-NLTPLIKLDEL 212

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 52/263 (19%), Positives = 96/263 (36%), Gaps = 55/263 (20%)

Query: 47  STSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDI 102
           ST+ R L++ +     +     ++   L HL  L L    I  +       L NL  L++
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKH---LRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 103 SYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGI-GRLTGLRTL--GEF----RV 153
                L  +P G    L  +K L L    N +  +P     R+  LR L  GE      +
Sbjct: 120 FDN-RLTTIPNGAFVYLSKLKELWLRN--NPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 154 SAGGDVDGRKACRLESLKNLE--HLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
           S G           E L NL   +L +C +R + +++ + +   L+L             
Sbjct: 177 SEGA---------FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS------------ 215

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
                      N    +   + +  + L++L +  ++   +  +   +L +L  + L+  
Sbjct: 216 ----------GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 272 ENCEQLPP--LGKLPSLEQLFIS 292
            N   LP      L  LE++ + 
Sbjct: 266 -NLTLLPHDLFTPLHHLERIHLH 287

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 65/427 (15%), Positives = 126/427 (29%), Gaps = 121/427 (28%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLR----FPKIVKLPETLCE 93
           E  + L+ ++      +VS++    ++ + + +L   + + +       K   +   +C 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCL 172

Query: 94  LYNLEK--------LDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGL 145
            Y ++         L++  C + + + E    L  + + ++    S       I      
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPNWTSRSDHSSNI------ 223

Query: 146 RTLGEFRVSAGGDVDGRKACRLESLKNLEH-LQVCGIRRLGDVSDVGEAKRLELDKKKYL 204
               + R+     +      RL   K  E+ L V     L +V +              L
Sbjct: 224 ----KLRIH---SIQAELR-RLLKSKPYENCLLV-----LLNVQNAKAWNAFN------L 264

Query: 205 SCLRL---RFDKK---KEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT 258
           SC  L   R  K+                + L+     L   E++       ++   +  
Sbjct: 265 SCKILLTTR-FKQVTDFLSAATTT----HISLDHHSMTLTPDEVK-------SLLLKY-- 310

Query: 259 SLTNLKSLGLSLCENCEQLPP--LGKLPSLEQLFISYMSSVKRVG----DEFLGVESDRH 312
                  L        + LP   L   P      +S ++   R G    D +  V  D+ 
Sbjct: 311 -------LDCR----PQDLPREVLTTNP----RRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 313 DS--SSS--------------SLVIIAFPKLKSLRI-EGLMELEEWDYGITRTGNTVINI 355
            +   SS               L +  FP   S  I   L+ L  W   I      V+N 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSV--FP--PSAHIPTILLSL-IWFDVIKSDVMVVVNK 410

Query: 356 MPHLSSLVI-DSCYELKALPD-------HIHQTTTLKRLWILNCGPLGERYRTGEGEDWP 407
           + H  SLV         ++P         +     L R  +       + Y   +  D  
Sbjct: 411 L-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV-------DHYNIPKTFDSD 462

Query: 408 NISHIPN 414
           ++     
Sbjct: 463 DLIPPYL 469

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 29/218 (13%), Positives = 65/218 (29%), Gaps = 58/218 (26%)

Query: 189 DVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNR 248
           + GE    +   K  LS     F           N D + + +  +  L  +E++     
Sbjct: 10  ETGE---HQYQYKDILSVFEDAF---------VDNFDCKDVQDMPKSILSKEEIDHIIMS 57

Query: 249 GNTV------FPSWMTSLTNL--KSLGLSLCEN----CEQLPPLGKLPSLE-QLFISYMS 295
            + V      F + ++    +  K +   L  N       +    + PS+  +++I    
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 296 SVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINI 355
            +      F                     K    R++  ++L +    +    N +I+ 
Sbjct: 118 RLYNDNQVF--------------------AKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 356 MPHL--SSLVIDSCYELK---ALPDHIHQTTTLKRLWI 388
           +     + + +D C   K    +   I         W+
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIF--------WL 187

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 41  EELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNL 97
            EL   S +L  L++       +  +++        L+ L+L   K+  +         +
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDLSSNKLAFMGPEFQSAAGV 216

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHL 124
             + +     L  + + +    N++H 
Sbjct: 217 TWISLRNN-KLVLIEKALRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYC-F 106
             L+ LD+S   L   +    +    + +++LR  K+V + + L    NLE  D+    F
Sbjct: 191 AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249

Query: 107 NLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166
           +   L +   K   ++ +  +    L         +  L   G +      D+    A R
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE---DLPAPFADR 306

Query: 167 LESLKNLEH 175
           L +L +  H
Sbjct: 307 LIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 42  ELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKL 100
           E+ +     +   V+  SL   +    +   +++ L+L    + ++    L     LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 101 DISYCFNLKELPEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTL 148
           ++S    L E  + +  L  ++ L LN   N ++     +     + TL
Sbjct: 64  NLSSN-VLYETLD-LESLSTLRTLDLNN--NYVQE----LLVGPSIETL 104

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNL 97
           + +  L + + +++ LD+S   L      ++     L  LNL    + +  + L  L  L
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTL 82

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTL 148
             LD++    ++EL        +++ L      N++  +        G + +
Sbjct: 83  RTLDLNNN-YVQELLV----GPSIETLHAAN--NNISRVSCSR--GQGKKNI 125

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 48  TSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP--ETLCELYNLEKLDI 102
              + + ++      L             ++YL+L+  +I  +   E       LE L++
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGC---RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 103 SYCFNLKELPEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTL 148
            Y   + ++   +     +K L L+   N L +M        G+  +
Sbjct: 177 QYN-FIYDVKGQVV-FAKLKTLDLSS--NKLAFMGPEFQSAAGVTWI 219

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 34/266 (12%), Positives = 78/266 (29%), Gaps = 32/266 (12%)

Query: 41  EELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNL 97
            EL   S +L  L++       +  +++        L+ L+L   K+  +         +
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDLSSNKLAFMGPEFQSAAGV 216

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRY--MPVGIGRLTGLRTLGEFRVSA 155
             + +     L  + + +    N++H   RG N      +     +   ++T+ +  V  
Sbjct: 217 TWISLRNN-KLVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAKQTVK- 273

Query: 156 GGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKK 215
              + G+            +   C      +      A RL   K+K  + L  +  + +
Sbjct: 274 --KLTGQNEEECTVPTLGHYGAYC-----CEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 216 EGGERRKNEDDQLLL------------EALRPPLDLKELEIQFNRGNTVFPSWMTSLTNL 263
                R+N+  Q  +            +          LE +    +    +   +   L
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

Query: 264 KSLGLSLCENCEQLPPLGKLPSLEQL 289
                      E      +   L+ L
Sbjct: 387 DGTLQQAVGQIELQHATEEQSPLQLL 412

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 42  ELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKL 100
           E+ +     +   V+  SL   +    +   +++ L+L    + ++    L     LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 101 DISYCFNLKELPEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTL 148
           ++S    L E  + +  L  ++ L LN   N ++     +     + TL
Sbjct: 64  NLSSN-VLYETLD-LESLSTLRTLDLNN--NYVQ----ELLVGPSIETL 104

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 48  TSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP--ETLCELYNLEKLDI 102
              + + ++      L             ++YL+L+  +I  +   E       LE L++
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGC---RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 103 SYCFNLKELPEGIGKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTL 148
            Y   + ++   +     +K L L+   N L +M        G+  +
Sbjct: 177 QYN-FIYDVKGQVV-FAKLKTLDLSS--NKLAFMGPEFQSAAGVTWI 219

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 45/254 (17%), Positives = 82/254 (32%), Gaps = 49/254 (19%)

Query: 48  TSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDIS 103
            + + +         LP  +L +      +  LNL   +I ++        + ++KL + 
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDS---FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

Query: 104 YCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVS--AGGDV 159
           +   ++ LP  +   +  +  L L R  N L  +P GI        L    +S      +
Sbjct: 102 FN-AIRYLPPHVFQNVPLLTVLVLER--NDLSSLPRGI--FHNTPKLTTLSMSNNNLERI 156

Query: 160 DGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGE 219
           +        SL+NL  L    +              ++L     L    + ++       
Sbjct: 157 EDDTFQATTSLQNL-QLSSNRL------------THVDLSLIPSLFHANVSYNL------ 197

Query: 220 RRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP 279
                     L  L  P+ ++EL+   N  N V          L  L L    N      
Sbjct: 198 ----------LSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHN-NLTDTAW 243

Query: 280 LGKLPSLEQLFISY 293
           L   P L ++ +SY
Sbjct: 244 LLNYPGLVEVDLSY 257

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCE 93
           ++   L      +  L+++      + T           ++ L + F  I  LP      
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY---AHTIQKLYMGFNAIRYLPPHVFQN 115

Query: 94  LYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGIGR-LTGLRTL 148
           +  L  L +    +L  LP GI      +  L ++   N+L  +     +  T L+ L
Sbjct: 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSN--NNLERIEDDTFQATTSLQNL 170

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 43/266 (16%), Positives = 86/266 (32%), Gaps = 54/266 (20%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCE 93
           EI    F  + +++ L +       LP  + +N   +  L  L L    +  LP      
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN---VPLLTVLVLERNDLSSLPRGIFHN 139

Query: 94  LYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEF 151
              L  L +S   NL+ + +       ++++L L+   N L ++   +  +  L      
Sbjct: 140 TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS--NRLTHVD--LSLIPSLFHA--- 191

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQV--CGIRRLGDVSDVGEAKRLELDKKKYLSCLRL 209
                 +V       L     +E L      I  +                   L+ L+L
Sbjct: 192 ------NVSYNLLSTLAIPIAVEELDASHNSINVVRG------------PVNVELTILKL 233

Query: 210 RFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLS 269
           + +   +                L     L E+++ +N    +       +  L+ L +S
Sbjct: 234 QHNNLTD-------------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 270 LCENC-EQLPP-LGKLPSLEQLFISY 293
              N    L      +P+L+ L +S+
Sbjct: 281 --NNRLVALNLYGQPIPTLKVLDLSH 304

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNL 97
           +I+   F +   L  L +S   L   +    + +  L+ L+L    ++ +     +   L
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 320

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHL 124
           E L + +  ++  L         +K+L
Sbjct: 321 ENLYLDHN-SIVTLKLST--HHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 22/125 (17%)

Query: 44  FRESTSLRALDVSQ---VSLPTEILRNIKKL----------------VHLRYLNLRFPKI 84
                ++  LD S      +   +   +  L                  L  ++L + ++
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 260

Query: 85  VKLPE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLT 143
            K+      ++  LE+L IS    L  L      +  +K L +   N L ++     +  
Sbjct: 261 EKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVL-DLSHNHLLHVERNQPQFD 318

Query: 144 GLRTL 148
            L  L
Sbjct: 319 RLENL 323

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 33/237 (13%), Positives = 79/237 (33%), Gaps = 48/237 (20%)

Query: 63  EILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMK 122
            ++     L +   +      +     T  +L  +  L       +  + EG+  L N+ 
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGT-GVTTI-EGVQYLNNLI 66

Query: 123 HLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQV---- 178
             L    N +  +   +  LT +  L         ++ G     + ++  L+ ++     
Sbjct: 67  G-LELKDNQITDLA-PLKNLTKITEL---------ELSGNPLKNVSAIAGLQSIKTLDLT 115

Query: 179 -CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPL 237
              I  +  ++ +   + L LD  +  +                        +  L    
Sbjct: 116 STQITDVTPLAGLSNLQVLYLDLNQITN------------------------ISPLAGLT 151

Query: 238 DLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPPLGKLPSLEQLFISY 293
           +L+ L I   + + + P  + +L+ L +L     +N    + PL  LP+L ++ +  
Sbjct: 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKAD--DNKISDISPLASLPNLIEVHLKN 204

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 22/154 (14%)

Query: 48  TSLRALDVSQVSLPTEI--LRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYC 105
            +L  L++       +I  L  +K L  +  L L    +  +   +  L +++ LD++  
Sbjct: 63  NNLIGLELKD----NQITDLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTST 117

Query: 106 FNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKAC 165
             + ++   +  L N++  L    N +  +   +  LT L+ L          +   +  
Sbjct: 118 -QITDV-TPLAGLSNLQV-LYLDLNQITNIS-PLAGLTNLQYL---------SIGNAQVS 164

Query: 166 RLESLKNLEHLQVCGIR--RLGDVSDVGEAKRLE 197
            L  L NL  L        ++ D+S +     L 
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISPLASLPNLI 198

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 70  KLVHLRYLNLRFPKIVKLPETLC-ELYNLEKLDISYCFN-LKELPEGI-GKLINMKHLLN 126
            L++L+ L L   ++  LP  +   L  L  LD+    N L  LP  +  +L+++K L  
Sbjct: 62  SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT--NQLTVLPSAVFDRLVHLKEL-F 118

Query: 127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQ 177
              N L  +P GI RLT L  L   +        G      + L +L H  
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG----AFDRLSSLTHAY 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 44  FRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE-LYNLEK 99
           F    +L+ L +      +LP  +      L  L  L+L   ++  LP  + + L +L++
Sbjct: 60  FDSLINLKELYLGSNQLGALPVGVF---DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116

Query: 100 LDISYCFN-LKELPEGIGKLINMKHLLNRGTNSLRYMPVGI-GRLTGLRTL 148
           L +    N L ELP GI +L ++ H L    N L+ +P G   RL+ L   
Sbjct: 117 LFMCC--NKLTELPRGIERLTHLTH-LALDQNQLKSIPHGAFDRLSSLTHA 164

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 48/295 (16%), Positives = 95/295 (32%), Gaps = 43/295 (14%)

Query: 37  AEIVEELFRESTSLRALDVSQVSLPTEILRNI-KKLVHLRYLNLRFPKIVKLPE-TLCEL 94
           AE+ E  F     L+ L V Q +    I  N  + L  L  L L + + ++L       L
Sbjct: 43  AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102

Query: 95  YNLEKLDISYC-FNLKELPEGI-GKLINMKHL-LNRGTNSLRYM-PVGI-GRLTGLRTLG 149
            NLE L ++ C  +   L       L +++ L L    N+++ + P      +     L 
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR--DNNIKKIQPASFFLNMRRFHVLD 160

Query: 150 ----EFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEA-------KRLEL 198
               + +     D+   +      L  L  + +  +       +             L+L
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219

Query: 199 DKKKYLSCLRLRFDKKKEGGE-------RRKNEDDQLLLEALR----------PPLDLKE 241
               +   +  RF     G +          N          +              +K 
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

Query: 242 LEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLPP--LGKLPSLEQLFISY 293
            ++  ++   +  S  +  T+L+ L L+  +N   ++       L  L +L +S 
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLA--QNEINKIDDNAFWGLTHLLKLNLSQ 332

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 11/118 (9%)

Query: 37  AEIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE 93
             +++ +F   T L  L ++Q     +          L HL  LNL    +  +   + E
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG---LTHLLKLNLSQNFLGSIDSRMFE 344

Query: 94  -LYNLEKLDISYCFNLKELPEGI-GKLINMKHLLNRGTNSLRYMPVGI-GRLTGLRTL 148
            L  LE LD+SY  +++ L +     L N+K  L   TN L+ +P GI  RLT L+ +
Sbjct: 345 NLDKLEVLDLSYN-HIRALGDQSFLGLPNLKE-LALDTNQLKSVPDGIFDRLTSLQKI 400

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 30/176 (17%)

Query: 120 NMKHLLNRGTNSLRYMPVGIGRLTGLRTL--GEFRVSAGGDVDGRKACRLESLKNLEHLQ 177
             K  LN          +   ++  L  +      V+   D+ G     +E   N++ L 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTG-----IEYAHNIKDLT 72

Query: 178 VCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPL 237
           +  I    + + +     L     + L                   +     +  L    
Sbjct: 73  INNIH-ATNYNPISGLSNL-----ERLRI--------------MGKDVTSDKIPNLSGLT 112

Query: 238 DLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISY 293
            L  L+I  +  +    + + +L  + S+ LS       + PL  LP L+ L I +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 13/131 (9%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPETLCELYNLEKLDISYCF 106
            +++ L ++ +         I  L +L  L +    +       L  L +L  LDIS+  
Sbjct: 66  HNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 107 NLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR 166
           +   +   I  L  +  +      ++  +   +  L  L++L         ++       
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL---------NIQFDGVHD 173

Query: 167 LESLKNLEHLQ 177
              +++   L 
Sbjct: 174 YRGIEDFPKLN 184

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFN 107
           TSL  LD+S  +    IL  I  L  +  ++L +   +     L  L  L+ L+I +   
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-G 170

Query: 108 LKELPEGIGKLINMKHL 124
           + +   GI     +  L
Sbjct: 171 VHDY-RGIEDFPKLNQL 186

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 12/117 (10%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCE 93
           +I    F    SL  L++       +P+        L  LR L LR   I  +P      
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY---LSKLRELWLRNNPIESIPSYAFNR 169

Query: 94  LYNLEKLDISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVGIGRLTGLRTL 148
           + +L +LD+     L+ + EG      + +L  LN G  +++ MP  +  L GL  L
Sbjct: 170 VPSLMRLDLGELKKLEYISEGA--FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEEL 223

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYN 96
            I E  F    +L+ L++   ++    + N+  LV L  L +      ++   +   L +
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 97  LEKLDISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVGI-GRLTGLRTL 148
           L+KL +     +  +         +  L  LN   N+L  +P  +   L  L  L
Sbjct: 244 LKKLWVMNS-QVSLIERNA--FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 54/338 (15%), Positives = 109/338 (32%), Gaps = 82/338 (24%)

Query: 59  SLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPEGI-G 116
           S+P+ +         ++ L+L   +I  +    L    NL+ L ++    +  + E    
Sbjct: 45  SIPSGLTEA------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFS 97

Query: 117 KLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH 175
            L +++HL L+   N L  +                                + L +L  
Sbjct: 98  SLGSLEHLDLSY--NYLSNLSSSW---------------------------FKPLSSLTF 128

Query: 176 LQVCG--IRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEAL 233
           L + G   + LG+ S      +L     +  +                      +  +  
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKL--QILRVGNMDTFTK----------------IQRKDF 170

Query: 234 RPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP--LGKLPSLEQLFI 291
                L+ELEI  +   +  P  + S+ N+  L L +      L    +    S+E L +
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLEL 229

Query: 292 SYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNT 351
                               H S  S+    +  K  + R   + +              
Sbjct: 230 RDTDL------------DTFHFSELSTGETNSLIKKFTFRNVKITDES------LFQVMK 271

Query: 352 VINIMPHLSSLVIDSCYELKALPDHI-HQTTTLKRLWI 388
           ++N +  L  L      +LK++PD I  + T+L+++W+
Sbjct: 272 LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 44/264 (16%), Positives = 93/264 (35%), Gaps = 47/264 (17%)

Query: 47  STSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDI 102
           + ++++LD+S      +    L+     V+L+ L L    I  + E +   L +LE LD+
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQR---CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 103 SYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMP-----VGIGRLTGLRTLGEFRVSA 155
           SY   L  L       L ++  L L    N  + +        + +L  LR       + 
Sbjct: 108 SYN-YLSNLSSSWFKPLSSLTFLNLLG--NPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 156 --GGDVDGRKACRLESLKNLEHLQVCGIRRL--GDVSDVGEAKRLELDKKKYLSCLRLRF 211
               D  G     L  L+ L  +    ++      +  +     L L  K+++  L +  
Sbjct: 165 IQRKDFAG-----LTFLEEL-EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSL-GLSL 270
           D                   ++   L+L++ ++     + +      SL    +   + +
Sbjct: 219 DV----------------TSSVE-CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 271 CEN--CEQLPPLGKLPSLEQLFIS 292
            +    + +  L ++  L +L  S
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFS 285

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 48  TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPETLCELYNLEKLDISYCF 106
           + L +L +S   L   I  ++  L  LR L L    +  ++P+ L  +  LE L + +  
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN- 476

Query: 107 NLK-ELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTL 148
           +L  E+P G+    N+   ++   N L   +P  IGRL  L  L
Sbjct: 477 DLTGEIPSGLSNCTNLNW-ISLSNNRLTGEIPKWIGRLENLAIL 519

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 11/122 (9%)

Query: 34  SLNAEIVEELFRESTSLRALDVSQVSL----PTEILRNIKKLVHLRYLNLRFPKIV-KLP 88
             + E+ E L   S SL  LD+S  +        + +N      L+ L L+      K+P
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKNTLQELYLQNNGFTGKIP 411

Query: 89  ETLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLR 146
            TL     L  L +S+   L   +P  +G L  ++  L    N L   +P  +  +  L 
Sbjct: 412 PTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRD-LKLWLNMLEGEIPQELMYVKTLE 469

Query: 147 TL 148
           TL
Sbjct: 470 TL 471

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 11/121 (9%)

Query: 34  SLNAEIVEELFRESTSLRALDVSQVSLPTEI---LRNIKKLVHLRYLNLRFPKIV-KLPE 89
           +L+         +  SL  LD+S  S+                L++L +   KI   +  
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 90  TLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRT 147
            +    NLE LD+S   N    +P  +G    ++H L+   N L       I   T L+ 
Sbjct: 196 -VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQH-LDISGNKLSGDFSRAISTCTELKL 251

Query: 148 L 148
           L
Sbjct: 252 L 252

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 44  FRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEK 99
           F    +LR LD+S     +L   +  +   L  L  L L    IV +      ++  L+K
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDEFLFSD---LQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140

Query: 100 LDISYCFNLKELPEGI-GKLINMKHL--LNRGTNSLRYMPVG-IGRLTGLRTLG 149
           L +S    +   P  +      +  L  L+  +N L+ +P+  + +L      G
Sbjct: 141 LYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 69  KKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPEGI-GKLINMKHL-L 125
            +L +L  L L    +  +       + NL  LD+S   +L  L E +   L  ++ L L
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLL 119

Query: 126 NRGTNSLRYMPVGI-GRLTGLRTL 148
               N +  +       +  L+ L
Sbjct: 120 YN--NHIVVVDRNAFEDMAQLQKL 141

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCE 93
           ++   L      +  L+++      + T           ++ L + F  I  LP      
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY---AHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 94  LYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGIGR-LTGLRTL 148
           +  L  L +    +L  LP GI      +  L ++   N+L  +     +  T L+ L
Sbjct: 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSN--NNLERIEDDTFQATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 45/255 (17%), Positives = 82/255 (32%), Gaps = 51/255 (20%)

Query: 48  TSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDIS 103
            + + +         LP  +L +      +  LNL   +I ++        + ++KL + 
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDS---FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

Query: 104 YCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEFRVS--AGGDV 159
           +   ++ LP  +   +  +  L L R  N L  +P GI        L    +S      +
Sbjct: 108 FN-AIRYLPPHVFQNVPLLTVLVLER--NDLSSLPRGI--FHNTPKLTTLSMSNNNLERI 162

Query: 160 DGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGE 219
           +        SL+NL  L    +  +            +L     L    + ++       
Sbjct: 163 EDDTFQATTSLQNL-QLSSNRLTHV------------DLSLIPSLFHANVSYNL------ 203

Query: 220 RRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC-EQLP 278
                     L  L  P+ ++EL+   N  N V          L  L L    N      
Sbjct: 204 ----------LSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQ--HNNLTDTA 248

Query: 279 PLGKLPSLEQLFISY 293
            L   P L ++ +SY
Sbjct: 249 WLLNYPGLVEVDLSY 263

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 42/263 (15%), Positives = 84/263 (31%), Gaps = 49/263 (18%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCE 93
            +   +F+    L  L + +    SLP  I  N      L  L++    + ++  +T   
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN---TPKLTTLSMSNNNLERIEDDTFQA 169

Query: 94  LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRV 153
             +L+ L +S    L  +   +  + ++ H  N   N L  + +       +  L     
Sbjct: 170 TTSLQNLQLSSN-RLTHVDLSL--IPSLFH-ANVSYNLLSTLAI----PIAVEEL----- 216

Query: 154 SAGGDVDGRKACRLES--LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF 211
               D        +       L  L++     L D + +     L          + L +
Sbjct: 217 ----DASHNSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVE--------VDLSY 263

Query: 212 DKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLC 271
                      NE ++++         L+ L I  NR       +   +  LK L LS  
Sbjct: 264 -----------NELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHN 311

Query: 272 ENCEQLPP-LGKLPSLEQLFISY 293
            +   +     +   LE L++ +
Sbjct: 312 -HLLHVERNQPQFDRLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 43/266 (16%), Positives = 86/266 (32%), Gaps = 54/266 (20%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCE 93
           EI    F  + +++ L +       LP  + +N   +  L  L L    +  LP      
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN---VPLLTVLVLERNDLSSLPRGIFHN 145

Query: 94  LYNLEKLDISYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGIGRLTGLRTLGEF 151
              L  L +S   NL+ + +       ++++L L+   N L ++   +  +  L      
Sbjct: 146 TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS--NRLTHVD--LSLIPSLFHA--- 197

Query: 152 RVSAGGDVDGRKACRLESLKNLEHLQV--CGIRRLGDVSDVGEAKRLELDKKKYLSCLRL 209
                 +V       L     +E L      I  +                   L+ L+L
Sbjct: 198 ------NVSYNLLSTLAIPIAVEELDASHNSINVVRG------------PVNVELTILKL 239

Query: 210 RFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLS 269
           + +   +                L     L E+++ +N    +       +  L+ L +S
Sbjct: 240 QHNNLTD-------------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286

Query: 270 LCENC-EQLPP-LGKLPSLEQLFISY 293
              N    L      +P+L+ L +S+
Sbjct: 287 --NNRLVALNLYGQPIPTLKVLDLSH 310

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 36/335 (10%), Positives = 89/335 (26%), Gaps = 43/335 (12%)

Query: 73  HLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSL 132
              ++ +                NL  L +                +  ++     T  +
Sbjct: 51  TREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFN------LIPENWGGYVTPWV 104

Query: 133 RYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGE 192
             +   + +L  +            D   +         +LE L++           +  
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA-----DDLETLKLDKCSGFTTDGLLSI 159

Query: 193 AKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV 252
                    + +  L +              +D + L E  +    L+ L         +
Sbjct: 160 VTHC-----RKIKTLLME-------ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI 207

Query: 253 ----FPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVE 308
                 +   +  +L S+ +   E  E +       +LE+     ++    + ++++ + 
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267

Query: 309 SDRH-------DSSSSSLVIIAF--PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHL 359
             R            + + I+     +++ L +   +         T    T+I   P+L
Sbjct: 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-------LETEDHCTLIQKCPNL 320

Query: 360 SSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPL 394
             L   +    + L         LKRL I      
Sbjct: 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADE 355

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 43  LFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDI 102
                T L  L++ +  L    L+    L  L  L+L   ++  LP     L  L  LD+
Sbjct: 50  TLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 103 SYCFNLKELPEGI-GKLINMKHL-LNRGTNSLRYMPVGI-GRLTGLRTL 148
           S+   L  LP G    L  ++ L L    N L+ +P G+      L  L
Sbjct: 108 SFN-RLTSLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKL 153

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 13/118 (11%)

Query: 38  EIVEELFRESTSLRALDVSQ---VSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCE 93
           E+   LFR   +L+ L +      +LP +  R+   L +L +L L   +I  +PE     
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD---LGNLTHLFLHGNRISSVPERAFRG 175

Query: 94  LYNLEKLDISYCFNLKELPEGIGKLINMKHL--LNRGTNSLRYMPVGI-GRLTGLRTL 148
           L++L++L +     +  +        ++  L  L    N+L  +P      L  L+ L
Sbjct: 176 LHSLDRLLLHQN-RVAHVHPHA--FRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 62  TEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINM 121
            ++   +  L   ++L L    I K+  +L  + NL  L +     +K++ E +  + + 
Sbjct: 38  EKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRN-LIKKI-ENLDAVADT 94

Query: 122 KHLLNRGTNSLRYMPVGIGRLTGLRTL--GEFRVSAGGDVDGRKACRLESLKNLEHLQVC 179
              L    N +  +  GI +L  LR L     +++  G++D     +L +L  LE L + 
Sbjct: 95  LEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEID-----KLAALDKLEDLLLA 148

Query: 180 G 180
           G
Sbjct: 149 G 149

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 29/135 (21%)

Query: 69  KKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPEGI-GKLINMKHL-L 125
                LR ++L   +I +L       L +L  L +     + ELP+ +   L +++ L L
Sbjct: 53  SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLL 111

Query: 126 NRGTNSLRYMPVGI-GRLTGLRTLGEF-----RVSAGGDVDGRKACRLESLKNLEHLQV- 178
           N   N +  + V     L  L  L  +      ++ G             L+ ++ + + 
Sbjct: 112 N--ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT---------FSPLRAIQTMHLA 160

Query: 179 -------CGIRRLGD 186
                  C ++ L D
Sbjct: 161 QNPFICDCHLKWLAD 175

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 69  KKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFN-LKELPEGI-GKLINMKHL- 124
           KKL  LR +N    KI  + E        + ++ ++   N L+ +   +   L ++K L 
Sbjct: 54  KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS--NRLENVQHKMFKGLESLKTLM 111

Query: 125 LNRGTNSLRYMPVGI-GRLTGLRTL 148
           L   +N +  +       L+ +R L
Sbjct: 112 LR--SNRITCVGNDSFIGLSSVRLL 134

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 59/349 (16%), Positives = 106/349 (30%), Gaps = 65/349 (18%)

Query: 44  FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDIS 103
             +  +L +LD    S+    +  I+KL  L  L      I  L   L +  NL  L   
Sbjct: 38  EEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACD 93

Query: 104 YCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRK 163
               L  L   +  L  + + LN  TN L  +   + +   L  L               
Sbjct: 94  SN-KLTNLD--VTPLTKLTY-LNCDTNKLTKLD--VSQNPLLTYLN-------------- 133

Query: 164 ACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKN 223
            C   +L  ++      +  L D     +  +L++  +  L+ L   F           N
Sbjct: 134 -CARNTLTEIDVSHNTQLTEL-DCHLNKKITKLDVTPQTQLTTLDCSF-----------N 180

Query: 224 EDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLP--PLG 281
           +  +L +   +    L  L    N   T     +     L  L  S   N  +L    + 
Sbjct: 181 KITELDVSQNK---LLNRLNCDTNN-ITKLD--LNQNIQLTFLDCS--SN--KLTEIDVT 230

Query: 282 KLPSLEQLFISY--MSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELE 339
            L  L     S   ++ +       L        +    + +    +L   + EG  +++
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTLSKL-TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK 289

Query: 340 EWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWI 388
           E D          +     L  L   +   +  L   + Q   L  L++
Sbjct: 290 ELD----------VTHNTQLYLLDCQAA-GITELD--LSQNPKLVYLYL 325

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 69  KKLVHLRYLNLRFPKIVKLPETLCE-LYNLEKLDISYCFN-LKELPEGI-GKLINMKHL- 124
            +L HL  L L+  ++  +     E   ++++L +    N +KE+   +   L  +K L 
Sbjct: 51  GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE--NKIKEISNKMFLGLHQLKTLN 108

Query: 125 LNRGTNSLRYMPVGI-GRLTGLRTL 148
           L    N +  +  G    L  L +L
Sbjct: 109 LY--DNQISCVMPGSFEHLNSLTSL 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	418
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.67
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.53
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.53
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.52
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.49
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.4
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.38
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.38
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.36
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.35
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.29
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.21
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.21
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.17
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.14
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.02
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.96
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.96
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.94
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.93
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.93
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.92
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.88
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.61
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.57
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.54
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.44
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.0
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.53
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	90.36

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.7e-31  Score=274.08  Aligned_cols=372  Identities=19%  Similarity=0.159  Sum_probs=252.4

Q ss_pred             CCCccccc-cceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHh-hccccccceeeeCCCCCc-
Q 014826            9 SLPVSTRR-VKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRN-IKKLVHLRYLNLRFPKIV-   85 (418)
Q Consensus         9 ~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~-   85 (418)
                      .+|..+.+ +++|++|++++|.     +++ ..+..+..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+. 
T Consensus       284 ~ip~~~~~~~~~L~~L~Ls~n~-----l~~-~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~  357 (768)
T 3rgz_A          284 EIPDFLSGACDTLTGLDLSGNH-----FYG-AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG  357 (768)
T ss_dssp             SCCCCSCTTCTTCSEEECCSSE-----EEE-CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred             ccCHHHHhhcCcCCEEECcCCc-----CCC-ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence            57777766 4999999999997     553 35666889999999999999876666654 888999999999999976 


Q ss_pred             cCchhhhcCC-CCcEEeccCccCcccCChhhhc--cccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCc
Q 014826           86 KLPETLCELY-NLEKLDISYCFNLKELPEGIGK--LINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGR  162 (418)
Q Consensus        86 ~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  162 (418)
                      .+|..+..++ +|++|++++|.+.+.+|..+..  +++|++|++++|.+.+.+|..+.++++|+.|++.+|....     
T Consensus       358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-----  432 (768)
T 3rgz_A          358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-----  432 (768)
T ss_dssp             CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES-----
T ss_pred             cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC-----
Confidence            7888888887 8999999999877777777766  7889999999997777888889899999999988876541     


Q ss_pred             cccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEE
Q 014826          163 KACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKEL  242 (418)
Q Consensus       163 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  242 (418)
                        .....+..+++|+.+++........    ....+..+++|+.|++++|...           ...+..+..+++|++|
T Consensus       433 --~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~-----------~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          433 --TIPSSLGSLSKLRDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLT-----------GEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             --CCCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCC-----------SCCCGGGGGCTTCCEE
T ss_pred             --cccHHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCceEEEecCCccc-----------CcCCHHHhcCCCCCEE
Confidence              2233445555666655544332111    1124556788999999888743           2345567778889999


Q ss_pred             EEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCc----------
Q 014826          243 EIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDR----------  311 (418)
Q Consensus       243 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~----------  311 (418)
                      ++++|.+.+.+|.+++.+++|+.|++++|.+.+.+|. +..+++|+.|++++|.....+|...+......          
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            9999888888888888889999999999988877775 77888888888888874445554332210000          


Q ss_pred             -------------------------------------------------------------------cCCCCCccccccC
Q 014826          312 -------------------------------------------------------------------HDSSSSSLVIIAF  324 (418)
Q Consensus       312 -------------------------------------------------------------------~~~~~~~~~~~~~  324 (418)
                                                                                         ......+..+..+
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  655 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM  655 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence                                                                               0000111123344


Q ss_pred             CcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchh---------
Q 014826          325 PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLG---------  395 (418)
Q Consensus       325 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~---------  395 (418)
                      ++|+.|+++++.--..++..        +..+++|+.|++++|.....+|..+..+++|++|++++|+..+         
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~--------l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~  727 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDE--------VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE  727 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGG--------GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred             ccCCEEeCcCCccCCCCChH--------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence            45555555543211233322        3478899999999984334788888889999999999884321         


Q ss_pred             ------------------cccCCCCCCCCCcccccCcee
Q 014826          396 ------------------ERYRTGEGEDWPNISHIPNIH  416 (418)
Q Consensus       396 ------------------~~~~~~~~~~~~~i~~~~~~~  416 (418)
                                        ..|....+++|++|.|+|++.
T Consensus       728 ~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          728 TFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             GSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred             cCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence                              136778899999999999764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1.8e-29  Score=259.06  Aligned_cols=345  Identities=19%  Similarity=0.121  Sum_probs=259.5

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhcc-CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc-cCchh-hh
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRE-STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPET-LC   92 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-~~   92 (418)
                      .+++|++|++++|.     +++ .+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+. .+|.. +.
T Consensus       267 ~l~~L~~L~L~~n~-----l~~-~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~  340 (768)
T 3rgz_A          267 PLKSLQYLSLAENK-----FTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL  340 (768)
T ss_dssp             CCTTCCEEECCSSE-----EEE-SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred             ccCCCCEEECcCCc-----cCC-ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence            88999999999998     553 13443444 599999999999977788888999999999999999987 88865 89


Q ss_pred             cCCCCcEEeccCccCcccCChhhhccc-cccEEeccCCcccccCCccccc--ccccceecceeecCCCCCCCcccccccc
Q 014826           93 ELYNLEKLDISYCFNLKELPEGIGKLI-NMKHLLNRGTNSLRYMPVGIGR--LTGLRTLGEFRVSAGGDVDGRKACRLES  169 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~  169 (418)
                      .+++|++|++++|.+.+.+|..++.++ +|++|++++|.+.+.+|..+..  +++|+.|++.+|...       ......
T Consensus       341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~  413 (768)
T 3rgz_A          341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-------GKIPPT  413 (768)
T ss_dssp             TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE-------EECCGG
T ss_pred             cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc-------cccCHH
Confidence            999999999999997778999999987 9999999999888888888776  889999999888654       223344


Q ss_pred             ccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecC
Q 014826          170 LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRG  249 (418)
Q Consensus       170 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  249 (418)
                      +.++++|+.+++.......    .....+..+++|+.|++++|...           ...+..+..+++|++|++++|.+
T Consensus       414 l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~-----------~~~p~~~~~l~~L~~L~L~~N~l  478 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLE-----------GEIPQELMYVKTLETLILDFNDL  478 (768)
T ss_dssp             GGGCTTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCC-----------SCCCGGGGGCTTCCEEECCSSCC
T ss_pred             HhcCCCCCEEECcCCcccC----cccHHHhcCCCCCEEECCCCccc-----------CcCCHHHcCCCCceEEEecCCcc
Confidence            5566666666665432111    11224567799999999999753           33456677889999999999999


Q ss_pred             CCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCC-CCCcc--------
Q 014826          250 NTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-SSSSL--------  319 (418)
Q Consensus       250 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------  319 (418)
                      .+..|.++..+++|+.|++++|.+.+.+|. ++.+++|+.|++++|...+.++.........+... +...+        
T Consensus       479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            889999999999999999999999988876 88999999999999985556665443322221110 00000        


Q ss_pred             --------------------------------------------------------------------ccccCCcccccc
Q 014826          320 --------------------------------------------------------------------VIIAFPKLKSLR  331 (418)
Q Consensus       320 --------------------------------------------------------------------~~~~~~~L~~L~  331 (418)
                                                                                          ....+++|+.|+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld  638 (768)
T 3rgz_A          559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD  638 (768)
T ss_dssp             GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred             hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence                                                                                011234556666


Q ss_pred             cccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchhc
Q 014826          332 IEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGE  396 (418)
Q Consensus       332 l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~  396 (418)
                      ++++.--..++..        +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.
T Consensus       639 Ls~N~l~g~ip~~--------l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~  695 (768)
T 3rgz_A          639 MSYNMLSGYIPKE--------IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR  695 (768)
T ss_dssp             CCSSCCBSCCCGG--------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred             CcCCcccccCCHH--------HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence            6653222233333        34788999999999854447888888899999999999985543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2.2e-28  Score=245.49  Aligned_cols=323  Identities=15%  Similarity=0.183  Sum_probs=249.0

Q ss_pred             CCcccc--ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC-CcH-HHHHhhccc------cccceeee
Q 014826           10 LPVSTR--RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS-LPT-EILRNIKKL------VHLRYLNL   79 (418)
Q Consensus        10 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l   79 (418)
                      +|..+.  ++++|++|++++|.     +.. .+|..+.++++|++|++++|. +.+ .+|..+.++      ++|++|++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~-----l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L  312 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCP-----NLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI  312 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCT-----TCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC
T ss_pred             CchhhhhcccCCCCEEEecCCc-----CCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEEC
Confidence            899988  99999999999998     332 256679999999999999998 888 899888776      99999999


Q ss_pred             CCCCCccCch--hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccc-cceecceeecCC
Q 014826           80 RFPKIVKLPE--TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTG-LRTLGEFRVSAG  156 (418)
Q Consensus        80 ~~~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~  156 (418)
                      ++|.++.+|.  .+..+++|++|++++|.+.+.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++.++...
T Consensus       313 ~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             CSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred             CCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence            9999999998  89999999999999999766999 8999999999999999655 88999999999 999999888765


Q ss_pred             CCCCCccccccccccC--CcccccccccccCCCcchhhhhhhhcC-------CcccccceEeecccccCCCCCccccchh
Q 014826          157 GDVDGRKACRLESLKN--LEHLQVCGIRRLGDVSDVGEAKRLELD-------KKKYLSCLRLRFDKKKEGGERRKNEDDQ  227 (418)
Q Consensus       157 ~~~~~~~~~~~~~l~~--L~~L~~l~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~  227 (418)
                       .       ....+..  +++|+.+++.........    ...+.       .+++|+.|++++|...            
T Consensus       391 -~-------lp~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~~~~~~~~~~~L~~L~Ls~N~l~------------  446 (636)
T 4eco_A          391 -Y-------IPNIFDAKSVSVMSAIDFSYNEIGSVD----GKNFDPLDPTPFKGINVSSINLSNNQIS------------  446 (636)
T ss_dssp             -S-------CCSCCCTTCSSCEEEEECCSSCTTTTT----TCSSCTTCSSCCCCCCEEEEECCSSCCC------------
T ss_pred             -c-------cchhhhhcccCccCEEECcCCcCCCcc----hhhhcccccccccCCCCCEEECcCCccC------------
Confidence             1       1122222  336666666544321111    11222       5678999999998753            


Q ss_pred             hhhh-hCCCCCCCcEEEEeeecCCCCCchhhh-cC-------CCccEEEeeCCCCCCCCCC-CC--CCCccchhcccccc
Q 014826          228 LLLE-ALRPPLDLKELEIQFNRGNTVFPSWMT-SL-------TNLKSLGLSLCENCEQLPP-LG--KLPSLEQLFISYMS  295 (418)
Q Consensus       228 ~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~-------~~L~~L~l~~~~~~~~~~~-l~--~l~~L~~L~L~~~~  295 (418)
                      .++. .+..+++|++|++++|.+. .+|.... ..       ++|+.|++++|.+. .+|. +.  .+++|+.|++++|.
T Consensus       447 ~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~  524 (636)
T 4eco_A          447 KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS  524 (636)
T ss_dssp             SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred             cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence            1222 2345789999999999776 5555433 22       29999999999888 5554 54  89999999999998


Q ss_pred             cceeccccccCCCCCccCCCCCccccccCCccccccccccc------ccccccccccccCCcccccCCCccEEEEecCCC
Q 014826          296 SVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLM------ELEEWDYGITRTGNTVINIMPHLSSLVIDSCYE  369 (418)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~  369 (418)
                       +..+|..                 +..+++|+.|+++++.      -...++...        ..+++|++|++++| .
T Consensus       525 -l~~ip~~-----------------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--------~~l~~L~~L~Ls~N-~  577 (636)
T 4eco_A          525 -FSKFPTQ-----------------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--------TLCPSLTQLQIGSN-D  577 (636)
T ss_dssp             -CSSCCCG-----------------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--------GGCSSCCEEECCSS-C
T ss_pred             -CCCcChh-----------------hhcCCCCCEEECCCCcccccCcccccChHHH--------hcCCCCCEEECCCC-c
Confidence             5445543                 4578999999996543      233333333        47999999999999 5


Q ss_pred             CCcCCccccCCCCccEEEeccCCchh
Q 014826          370 LKALPDHIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       370 l~~~~~~~~~~~~L~~L~l~~c~~l~  395 (418)
                      +..+|..+.  ++|+.|++++|+...
T Consensus       578 l~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          578 IRKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CCccCHhHh--CcCCEEECcCCCCcc
Confidence            688987644  899999999998544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=6.7e-28  Score=237.00  Aligned_cols=135  Identities=19%  Similarity=0.169  Sum_probs=107.5

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      ..+|..+.  ++|++|++++|.     +++ ..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus        13 ~~ip~~~~--~~L~~L~Ls~n~-----i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l   84 (520)
T 2z7x_B           13 IHVPKDLS--QKTTILNISQNY-----ISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI   84 (520)
T ss_dssp             SSCCCSCC--TTCSEEECCSSC-----CCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccc--ccccEEECCCCc-----ccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec
Confidence            45787666  799999999998     444 2345689999999999999987766678899999999999999999988


Q ss_pred             chhhhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCccccccccc--ceecceeecC
Q 014826           88 PETLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGL--RTLGEFRVSA  155 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  155 (418)
                      |..  .+++|++|++++|.+.. .+|..++++++|++|++++|.+.+   ..+..+++|  +.|++.++..
T Consensus        85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            866  89999999999998655 567889999999999999886543   334555566  7777666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=1.8e-28  Score=237.01  Aligned_cols=347  Identities=18%  Similarity=0.181  Sum_probs=231.3

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHH-HHhhccccccceeeeCCCCCcc
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEI-LRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      .++|. +.  ++|++|+|++|.     +++ ..+..+.++++|++|+++++.+.+.+ +..+.++++|++|++++|.+..
T Consensus        23 ~~lp~-l~--~~l~~L~Ls~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~   93 (455)
T 3v47_A           23 HQVPE-LP--AHVNYVDLSLNS-----IAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ   93 (455)
T ss_dssp             SSCCC-CC--TTCCEEECCSSC-----CCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred             ccCCC-CC--CccCEEEecCCc-----cCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence            34665 33  689999999987     444 23555888999999999998765444 4567889999999999998875


Q ss_pred             C-chhhhcCCCCcEEeccCccCcccCChh--hhccccccEEeccCCcccccCCcc-cccccccceecceeecCCCCCCCc
Q 014826           87 L-PETLCELYNLEKLDISYCFNLKELPEG--IGKLINMKHLLNRGTNSLRYMPVG-IGRLTGLRTLGEFRVSAGGDVDGR  162 (418)
Q Consensus        87 l-~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~  162 (418)
                      + |..+.++++|++|++++|.+.+..+..  ++++++|++|++++|.+.+..|.. +.++++|++|++.++......   
T Consensus        94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---  170 (455)
T 3v47_A           94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC---  170 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC---
T ss_pred             cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC---
Confidence            5 677888999999999999865545544  788899999999998766665665 788899999988877654211   


Q ss_pred             cccccccccCCcccccccccccCC--Ccc--hhhhhhhhcCCcccccceEeeccccc-----------------------
Q 014826          163 KACRLESLKNLEHLQVCGIRRLGD--VSD--VGEAKRLELDKKKYLSCLRLRFDKKK-----------------------  215 (418)
Q Consensus       163 ~~~~~~~l~~L~~L~~l~~~~~~~--~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~-----------------------  215 (418)
                       ...+..+.. ..++.+++.....  ++.  .+......+..+++|++|++++|...                       
T Consensus       171 -~~~l~~l~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          171 -EEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             -TTTSGGGTT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             -hhhhhcccc-ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence             111111110 2233332222111  110  00011111223345555555555421                       


Q ss_pred             ----CCCCCccccchhhhhhhC--CCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccch
Q 014826          216 ----EGGERRKNEDDQLLLEAL--RPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQ  288 (418)
Q Consensus       216 ----~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~  288 (418)
                          ........ ........+  ...++|++|++++|.+....+.++..+++|+.|++++|.+.+..+. +..+++|+.
T Consensus       249 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  327 (455)
T 3v47_A          249 SYNMGSSFGHTN-FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK  327 (455)
T ss_dssp             CTTTSCCTTCCS-SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccccccccchhh-hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence                00000000 000000000  1236899999999988877888899999999999999988876664 888999999


Q ss_pred             hcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826          289 LFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY  368 (418)
Q Consensus       289 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~  368 (418)
                      |++++|. ++.++...                +..+++|++|+++++ +++.+...       .+..+++|++|++++| 
T Consensus       328 L~Ls~N~-l~~~~~~~----------------~~~l~~L~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~L~L~~N-  381 (455)
T 3v47_A          328 LNLSQNF-LGSIDSRM----------------FENLDKLEVLDLSYN-HIRALGDQ-------SFLGLPNLKELALDTN-  381 (455)
T ss_dssp             EECCSSC-CCEECGGG----------------GTTCTTCCEEECCSS-CCCEECTT-------TTTTCTTCCEEECCSS-
T ss_pred             EECCCCc-cCCcChhH----------------hcCcccCCEEECCCC-cccccChh-------hccccccccEEECCCC-
Confidence            9999997 55554332                457899999999995 55555322       2247899999999998 


Q ss_pred             CCCcCCc-cccCCCCccEEEeccCCchh
Q 014826          369 ELKALPD-HIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       369 ~l~~~~~-~~~~~~~L~~L~l~~c~~l~  395 (418)
                      .+++++. .+..+++|+.|++++|+.-+
T Consensus       382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          382 QLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccCCHhHhccCCcccEEEccCCCccc
Confidence            6877775 45789999999999998543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.3e-28  Score=247.25  Aligned_cols=324  Identities=15%  Similarity=0.184  Sum_probs=254.0

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHH----------------HHHHHhc--cCCCccEEecCCCCCcHHHHHhhccc
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAE----------------IVEELFR--ESTSLRALDVSQVSLPTEILRNIKKL   71 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l   71 (418)
                      +|..++++++|++|+|++|.     +++.                .+|..+.  ++++|++|++++|.+.+.+|..+.++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCHHHhcccCCCEEECcCCc-----cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            89999999999999999998     4431                1566677  99999999999999888899999999


Q ss_pred             cccceeeeCCCC-Cc--cCchhhhcC------CCCcEEeccCccCcccCCh--hhhccccccEEeccCCcccccCCcccc
Q 014826           72 VHLRYLNLRFPK-IV--KLPETLCEL------YNLEKLDISYCFNLKELPE--GIGKLINMKHLLNRGTNSLRYMPVGIG  140 (418)
Q Consensus        72 ~~L~~L~l~~~~-l~--~l~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~  140 (418)
                      ++|++|++++|. ++  .+|..+..+      ++|++|++++|.+. .+|.  .++++++|++|++++|.+.+.+| .+.
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~  350 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG  350 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence            999999999998 87  488888776      99999999999955 8998  89999999999999997777899 899


Q ss_pred             cccccceecceeecCCCCCCCccccccccccCCcc-cccccccccC--CCcchhhhhhhhcCC--cccccceEeeccccc
Q 014826          141 RLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH-LQVCGIRRLG--DVSDVGEAKRLELDK--KKYLSCLRLRFDKKK  215 (418)
Q Consensus       141 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~l~~~~~~--~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~  215 (418)
                      .+++|+.|++.++...        .....+..++. |+.+++....  .++.       .+..  +++|+.|++++|...
T Consensus       351 ~l~~L~~L~L~~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-------~~~~~~l~~L~~L~Ls~N~l~  415 (636)
T 4eco_A          351 SEIKLASLNLAYNQIT--------EIPANFCGFTEQVENLSFAHNKLKYIPN-------IFDAKSVSVMSAIDFSYNEIG  415 (636)
T ss_dssp             EEEEESEEECCSSEEE--------ECCTTSEEECTTCCEEECCSSCCSSCCS-------CCCTTCSSCEEEEECCSSCTT
T ss_pred             CCCCCCEEECCCCccc--------cccHhhhhhcccCcEEEccCCcCcccch-------hhhhcccCccCEEECcCCcCC
Confidence            9999999999887653        22334555555 6666555433  2222       2233  348999999999753


Q ss_pred             CCCCCccccchhhhhhhCC-------CCCCCcEEEEeeecCCCCCchhh-hcCCCccEEEeeCCCCCCCCCC--CC----
Q 014826          216 EGGERRKNEDDQLLLEALR-------PPLDLKELEIQFNRGNTVFPSWM-TSLTNLKSLGLSLCENCEQLPP--LG----  281 (418)
Q Consensus       216 ~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~--l~----  281 (418)
                                 ...+..+.       .+++|++|++++|.+. .+|..+ ..+++|+.|++++|.+. .+|.  +.    
T Consensus       416 -----------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~  482 (636)
T 4eco_A          416 -----------SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE  482 (636)
T ss_dssp             -----------TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred             -----------CcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence                       22334444       6789999999999776 556554 57999999999999887 5553  22    


Q ss_pred             ---CCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCC
Q 014826          282 ---KLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPH  358 (418)
Q Consensus       282 ---~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~  358 (418)
                         .+++|+.|++++|. ++.++...+               ...+++|+.|+++++ +++.++....        .+++
T Consensus       483 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~---------------~~~l~~L~~L~Ls~N-~l~~ip~~~~--------~l~~  537 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNK-LTKLSDDFR---------------ATTLPYLVGIDLSYN-SFSKFPTQPL--------NSST  537 (636)
T ss_dssp             ECTTGGGCCEEECCSSC-CCBCCGGGS---------------TTTCTTCCEEECCSS-CCSSCCCGGG--------GCSS
T ss_pred             cccccCCccEEECcCCc-CCccChhhh---------------hccCCCcCEEECCCC-CCCCcChhhh--------cCCC
Confidence               23499999999998 666665422               127899999999994 5666665544        8999


Q ss_pred             ccEEEEec------CCCCCcCCccccCCCCccEEEeccCCc
Q 014826          359 LSSLVIDS------CYELKALPDHIHQTTTLKRLWILNCGP  393 (418)
Q Consensus       359 L~~L~l~~------c~~l~~~~~~~~~~~~L~~L~l~~c~~  393 (418)
                      |++|++++      |.....+|..+..+++|+.|++++|+.
T Consensus       538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            99999964      433557888888899999999999985

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=5.9e-28  Score=247.04  Aligned_cols=324  Identities=14%  Similarity=0.172  Sum_probs=245.8

Q ss_pred             CCcccc--ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC-CcH-HHHHhhcccc-------ccceee
Q 014826           10 LPVSTR--RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS-LPT-EILRNIKKLV-------HLRYLN   78 (418)
Q Consensus        10 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~   78 (418)
                      +|..+.  ++++|++|+|++|.    ....  +|..+.++++|++|++++|. +.+ .+|..+.+++       +|++|+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~----l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~  554 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCP----NMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY  554 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCT----TCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred             CChhhhhccCCCCCEEECcCCC----CCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence            888877  99999999999997    2232  56779999999999999998 787 8888877776       999999


Q ss_pred             eCCCCCccCch--hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccc-cceecceeecC
Q 014826           79 LRFPKIVKLPE--TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTG-LRTLGEFRVSA  155 (418)
Q Consensus        79 l~~~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~  155 (418)
                      +++|.+..+|.  .+..+++|+.|++++|.+. .+| .++++++|++|++++|.+. .+|..+.++++ |+.|++.+|..
T Consensus       555 Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred             eeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence            99999999998  8999999999999999955 888 7999999999999999665 89999999999 99999998876


Q ss_pred             CCCCCCccccccccccCC--cccccccccccCC---CcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhh
Q 014826          156 GGDVDGRKACRLESLKNL--EHLQVCGIRRLGD---VSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLL  230 (418)
Q Consensus       156 ~~~~~~~~~~~~~~l~~L--~~L~~l~~~~~~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  230 (418)
                      . .       ....+..+  ++|+.+++.....   ++.+..  ......+++|+.|++++|...            .++
T Consensus       632 ~-~-------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~--~l~~~~~~~L~~L~Ls~N~L~------------~lp  689 (876)
T 4ecn_A          632 K-Y-------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC--SMDDYKGINASTVTLSYNEIQ------------KFP  689 (876)
T ss_dssp             C-S-------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS--CTTTCCCCCEEEEECCSSCCC------------SCC
T ss_pred             C-c-------CchhhhccccCCCCEEECcCCcCCCccccchh--hhccccCCCcCEEEccCCcCC------------ccC
Confidence            5 1       11222222  3366655554322   121110  001113458999999998753            233


Q ss_pred             hh-CCCCCCCcEEEEeeecCCCCCchhhhc--------CCCccEEEeeCCCCCCCCCC-CC--CCCccchhcccccccce
Q 014826          231 EA-LRPPLDLKELEIQFNRGNTVFPSWMTS--------LTNLKSLGLSLCENCEQLPP-LG--KLPSLEQLFISYMSSVK  298 (418)
Q Consensus       231 ~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~--------~~~L~~L~l~~~~~~~~~~~-l~--~l~~L~~L~L~~~~~~~  298 (418)
                      .. +..+++|+.|++++|.+. .+|..+..        +++|+.|++++|.+. .+|. +.  .+++|+.|++++|. +.
T Consensus       690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~  766 (876)
T 4ecn_A          690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FS  766 (876)
T ss_dssp             HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CS
T ss_pred             HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CC
Confidence            33 346789999999999766 66665443        239999999999887 5554 54  89999999999998 54


Q ss_pred             eccccccCCCCCccCCCCCccccccCCccccccccccc------ccccccccccccCCcccccCCCccEEEEecCCCCCc
Q 014826          299 RVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLM------ELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKA  372 (418)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  372 (418)
                      .++..                 +..+++|+.|++++++      -...++..        +..+++|++|++++| .+..
T Consensus       767 ~lp~~-----------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~--------l~~L~~L~~L~Ls~N-~L~~  820 (876)
T 4ecn_A          767 SFPTQ-----------------PLNSSQLKAFGIRHQRDAEGNRILRQWPTG--------ITTCPSLIQLQIGSN-DIRK  820 (876)
T ss_dssp             SCCCG-----------------GGGCTTCCEEECCCCBCTTCCBCCCCCCTT--------GGGCSSCCEEECCSS-CCCB
T ss_pred             ccchh-----------------hhcCCCCCEEECCCCCCcccccccccChHH--------HhcCCCCCEEECCCC-CCCc
Confidence            45433                 4578999999998743      22333323        347999999999999 5688


Q ss_pred             CCccccCCCCccEEEeccCCchh
Q 014826          373 LPDHIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       373 ~~~~~~~~~~L~~L~l~~c~~l~  395 (418)
                      +|..+.  ++|+.|+|++|+...
T Consensus       821 Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          821 VDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCSCCC--SSSCEEECCSCTTCE
T ss_pred             cCHhhc--CCCCEEECCCCCCCc
Confidence            987644  799999999998543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=3.9e-27  Score=219.50  Aligned_cols=307  Identities=16%  Similarity=0.231  Sum_probs=233.5

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC   92 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~   92 (418)
                      .+..+++|++|+++++.     +.+  ++. +..+++|++|++++|.+.+ ++. +.++++|++|++++|.++.++ .+.
T Consensus        39 ~~~~l~~L~~L~l~~~~-----i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~-~~~  107 (347)
T 4fmz_A           39 TQEELESITKLVVAGEK-----VAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS-ALQ  107 (347)
T ss_dssp             CHHHHTTCSEEECCSSC-----CCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred             cchhcccccEEEEeCCc-----ccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch-HHc
Confidence            45689999999999998     444  333 8889999999999998553 333 889999999999999999886 588


Q ss_pred             cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826           93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN  172 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  172 (418)
                      .+++|++|++++|. +..++. +..+++|++|++++|.....++ .+..+++|++|++.++....      .   ..+..
T Consensus       108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~------~---~~~~~  175 (347)
T 4fmz_A          108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD------V---TPIAN  175 (347)
T ss_dssp             TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC------C---GGGGG
T ss_pred             CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC------c---hhhcc
Confidence            99999999999998 556665 8899999999999996555444 48899999999998876551      1   12556


Q ss_pred             CcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC
Q 014826          173 LEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV  252 (418)
Q Consensus       173 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  252 (418)
                      +++|+.+++..... ....     .+..+++|+.+++.++....             ...+..+++|++|++++|.+...
T Consensus       176 l~~L~~L~l~~n~l-~~~~-----~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~L~~L~l~~n~l~~~  236 (347)
T 4fmz_A          176 LTDLYSLSLNYNQI-EDIS-----PLASLTSLHYFTAYVNQITD-------------ITPVANMTRLNSLKIGNNKITDL  236 (347)
T ss_dssp             CTTCSEEECTTSCC-CCCG-----GGGGCTTCCEEECCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCCEEEccCCcc-cccc-----cccCCCccceeecccCCCCC-------------CchhhcCCcCCEEEccCCccCCC
Confidence            66666666654432 1111     15567899999999887531             11156789999999999966544


Q ss_pred             CchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccc
Q 014826          253 FPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRI  332 (418)
Q Consensus       253 ~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  332 (418)
                       +. +..+++|+.|++++|.+.. ++.+..+++|+.|++++|. +..++.                  ...+++|+.|++
T Consensus       237 -~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~------------------~~~l~~L~~L~L  294 (347)
T 4fmz_A          237 -SP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDISV------------------LNNLSQLNSLFL  294 (347)
T ss_dssp             -GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGG------------------GGGCTTCSEEEC
T ss_pred             -cc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCChh------------------hcCCCCCCEEEC
Confidence             33 7899999999999997664 4668889999999999997 554421                  457899999999


Q ss_pred             ccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCc
Q 014826          333 EGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP  393 (418)
Q Consensus       333 ~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~  393 (418)
                      ++| .+.......       +..+++|++|++++| .+++++. +..+++|+.|++++|+.
T Consensus       295 ~~n-~l~~~~~~~-------l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          295 NNN-QLGNEDMEV-------IGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CSS-CCCGGGHHH-------HHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             cCC-cCCCcChhH-------hhccccCCEEEccCC-ccccccC-hhhhhccceeehhhhcc
Confidence            996 444433222       237899999999999 4777765 66799999999999973

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=2.2e-27  Score=230.81  Aligned_cols=305  Identities=20%  Similarity=0.198  Sum_probs=192.2

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  +++++|+|++|.     ++. ..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus        24 ~~ip~~~~--~~l~~L~L~~n~-----l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   95 (477)
T 2id5_A           24 VAVPEGIP--TETRLLDLGKNR-----IKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI   95 (477)
T ss_dssp             SSCCSCCC--TTCSEEECCSSC-----CCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CcCCCCCC--CCCcEEECCCCc-----cce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence            34666554  478888888887     444 2244577888888888888876655566778888888888888888877


Q ss_pred             ch-hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826           88 PE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR  166 (418)
Q Consensus        88 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  166 (418)
                      |. .+.++++|++|++++|.+....+..++++++|++|++++|.+....+..+..+++|+.|++.++....       ..
T Consensus        96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~  168 (477)
T 2id5_A           96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-------IP  168 (477)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-------CC
T ss_pred             CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-------cC
Confidence            64 46778888888888888655556677888888888888886655566677788888888877665431       00


Q ss_pred             cccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826          167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF  246 (418)
Q Consensus       167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (418)
                                                  ...+..+++|+.|++.+|...           ......+..+++|++|++++
T Consensus       169 ----------------------------~~~l~~l~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          169 ----------------------------TEALSHLHGLIVLRLRHLNIN-----------AIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             ----------------------------HHHHTTCTTCCEEEEESCCCC-----------EECTTCSCSCTTCCEEEEEC
T ss_pred             ----------------------------hhHhcccCCCcEEeCCCCcCc-----------EeChhhcccCcccceeeCCC
Confidence                                        112334456666666665432           11123455566666666666


Q ss_pred             ecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC--CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccC
Q 014826          247 NRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP--LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAF  324 (418)
Q Consensus       247 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (418)
                      |.....++.......+|+.|++++|.+.. ++.  +..+++|+.|++++|. +..++...                +..+
T Consensus       210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~----------------~~~l  271 (477)
T 2id5_A          210 WPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP-ISTIEGSM----------------LHEL  271 (477)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSC-CCEECTTS----------------CTTC
T ss_pred             CccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCc-CCccChhh----------------cccc
Confidence            65555555555555567777777665543 331  5566667777776666 44443322                2355


Q ss_pred             CcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccEEEeccCCc
Q 014826          325 PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKRLWILNCGP  393 (418)
Q Consensus       325 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~  393 (418)
                      ++|+.|+++++ +++.+...       .+..+++|++|++++| .++.++. .+..+++|+.|++++||.
T Consensus       272 ~~L~~L~L~~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          272 LRLQEIQLVGG-QLAVVEPY-------AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             TTCCEEECCSS-CCSEECTT-------TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             ccCCEEECCCC-ccceECHH-------HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence            66666666663 34433211       1235667777777776 5555553 345567777777776664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=2.6e-27  Score=242.33  Aligned_cols=328  Identities=13%  Similarity=0.149  Sum_probs=249.5

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHH----------------HHHHHhc--cCCCccEEecCCCCCcHHHHHhhccc
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAE----------------IVEELFR--ESTSLRALDVSQVSLPTEILRNIKKL   71 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l   71 (418)
                      +|..|.++++|++|+|++|.     ++..                .+|..+.  ++++|++|++++|.+.+.+|..+.++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~-----Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSP-----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             hhHHHhcCCCCCEEECcCCc-----CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            89999999999999999998     4431                2555555  99999999999999888899999999


Q ss_pred             cccceeeeCCCC-Ccc--CchhhhcCC-------CCcEEeccCccCcccCCh--hhhccccccEEeccCCcccccCCccc
Q 014826           72 VHLRYLNLRFPK-IVK--LPETLCELY-------NLEKLDISYCFNLKELPE--GIGKLINMKHLLNRGTNSLRYMPVGI  139 (418)
Q Consensus        72 ~~L~~L~l~~~~-l~~--l~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l  139 (418)
                      ++|++|++++|. ++.  +|..+..++       +|++|++++|.+. .+|.  .++++++|++|++++|.+. .+| .+
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~  591 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF  591 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence            999999999998 774  887776665       9999999999955 8998  8999999999999999665 888 89


Q ss_pred             ccccccceecceeecCCCCCCCccccccccccCCcc-cccccccccCCCcchhhhhhhhcCCc--ccccceEeecccccC
Q 014826          140 GRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH-LQVCGIRRLGDVSDVGEAKRLELDKK--KYLSCLRLRFDKKKE  216 (418)
Q Consensus       140 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~l~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~  216 (418)
                      ..+++|+.|++.+|...        .....+..+++ |+.+++...... .++    ..+...  ++|+.|++++|...+
T Consensus       592 ~~L~~L~~L~Ls~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp----~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIE--------EIPEDFCAFTDQVEGLGFSHNKLK-YIP----NIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             CTTSEESEEECCSSCCS--------CCCTTSCEECTTCCEEECCSSCCC-SCC----SCCCTTCSSCEEEEECCSSCTTT
T ss_pred             cCCCcceEEECcCCccc--------cchHHHhhccccCCEEECcCCCCC-cCc----hhhhccccCCCCEEECcCCcCCC
Confidence            99999999999888764        12233445555 666555543321 111    122333  459999999997642


Q ss_pred             CCCCccccchhhhhhhCC--CCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCCCCCCCCC-C--------CCCC
Q 014826          217 GGERRKNEDDQLLLEALR--PPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCENCEQLPP-L--------GKLP  284 (418)
Q Consensus       217 ~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~-l--------~~l~  284 (418)
                      .        ...++..+.  .+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+. .+|. +        .+++
T Consensus       659 ~--------ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~  728 (876)
T 4ecn_A          659 E--------GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY  728 (876)
T ss_dssp             T--------SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred             c--------cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence            1        011111222  3468999999999766 6677665 8999999999999877 4443 2        2345


Q ss_pred             ccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEE
Q 014826          285 SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVI  364 (418)
Q Consensus       285 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l  364 (418)
                      +|+.|+|++|. +..++....               ...+++|+.|+++++ +++.++....        .+++|+.|++
T Consensus       729 ~L~~L~Ls~N~-L~~lp~~l~---------------~~~l~~L~~L~Ls~N-~L~~lp~~l~--------~L~~L~~L~L  783 (876)
T 4ecn_A          729 LLTTIDLRFNK-LTSLSDDFR---------------ATTLPYLSNMDVSYN-CFSSFPTQPL--------NSSQLKAFGI  783 (876)
T ss_dssp             GCCEEECCSSC-CCCCCGGGS---------------TTTCTTCCEEECCSS-CCSSCCCGGG--------GCTTCCEEEC
T ss_pred             CccEEECCCCC-CccchHHhh---------------hccCCCcCEEEeCCC-CCCccchhhh--------cCCCCCEEEC
Confidence            99999999997 666664422               127899999999994 5666654444        8999999999


Q ss_pred             ec------CCCCCcCCccccCCCCccEEEeccCCc
Q 014826          365 DS------CYELKALPDHIHQTTTLKRLWILNCGP  393 (418)
Q Consensus       365 ~~------c~~l~~~~~~~~~~~~L~~L~l~~c~~  393 (418)
                      ++      |.....+|..+..+++|+.|++++|+.
T Consensus       784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            87      433457788888899999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=8.1e-27  Score=231.36  Aligned_cols=135  Identities=16%  Similarity=0.140  Sum_probs=103.3

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      ..+|..+.  ++|++|++++|.     ++. ..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus        44 ~~ip~~~~--~~L~~L~Ls~N~-----i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  115 (562)
T 3a79_B           44 THVPKDLP--PRTKALSLSQNS-----ISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI  115 (562)
T ss_dssp             CSCCTTSC--TTCCEEECCSSC-----CCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             ccCCCCCC--CCcCEEECCCCC-----ccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc
Confidence            34776554  789999999998     444 2235588999999999999987666677788999999999999999988


Q ss_pred             chhhhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCccccccccc--ceecceeecC
Q 014826           88 PETLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGL--RTLGEFRVSA  155 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  155 (418)
                      |..  .+++|++|++++|.+.. ..|..++++++|++|++++|.+...   .+..+++|  +.|++.++..
T Consensus       116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            866  79999999999998444 3457889999999999998855432   34444444  7777766654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=5.4e-27  Score=222.06  Aligned_cols=308  Identities=17%  Similarity=0.141  Sum_probs=239.5

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcC
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCEL   94 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l   94 (418)
                      .++++++|+++++.     ++. ..+..+..+++|++|+++++.+.+..+..+.++++|++|++++|.++.++ ..+..+
T Consensus        43 ~l~~l~~l~l~~~~-----l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           43 TLNNQKIVTFKNST-----MRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             GGCCCSEEEEESCE-----ESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCCceEEEecCCc-----hhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            56899999999987     554 22345788999999999999866555567899999999999999998775 568899


Q ss_pred             CCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCC
Q 014826           95 YNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNL  173 (418)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  173 (418)
                      ++|++|++++|. +..+|.. ++++++|++|++++|.+....+..+.++++|++|++.++...       ...   +..+
T Consensus       117 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~---~~~l  185 (390)
T 3o6n_A          117 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------HVD---LSLI  185 (390)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-------BCC---GGGC
T ss_pred             CCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-------ccc---cccc
Confidence            999999999998 5577765 588999999999999776666777999999999999888765       112   3334


Q ss_pred             cccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCC
Q 014826          174 EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVF  253 (418)
Q Consensus       174 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  253 (418)
                      +.|+.+++.... +.        .+....+|+.|++++|....            .+  ....++|+.|++++|.+.+. 
T Consensus       186 ~~L~~L~l~~n~-l~--------~~~~~~~L~~L~l~~n~l~~------------~~--~~~~~~L~~L~l~~n~l~~~-  241 (390)
T 3o6n_A          186 PSLFHANVSYNL-LS--------TLAIPIAVEELDASHNSINV------------VR--GPVNVELTILKLQHNNLTDT-  241 (390)
T ss_dssp             TTCSEEECCSSC-CS--------EEECCSSCSEEECCSSCCCE------------EE--CCCCSSCCEEECCSSCCCCC-
T ss_pred             cccceeeccccc-cc--------ccCCCCcceEEECCCCeeee------------cc--ccccccccEEECCCCCCccc-
Confidence            455555444322 11        12234689999999887531            11  12357999999999976643 


Q ss_pred             chhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccc
Q 014826          254 PSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRI  332 (418)
Q Consensus       254 ~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  332 (418)
                       .++..+++|+.|++++|.+.+..+. +..+++|+.|++++|. ++.++..                 ...+++|+.|++
T Consensus       242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----------------~~~l~~L~~L~L  302 (390)
T 3o6n_A          242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----------------GQPIPTLKVLDL  302 (390)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS-----------------SSCCTTCCEEEC
T ss_pred             -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc-----------------cCCCCCCCEEEC
Confidence             5788999999999999988776554 8889999999999998 6555433                 346899999999


Q ss_pred             ccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchh
Q 014826          333 EGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       333 ~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~  395 (418)
                      +++ .++.++....        .+++|++|++.+| .++.++  +..+++|+.|++++|+.-.
T Consensus       303 ~~n-~l~~~~~~~~--------~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          303 SHN-HLLHVERNQP--------QFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CSS-CCCCCGGGHH--------HHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred             CCC-cceecCcccc--------ccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCccc
Confidence            996 6776665444        7899999999999 577775  5569999999999998544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=9.2e-27  Score=233.23  Aligned_cols=177  Identities=16%  Similarity=0.078  Sum_probs=100.5

Q ss_pred             cCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCC
Q 014826          198 LDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQL  277 (418)
Q Consensus       198 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  277 (418)
                      +..+++|++|++++|...            .++..+..+++|++|++++|.+....+..+..+++|+.|++++|.....+
T Consensus       274 ~~~l~~L~~L~l~~n~l~------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  341 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLS------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL  341 (606)
T ss_dssp             TTTCTTCSEEECTTSCCS------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred             hccccCCCEEeccCCccC------------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence            455667777777776542            24455667778888888877666555666777788888888887766555


Q ss_pred             CC--CCCCCccchhcccccccceecc---ccccCCCCCccCC-C------CCccccccCCcccccccccccccccccccc
Q 014826          278 PP--LGKLPSLEQLFISYMSSVKRVG---DEFLGVESDRHDS-S------SSSLVIIAFPKLKSLRIEGLMELEEWDYGI  345 (418)
Q Consensus       278 ~~--l~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~~~~~-~------~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  345 (418)
                      +.  +..+++|+.|++++|. +..+.   .........+... +      .....+..+++|+.|+++++ .++....  
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--  417 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDA--  417 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC-CEECCTT--
T ss_pred             chhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC-cCCCccc--
Confidence            43  6677888888887776 33332   1111000000000 0      00001223344444444442 1211110  


Q ss_pred             cccCCcccccCCCccEEEEecCCCCCc-CCccccCCCCccEEEeccCCchh
Q 014826          346 TRTGNTVINIMPHLSSLVIDSCYELKA-LPDHIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       346 ~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~L~l~~c~~l~  395 (418)
                          ...+..+++|++|++++|. +.. .+..+..+++|+.|++++|+..+
T Consensus       418 ----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          418 ----QSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             ----CCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             ----chhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence                1113467888888888884 443 45566778888888888887543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=2.6e-27  Score=237.26  Aligned_cols=121  Identities=17%  Similarity=0.154  Sum_probs=82.0

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhh
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETL   91 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~   91 (418)
                      .|+++++|++|++++|.     ++. +.+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+..++ ..+
T Consensus        51 ~~~~l~~L~~L~Ls~n~-----l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~  124 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCE-----IET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI  124 (606)
T ss_dssp             TTTTCTTCCEEECTTCC-----CCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC
T ss_pred             hccCCccCcEEeCCCCc-----ccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccccc
Confidence            56777777777777776     443 22444677777777777777755555666777777777777777776555 556


Q ss_pred             hcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCccc
Q 014826           92 CELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGI  139 (418)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  139 (418)
                      .++++|++|++++|.+.. .+|..++++++|++|++++|.+.+..+..+
T Consensus       125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~  173 (606)
T 3vq2_A          125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL  173 (606)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence            777777777777777443 567777777777777777775544334333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=1.2e-26  Score=232.42  Aligned_cols=351  Identities=17%  Similarity=0.087  Sum_probs=208.2

Q ss_pred             CccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-ch
Q 014826           11 PVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PE   89 (418)
Q Consensus        11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~   89 (418)
                      |..|+++++|++|++++|.     +.. ..+..|.++++|++|++++|.+.+..|..++++++|++|++++|.+..+ +.
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~-----i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~  123 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQ-----IYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI  123 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCC-----CCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGS
T ss_pred             hhHhccCccceEEECCCCc-----cce-eChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcc
Confidence            4567777777777777776     333 2345567777777777777775555566677777777777777777765 35


Q ss_pred             hhhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCcccccccccc--eecceeecCCCCCCCcc---
Q 014826           90 TLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLR--TLGEFRVSAGGDVDGRK---  163 (418)
Q Consensus        90 ~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~---  163 (418)
                      .+..+++|++|++++|.+.. ..|. +.++++|++|++++|.+....+..+..+++|+  .|++.++......+...   
T Consensus       124 ~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~  202 (606)
T 3t6q_A          124 PLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA  202 (606)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred             hhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence            56677777777777777443 2233 44477777777777755544455566666666  55554443221100000   


Q ss_pred             -----------------------------------------------------------------ccccccccCCccccc
Q 014826          164 -----------------------------------------------------------------ACRLESLKNLEHLQV  178 (418)
Q Consensus       164 -----------------------------------------------------------------~~~~~~l~~L~~L~~  178 (418)
                                                                                       ......+..+++|+.
T Consensus       203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  282 (606)
T 3t6q_A          203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE  282 (606)
T ss_dssp             EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred             cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence                                                                             000111344555555


Q ss_pred             ccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCch-hh
Q 014826          179 CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS-WM  257 (418)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l  257 (418)
                      +++..... ..    ....+..+++|++|++++|...           ...+..+..+++|++|++++|.....++. .+
T Consensus       283 L~l~~n~l-~~----lp~~l~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          283 LDLTATHL-SE----LPSGLVGLSTLKKLVLSANKFE-----------NLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             EECTTSCC-SC----CCSSCCSCTTCCEEECTTCCCS-----------BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             EeccCCcc-CC----CChhhcccccCCEEECccCCcC-----------cCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence            55544321 11    1124567788999999888743           22234555667777777777765544433 35


Q ss_pred             hcCCCccEEEeeCCCCCCCC--C-CCCCCCccchhcccccccceeccccccC-CCCCccCC-CCC-------ccccccCC
Q 014826          258 TSLTNLKSLGLSLCENCEQL--P-PLGKLPSLEQLFISYMSSVKRVGDEFLG-VESDRHDS-SSS-------SLVIIAFP  325 (418)
Q Consensus       258 ~~~~~L~~L~l~~~~~~~~~--~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~~~~~~-~~~-------~~~~~~~~  325 (418)
                      ..+++|+.|++++|.+.+..  + .+..+++|+.|++++|. +..++...+. ....+... +..       ...+..++
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            67777777777777665432  2 36667777777777765 3333222221 11111100 000       01145678


Q ss_pred             cccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCc--CC--ccccCCCCccEEEeccCCch
Q 014826          326 KLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKA--LP--DHIHQTTTLKRLWILNCGPL  394 (418)
Q Consensus       326 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~--~~~~~~~~L~~L~l~~c~~l  394 (418)
                      +|+.|+++++. +......       .+..+++|++|++++|. +.+  ++  ..+..+++|+.|++++|...
T Consensus       426 ~L~~L~l~~n~-l~~~~~~-------~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  489 (606)
T 3t6q_A          426 LLKVLNLSHSL-LDISSEQ-------LFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLS  489 (606)
T ss_dssp             TCCEEECTTCC-CBTTCTT-------TTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred             cCCEEECCCCc-cCCcCHH-------HHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccC
Confidence            99999999863 4333221       22478999999999994 543  22  35777999999999999743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=4.2e-26  Score=236.37  Aligned_cols=90  Identities=21%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             ccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-C
Q 014826          202 KYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-L  280 (418)
Q Consensus       202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l  280 (418)
                      ++|+.|++++|...           ...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. +
T Consensus       266 ~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  334 (844)
T 3j0a_A          266 SSVRHLDLSHGFVF-----------SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF  334 (844)
T ss_dssp             SCCCEEECTTCCCC-----------EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred             CCccEEECCCCccc-----------ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence            56777777776532           22245566788888888888877766777788888888888888887766554 7


Q ss_pred             CCCCccchhcccccccceecccc
Q 014826          281 GKLPSLEQLFISYMSSVKRVGDE  303 (418)
Q Consensus       281 ~~l~~L~~L~L~~~~~~~~~~~~  303 (418)
                      ..+++|+.|++++|. +..++..
T Consensus       335 ~~l~~L~~L~L~~N~-i~~~~~~  356 (844)
T 3j0a_A          335 YGLPKVAYIDLQKNH-IAIIQDQ  356 (844)
T ss_dssp             SSCTTCCEEECCSCC-CCCCCSS
T ss_pred             cCCCCCCEEECCCCC-CCccChh
Confidence            788888888888886 5555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=2e-26  Score=230.79  Aligned_cols=141  Identities=21%  Similarity=0.149  Sum_probs=119.6

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  ++|++|++++|.     ++. ..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+..+
T Consensus        24 ~~ip~~~~--~~l~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~   95 (606)
T 3vq2_A           24 SKVPDDIP--SSTKNIDLSFNP-----LKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF   95 (606)
T ss_dssp             SSCCTTSC--TTCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred             ccCCCCCC--CCcCEEECCCCC-----cCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc
Confidence            45777665  699999999998     544 2344589999999999999997766677899999999999999999877


Q ss_pred             -chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCC
Q 014826           88 -PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        88 -~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                       |..+.++++|++|++++|.+....+..++++++|++|++++|.+.+ .+|..++++++|++|++.++...
T Consensus        96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence             7889999999999999999554444679999999999999997655 57999999999999999887654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=8.7e-27  Score=230.63  Aligned_cols=171  Identities=19%  Similarity=0.157  Sum_probs=111.0

Q ss_pred             CcccccceEeecccccCCCCCccccchhhh---hhhCCCCCCCcEEEEeeecCCCCC--chhhhcCCCccEEEeeCCCCC
Q 014826          200 KKKYLSCLRLRFDKKKEGGERRKNEDDQLL---LEALRPPLDLKELEIQFNRGNTVF--PSWMTSLTNLKSLGLSLCENC  274 (418)
Q Consensus       200 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~  274 (418)
                      .+++|+.|++++|...           ...   ...+..+++|++|++++|.+....  +..+..+++|+.|++++|.+.
T Consensus       332 ~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          332 HLKSLEFLDLSENLMV-----------EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             HCTTCCEEECCSSCCC-----------HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cCccccEEEccCCccc-----------cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence            3566666666666532           222   233567788888888888554332  134678889999999999777


Q ss_pred             CCCCCCCCCCccchhcccccccceeccccccCCCCCccCC-CCCcc--ccccCCcccccccccccccccccccccccCCc
Q 014826          275 EQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-SSSSL--VIIAFPKLKSLRIEGLMELEEWDYGITRTGNT  351 (418)
Q Consensus       275 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~  351 (418)
                      .....+..+++|+.|++++|. ++.++......  .+... +...+  ....+++|++|+++++ +++.++..       
T Consensus       401 ~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~--L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~-------  469 (549)
T 2z81_A          401 PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQT--LEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA-------  469 (549)
T ss_dssp             CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTT--CSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG-------
T ss_pred             cCChhhcccccccEEECCCCC-cccccchhcCC--ceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc-------
Confidence            433337778889999998887 55444332110  00000 00000  1236788888888884 56665532       


Q ss_pred             ccccCCCccEEEEecCCCCCcCC-ccccCCCCccEEEeccCCchh
Q 014826          352 VINIMPHLSSLVIDSCYELKALP-DHIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       352 ~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~  395 (418)
                        ..+++|++|++++| .++.++ ..+..+++|+.|++++|+..+
T Consensus       470 --~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          470 --SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             --GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred             --ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCccC
Confidence              25899999999998 676665 457789999999999998544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=1.2e-25  Score=216.50  Aligned_cols=310  Identities=18%  Similarity=0.160  Sum_probs=233.5

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      ..-+..++++++|++|++++|.     +++  ++ .+..+++|++|++++|.+.+ ++  ++.+++|++|++++|.++.+
T Consensus        32 ~~~~~~~~~l~~L~~L~Ls~n~-----l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~  100 (457)
T 3bz5_A           32 ATDTISEEQLATLTSLDCHNSS-----ITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL  100 (457)
T ss_dssp             TTSEEEHHHHTTCCEEECCSSC-----CCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             cccccChhHcCCCCEEEccCCC-----ccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee
Confidence            3345578899999999999998     554  34 38999999999999998655 33  88999999999999999988


Q ss_pred             chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccc
Q 014826           88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL  167 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  167 (418)
                      +  +..+++|++|++++|. +..++  ++.+++|++|++++|.+.+ ++  ++.+++|+.|++..+.....      .  
T Consensus       101 ~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~------~--  164 (457)
T 3bz5_A          101 D--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITK------L--  164 (457)
T ss_dssp             C--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCC------C--
T ss_pred             e--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccc------c--
Confidence            6  7899999999999998 44465  8899999999999996554 43  78899999999988754421      1  


Q ss_pred             ccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeee
Q 014826          168 ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFN  247 (418)
Q Consensus       168 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  247 (418)
                       .+..+++|+.+++..... ...      .+..+++|+.|++++|....            .  .+..+++|++|++++|
T Consensus       165 -~~~~l~~L~~L~ls~n~l-~~l------~l~~l~~L~~L~l~~N~l~~------------~--~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          165 -DVTPQTQLTTLDCSFNKI-TEL------DVSQNKLLNRLNCDTNNITK------------L--DLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             -CCTTCTTCCEEECCSSCC-CCC------CCTTCTTCCEEECCSSCCSC------------C--CCTTCTTCSEEECCSS
T ss_pred             -ccccCCcCCEEECCCCcc-cee------ccccCCCCCEEECcCCcCCe------------e--ccccCCCCCEEECcCC
Confidence             345566666666654321 111      15677899999999987642            1  3677899999999999


Q ss_pred             cCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccc----------hhcccccccceeccccccCCCCCccCCCCC
Q 014826          248 RGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLE----------QLFISYMSSVKRVGDEFLGVESDRHDSSSS  317 (418)
Q Consensus       248 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~----------~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (418)
                      .+.. +|  +..+++|+.|++++|.+.+..  +..+++|+          .|++++|.....++                
T Consensus       223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----------------  281 (457)
T 3bz5_A          223 KLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----------------  281 (457)
T ss_dssp             CCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----------------
T ss_pred             cccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc----------------
Confidence            7665 55  778999999999999877643  34455554          44555554333332                


Q ss_pred             ccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCc
Q 014826          318 SLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP  393 (418)
Q Consensus       318 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~  393 (418)
                         ...+++|+.|++++|..+..++.........++..+++|++|++++| .++.++  +..+++|+.|++++|+.
T Consensus       282 ---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l  351 (457)
T 3bz5_A          282 ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI  351 (457)
T ss_dssp             ---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred             ---ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence               34679999999999888877775444344445667889999999988 677764  66799999999988873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=8.3e-26  Score=218.85  Aligned_cols=320  Identities=16%  Similarity=0.187  Sum_probs=149.7

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE   93 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~   93 (418)
                      +..+++|++|++++|.     +++  ++. +..+++|++|++++|.+.+..+  +.++++|++|++++|.++.++. +..
T Consensus        64 ~~~l~~L~~L~Ls~n~-----l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~  132 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQ-----LTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKN  132 (466)
T ss_dssp             GGGCTTCCEEECCSSC-----CCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred             hhhhcCCCEEECCCCc-----cCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcC
Confidence            5666666666666665     333  222 6666666666666666433222  5666666666666666666554 566


Q ss_pred             CCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCC
Q 014826           94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNL  173 (418)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  173 (418)
                      +++|++|++++|. +..++. ++++++|++|+++++ .. .++ .+.++++|+.|++.++....         +..+..+
T Consensus       133 l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~-~~-~~~-~~~~l~~L~~L~l~~n~l~~---------~~~l~~l  198 (466)
T 1o6v_A          133 LTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ-VT-DLK-PLANLTTLERLDISSNKVSD---------ISVLAKL  198 (466)
T ss_dssp             CTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES-CC-CCG-GGTTCTTCCEEECCSSCCCC---------CGGGGGC
T ss_pred             CCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc-cc-Cch-hhccCCCCCEEECcCCcCCC---------ChhhccC
Confidence            6666666666665 333332 445555555555322 11 111 14455555555555444321         1122333


Q ss_pred             cccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCC
Q 014826          174 EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVF  253 (418)
Q Consensus       174 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  253 (418)
                      ++|+.+++........ .     .+..+++|+.|++++|....             ...+..+++|++|++++|.+....
T Consensus       199 ~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~  259 (466)
T 1o6v_A          199 TNLESLIATNNQISDI-T-----PLGILTNLDELSLNGNQLKD-------------IGTLASLTNLTDLDLANNQISNLA  259 (466)
T ss_dssp             TTCSEEECCSSCCCCC-G-----GGGGCTTCCEEECCSSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             CCCCEEEecCCccccc-c-----cccccCCCCEEECCCCCccc-------------chhhhcCCCCCEEECCCCccccch
Confidence            3333333332211100 0     02233445555555444321             012333444555555544332222


Q ss_pred             chhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCcc-----CCCCCccccccCCccc
Q 014826          254 PSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRH-----DSSSSSLVIIAFPKLK  328 (418)
Q Consensus       254 ~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~  328 (418)
                      +  +..+++|+.|++++|.+.+. +.+..+++|+.|++++|. +..++.. ......+.     ..-........+++|+
T Consensus       260 ~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~  334 (466)
T 1o6v_A          260 P--LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQ-LEDISPI-SNLKNLTYLTLYFNNISDISPVSSLTKLQ  334 (466)
T ss_dssp             G--GTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC-CSCCGGG-GGCTTCSEEECCSSCCSCCGGGGGCTTCC
T ss_pred             h--hhcCCCCCEEECCCCccCcc-ccccCCCccCeEEcCCCc-ccCchhh-cCCCCCCEEECcCCcCCCchhhccCccCC
Confidence            1  34444455555544443322 224444444444444443 2221110 00000000     0000000023556666


Q ss_pred             ccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCch
Q 014826          329 SLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPL  394 (418)
Q Consensus       329 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l  394 (418)
                      .|+++++ .++.++         .+..+++|+.|++++| .+.+++. +..+++|+.|++++|+..
T Consensus       335 ~L~l~~n-~l~~~~---------~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          335 RLFFYNN-KVSDVS---------SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             EEECCSS-CCCCCG---------GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred             EeECCCC-ccCCch---------hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCccc
Confidence            6666664 344332         1236778888888777 4555544 566788888888887643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=8.3e-27  Score=231.85  Aligned_cols=127  Identities=17%  Similarity=0.204  Sum_probs=77.7

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hh
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TL   91 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~   91 (418)
                      .|.++++|++|++++|.     ++. +.+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+..++. .+
T Consensus        47 ~~~~l~~L~~L~Ls~n~-----i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  120 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCE-----IQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI  120 (570)
T ss_dssp             TTTTCSSCCEEECTTCC-----CCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSC
T ss_pred             HhhCCCCceEEECCCCc-----CCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccc
Confidence            56666777777777665     333 123446667777777777776444444556667777777777776666553 46


Q ss_pred             hcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCCccccccccc
Q 014826           92 CELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGL  145 (418)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  145 (418)
                      ..+++|++|++++|.+.. .+|..++++++|++|++++|.+....+..+..+++|
T Consensus       121 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            667777777777776443 356667777777777777665444334444444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=3.1e-26  Score=228.50  Aligned_cols=308  Identities=17%  Similarity=0.146  Sum_probs=239.1

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcC
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCEL   94 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l   94 (418)
                      .+++++.++++++.     ++. +.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++ ..+..+
T Consensus        49 ~l~~l~~l~l~~~~-----l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           49 TLNNQKIVTFKNST-----MRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             GGCCCSEEEESSCE-----ESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCceEEEeeCCC-----CCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            46789999999987     554 23455788999999999999976666668899999999999999998776 457899


Q ss_pred             CCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCC
Q 014826           95 YNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNL  173 (418)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  173 (418)
                      ++|++|++++|. +..+|.. ++++++|++|++++|.+.+..|..+..+++|++|++.+|...       ......   +
T Consensus       123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~---l  191 (597)
T 3oja_B          123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------HVDLSL---I  191 (597)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-------BCCGGG---C
T ss_pred             CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-------CcChhh---h
Confidence            999999999998 5566655 689999999999999777777778999999999999888765       112333   4


Q ss_pred             cccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCC
Q 014826          174 EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVF  253 (418)
Q Consensus       174 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  253 (418)
                      +.|+.+++.... +.        .+....+|+.|++++|....            ++.  ...++|+.|++++|.+.+  
T Consensus       192 ~~L~~L~l~~n~-l~--------~l~~~~~L~~L~ls~n~l~~------------~~~--~~~~~L~~L~L~~n~l~~--  246 (597)
T 3oja_B          192 PSLFHANVSYNL-LS--------TLAIPIAVEELDASHNSINV------------VRG--PVNVELTILKLQHNNLTD--  246 (597)
T ss_dssp             TTCSEEECCSSC-CS--------EEECCTTCSEEECCSSCCCE------------EEC--SCCSCCCEEECCSSCCCC--
T ss_pred             hhhhhhhcccCc-cc--------cccCCchhheeeccCCcccc------------ccc--ccCCCCCEEECCCCCCCC--
Confidence            445554444321 11        12334689999999887531            111  124789999999997664  


Q ss_pred             chhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccc
Q 014826          254 PSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRI  332 (418)
Q Consensus       254 ~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  332 (418)
                      +.++..+++|+.|++++|.+.+..|. +..+++|+.|++++|. +..++..                 ...+++|+.|++
T Consensus       247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~-----------------~~~l~~L~~L~L  308 (597)
T 3oja_B          247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----------------GQPIPTLKVLDL  308 (597)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS-----------------SSCCTTCCEEEC
T ss_pred             ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc-----------------cccCCCCcEEEC
Confidence            46788999999999999988877664 8899999999999998 6555433                 346899999999


Q ss_pred             ccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchh
Q 014826          333 EGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       333 ~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~  395 (418)
                      +++ .+..++....        .+++|+.|++++| .+..++  +..+++|+.|++++|+.-+
T Consensus       309 s~N-~l~~i~~~~~--------~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          309 SHN-HLLHVERNQP--------QFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CSS-CCCCCGGGHH--------HHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred             CCC-CCCccCcccc--------cCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCCCC
Confidence            995 5666665444        7899999999999 576665  5568999999999998544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=1.7e-26  Score=228.51  Aligned_cols=141  Identities=18%  Similarity=0.146  Sum_probs=102.4

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  ++|++|++++|.     ++. ..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+..+
T Consensus        18 ~~ip~~~~--~~L~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           18 TSIPSGLT--AAMKSLDLSFNK-----ITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             SSCCSCCC--TTCCEEECCSSC-----CCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             ccccccCC--CCccEEECcCCc-----cCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence            45666554  688888888887     443 1234477888888888888876655556778888888888888887766


Q ss_pred             ch-hhhcCCCCcEEeccCccCcc-cCChhhhccccccEEeccCCcccccCC-cccccccccceecceeecCC
Q 014826           88 PE-TLCELYNLEKLDISYCFNLK-ELPEGIGKLINMKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        88 ~~-~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +. .+..+++|++|++++|.+.. ..|..++++++|++|++++|...+.+| ..+.++++|++|++.++...
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            64 47788888888888887443 345667888888888888886455554 46778888888888777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=2.5e-26  Score=222.07  Aligned_cols=324  Identities=17%  Similarity=0.085  Sum_probs=231.6

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc-Cc
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK-LP   88 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~   88 (418)
                      .|..|+++++|++|++++|.     +...+.+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.++. ++
T Consensus        46 ~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  120 (455)
T 3v47_A           46 NETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL  120 (455)
T ss_dssp             CTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHH
T ss_pred             ChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcccc
Confidence            36789999999999999997     3321234558899999999999999776667889999999999999999874 34


Q ss_pred             hh--hhcCCCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCcccccc--cccceecceeecCCCCCCCcc
Q 014826           89 ET--LCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPVGIGRL--TGLRTLGEFRVSAGGDVDGRK  163 (418)
Q Consensus        89 ~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~  163 (418)
                      ..  +..+++|++|++++|.+....|.. ++++++|++|++++|.+.+..+..+..+  .+|+.+++..+..........
T Consensus       121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~  200 (455)
T 3v47_A          121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL  200 (455)
T ss_dssp             HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT
T ss_pred             CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc
Confidence            33  888999999999999966555655 8899999999999997777777777665  566777766655432110000


Q ss_pred             c-cccccccCCcccccccccccCCCcchhhhhhh---------------------------------hc--CCcccccce
Q 014826          164 A-CRLESLKNLEHLQVCGIRRLGDVSDVGEAKRL---------------------------------EL--DKKKYLSCL  207 (418)
Q Consensus       164 ~-~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~---------------------------------~l--~~~~~L~~L  207 (418)
                      . .....+..+++|+.+++............+..                                 .+  ...++|+.+
T Consensus       201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  280 (455)
T 3v47_A          201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC  280 (455)
T ss_dssp             THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEE
T ss_pred             cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEE
Confidence            0 00111223344555544433211111110000                                 00  023578899


Q ss_pred             EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCcc
Q 014826          208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSL  286 (418)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L  286 (418)
                      ++++|...           ...+..+..+++|++|++++|.+....+.++..+++|+.|++++|.+.+..+. +..+++|
T Consensus       281 ~l~~n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          281 DLSKSKIF-----------ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             ECCSSCCC-----------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             EecCcccc-----------ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence            99888743           33456678899999999999988877788899999999999999988665554 7889999


Q ss_pred             chhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEec
Q 014826          287 EQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDS  366 (418)
Q Consensus       287 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~  366 (418)
                      +.|++++|. +..++...                +..+++|++|++++ .+++.++...       +..+++|++|++++
T Consensus       350 ~~L~Ls~N~-l~~~~~~~----------------~~~l~~L~~L~L~~-N~l~~~~~~~-------~~~l~~L~~L~l~~  404 (455)
T 3v47_A          350 EVLDLSYNH-IRALGDQS----------------FLGLPNLKELALDT-NQLKSVPDGI-------FDRLTSLQKIWLHT  404 (455)
T ss_dssp             CEEECCSSC-CCEECTTT----------------TTTCTTCCEEECCS-SCCSCCCTTT-------TTTCTTCCEEECCS
T ss_pred             CEEECCCCc-ccccChhh----------------ccccccccEEECCC-CccccCCHhH-------hccCCcccEEEccC
Confidence            999999998 55554332                45789999999999 4677665433       24789999999999


Q ss_pred             CCCCCcCC
Q 014826          367 CYELKALP  374 (418)
Q Consensus       367 c~~l~~~~  374 (418)
                      |+.-.+.|
T Consensus       405 N~l~~~~~  412 (455)
T 3v47_A          405 NPWDCSCP  412 (455)
T ss_dssp             SCBCCCTT
T ss_pred             CCcccCCC
Confidence            96544544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=4.5e-26  Score=231.27  Aligned_cols=348  Identities=17%  Similarity=0.100  Sum_probs=188.8

Q ss_pred             Cccccccce--eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc---
Q 014826           11 PVSTRRVKR--MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV---   85 (418)
Q Consensus        11 ~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---   85 (418)
                      |..|.+++.  |++|++++|.     ++. ..+..+..+++|++|++++|.+.+..+..+.++++|++|+++++...   
T Consensus       239 ~~~~~~l~~~~L~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~  312 (680)
T 1ziw_A          239 NTTFLGLKWTNLTMLDLSYNN-----LNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI  312 (680)
T ss_dssp             TTTTGGGGGSCCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--
T ss_pred             hhHhhccCcCCCCEEECCCCC-----cCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccc
Confidence            445555554  7777777776     332 12344667777777777777655555556666677777777654322   


Q ss_pred             ---cCch----hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCccc-ccCCc-cccc--ccccceecceeec
Q 014826           86 ---KLPE----TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSL-RYMPV-GIGR--LTGLRTLGEFRVS  154 (418)
Q Consensus        86 ---~l~~----~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~l~~--l~~L~~L~l~~~~  154 (418)
                         .+|.    .+..+++|++|++++|.+.+..+..++++++|++|++++|... ..++. .+..  .++|+.|++..+.
T Consensus       313 ~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~  392 (680)
T 1ziw_A          313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK  392 (680)
T ss_dssp             ----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred             ccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence               2332    4556666777777666644444445666666666666555311 11111 1111  1234444433333


Q ss_pred             CCCCCCCccccccccccCCcccccccccccCC---Ccc------------------hhhhhhhhcCCcccccceEeeccc
Q 014826          155 AGGDVDGRKACRLESLKNLEHLQVCGIRRLGD---VSD------------------VGEAKRLELDKKKYLSCLRLRFDK  213 (418)
Q Consensus       155 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~---~~~------------------~~~~~~~~l~~~~~L~~L~l~~~~  213 (418)
                      ..       ......+..+++|+.+++.....   ++.                  ........+..+++|+.|++.++.
T Consensus       393 l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  465 (680)
T 1ziw_A          393 IS-------KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA  465 (680)
T ss_dssp             CC-------EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred             CC-------eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence            22       11112233334444433332221   110                  000001122334445555554443


Q ss_pred             ccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCC---------CCCCCCC
Q 014826          214 KKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQL---------PPLGKLP  284 (418)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------~~l~~l~  284 (418)
                      ..         .....+..+..+++|++|++++|.+....+.++..+++|+.|++++|.+....         ..+..++
T Consensus       466 l~---------~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~  536 (680)
T 1ziw_A          466 LK---------NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS  536 (680)
T ss_dssp             CB---------CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred             cc---------ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence            21         11223445566677777777777655555555666777777777777654321         1156667


Q ss_pred             ccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEE
Q 014826          285 SLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVI  364 (418)
Q Consensus       285 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l  364 (418)
                      +|+.|++++|. ++.++...                +..+++|+.|++++ .+++.++...       +..+++|++|++
T Consensus       537 ~L~~L~L~~N~-l~~i~~~~----------------~~~l~~L~~L~Ls~-N~l~~l~~~~-------~~~l~~L~~L~L  591 (680)
T 1ziw_A          537 HLHILNLESNG-FDEIPVEV----------------FKDLFELKIIDLGL-NNLNTLPASV-------FNNQVSLKSLNL  591 (680)
T ss_dssp             TCCEEECCSSC-CCCCCTTT----------------TTTCTTCCEEECCS-SCCCCCCTTT-------TTTCTTCCEEEC
T ss_pred             CCCEEECCCCC-CCCCCHHH----------------cccccCcceeECCC-CCCCcCCHhH-------hCCCCCCCEEEC
Confidence            77777777765 44444332                34678888888877 4666665433       136789999999


Q ss_pred             ecCCCCCcCCc-ccc-CCCCccEEEeccCCchhcccCC-CCCCCCC
Q 014826          365 DSCYELKALPD-HIH-QTTTLKRLWILNCGPLGERYRT-GEGEDWP  407 (418)
Q Consensus       365 ~~c~~l~~~~~-~~~-~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~  407 (418)
                      ++| .++.++. .+. .+++|+.|++++||..+ .|.. .+...|-
T Consensus       592 ~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c-~c~~~~~~~~~~  635 (680)
T 1ziw_A          592 QKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC-TCESIAWFVNWI  635 (680)
T ss_dssp             TTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB-CCCCCSSEECCS
T ss_pred             CCC-cCCccChhHhcccccccCEEEccCCCccc-CCccHHHHHHHH
Confidence            998 6777764 333 58999999999999544 4553 4555563

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=2.3e-25  Score=226.10  Aligned_cols=141  Identities=18%  Similarity=0.098  Sum_probs=103.5

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  +++++|++++|.     ++. ..+..|.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus        17 ~~ip~~~~--~~l~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l   88 (680)
T 1ziw_A           17 TQVPDDLP--TNITVLNLTHNQ-----LRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL   88 (680)
T ss_dssp             SSCCSCSC--TTCSEEECCSSC-----CCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred             cccccccC--CCCcEEECCCCC-----CCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc
Confidence            34666555  588888888887     443 2234477888888888888876665666778888888888888888877


Q ss_pred             ch-hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           88 PE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        88 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      |. .+.++++|++|++++|.+....+..++++++|++|++++|...+..+..+.++++|++|++.++...
T Consensus        89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            75 5778888888888888744333456788888888888888666666677778888888887766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=219.70  Aligned_cols=124  Identities=23%  Similarity=0.136  Sum_probs=105.8

Q ss_pred             eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcE
Q 014826           21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEK   99 (418)
Q Consensus        21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~   99 (418)
                      ++|+++++.     ++.  +|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.++.+ |..+..+++|++
T Consensus         3 ~~l~ls~n~-----l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   73 (520)
T 2z7x_B            3 FLVDRSKNG-----LIH--VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY   73 (520)
T ss_dssp             CEEECTTSC-----CSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred             ceEecCCCC-----ccc--cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence            579999998     444  443233  8999999999997766677899999999999999999877 678999999999


Q ss_pred             EeccCccCcccCChhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCC
Q 014826          100 LDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      |++++|. +..+|..  .+++|++|++++|.+.+ .+|..++++++|++|++.++...
T Consensus        74 L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           74 LDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             EECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             EecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            9999998 5578876  89999999999997765 47889999999999999988764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=5.9e-25  Score=204.71  Aligned_cols=288  Identities=18%  Similarity=0.212  Sum_probs=222.9

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++| .+..+++|++|++++|.     +++  ++. +..+++|++|++++|.+.+ + +.+.++++|++|++++|.+..+
T Consensus        57 ~~~~-~~~~~~~L~~L~l~~n~-----i~~--~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~  125 (347)
T 4fmz_A           57 ASIQ-GIEYLTNLEYLNLNGNQ-----ITD--ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI  125 (347)
T ss_dssp             CCCT-TGGGCTTCCEEECCSSC-----CCC--CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC
T ss_pred             ccch-hhhhcCCccEEEccCCc-----ccc--chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc
Confidence            3455 48899999999999998     554  344 8999999999999998554 3 3588999999999999999988


Q ss_pred             chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccc
Q 014826           88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL  167 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  167 (418)
                      +. +..+++|++|++++|.....++. +..+++|++|++++|.... ++. +..+++|+.|++.++....         .
T Consensus       126 ~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~---------~  192 (347)
T 4fmz_A          126 SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIED---------I  192 (347)
T ss_dssp             GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCC---------C
T ss_pred             hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcccc---------c
Confidence            76 88999999999999986666554 8999999999999995443 333 7889999999998876551         2


Q ss_pred             ccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeee
Q 014826          168 ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFN  247 (418)
Q Consensus       168 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  247 (418)
                      ..+..++.|+.+++........ .     .+..+++|+.|++++|....            .. .+..+++|++|++++|
T Consensus       193 ~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~~~~L~~L~l~~n~l~~------------~~-~~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          193 SPLASLTSLHYFTAYVNQITDI-T-----PVANMTRLNSLKIGNNKITD------------LS-PLANLSQLTWLEIGTN  253 (347)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCC-G-----GGGGCTTCCEEECCSSCCCC------------CG-GGTTCTTCCEEECCSS
T ss_pred             ccccCCCccceeecccCCCCCC-c-----hhhcCCcCCEEEccCCccCC------------Cc-chhcCCCCCEEECCCC
Confidence            2255666677766655432211 1     15667899999999997641            11 2778899999999999


Q ss_pred             cCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcc
Q 014826          248 RGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKL  327 (418)
Q Consensus       248 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  327 (418)
                      .+.. + ..+..+++|+.|++++|.+.+ ++.+..+++|+.|++++|. +...+...                +..+++|
T Consensus       254 ~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~----------------l~~l~~L  313 (347)
T 4fmz_A          254 QISD-I-NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQ-LGNEDMEV----------------IGGLTNL  313 (347)
T ss_dssp             CCCC-C-GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCGGGHHH----------------HHTCTTC
T ss_pred             ccCC-C-hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCc-CCCcChhH----------------hhccccC
Confidence            6654 3 467899999999999997765 4668889999999999998 44443322                4578999


Q ss_pred             cccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826          328 KSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY  368 (418)
Q Consensus       328 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~  368 (418)
                      +.|++++++ ++.++. .        ..+++|++|++++|+
T Consensus       314 ~~L~L~~n~-l~~~~~-~--------~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          314 TTLFLSQNH-ITDIRP-L--------ASLSKMDSADFANQV  344 (347)
T ss_dssp             SEEECCSSS-CCCCGG-G--------GGCTTCSEESSSCC-
T ss_pred             CEEEccCCc-cccccC-h--------hhhhccceeehhhhc
Confidence            999999964 655543 2        378999999999984

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=3e-25  Score=229.95  Aligned_cols=337  Identities=15%  Similarity=0.163  Sum_probs=209.2

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHH-HHhhccccccceeeeCCCCCcc
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEI-LRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      ..+|.   -.++|++|+|++|.     ++. ..+..|.++++|++|++++|...+.+ |..+.++++|++|++++|.+..
T Consensus        17 ~~vP~---lp~~l~~LdLs~N~-----i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           17 TQVPQ---VLNTTERLLLSFNY-----IRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             SCCCS---SCTTCCEEEEESCC-----CCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             CCCCC---CCCCcCEEECCCCc-----CCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            44665   34678888888887     443 23445788888888888888545444 5667888888888888888775


Q ss_pred             C-chhhhcCCCCcEEeccCccCcccCChh--hhccccccEEeccCCcccccCC-cccccccccceecceeecCCCCCCCc
Q 014826           87 L-PETLCELYNLEKLDISYCFNLKELPEG--IGKLINMKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFRVSAGGDVDGR  162 (418)
Q Consensus        87 l-~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~  162 (418)
                      + |..+..+++|++|++++|.+.+.+|..  ++++++|++|++++|.+.+..+ ..++++++|++|++.++.....    
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~----  163 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV----  163 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC----
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee----
Confidence            5 677888888888888888765555554  7788888888888886554433 4677888888888877665421    


Q ss_pred             cccccccccCCcccccccccccCCCcchhhhhhhhcCCcc------cccceEeecccccCCCCCc---------------
Q 014826          163 KACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKK------YLSCLRLRFDKKKEGGERR---------------  221 (418)
Q Consensus       163 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~---------------  221 (418)
                      ....+..+.. ++|+.+++.........    ...+..+.      .|+.|++++|.........               
T Consensus       164 ~~~~l~~l~~-~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l  238 (844)
T 3j0a_A          164 CEHELEPLQG-KTLSFFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL  238 (844)
T ss_dssp             CSGGGHHHHH-CSSCCCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred             CHHHcccccC-CccceEECCCCcccccc----ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence            1112222200 33333333322111000    00111122      3666666665332110000               


Q ss_pred             ----------cccchhhhhhhCCC--CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccch
Q 014826          222 ----------KNEDDQLLLEALRP--PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQ  288 (418)
Q Consensus       222 ----------~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~  288 (418)
                                ...........+..  +++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. +..+++|+.
T Consensus       239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  318 (844)
T 3j0a_A          239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV  318 (844)
T ss_dssp             CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred             ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence                      00000111122222  37899999999987777778888999999999999988776654 888999999


Q ss_pred             hcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826          289 LFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY  368 (418)
Q Consensus       289 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~  368 (418)
                      |++++|. +..+....                +..+++|+.|+++++ .+..++..       .+..+++|++|++++| 
T Consensus       319 L~Ls~N~-l~~~~~~~----------------~~~l~~L~~L~L~~N-~i~~~~~~-------~~~~l~~L~~L~Ls~N-  372 (844)
T 3j0a_A          319 LNLSYNL-LGELYSSN----------------FYGLPKVAYIDLQKN-HIAIIQDQ-------TFKFLEKLQTLDLRDN-  372 (844)
T ss_dssp             EEEESCC-CSCCCSCS----------------CSSCTTCCEEECCSC-CCCCCCSS-------CSCSCCCCCEEEEETC-
T ss_pred             EECCCCC-CCccCHHH----------------hcCCCCCCEEECCCC-CCCccChh-------hhcCCCCCCEEECCCC-
Confidence            9999997 44443322                346788888888874 44444322       1235677777777777 


Q ss_pred             CCCcCCccccCCCCccEEEeccCC
Q 014826          369 ELKALPDHIHQTTTLKRLWILNCG  392 (418)
Q Consensus       369 ~l~~~~~~~~~~~~L~~L~l~~c~  392 (418)
                      .++.++.    +++|+.|++++|+
T Consensus       373 ~l~~i~~----~~~L~~L~l~~N~  392 (844)
T 3j0a_A          373 ALTTIHF----IPSIPDIFLSGNK  392 (844)
T ss_dssp             CSCCCSS----CCSCSEEEEESCC
T ss_pred             CCCcccC----CCCcchhccCCCC
Confidence            4554433    5556666665554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=223.66  Aligned_cols=140  Identities=24%  Similarity=0.167  Sum_probs=115.7

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  +++++|++++|.     ++. ..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+
T Consensus        20 ~~ip~~l~--~~l~~L~Ls~n~-----l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~   91 (570)
T 2z63_A           20 YKIPDNLP--FSTKNLDLSFNP-----LRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (570)
T ss_dssp             SSCCSSSC--SSCCEEECCSCC-----CCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             cccCCCcc--ccccEEEccCCc-----cCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc
Confidence            45776554  489999999998     444 2234589999999999999986665566789999999999999998877


Q ss_pred             c-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCcccc-cCCcccccccccceecceeecCC
Q 014826           88 P-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        88 ~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      + ..+.++++|++|++++|. +..++. .++++++|++|++++|.+.. .+|..++++++|++|++.++...
T Consensus        92 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           92 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             CHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            6 678999999999999998 555543 68999999999999996655 47899999999999999877554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=1.3e-25  Score=212.66  Aligned_cols=291  Identities=13%  Similarity=0.082  Sum_probs=224.7

Q ss_pred             CCCCcc-ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826            8 ASLPVS-TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus         8 ~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      +++|.. |.++++|++|++++|.     +++ ..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++.
T Consensus        58 ~~l~~~~~~~l~~L~~L~L~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  131 (390)
T 3o6n_A           58 RKLPAALLDSFRQVELLNLNDLQ-----IEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS  131 (390)
T ss_dssp             SEECTHHHHHCCCCSEEECTTSC-----CCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             hhCChhHhcccccCcEEECCCCc-----ccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc
Confidence            346654 6889999999999998     444 223458999999999999999766666778999999999999999999


Q ss_pred             Cchh-hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccc
Q 014826           87 LPET-LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKAC  165 (418)
Q Consensus        87 l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  165 (418)
                      +|.. +..+++|++|++++|.+....+..++++++|++|++++|.+.. +  .+..+++|+.+++.++...         
T Consensus       132 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~l~~L~~L~l~~n~l~---------  199 (390)
T 3o6n_A          132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLS---------  199 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--CGGGCTTCSEEECCSSCCS---------
T ss_pred             CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--ccccccccceeeccccccc---------
Confidence            9865 5899999999999999655556678999999999999995543 2  3567889999998776543         


Q ss_pred             ccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEe
Q 014826          166 RLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQ  245 (418)
Q Consensus       166 ~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  245 (418)
                         .++....|+.+++..... ...+      ....++|+.|++++|....             ...+..+++|++|+++
T Consensus       200 ---~~~~~~~L~~L~l~~n~l-~~~~------~~~~~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~Ls  256 (390)
T 3o6n_A          200 ---TLAIPIAVEELDASHNSI-NVVR------GPVNVELTILKLQHNNLTD-------------TAWLLNYPGLVEVDLS  256 (390)
T ss_dssp             ---EEECCSSCSEEECCSSCC-CEEE------CCCCSSCCEEECCSSCCCC-------------CGGGGGCTTCSEEECC
T ss_pred             ---ccCCCCcceEEECCCCee-eecc------ccccccccEEECCCCCCcc-------------cHHHcCCCCccEEECC
Confidence               122333455555443322 1111      1224789999999997641             2456778999999999


Q ss_pred             eecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCC
Q 014826          246 FNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFP  325 (418)
Q Consensus       246 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (418)
                      +|.+....|..+..+++|+.|++++|.+.........+++|+.|++++|. +..++..                 ...++
T Consensus       257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----------------~~~l~  318 (390)
T 3o6n_A          257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-----------------QPQFD  318 (390)
T ss_dssp             SSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-----------------HHHHT
T ss_pred             CCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc-----------------ccccC
Confidence            99887777888999999999999999877644446789999999999997 6555543                 45789


Q ss_pred             cccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826          326 KLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY  368 (418)
Q Consensus       326 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~  368 (418)
                      +|+.|+++++ .++.++          +..+++|++|++++|+
T Consensus       319 ~L~~L~L~~N-~i~~~~----------~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          319 RLENLYLDHN-SIVTLK----------LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             TCSEEECCSS-CCCCCC----------CCTTCCCSEEECCSSC
T ss_pred             cCCEEECCCC-ccceeC----------chhhccCCEEEcCCCC
Confidence            9999999995 466554          2368999999999985

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1.9e-24  Score=209.31  Aligned_cols=318  Identities=19%  Similarity=0.204  Sum_probs=224.1

Q ss_pred             cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcC
Q 014826           15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCEL   94 (418)
Q Consensus        15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l   94 (418)
                      ..+++|++|+++++.     +..  ++. +..+++|++|++++|.+.+. +. +.++++|++|++++|.+..++. +..+
T Consensus        43 ~~l~~l~~L~l~~~~-----i~~--l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l  111 (466)
T 1o6v_A           43 TDLDQVTTLQADRLG-----IKS--IDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-LANL  111 (466)
T ss_dssp             HHHHTCCEEECCSSC-----CCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred             hHhccccEEecCCCC-----Ccc--Ccc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh-hcCC
Confidence            357899999999987     444  444 78899999999999985543 33 8899999999999999998877 8999


Q ss_pred             CCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCc
Q 014826           95 YNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLE  174 (418)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  174 (418)
                      ++|++|++++|. +..++. ++++++|++|++++|.+. .++ .+..+++|+.|++.+. ..         ....+.+++
T Consensus       112 ~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~~-~~---------~~~~~~~l~  177 (466)
T 1o6v_A          112 TNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQ-VT---------DLKPLANLT  177 (466)
T ss_dssp             TTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEES-CC---------CCGGGTTCT
T ss_pred             CCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCCc-cc---------CchhhccCC
Confidence            999999999998 555665 899999999999999543 344 4889999999998532 22         122366677


Q ss_pred             ccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCc
Q 014826          175 HLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFP  254 (418)
Q Consensus       175 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  254 (418)
                      +|+.+++..... ...     ..+..+++|+.|++.+|....             ...+..+++|++|++++|.+.. + 
T Consensus       178 ~L~~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~-~-  236 (466)
T 1o6v_A          178 TLERLDISSNKV-SDI-----SVLAKLTNLESLIATNNQISD-------------ITPLGILTNLDELSLNGNQLKD-I-  236 (466)
T ss_dssp             TCCEEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCC-C-
T ss_pred             CCCEEECcCCcC-CCC-----hhhccCCCCCEEEecCCcccc-------------cccccccCCCCEEECCCCCccc-c-
Confidence            777776665432 221     135678999999999987531             1114568999999999996654 3 


Q ss_pred             hhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCC-CCC----ccccccCCcccc
Q 014826          255 SWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-SSS----SLVIIAFPKLKS  329 (418)
Q Consensus       255 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~L~~  329 (418)
                      ..+..+++|+.|++++|.+.+.. .+..+++|+.|++++|. +..++. .......+... +..    ......+++|+.
T Consensus       237 ~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~  313 (466)
T 1o6v_A          237 GTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTY  313 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSE
T ss_pred             hhhhcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCE
Confidence            45789999999999999876544 48889999999999997 444432 11100000000 000    001344556666


Q ss_pred             cccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCc
Q 014826          330 LRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGP  393 (418)
Q Consensus       330 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~  393 (418)
                      |+++++ ++..+..         +..+++|++|++.+| .+++++ .+..+++|+.|++++|+.
T Consensus       314 L~L~~n-~l~~~~~---------~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          314 LTLYFN-NISDISP---------VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             EECCSS-CCSCCGG---------GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             EECcCC-cCCCchh---------hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence            666654 3333321         236788888888887 566664 456688888888888864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=6.5e-25  Score=217.66  Aligned_cols=348  Identities=22%  Similarity=0.151  Sum_probs=219.4

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcC
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCEL   94 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l   94 (418)
                      .|...++++++++.     ++.  +|..+  .++|++|++++|.+.+..+..+.++++|++|++++|.++.+ |..+.++
T Consensus        29 ~~~~~~~l~ls~~~-----L~~--ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   99 (562)
T 3a79_B           29 SNELESMVDYSNRN-----LTH--VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN   99 (562)
T ss_dssp             ----CCEEECTTSC-----CCS--CCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             ccCCCcEEEcCCCC-----Ccc--CCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence            55666899999998     554  44323  38999999999997666667899999999999999999877 5778999


Q ss_pred             CCCcEEeccCccCcccCChhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCCCCCCCccccccccccCC
Q 014826           95 YNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNL  173 (418)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  173 (418)
                      ++|++|++++|. +..+|..  .+++|++|++++|.+.+ .+|..++++++|++|++.++....       ..+..++.+
T Consensus       100 ~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-------~~~~~l~~L  169 (562)
T 3a79_B          100 QDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-------LDLLPVAHL  169 (562)
T ss_dssp             TTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-------TTTGGGTTS
T ss_pred             CCCCEEECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-------Cchhhhhhc
Confidence            999999999999 5678876  89999999999996655 356889999999999999877652       223333333


Q ss_pred             cccccccccccCC-----Ccc-hhh----------------------------------------------hhhhhc---
Q 014826          174 EHLQVCGIRRLGD-----VSD-VGE----------------------------------------------AKRLEL---  198 (418)
Q Consensus       174 ~~L~~l~~~~~~~-----~~~-~~~----------------------------------------------~~~~~l---  198 (418)
                       +|+.+++.....     .+. +..                                              .....+   
T Consensus       170 -~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l  248 (562)
T 3a79_B          170 -HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG  248 (562)
T ss_dssp             -CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred             -eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence             223333222110     000 000                                              000000   


Q ss_pred             ------------------------CCcccccceEeecccccCCCCCccc---------------------cchhhhhh--
Q 014826          199 ------------------------DKKKYLSCLRLRFDKKKEGGERRKN---------------------EDDQLLLE--  231 (418)
Q Consensus       199 ------------------------~~~~~L~~L~l~~~~~~~~~~~~~~---------------------~~~~~~~~--  231 (418)
                                              ....+|++|++++|...+..+....                     ........  
T Consensus       249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~  328 (562)
T 3a79_B          249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF  328 (562)
T ss_dssp             SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred             CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhh
Confidence                                    0112666677766654321110000                     00000000  


Q ss_pred             -------------------hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCC--C-CCCCCCccchh
Q 014826          232 -------------------ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQL--P-PLGKLPSLEQL  289 (418)
Q Consensus       232 -------------------~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~-~l~~l~~L~~L  289 (418)
                                         ....+++|++|++++|.+.+..|.++..+++|+.|++++|.+.+..  + .+..+++|+.|
T Consensus       329 ~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             ccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence                               0155678888888888777777777788888888888888766422  2 26778888888


Q ss_pred             ccccccccee-ccccccCC-CCCccCC-CCCcc---ccccC-CcccccccccccccccccccccccCCcccccCCCccEE
Q 014826          290 FISYMSSVKR-VGDEFLGV-ESDRHDS-SSSSL---VIIAF-PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSL  362 (418)
Q Consensus       290 ~L~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~---~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L  362 (418)
                      ++++|. +.. ++...+.. ...+... +...+   ....+ ++|+.|+++++ +++.++....        .+++|++|
T Consensus       409 ~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~--------~l~~L~~L  478 (562)
T 3a79_B          409 DVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVT--------HLQALQEL  478 (562)
T ss_dssp             ECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTT--------SSCCCSEE
T ss_pred             ECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhc--------CCCCCCEE
Confidence            888887 433 54432221 1100000 00000   11222 46777777764 5555554333        67888888


Q ss_pred             EEecCCCCCcCCcc-ccCCCCccEEEeccCCch
Q 014826          363 VIDSCYELKALPDH-IHQTTTLKRLWILNCGPL  394 (418)
Q Consensus       363 ~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l  394 (418)
                      ++++| .++.+|.. +..+++|+.|++++||..
T Consensus       479 ~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          479 NVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             ECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             ECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            88888 67778765 677888888888888854

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=9.1e-25  Score=212.34  Aligned_cols=262  Identities=20%  Similarity=0.148  Sum_probs=174.1

Q ss_pred             CccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-ch
Q 014826           11 PVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PE   89 (418)
Q Consensus        11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~   89 (418)
                      +..|.++++|++|+|++|.     ++. ..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+..+ +.
T Consensus        49 ~~~~~~l~~L~~L~L~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  122 (477)
T 2id5_A           49 QDEFASFPHLEELELNENI-----VSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY  122 (477)
T ss_dssp             TTTTTTCTTCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT
T ss_pred             HhHccCCCCCCEEECCCCc-----cCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh
Confidence            5678999999999999998     554 2356689999999999999986544444578999999999999998855 56


Q ss_pred             hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccccc
Q 014826           90 TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLES  169 (418)
Q Consensus        90 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  169 (418)
                      .+..+++|++|++++|.+....+..++++++|++|++++|.+....+..+..+++|+.|++.++...       ......
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-------~~~~~~  195 (477)
T 2id5_A          123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-------AIRDYS  195 (477)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-------EECTTC
T ss_pred             HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-------EeChhh
Confidence            7889999999999999966666678999999999999999665544556889999999999887654       112223


Q ss_pred             ccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecC
Q 014826          170 LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRG  249 (418)
Q Consensus       170 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  249 (418)
                      +..+++|+.+++.........+.    ......+|+.|++++|....           .....+..+++|++|++++|.+
T Consensus       196 ~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          196 FKRLYRLKVLEISHWPYLDTMTP----NCLYGLNLTSLSITHCNLTA-----------VPYLAVRHLVYLRFLNLSYNPI  260 (477)
T ss_dssp             SCSCTTCCEEEEECCTTCCEECT----TTTTTCCCSEEEEESSCCCS-----------CCHHHHTTCTTCCEEECCSSCC
T ss_pred             cccCcccceeeCCCCccccccCc----ccccCccccEEECcCCcccc-----------cCHHHhcCccccCeeECCCCcC
Confidence            44445555554443322221111    11112356666666654321           1112344556666666666655


Q ss_pred             CCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceecc
Q 014826          250 NTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVG  301 (418)
Q Consensus       250 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~  301 (418)
                      ....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|. ++.++
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  312 (477)
T 2id5_A          261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLE  312 (477)
T ss_dssp             CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCC
T ss_pred             CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeC
Confidence            444444455666666666666655544332 5556666666666664 44443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=5.2e-24  Score=204.99  Aligned_cols=291  Identities=14%  Similarity=0.127  Sum_probs=210.5

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      ..+| .+..+++|++|++++|.     +++  ++  +..+++|++|++++|.+.+. +  ++++++|++|++++|.++.+
T Consensus        55 ~~~~-~l~~l~~L~~L~Ls~n~-----l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l  121 (457)
T 3bz5_A           55 TDMT-GIEKLTGLTKLICTSNN-----ITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL  121 (457)
T ss_dssp             CCCT-TGGGCTTCSEEECCSSC-----CSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC
T ss_pred             ccCh-hhcccCCCCEEEccCCc-----CCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee
Confidence            3466 68999999999999998     554  32  78999999999999986653 3  88999999999999999988


Q ss_pred             chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccc
Q 014826           88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRL  167 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  167 (418)
                      +  +..+++|++|++++|.+. .++  ++.+++|++|++++|...+.+  .+..+++|+.|++.++....      . . 
T Consensus       122 ~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~------l-~-  186 (457)
T 3bz5_A          122 D--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE------L-D-  186 (457)
T ss_dssp             C--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC------C-C-
T ss_pred             c--CCCCCcCCEEECCCCccc-eec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce------e-c-
Confidence            6  889999999999999844 454  888999999999999666665  47889999999998887652      1 1 


Q ss_pred             ccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeee
Q 014826          168 ESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFN  247 (418)
Q Consensus       168 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  247 (418)
                        +..++.|+.+++..... ...      .+..+++|+.|++++|....            ++  +..+++|++|++++|
T Consensus       187 --l~~l~~L~~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~~------------ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLTE------------ID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             --CTTCTTCCEEECCSSCC-SCC------CCTTCTTCSEEECCSSCCSC------------CC--CTTCTTCSEEECCSS
T ss_pred             --cccCCCCCEEECcCCcC-Cee------ccccCCCCCEEECcCCcccc------------cC--ccccCCCCEEEeeCC
Confidence              45566666666554332 111      25678999999999998641            22  677899999999999


Q ss_pred             cCCCCCchhhhcCCCccEEE----------eeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCC
Q 014826          248 RGNTVFPSWMTSLTNLKSLG----------LSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSS  317 (418)
Q Consensus       248 ~~~~~~~~~l~~~~~L~~L~----------l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (418)
                      .+....+   ..+++|+.|+          +++|...+.+| .+.+++|+.|++++|..++.++.               
T Consensus       244 ~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~---------------  304 (457)
T 3bz5_A          244 PLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC---------------  304 (457)
T ss_dssp             CCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC---------------
T ss_pred             cCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc---------------
Confidence            7665433   3455555554          44444444433 56789999999999987777653               


Q ss_pred             ccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCC
Q 014826          318 SLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALP  374 (418)
Q Consensus       318 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  374 (418)
                           .+++|+.++++++++++.+..........++..+++|+.|++.++ .+++++
T Consensus       305 -----~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N-~l~~l~  355 (457)
T 3bz5_A          305 -----QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA-HIQDFS  355 (457)
T ss_dssp             -----TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSS-CCCBCT
T ss_pred             -----CCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCC-CCCCcc
Confidence                 223444444444444444443333222223558999999999998 565544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=7.3e-25  Score=218.59  Aligned_cols=290  Identities=13%  Similarity=0.087  Sum_probs=225.1

Q ss_pred             CCCcc-ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            9 SLPVS-TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         9 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .+|.. |+++++|++|+|++|.     +++ ..+..|..+++|++|++++|.+.+..|..++++++|++|++++|.++.+
T Consensus        65 ~lp~~~~~~l~~L~~L~L~~n~-----l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l  138 (597)
T 3oja_B           65 KLPAALLDSFRQVELLNLNDLQ-----IEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL  138 (597)
T ss_dssp             EECTHHHHHCCCCSEEECTTSC-----CCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CcCHHHHccCCCCcEEECCCCC-----CCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence            35554 6789999999999998     544 2344589999999999999997766667789999999999999999988


Q ss_pred             chh-hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826           88 PET-LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR  166 (418)
Q Consensus        88 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  166 (418)
                      |.. +..+++|++|++++|.+....|..++++++|++|++++|.+.. +  .+..+++|+.|++.++...          
T Consensus       139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~l~~L~~L~l~~n~l~----------  205 (597)
T 3oja_B          139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNLLS----------  205 (597)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C--CGGGCTTCSEEECCSSCCS----------
T ss_pred             CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c--ChhhhhhhhhhhcccCccc----------
Confidence            865 5899999999999999666666679999999999999995544 3  3567889999998776544          


Q ss_pred             cccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826          167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF  246 (418)
Q Consensus       167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (418)
                        .++....|+.+++..... .....      ...++|+.|++++|....             +..+..+++|++|++++
T Consensus       206 --~l~~~~~L~~L~ls~n~l-~~~~~------~~~~~L~~L~L~~n~l~~-------------~~~l~~l~~L~~L~Ls~  263 (597)
T 3oja_B          206 --TLAIPIAVEELDASHNSI-NVVRG------PVNVELTILKLQHNNLTD-------------TAWLLNYPGLVEVDLSY  263 (597)
T ss_dssp             --EEECCTTCSEEECCSSCC-CEEEC------SCCSCCCEEECCSSCCCC-------------CGGGGGCTTCSEEECCS
T ss_pred             --cccCCchhheeeccCCcc-ccccc------ccCCCCCEEECCCCCCCC-------------ChhhccCCCCCEEECCC
Confidence              223334455555544322 11110      113689999999998642             25567789999999999


Q ss_pred             ecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCc
Q 014826          247 NRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPK  326 (418)
Q Consensus       247 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (418)
                      |.+....|..++.+++|+.|++++|.+......+..+++|+.|++++|. +..++..                 +..+++
T Consensus       264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~-----------------~~~l~~  325 (597)
T 3oja_B          264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-----------------QPQFDR  325 (597)
T ss_dssp             SCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-----------------HHHHTT
T ss_pred             CccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc-----------------cccCCC
Confidence            9888888889999999999999999877643446779999999999998 5555543                 457899


Q ss_pred             ccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826          327 LKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY  368 (418)
Q Consensus       327 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~  368 (418)
                      |+.|+++++ .+..++          +..+++|++|++++|+
T Consensus       326 L~~L~L~~N-~l~~~~----------~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          326 LENLYLDHN-SIVTLK----------LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CSEEECCSS-CCCCCC----------CCTTCCCSEEECCSSC
T ss_pred             CCEEECCCC-CCCCcC----------hhhcCCCCEEEeeCCC
Confidence            999999995 455554          2368999999999985

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.4e-24  Score=198.86  Aligned_cols=252  Identities=21%  Similarity=0.223  Sum_probs=204.8

Q ss_pred             ceeeEEeecCCCCCCCCccHH-HHHHHhccCCCccEEecCC-CCCcHHHHHhhccccccceeeeCCCCCc-cCchhhhcC
Q 014826           18 KRMRTLLISASGSDHSSLNAE-IVEELFRESTSLRALDVSQ-VSLPTEILRNIKKLVHLRYLNLRFPKIV-KLPETLCEL   94 (418)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l   94 (418)
                      .+++.|+++++.     +++. .++..+.++++|++|++++ +.+.+.+|..+.++++|++|++++|.+. .+|..+..+
T Consensus        50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  124 (313)
T 1ogq_A           50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCEEEEEEECCC-----CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             ceEEEEECCCCC-----ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence            589999999998     3310 1455689999999999995 7777788888999999999999999987 888889999


Q ss_pred             CCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccccccc-ccceecceeecCCCCCCCccccccccccCC
Q 014826           95 YNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLT-GLRTLGEFRVSAGGDVDGRKACRLESLKNL  173 (418)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  173 (418)
                      ++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..++ +|+.|++.++...       ......+..+
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-------~~~~~~~~~l  197 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-------GKIPPTFANL  197 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-------EECCGGGGGC
T ss_pred             CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-------ccCChHHhCC
Confidence            9999999999997778999999999999999999987778999999998 9999999887654       1222333344


Q ss_pred             cccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCC
Q 014826          174 EHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVF  253 (418)
Q Consensus       174 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  253 (418)
                      + |+.+++......    ......+..+++|+.|++++|....            ....+..+++|++|++++|.+.+..
T Consensus       198 ~-L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~  260 (313)
T 1ogq_A          198 N-LAFVDLSRNMLE----GDASVLFGSDKNTQKIHLAKNSLAF------------DLGKVGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             C-CSEEECCSSEEE----ECCGGGCCTTSCCSEEECCSSEECC------------BGGGCCCCTTCCEEECCSSCCEECC
T ss_pred             c-ccEEECcCCccc----CcCCHHHhcCCCCCEEECCCCceee------------ecCcccccCCCCEEECcCCcccCcC
Confidence            3 666665543221    1122356778999999999987531            2233677899999999999888889


Q ss_pred             chhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccce
Q 014826          254 PSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVK  298 (418)
Q Consensus       254 ~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  298 (418)
                      |.++..+++|+.|++++|.+.+.+|....+++|+.+++.+|+.+.
T Consensus       261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence            999999999999999999999888888899999999999998543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=1.6e-24  Score=217.91  Aligned_cols=149  Identities=15%  Similarity=0.135  Sum_probs=110.0

Q ss_pred             hhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCC-CCC-CCCCCccchhcccccccceeccccccCCC
Q 014826          231 EALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQ-LPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVE  308 (418)
Q Consensus       231 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~  308 (418)
                      ..+..+++++.++++.|......+..+..+++++.|++++|..... .|. +..+++|+.|++++|. ++.++...    
T Consensus       439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~----  513 (635)
T 4g8a_A          439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA----  513 (635)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT----
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHH----
Confidence            3456678888888888877666777777899999999999875543 333 7889999999999997 66665443    


Q ss_pred             CCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcC-CccccCC-CCccEE
Q 014826          309 SDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKAL-PDHIHQT-TTLKRL  386 (418)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~-~~L~~L  386 (418)
                                  +..+++|++|+++++ +++.++...       +..+++|+.|++++| .++.+ |..+..+ ++|+.|
T Consensus       514 ------------f~~l~~L~~L~Ls~N-~l~~l~~~~-------~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          514 ------------FNSLSSLQVLNMSHN-NFFSLDTFP-------YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFL  572 (635)
T ss_dssp             ------------TTTCTTCCEEECTTS-CCCBCCCGG-------GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEE
T ss_pred             ------------HcCCCCCCEEECCCC-cCCCCChhH-------HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEE
Confidence                        447899999999984 677665432       247899999999999 56655 4566666 689999


Q ss_pred             EeccCCchhcccCCCCCCCC
Q 014826          387 WILNCGPLGERYRTGEGEDW  406 (418)
Q Consensus       387 ~l~~c~~l~~~~~~~~~~~~  406 (418)
                      ++++||.. +.|.-.+...|
T Consensus       573 ~L~~Np~~-C~C~~~~~~~w  591 (635)
T 4g8a_A          573 NLTQNDFA-CTCEHQSFLQW  591 (635)
T ss_dssp             ECTTCCBC-CSGGGHHHHHH
T ss_pred             EeeCCCCc-ccCCcHHHHHH
Confidence            99999954 44543333333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=5.3e-24  Score=196.93  Aligned_cols=294  Identities=19%  Similarity=0.145  Sum_probs=166.6

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCC
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNL   97 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L   97 (418)
                      +++.++++++.     ++.  +|..+  .++|++|++++|.+.+..+..+.++++|++|++++|.++.+ |..+..+++|
T Consensus        34 ~l~~l~~~~~~-----l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSDLG-----LKA--VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             ETTEEECCSSC-----CSS--CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             cCCEEECCCCC-----ccc--cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            78889888887     443  33222  46889999998886555556788889999999999888866 5678889999


Q ss_pred             cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccc
Q 014826           98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQ  177 (418)
Q Consensus        98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  177 (418)
                      ++|++++|. +..+|..+.  ++|++|++++|.+....+..+..+++|++|++.++....     .......+..+    
T Consensus       105 ~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~l----  172 (332)
T 2ft3_A          105 QKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-----SGFEPGAFDGL----  172 (332)
T ss_dssp             CEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-----GGSCTTSSCSC----
T ss_pred             CEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-----CCCCcccccCC----
Confidence            999999888 556776554  789999998886554444557888889988887765431     00111222222    


Q ss_pred             cccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhh
Q 014826          178 VCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWM  257 (418)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  257 (418)
                                               +|+.|++++|....            ++..+  .++|++|++++|.+....+..+
T Consensus       173 -------------------------~L~~L~l~~n~l~~------------l~~~~--~~~L~~L~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          173 -------------------------KLNYLRISEAKLTG------------IPKDL--PETLNELHLDHNKIQAIELEDL  213 (332)
T ss_dssp             -------------------------CCSCCBCCSSBCSS------------CCSSS--CSSCSCCBCCSSCCCCCCTTSS
T ss_pred             -------------------------ccCEEECcCCCCCc------------cCccc--cCCCCEEECCCCcCCccCHHHh
Confidence                                     34444444433210            11111  1345555555554444444444


Q ss_pred             hcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccccc
Q 014826          258 TSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLM  336 (418)
Q Consensus       258 ~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  336 (418)
                      ..+++|+.|++++|.+.+..+. +..+++|+.|++++|. ++.++..                 +..+++|+.|++++ .
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-----------------l~~l~~L~~L~l~~-N  274 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG-----------------LPDLKLLQVVYLHT-N  274 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT-----------------GGGCTTCCEEECCS-S
T ss_pred             cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh-----------------hhcCccCCEEECCC-C
Confidence            5555555555555544443332 4445555555555554 3333322                 23455555555555 2


Q ss_pred             ccccccccccccCCcccccCCCccEEEEecCCCC--CcCCccccCCCCccEEEeccCC
Q 014826          337 ELEEWDYGITRTGNTVINIMPHLSSLVIDSCYEL--KALPDHIHQTTTLKRLWILNCG  392 (418)
Q Consensus       337 ~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~~~~~~L~~L~l~~c~  392 (418)
                      .++.++.... .+......+++|++|++.+++..  ...+..+..+++|+.+++++|+
T Consensus       275 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          275 NITKVGVNDF-CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCCBCCTTSS-SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCccChhHc-cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            3444332211 00000012466777777777533  1223455667777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=1.9e-25  Score=216.25  Aligned_cols=349  Identities=17%  Similarity=0.084  Sum_probs=229.1

Q ss_pred             cccccceeeEEeecCCCCCCCCccHH---HHHHHhccCCCccEEecCCCCCcHHHHHhh-cccc----ccceeeeCCCCC
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAE---IVEELFRESTSLRALDVSQVSLPTEILRNI-KKLV----HLRYLNLRFPKI   84 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~l   84 (418)
                      .+..+++|++|++++|.     +++.   .++..+..+++|++|++++|.+.+..+..+ ..++    +|++|++++|.+
T Consensus        23 ~~~~~~~L~~L~L~~~~-----l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i   97 (461)
T 1z7x_W           23 LLPLLQQCQVVRLDDCG-----LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL   97 (461)
T ss_dssp             HHHHHTTCSEEEEESSC-----CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred             HHhhcCCccEEEccCCC-----CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence            36788999999999998     5542   466778888999999999998665544333 3455    699999999987


Q ss_pred             c-----cCchhhhcCCCCcEEeccCccCcccCChhhh-----ccccccEEeccCCccccc----CCcccccccccceecc
Q 014826           85 V-----KLPETLCELYNLEKLDISYCFNLKELPEGIG-----KLINMKHLLNRGTNSLRY----MPVGIGRLTGLRTLGE  150 (418)
Q Consensus        85 ~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l  150 (418)
                      +     .++..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+...    ++..+..+++|++|++
T Consensus        98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  177 (461)
T 1z7x_W           98 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV  177 (461)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence            7     4567788899999999999985443333332     246799999999865543    3556677889999999


Q ss_pred             eeecCCCCCCCcccccccccc-CCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhh
Q 014826          151 FRVSAGGDVDGRKACRLESLK-NLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLL  229 (418)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~l~-~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  229 (418)
                      .++......   .......+. ..++|+.+++..+.............+..+++|++|++++|....       .....+
T Consensus       178 ~~n~i~~~~---~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-------~~~~~l  247 (461)
T 1z7x_W          178 SNNDINEAG---VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD-------VGMAEL  247 (461)
T ss_dssp             CSSBCHHHH---HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH-------HHHHHH
T ss_pred             cCCCcchHH---HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh-------HHHHHH
Confidence            877643100   001111111 244666666665543322222334455678899999999887420       000112


Q ss_pred             hh-hCCCCCCCcEEEEeeecCCCC----CchhhhcCCCccEEEeeCCCCCCCCCC------CCCCCccchhcccccccce
Q 014826          230 LE-ALRPPLDLKELEIQFNRGNTV----FPSWMTSLTNLKSLGLSLCENCEQLPP------LGKLPSLEQLFISYMSSVK  298 (418)
Q Consensus       230 ~~-~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~------l~~l~~L~~L~L~~~~~~~  298 (418)
                      .. ....+++|++|++++|.+...    ++..+..+++|+.|++++|.+.+..+.      ....++|+.|++++|. ++
T Consensus       248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~  326 (461)
T 1z7x_W          248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FT  326 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CB
T ss_pred             HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-Cc
Confidence            22 234578999999999976654    456666799999999999976432111      2234689999999987 43


Q ss_pred             eccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCccc-ccCCCccEEEEecCCCCC-----c
Q 014826          299 RVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVI-NIMPHLSSLVIDSCYELK-----A  372 (418)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~-----~  372 (418)
                      ..+...++.            .+..+++|++|+++++ .+.+......  . ..+ ...++|++|++++| .++     .
T Consensus       327 ~~~~~~l~~------------~l~~~~~L~~L~Ls~n-~i~~~~~~~l--~-~~l~~~~~~L~~L~L~~n-~i~~~~~~~  389 (461)
T 1z7x_W          327 AACCSHFSS------------VLAQNRFLLELQISNN-RLEDAGVREL--C-QGLGQPGSVLRVLWLADC-DVSDSSCSS  389 (461)
T ss_dssp             GGGHHHHHH------------HHHHCSSCCEEECCSS-BCHHHHHHHH--H-HHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred             hHHHHHHHH------------HHhhCCCccEEEccCC-ccccccHHHH--H-HHHcCCCCceEEEECCCC-CCChhhHHH
Confidence            322111111            0446799999999986 5555432211  0 000 12679999999999 565     5


Q ss_pred             CCccccCCCCccEEEeccCCch
Q 014826          373 LPDHIHQTTTLKRLWILNCGPL  394 (418)
Q Consensus       373 ~~~~~~~~~~L~~L~l~~c~~l  394 (418)
                      ++..+..+++|++|++++|+.-
T Consensus       390 l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          390 LAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHHhCCCccEEECCCCCCC
Confidence            6666677999999999999743

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=1.2e-23  Score=194.33  Aligned_cols=294  Identities=19%  Similarity=0.169  Sum_probs=159.3

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCC
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNL   97 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L   97 (418)
                      +++.++++++.     ++.  +|.  .-.+.|++|+++++.+.+..+..+.++++|++|++++|.++.+ |..+..+++|
T Consensus        32 ~l~~l~~~~~~-----l~~--lp~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           32 HLRVVQCSDLG-----LEK--VPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             ETTEEECTTSC-----CCS--CCC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCeEEEecCCC-----ccc--cCc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            77888887776     333  332  1235788888888875544444677788888888888887766 5677788888


Q ss_pred             cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccc
Q 014826           98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQ  177 (418)
Q Consensus        98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  177 (418)
                      ++|++++|. +..+|..+.  ++|++|++++|.+....+..+.++++|++|++.++....     .......+       
T Consensus       103 ~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~-------  167 (330)
T 1xku_A          103 ERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAF-------  167 (330)
T ss_dssp             CEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGG-------
T ss_pred             CEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-----cCcChhhc-------
Confidence            888888877 556665443  678888888875555455557777888888776665431     00111122       


Q ss_pred             cccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhh
Q 014826          178 VCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWM  257 (418)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  257 (418)
                                           ..+++|+.|++++|....            ++..+  .++|++|++++|.+....+..+
T Consensus       168 ---------------------~~l~~L~~L~l~~n~l~~------------l~~~~--~~~L~~L~l~~n~l~~~~~~~~  212 (330)
T 1xku_A          168 ---------------------QGMKKLSYIRIADTNITT------------IPQGL--PPSLTELHLDGNKITKVDAASL  212 (330)
T ss_dssp             ---------------------GGCTTCCEEECCSSCCCS------------CCSSC--CTTCSEEECTTSCCCEECTGGG
T ss_pred             ---------------------cCCCCcCEEECCCCcccc------------CCccc--cccCCEEECCCCcCCccCHHHh
Confidence                                 233445555554443320            11111  1455555555554444444455


Q ss_pred             hcCCCccEEEeeCCCCCCCCC-CCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccccc
Q 014826          258 TSLTNLKSLGLSLCENCEQLP-PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLM  336 (418)
Q Consensus       258 ~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  336 (418)
                      ..+++|+.|++++|.+.+..+ .+..+++|+.|++++|. +..++..                 +..+++|++|+++++ 
T Consensus       213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-----------------l~~l~~L~~L~l~~N-  273 (330)
T 1xku_A          213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG-----------------LADHKYIQVVYLHNN-  273 (330)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT-----------------TTTCSSCCEEECCSS-
T ss_pred             cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh-----------------hccCCCcCEEECCCC-
Confidence            555555555555555444333 24455555555555554 3333322                 224455555555552 


Q ss_pred             ccccccccccccCCcccccCCCccEEEEecCCCCC-cC-CccccCCCCccEEEeccC
Q 014826          337 ELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELK-AL-PDHIHQTTTLKRLWILNC  391 (418)
Q Consensus       337 ~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~-~~~~~~~~~L~~L~l~~c  391 (418)
                      .++.++.... .+.......+.|+.+++.+++... .+ |..+..+++++.+++++|
T Consensus       274 ~i~~~~~~~f-~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          274 NISAIGSNDF-CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCCCCCTTSS-SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCCccChhhc-CCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            3443332211 000001124566777777765321 22 234555677777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=2.5e-24  Score=214.93  Aligned_cols=326  Identities=14%  Similarity=0.151  Sum_probs=178.9

Q ss_pred             eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc-----cCchh
Q 014826           20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV-----KLPET   90 (418)
Q Consensus        20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~l~~~   90 (418)
                      |++|+|++|.    .+....++..+..+++|++|++++|.+.+.    ++..+..+++|++|+++++.++     .++..
T Consensus       140 L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~  215 (592)
T 3ogk_B          140 LETLKLDKCS----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI  215 (592)
T ss_dssp             CCEEEEESCE----EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH
T ss_pred             CcEEECcCCC----CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH
Confidence            7777777665    455555666566677777777777654322    4444455666777777666654     23344


Q ss_pred             hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCc--------------------------ccccCCcccccccc
Q 014826           91 LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTN--------------------------SLRYMPVGIGRLTG  144 (418)
Q Consensus        91 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------------------------~~~~~~~~l~~l~~  144 (418)
                      +..+++|+.|++++|. ...++..++.+++|++|+++...                          ....+|..+..+++
T Consensus       216 ~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~  294 (592)
T 3ogk_B          216 ARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ  294 (592)
T ss_dssp             HHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGG
T ss_pred             HhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCC
Confidence            5566667777766665 33355555556666666654321                          22334444555566


Q ss_pred             cceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeec----------ccc
Q 014826          145 LRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRF----------DKK  214 (418)
Q Consensus       145 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~  214 (418)
                      |++|++.++...      .......+..+++|+.+++..  .+.+  .........+++|++|++.+          +..
T Consensus       295 L~~L~Ls~~~l~------~~~~~~~~~~~~~L~~L~L~~--~~~~--~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~  364 (592)
T 3ogk_B          295 IRKLDLLYALLE------TEDHCTLIQKCPNLEVLETRN--VIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL  364 (592)
T ss_dssp             CCEEEETTCCCC------HHHHHHHHTTCTTCCEEEEEG--GGHH--HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred             CcEEecCCCcCC------HHHHHHHHHhCcCCCEEeccC--ccCH--HHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence            666666555422      111111123344444444331  1111  11222234466777777773          211


Q ss_pred             cCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCC---CCCCCCC-------CCCC
Q 014826          215 KEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCE---NCEQLPP-------LGKL  283 (418)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~---~~~~~~~-------l~~l  283 (418)
                      .         ....+......+++|++|+++.+.+.+..+..++ .+++|+.|+++++.   .....|.       +..+
T Consensus       365 ~---------~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~  435 (592)
T 3ogk_B          365 V---------SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC  435 (592)
T ss_dssp             C---------CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred             c---------CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence            1         2222333344567788887766656555555555 37788888886332   2222211       3457


Q ss_pred             Cccchhccccccc-ceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEE
Q 014826          284 PSLEQLFISYMSS-VKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSL  362 (418)
Q Consensus       284 ~~L~~L~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L  362 (418)
                      ++|+.|++++|.. +.......+               ...+++|++|++++|. +++......      +..+++|++|
T Consensus       436 ~~L~~L~L~~~~~~l~~~~~~~~---------------~~~~~~L~~L~L~~n~-l~~~~~~~~------~~~~~~L~~L  493 (592)
T 3ogk_B          436 KKLRRFAFYLRQGGLTDLGLSYI---------------GQYSPNVRWMLLGYVG-ESDEGLMEF------SRGCPNLQKL  493 (592)
T ss_dssp             TTCCEEEEECCGGGCCHHHHHHH---------------HHSCTTCCEEEECSCC-SSHHHHHHH------HTCCTTCCEE
T ss_pred             CCCCEEEEecCCCCccHHHHHHH---------------HHhCccceEeeccCCC-CCHHHHHHH------HhcCcccCee
Confidence            7788888876542 111111110               2247888888888753 443222111      2368999999


Q ss_pred             EEecCCCCCc--CCccccCCCCccEEEeccCC
Q 014826          363 VIDSCYELKA--LPDHIHQTTTLKRLWILNCG  392 (418)
Q Consensus       363 ~l~~c~~l~~--~~~~~~~~~~L~~L~l~~c~  392 (418)
                      ++++|+ +++  ++.....+++|++|++++|+
T Consensus       494 ~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          494 EMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             EEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             eccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            999996 543  34445568999999999999

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=1e-22  Score=187.62  Aligned_cols=233  Identities=20%  Similarity=0.234  Sum_probs=168.5

Q ss_pred             ccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecc
Q 014826           71 LVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGE  150 (418)
Q Consensus        71 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  150 (418)
                      ..++++|+++++.++.+|..+..+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            47889999999998888888888999999999998844 88888889999999999998554 78888888999999988


Q ss_pred             eeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhh
Q 014826          151 FRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLL  230 (418)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  230 (418)
                      .+|......+       ..+..                                  ..                    ..
T Consensus       158 ~~n~~~~~~p-------~~~~~----------------------------------~~--------------------~~  176 (328)
T 4fcg_A          158 RACPELTELP-------EPLAS----------------------------------TD--------------------AS  176 (328)
T ss_dssp             EEETTCCCCC-------SCSEE----------------------------------EC---------------------C
T ss_pred             CCCCCccccC-------hhHhh----------------------------------cc--------------------ch
Confidence            8876542111       00000                                  00                    01


Q ss_pred             hhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCC
Q 014826          231 EALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESD  310 (418)
Q Consensus       231 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~  310 (418)
                      ..+..+++|++|++++|.+. .+|.++..+++|+.|++++|.+.+..+.+..+++|+.|++++|...+.++..       
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-------  248 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-------  248 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-------
T ss_pred             hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-------
Confidence            11233566777777777554 6666777777777777777776654444667777777777777755544432       


Q ss_pred             ccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEecc
Q 014826          311 RHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILN  390 (418)
Q Consensus       311 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~  390 (418)
                                +..+++|+.|++++|..+..++....        .+++|++|++++|+.+..+|..+.++++|+.+.+..
T Consensus       249 ----------~~~l~~L~~L~L~~n~~~~~~p~~~~--------~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          249 ----------FGGRAPLKRLILKDCSNLLTLPLDIH--------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             ----------TTCCCCCCEEECTTCTTCCBCCTTGG--------GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             ----------hcCCCCCCEEECCCCCchhhcchhhh--------cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence                      34677888888888777776665544        788899999999888888888888889999888875


Q ss_pred             CC
Q 014826          391 CG  392 (418)
Q Consensus       391 c~  392 (418)
                      +.
T Consensus       311 ~~  312 (328)
T 4fcg_A          311 HL  312 (328)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.8e-24  Score=196.97  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=84.8

Q ss_pred             CCccEEecCCCCCcH--HHHHhhccccccceeeeCC-CCCc-cCchhhhcCCCCcEEeccCccCcccCChhhhccccccE
Q 014826           48 TSLRALDVSQVSLPT--EILRNIKKLVHLRYLNLRF-PKIV-KLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKH  123 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  123 (418)
                      .++++|+++++.+.+  .+|..+.++++|++|++++ +.+. .+|..+..+++|++|++++|.+.+.+|..++++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            578888888888666  6777788888888888884 6655 67777888888888888888866677878888888888


Q ss_pred             EeccCCcccccCCcccccccccceecceeecC
Q 014826          124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus       124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      |++++|.+.+.+|..+..+++|++|++.+|..
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence            88888876667787888888888887766654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=5.5e-23  Score=190.10  Aligned_cols=283  Identities=16%  Similarity=0.157  Sum_probs=197.1

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  ++|++|++++|.     ++. ..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus        46 ~~ip~~~~--~~l~~L~l~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l  117 (332)
T 2ft3_A           46 KAVPKEIS--PDTTLLDLQNND-----ISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI  117 (332)
T ss_dssp             SSCCSCCC--TTCCEEECCSSC-----CCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC
T ss_pred             cccCCCCC--CCCeEEECCCCc-----CCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc
Confidence            45676654  699999999998     444 2344589999999999999997766678899999999999999999998


Q ss_pred             chhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEeccCCcccc--cCCcccccccccceecceeecCCCCCCCccc
Q 014826           88 PETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFRVSAGGDVDGRKA  164 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  164 (418)
                      |..+.  ++|++|++++|.+ ..++ ..++++++|++|++++|....  ..+..+..+ +|+.|++.++....       
T Consensus       118 ~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-------  186 (332)
T 2ft3_A          118 PPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-------  186 (332)
T ss_dssp             CSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-------
T ss_pred             Ccccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-------
Confidence            86654  8999999999994 4554 458999999999999996642  556677777 89999887766441       


Q ss_pred             cccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEE
Q 014826          165 CRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEI  244 (418)
Q Consensus       165 ~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  244 (418)
                       ....+                              .++|++|++++|...           ...+..+..+++|++|++
T Consensus       187 -l~~~~------------------------------~~~L~~L~l~~n~i~-----------~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          187 -IPKDL------------------------------PETLNELHLDHNKIQ-----------AIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             -CCSSS------------------------------CSSCSCCBCCSSCCC-----------CCCTTSSTTCTTCSCCBC
T ss_pred             -cCccc------------------------------cCCCCEEECCCCcCC-----------ccCHHHhcCCCCCCEEEC
Confidence             00000                              145666777666542           112345666788888888


Q ss_pred             eeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccC
Q 014826          245 QFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAF  324 (418)
Q Consensus       245 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (418)
                      ++|.+....+.++..+++|+.|++++|.+......+..+++|+.|++++|. ++.++...+.....          ...+
T Consensus       225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~----------~~~~  293 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGF----------GVKR  293 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSC----------CSSS
T ss_pred             CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHcccccc----------cccc
Confidence            888776666667788888888888888776333337778888888888887 66666554432100          1235


Q ss_pred             CcccccccccccccccccccccccCCcccccCCCccEEEEecCC
Q 014826          325 PKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCY  368 (418)
Q Consensus       325 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~  368 (418)
                      ++|+.+++.+++ +..+...     ......+++|+.+++.+|.
T Consensus       294 ~~l~~L~l~~N~-~~~~~~~-----~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          294 AYYNGISLFNNP-VPYWEVQ-----PATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBSEEECCSSS-SCGGGSC-----GGGGTTBCCSTTEEC----
T ss_pred             ccccceEeecCc-ccccccC-----cccccccchhhhhhccccc
Confidence            778888888754 3322111     1122367888888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=1.1e-22  Score=188.04  Aligned_cols=284  Identities=13%  Similarity=0.089  Sum_probs=206.0

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      ..+|..+.  ++|++|++++|.     +++ ..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.++.+
T Consensus        44 ~~lp~~~~--~~l~~L~L~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  115 (330)
T 1xku_A           44 EKVPKDLP--PDTALLDLQNNK-----ITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL  115 (330)
T ss_dssp             CSCCCSCC--TTCCEEECCSSC-----CCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC
T ss_pred             cccCccCC--CCCeEEECCCCc-----CCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc
Confidence            45666554  689999999998     444 2233588999999999999997766678899999999999999999988


Q ss_pred             chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccc--cCCcccccccccceecceeecCCCCCCCcccc
Q 014826           88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR--YMPVGIGRLTGLRTLGEFRVSAGGDVDGRKAC  165 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  165 (418)
                      |..+.  ++|++|++++|.+....+..++++++|++|++++|....  ..+..+.++++|+.|++.++....        
T Consensus       116 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--------  185 (330)
T 1xku_A          116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--------  185 (330)
T ss_dssp             CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--------
T ss_pred             Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--------
Confidence            86554  799999999999554445568999999999999996643  566778899999999987765431        


Q ss_pred             ccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEe
Q 014826          166 RLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQ  245 (418)
Q Consensus       166 ~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  245 (418)
                          ++.                        .  ..++|+.|++++|...           ...+..+..+++|++|+++
T Consensus       186 ----l~~------------------------~--~~~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~Ls  224 (330)
T 1xku_A          186 ----IPQ------------------------G--LPPSLTELHLDGNKIT-----------KVDAASLKGLNNLAKLGLS  224 (330)
T ss_dssp             ----CCS------------------------S--CCTTCSEEECTTSCCC-----------EECTGGGTTCTTCCEEECC
T ss_pred             ----CCc------------------------c--ccccCCEEECCCCcCC-----------ccCHHHhcCCCCCCEEECC
Confidence                000                        0  0146778888777642           2224566778899999999


Q ss_pred             eecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCC
Q 014826          246 FNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFP  325 (418)
Q Consensus       246 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (418)
                      +|.+....+.++..+++|+.|++++|.+......+..+++|+.|++++|. ++.++...+.....          ....+
T Consensus       225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~----------~~~~~  293 (330)
T 1xku_A          225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGY----------NTKKA  293 (330)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSC----------CTTSC
T ss_pred             CCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCccc----------ccccc
Confidence            99777666667888999999999999877443348889999999999988 77776655432100          12357


Q ss_pred             cccccccccccccccccccccccCCcccccCCCccEEEEecC
Q 014826          326 KLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSC  367 (418)
Q Consensus       326 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c  367 (418)
                      .++.+++.+.+ +..+...     ......+++++.+++++|
T Consensus       294 ~l~~l~l~~N~-~~~~~i~-----~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          294 SYSGVSLFSNP-VQYWEIQ-----PSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCSEEECCSSS-SCGGGSC-----GGGGTTCCCGGGEEC---
T ss_pred             cccceEeecCc-ccccccC-----ccccccccceeEEEeccc
Confidence            78888888743 3333221     122335678888888876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1.6e-23  Score=192.97  Aligned_cols=223  Identities=23%  Similarity=0.277  Sum_probs=136.8

Q ss_pred             CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826           47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN  126 (418)
Q Consensus        47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  126 (418)
                      ...+++|+++++.+. .+|..+.++++|++|++++|.+..+|..+..+++|++|++++|. +..+|..++++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence            356666666666533 45555555666666666666666666656666666666666665 3355666666666666666


Q ss_pred             cCCcccccCCccccc---------ccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhh
Q 014826          127 RGTNSLRYMPVGIGR---------LTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLE  197 (418)
Q Consensus       127 ~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~  197 (418)
                      ++|...+.+|..+..         +++|++|++.+|...        .....+..+++|+.+++...... ..    ...
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~N~l~-~l----~~~  224 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNLKSLKIRNSPLS-AL----GPA  224 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTCCEEEEESSCCC-CC----CGG
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCCCEEEccCCCCC-cC----chh
Confidence            665555555555433         666666666655433        11122333333444333322111 00    012


Q ss_pred             cCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCC
Q 014826          198 LDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQL  277 (418)
Q Consensus       198 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  277 (418)
                      +..+++|+.|++++|...           ...+..+..+++|++|++++|.....+|.++..+++|+.|++++|...+.+
T Consensus       225 l~~l~~L~~L~Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTAL-----------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             GGGCTTCCEEECTTCTTC-----------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             hccCCCCCEEECcCCcch-----------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            445677888888776632           234556677788888888888777778888888888888888888888877


Q ss_pred             CC-CCCCCccchhcccccc
Q 014826          278 PP-LGKLPSLEQLFISYMS  295 (418)
Q Consensus       278 ~~-l~~l~~L~~L~L~~~~  295 (418)
                      |. ++.+++|+.+++..+.
T Consensus       294 P~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          294 PSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             CGGGGGSCTTCEEECCGGG
T ss_pred             cHHHhhccCceEEeCCHHH
Confidence            76 7778888877776543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=6.5e-22  Score=198.92  Aligned_cols=139  Identities=24%  Similarity=0.162  Sum_probs=106.7

Q ss_pred             CCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc
Q 014826            9 SLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP   88 (418)
Q Consensus         9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~   88 (418)
                      ++|..+.  +++++|+|++|.     ++. +.+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.++.+|
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~-----i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNP-----LRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             ccCCCCC--cCCCEEEeeCCC-----CCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence            4665554  378999999988     554 22345888999999999999865544566888999999999999988877


Q ss_pred             -hhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCC
Q 014826           89 -ETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        89 -~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                       ..|.++++|++|++++|. +..++ ..++++++|++|++++|.+.. ..|..+..+++|++|++.++...
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             HHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence             457889999999999988 44454 458889999999999886543 35777888889999888776543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=1.3e-22  Score=202.41  Aligned_cols=333  Identities=12%  Similarity=0.088  Sum_probs=190.2

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCC-ccEEecCCCC-CcH-HHHHhhccccccceeeeCCCCCcc-----C
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTS-LRALDVSQVS-LPT-EILRNIKKLVHLRYLNLRFPKIVK-----L   87 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~l~~-----l   87 (418)
                      .+++|++|+|++|.     +++..+..+...++. |++|++++|. +.. .++..+.++++|++|++++|.++.     +
T Consensus       110 ~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l  184 (592)
T 3ogk_B          110 NLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL  184 (592)
T ss_dssp             HCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred             hCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence            89999999999997     676555543333555 9999999886 222 344555789999999999998653     4


Q ss_pred             chhhhcCCCCcEEeccCccCc----ccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcc
Q 014826           88 PETLCELYNLEKLDISYCFNL----KELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRK  163 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  163 (418)
                      +.....+++|++|+++++...    ..++..+.++++|+.|++++|.. ..++..+.++++|+.|++........    .
T Consensus       185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~----~  259 (592)
T 3ogk_B          185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIG----M  259 (592)
T ss_dssp             HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTT----C
T ss_pred             HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccc----h
Confidence            455678999999999999854    23455567899999999999854 44777788899999998864322100    1


Q ss_pred             ccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEE
Q 014826          164 ACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELE  243 (418)
Q Consensus       164 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  243 (418)
                      ......+..+++|+.+++.....     ......+..+++|++|++++|..          ........+..+++|++|+
T Consensus       260 ~~~~~~l~~~~~L~~L~l~~~~~-----~~l~~~~~~~~~L~~L~Ls~~~l----------~~~~~~~~~~~~~~L~~L~  324 (592)
T 3ogk_B          260 PEKYMNLVFPRKLCRLGLSYMGP-----NEMPILFPFAAQIRKLDLLYALL----------ETEDHCTLIQKCPNLEVLE  324 (592)
T ss_dssp             TTSSSCCCCCTTCCEEEETTCCT-----TTGGGGGGGGGGCCEEEETTCCC----------CHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHhhccccccccCccccch-----hHHHHHHhhcCCCcEEecCCCcC----------CHHHHHHHHHhCcCCCEEe
Confidence            11222333344444443332110     01111233445566666655542          2222223344455555555


Q ss_pred             EeeecCCCC-CchhhhcCCCccEEEee------------------------------------CCCCCCCCCC-CC-CCC
Q 014826          244 IQFNRGNTV-FPSWMTSLTNLKSLGLS------------------------------------LCENCEQLPP-LG-KLP  284 (418)
Q Consensus       244 l~~~~~~~~-~~~~l~~~~~L~~L~l~------------------------------------~~~~~~~~~~-l~-~l~  284 (418)
                      ++.+ ..+. ++.....+++|+.|++.                                    .+.+.+.... +. .++
T Consensus       325 L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  403 (592)
T 3ogk_B          325 TRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK  403 (592)
T ss_dssp             EEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC
T ss_pred             ccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC
Confidence            5522 2221 22222345555555555                                    3322221111 11 144


Q ss_pred             ccchhccccc---ccceeccccccCCCCCccCCCCCccccccCCcccccccccccc-cccccccccccCCcccccCCCcc
Q 014826          285 SLEQLFISYM---SSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLME-LEEWDYGITRTGNTVINIMPHLS  360 (418)
Q Consensus       285 ~L~~L~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~~~~~L~  360 (418)
                      +|+.|++.++   ..++..+.+.           ........+++|+.|++++|.+ +.+......      ...+++|+
T Consensus       404 ~L~~L~l~~~~~~n~l~~~p~~~-----------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~------~~~~~~L~  466 (592)
T 3ogk_B          404 NLCDFRLVLLDREERITDLPLDN-----------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------GQYSPNVR  466 (592)
T ss_dssp             SCCEEEEEECSCCSCCSSCCCHH-----------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH------HHSCTTCC
T ss_pred             CCcEEEEeecCCCccccCchHHH-----------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH------HHhCccce
Confidence            4555555421   1122111000           0000033577788888776553 332222111      12488999


Q ss_pred             EEEEecCCCCCc--CCccccCCCCccEEEeccCC
Q 014826          361 SLVIDSCYELKA--LPDHIHQTTTLKRLWILNCG  392 (418)
Q Consensus       361 ~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~c~  392 (418)
                      +|++.+| .+++  ++..+..+++|++|+|++|+
T Consensus       467 ~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          467 WMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             EEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             EeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC
Confidence            9999988 4543  34455679999999999998

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=2.4e-23  Score=201.47  Aligned_cols=346  Identities=16%  Similarity=0.069  Sum_probs=232.9

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCC----CccEEecCCCCCcH----HHHHhhccccccceeeeCC
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFREST----SLRALDVSQVSLPT----EILRNIKKLVHLRYLNLRF   81 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~   81 (418)
                      ++..+..+++|++|++++|.     +++.....++..++    +|++|++++|.+.+    .++..+..+++|++|++++
T Consensus        48 l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~  122 (461)
T 1z7x_W           48 ISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD  122 (461)
T ss_dssp             HHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             HHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC
Confidence            56678889999999999998     77766666666666    79999999999763    5788899999999999999


Q ss_pred             CCCccC-chhh-----hcCCCCcEEeccCccCccc----CChhhhccccccEEeccCCcccccCCcccc-----cccccc
Q 014826           82 PKIVKL-PETL-----CELYNLEKLDISYCFNLKE----LPEGIGKLINMKHLLNRGTNSLRYMPVGIG-----RLTGLR  146 (418)
Q Consensus        82 ~~l~~l-~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~  146 (418)
                      |.++.. +..+     ...++|++|++++|.+...    ++..+..+++|++|++++|.+....+..+.     ..++|+
T Consensus       123 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~  202 (461)
T 1z7x_W          123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE  202 (461)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred             CcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence            997632 2222     2356899999999985543    355677889999999999965544333332     356999


Q ss_pred             eecceeecCCCCCCCccccccccccCCcccccccccccCCCcchh-hhh-hhhcCCcccccceEeecccccCCCCCcccc
Q 014826          147 TLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVG-EAK-RLELDKKKYLSCLRLRFDKKKEGGERRKNE  224 (418)
Q Consensus       147 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~-~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  224 (418)
                      +|++.+|......   .......+..+++|+.+++.... +...+ ... ......+++|+.|++++|....       .
T Consensus       203 ~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~-------~  271 (461)
T 1z7x_W          203 ALKLESCGVTSDN---CRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITA-------K  271 (461)
T ss_dssp             EEECTTSCCBTTH---HHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-------H
T ss_pred             EEEccCCCCcHHH---HHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCH-------H
Confidence            9999888654210   01123344556677777666543 22211 111 1223357899999999997531       0


Q ss_pred             chhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh-----cCCCccEEEeeCCCCCCCC----CC-CCCCCccchhccccc
Q 014826          225 DDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT-----SLTNLKSLGLSLCENCEQL----PP-LGKLPSLEQLFISYM  294 (418)
Q Consensus       225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~----~~-l~~l~~L~~L~L~~~  294 (418)
                      ....+...+..+++|++|++++|.+.+..+..+.     ..++|+.|++++|.+.+..    +. +..+++|+.|++++|
T Consensus       272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence            1122456667789999999999976554444443     3479999999999876542    22 556799999999999


Q ss_pred             ccceeccccccCCCCCccCCCCCccccccCCcccccccccccccc-----cccccccccCCcccccCCCccEEEEecCCC
Q 014826          295 SSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELE-----EWDYGITRTGNTVINIMPHLSSLVIDSCYE  369 (418)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~  369 (418)
                      . +...+...+....           ....++|++|++++| .++     .++....        .+++|++|++++| .
T Consensus       352 ~-i~~~~~~~l~~~l-----------~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~--------~~~~L~~L~l~~N-~  409 (461)
T 1z7x_W          352 R-LEDAGVRELCQGL-----------GQPGSVLRVLWLADC-DVSDSSCSSLAATLL--------ANHSLRELDLSNN-C  409 (461)
T ss_dssp             B-CHHHHHHHHHHHH-----------TSTTCCCCEEECTTS-CCCHHHHHHHHHHHH--------HCCCCCEEECCSS-S
T ss_pred             c-cccccHHHHHHHH-----------cCCCCceEEEECCCC-CCChhhHHHHHHHHH--------hCCCccEEECCCC-C
Confidence            6 5443322111000           012679999999996 455     3333333        6899999999999 4


Q ss_pred             CCcCCc-----cc-cCCCCccEEEeccCCc
Q 014826          370 LKALPD-----HI-HQTTTLKRLWILNCGP  393 (418)
Q Consensus       370 l~~~~~-----~~-~~~~~L~~L~l~~c~~  393 (418)
                      +++...     .+ ....+|+.|++.++..
T Consensus       410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          410 LGDAGILQLVESVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             CCHHHHHHHHHHhccCCcchhheeeccccc
Confidence            543211     11 1245788888877763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=181.18  Aligned_cols=259  Identities=17%  Similarity=0.150  Sum_probs=194.1

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  ++|++|++++|.     ++. ..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.++.+
T Consensus        44 ~~iP~~~~--~~L~~L~l~~n~-----i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           44 NSIPSGLT--EAVKSLDLSNNR-----ITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             SSCCTTCC--TTCCEEECTTSC-----CCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred             cccccccc--ccCcEEECCCCc-----Ccc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence            45776555  489999999998     454 2233588999999999999987665567789999999999999999988


Q ss_pred             chh-hhcCCCCcEEeccCccCcccCCh--hhhccccccEEeccCCccccc-CCcccccccccceecceeecCCCCCCCcc
Q 014826           88 PET-LCELYNLEKLDISYCFNLKELPE--GIGKLINMKHLLNRGTNSLRY-MPVGIGRLTGLRTLGEFRVSAGGDVDGRK  163 (418)
Q Consensus        88 ~~~-~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  163 (418)
                      +.. +..+++|++|++++|. +..+|.  .++++++|++|++++|..... .+..+.++++|++|++.++...       
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-------  187 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-------  187 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-------
T ss_pred             CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-------
Confidence            865 8899999999999998 556765  688999999999999854444 4567889999999999888764       


Q ss_pred             ccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEE
Q 014826          164 ACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELE  243 (418)
Q Consensus       164 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  243 (418)
                      ......+..+++|+.+++..... ...+..   .+..+++|+.|++++|......        ............++.++
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~---~~~~~~~L~~L~L~~n~l~~~~--------~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQH-ILLLEI---FVDVTSSVECLELRDTDLDTFH--------FSELSTGETNSLIKKFT  255 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCS-TTHHHH---HHHHTTTEEEEEEESCBCTTCC--------CC------CCCCCCEEE
T ss_pred             ccCHHHHhccccCCeecCCCCcc-ccchhh---hhhhcccccEEECCCCcccccc--------ccccccccccchhhccc
Confidence            22345566777777777665442 222222   2334689999999998764211        01112234467788999


Q ss_pred             EeeecCCCC----CchhhhcCCCccEEEeeCCCCCCCCCC--CCCCCccchhcccccc
Q 014826          244 IQFNRGNTV----FPSWMTSLTNLKSLGLSLCENCEQLPP--LGKLPSLEQLFISYMS  295 (418)
Q Consensus       244 l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~  295 (418)
                      +..+.+.+.    +|.++..+++|+.|++++|.+. .+|.  +..+++|+.|++++|+
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence            988866553    5677889999999999999887 4554  5889999999999997

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=9.4e-22  Score=177.80  Aligned_cols=207  Identities=15%  Similarity=0.068  Sum_probs=91.2

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcEEeccCccCcccC-ChhhhccccccEEe
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYCFNLKEL-PEGIGKLINMKHLL  125 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~  125 (418)
                      ++|++|+++++.+.+..+..+.++++|++|++++|.++.+ |..+..+++|++|++++|..+..+ +..++++++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            3455555555443332223344455555555555544433 334444555555555554422222 33444455555555


Q ss_pred             ccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccccc
Q 014826          126 NRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS  205 (418)
Q Consensus       126 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~  205 (418)
                      +++|.+....+..+.++++|++|++.++....       .....+..+++|+.+++..... ..   .....+..+++|+
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~l-~~---~~~~~~~~l~~L~  180 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------LPDDTFRDLGNLTHLFLHGNRI-SS---VPERAFRGLHSLD  180 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTTTTTTCTTCCEEECCSSCC-CE---ECTTTTTTCTTCC
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccc-------cCHhHhccCCCccEEECCCCcc-cc---cCHHHhcCccccC
Confidence            55543333334444445555555444433220       0000111122222221111100 00   0001123345666


Q ss_pred             ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCC
Q 014826          206 CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQ  276 (418)
Q Consensus       206 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  276 (418)
                      .|++++|...           ...+..+..+++|++|++++|.+....+..+..+++|+.|++++|++..+
T Consensus       181 ~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          181 RLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             EEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             EEECCCCccc-----------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            6666665532           12234455566666666666655544444566666666666666655443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=6.2e-22  Score=184.65  Aligned_cols=278  Identities=17%  Similarity=0.186  Sum_probs=156.8

Q ss_pred             cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhc
Q 014826           15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCE   93 (418)
Q Consensus        15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~   93 (418)
                      -.|+.....+.+++.     ++.  +|.  .-.++|++|+++++.+.+..+..+.++++|++|++++|.++.++ ..+.+
T Consensus        28 ~~C~~~~~c~~~~~~-----l~~--iP~--~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (353)
T 2z80_A           28 LSCDRNGICKGSSGS-----LNS--IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS   98 (353)
T ss_dssp             CEECTTSEEECCSTT-----CSS--CCT--TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CCCCCCeEeeCCCCC-----ccc--ccc--cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence            355555666666665     333  332  12246777777777754433345677777777777777776553 45677


Q ss_pred             CCCCcEEeccCccCcccCChh-hhccccccEEeccCCcccccCCc--ccccccccceecceeecCCCCCCCccccccccc
Q 014826           94 LYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRYMPV--GIGRLTGLRTLGEFRVSAGGDVDGRKACRLESL  170 (418)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  170 (418)
                      +++|++|++++|. +..++.. ++++++|++|++++|.+. .+|.  .+.++++|++|++.++....      .      
T Consensus        99 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~------~------  164 (353)
T 2z80_A           99 LGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT------K------  164 (353)
T ss_dssp             CTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC------E------
T ss_pred             CCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc------c------
Confidence            7777777777777 4445543 667777777777777433 3443  56667777777666553210      0      


Q ss_pred             cCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCC
Q 014826          171 KNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGN  250 (418)
Q Consensus       171 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  250 (418)
                                      +      ....+..+++|++|++++|...           ...+..+..+++|++|++++|.+ 
T Consensus       165 ----------------~------~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~l~~l~~L~~L~l~~n~l-  210 (353)
T 2z80_A          165 ----------------I------QRKDFAGLTFLEELEIDASDLQ-----------SYEPKSLKSIQNVSHLILHMKQH-  210 (353)
T ss_dssp             ----------------E------CTTTTTTCCEEEEEEEEETTCC-----------EECTTTTTTCSEEEEEEEECSCS-
T ss_pred             ----------------c------CHHHccCCCCCCEEECCCCCcC-----------ccCHHHHhccccCCeecCCCCcc-
Confidence                            0      0012334566777777766532           22244555666777777777644 


Q ss_pred             CCCchh-hhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccc
Q 014826          251 TVFPSW-MTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKS  329 (418)
Q Consensus       251 ~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  329 (418)
                      ..++.. +..+++|+.|++++|.+.+..+.                        .+..             ....+.++.
T Consensus       211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------------------------~l~~-------------~~~~~~l~~  253 (353)
T 2z80_A          211 ILLLEIFVDVTSSVECLELRDTDLDTFHFS------------------------ELST-------------GETNSLIKK  253 (353)
T ss_dssp             TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------------------------CCCCCCE
T ss_pred             ccchhhhhhhcccccEEECCCCcccccccc------------------------cccc-------------ccccchhhc
Confidence            233332 33566777777777655432211                        0000             011222333


Q ss_pred             cccccc----cccccccccccccCCcccccCCCccEEEEecCCCCCcCCcc-ccCCCCccEEEeccCCchh
Q 014826          330 LRIEGL----MELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDH-IHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       330 L~l~~~----~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~  395 (418)
                      ++++++    ..+..++...        ..+++|++|++++| .++.+|.. +..+++|++|++++|+..+
T Consensus       254 l~L~~~~l~~~~l~~l~~~l--------~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          254 FTFRNVKITDESLFQVMKLL--------NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             EEEESCBCCHHHHHHHHHHH--------HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccccccccCcchhhhHHHH--------hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            333321    1122232222        26788888888888 67777765 3678888888888887543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.2e-21  Score=176.18  Aligned_cols=234  Identities=21%  Similarity=0.185  Sum_probs=170.5

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH--HHHhhccccccceeeeCCCCCc
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE--ILRNIKKLVHLRYLNLRFPKIV   85 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~   85 (418)
                      .++|..+.  ++|++|++++|.     ++. +.+..|.++++|++|++++|.+...  .+..+..+++|++|++++|.+.
T Consensus        20 ~~ip~~~~--~~l~~L~L~~n~-----l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~   91 (306)
T 2z66_A           20 TSVPTGIP--SSATRLELESNK-----LQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI   91 (306)
T ss_dssp             SSCCSCCC--TTCCEEECCSSC-----CCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred             ccCCCCCC--CCCCEEECCCCc-----cCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence            45666554  588899999887     443 2234467888999999988875422  2344566888999999998888


Q ss_pred             cCchhhhcCCCCcEEeccCccCcccCC--hhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcc
Q 014826           86 KLPETLCELYNLEKLDISYCFNLKELP--EGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRK  163 (418)
Q Consensus        86 ~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  163 (418)
                      .+|..+..+++|++|++++|. +..++  ..+.++++|++|++++|......+..+..+++|++|++.++...      .
T Consensus        92 ~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~  164 (306)
T 2z66_A           92 TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ------E  164 (306)
T ss_dssp             EEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG------G
T ss_pred             cChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc------c
Confidence            888778888999999998888 44443  36788888999999888766667777888888888887766543      0


Q ss_pred             ccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEE
Q 014826          164 ACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELE  243 (418)
Q Consensus       164 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  243 (418)
                      .....                            .+..+++|+.|++++|...           ...+..+..+++|++|+
T Consensus       165 ~~~~~----------------------------~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          165 NFLPD----------------------------IFTELRNLTFLDLSQCQLE-----------QLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             GEECS----------------------------CCTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEE
T ss_pred             ccchh----------------------------HHhhCcCCCEEECCCCCcC-----------CcCHHHhcCCCCCCEEE
Confidence            00111                            2344567888888877642           22245667788999999


Q ss_pred             EeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCC-ccchhcccccc
Q 014826          244 IQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP-SLEQLFISYMS  295 (418)
Q Consensus       244 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~-~L~~L~L~~~~  295 (418)
                      +++|.+....+..+..+++|+.|++++|.+.+..+. +..++ +|+.|++++|+
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            999977666666778899999999999988776664 67774 89999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=7e-21  Score=183.54  Aligned_cols=224  Identities=16%  Similarity=0.120  Sum_probs=135.6

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEe
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLL  125 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~  125 (418)
                      ++|++|++++|.+.+..+..+.++++|++|++++|.+..++ ..+.++++|++|++++|. +..++ ..++.+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence            45666666666544444445556666666666666655443 445556666666666665 33333 2355566666666


Q ss_pred             ccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccccc
Q 014826          126 NRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS  205 (418)
Q Consensus       126 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~  205 (418)
                      +++|.+....+..+.++++|+.|++.++....      ......+..+++|+.+++..... ...     ..+..+++|+
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~l~~L~~L~L~~n~l-~~~-----~~~~~l~~L~  221 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLE------YISEGAFEGLFNLKYLNLGMCNI-KDM-----PNLTPLVGLE  221 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTTCTTCCEEECTTSCC-SSC-----CCCTTCTTCC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCcc------ccChhhccCCCCCCEEECCCCcc-ccc-----cccccccccc
Confidence            66664433333345556666666655543321      11112334444444444433221 111     0245567888


Q ss_pred             ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCC
Q 014826          206 CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP  284 (418)
Q Consensus       206 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~  284 (418)
                      .|++++|...           ...+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..++
T Consensus       222 ~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          222 ELEMSGNHFP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             EEECTTSCCS-----------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             EEECcCCcCc-----------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            8888888743           23355677888999999999987777777888899999999999987754444 67889


Q ss_pred             ccchhcccccc
Q 014826          285 SLEQLFISYMS  295 (418)
Q Consensus       285 ~L~~L~L~~~~  295 (418)
                      +|+.|++.+|+
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            99999999887

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=8.2e-21  Score=182.41  Aligned_cols=224  Identities=17%  Similarity=0.154  Sum_probs=132.3

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEe
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLL  125 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~  125 (418)
                      +++++|++++|.+.+..+..+.++++|++|++++|.+..++ ..+.++++|++|++++|. +..++. .+..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceee
Confidence            45555666555544333344555556666666655555443 345555566666666555 333332 355555666666


Q ss_pred             ccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccccc
Q 014826          126 NRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS  205 (418)
Q Consensus       126 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~  205 (418)
                      +++|.+....+..+.++++|++|++.++....      ......+.++++|+.+++..... ...+     .+..+++|+
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~l~~L~~L~L~~n~l-~~~~-----~~~~l~~L~  210 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLS------YISEGAFEGLSNLRYLNLAMCNL-REIP-----NLTPLIKLD  210 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTTCSSCCEEECTTSCC-SSCC-----CCTTCSSCC
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcc------eeCcchhhcccccCeecCCCCcC-cccc-----ccCCCcccC
Confidence            65554333333345555556655555433221      11112233444444444433211 1111     245567888


Q ss_pred             ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCC
Q 014826          206 CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP  284 (418)
Q Consensus       206 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~  284 (418)
                      .|++++|.+.           ...+..+..+++|+.|++++|.+....+.++..+++|+.|++++|.+....+. +..++
T Consensus       211 ~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          211 ELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             EEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             EEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence            8888888643           22345677788999999999877777777788899999999999987755444 67889


Q ss_pred             ccchhcccccc
Q 014826          285 SLEQLFISYMS  295 (418)
Q Consensus       285 ~L~~L~L~~~~  295 (418)
                      +|+.|++.+|+
T Consensus       280 ~L~~L~L~~Np  290 (440)
T 3zyj_A          280 HLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEcCCCC
Confidence            99999998887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.84  E-value=6.4e-22  Score=197.56  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=91.7

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCC-CCcHH-HHHhhccccccceeeeCCCCCcc-----
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQV-SLPTE-ILRNIKKLVHLRYLNLRFPKIVK-----   86 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~l~~-----   86 (418)
                      +..+++|++|+|+++.     +++..+..+...+++|++|++++| .+.+. ++..+.++++|++|++++|.++.     
T Consensus       101 ~~~~~~L~~L~L~~~~-----~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~  175 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMV-----VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW  175 (594)
T ss_dssp             HHHCTTCCEEEEESCB-----CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred             HHhCCCCCeEEeeCcE-----EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence            3578899999999987     777566665557999999999988 43333 55556689999999999988553     


Q ss_pred             CchhhhcCCCCcEEeccCcc--Cc-ccCChhhhccccccEEeccCCcccccCCcccccccccceecc
Q 014826           87 LPETLCELYNLEKLDISYCF--NL-KELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGE  150 (418)
Q Consensus        87 l~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  150 (418)
                      ++.....+++|+.|++++|.  .. ..++..+..+++|++|++++|.....++..+..+++|+.|++
T Consensus       176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT  242 (594)
T ss_dssp             GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred             HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence            33334467789999998886  11 112222345788888888887444445555566666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=8.6e-20  Score=175.40  Aligned_cols=300  Identities=21%  Similarity=0.194  Sum_probs=148.2

Q ss_pred             ceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccc-cccceeeeCCCCCccCchhhhcCCC
Q 014826           18 KRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKL-VHLRYLNLRFPKIVKLPETLCELYN   96 (418)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~l~~~~~~l~~   96 (418)
                      ++|++|++++|.     ++.  ++.   ..++|++|++++|.+.+     +... ++|++|++++|.++.+| .+..+++
T Consensus        91 ~~L~~L~l~~n~-----l~~--lp~---~~~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~  154 (454)
T 1jl5_A           91 PHLESLVASCNS-----LTE--LPE---LPQSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEKLP-ELQNSSF  154 (454)
T ss_dssp             TTCSEEECCSSC-----CSS--CCC---CCTTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred             CCCCEEEccCCc-----CCc--ccc---ccCCCcEEECCCCccCc-----ccCCCCCCCEEECcCCCCCCCc-ccCCCCC
Confidence            578888888877     333  232   23678888888776442     2222 57788888888777777 4777788


Q ss_pred             CcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccc
Q 014826           97 LEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHL  176 (418)
Q Consensus        97 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  176 (418)
                      |++|++++|. +..+|...   .+|++|++++|.+.+ +| .++++++|++|++.+|....         +...  ..+|
T Consensus       155 L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~---------l~~~--~~~L  217 (454)
T 1jl5_A          155 LKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK---------LPDL--PLSL  217 (454)
T ss_dssp             CCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS---------CCCC--CTTC
T ss_pred             CCEEECCCCc-CcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc---------CCCC--cCcc
Confidence            8888888877 44455432   477788887774433 55 47777777777777665431         0001  1244


Q ss_pred             ccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchh
Q 014826          177 QVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSW  256 (418)
Q Consensus       177 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  256 (418)
                      +.+++..... ...+     .+..+++|+.|++++|....            ++.   .+++|++|++++|.+.. +|..
T Consensus       218 ~~L~l~~n~l-~~lp-----~~~~l~~L~~L~l~~N~l~~------------l~~---~~~~L~~L~l~~N~l~~-l~~~  275 (454)
T 1jl5_A          218 ESIVAGNNIL-EELP-----ELQNLPFLTTIYADNNLLKT------------LPD---LPPSLEALNVRDNYLTD-LPEL  275 (454)
T ss_dssp             CEEECCSSCC-SSCC-----CCTTCTTCCEEECCSSCCSS------------CCS---CCTTCCEEECCSSCCSC-CCCC
T ss_pred             cEEECcCCcC-Cccc-----ccCCCCCCCEEECCCCcCCc------------ccc---cccccCEEECCCCcccc-cCcc
Confidence            4444433221 1111     13456677777777665421            111   13566666666664432 3332


Q ss_pred             hhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCC-CCCcc--ccccCCcccccccc
Q 014826          257 MTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDS-SSSSL--VIIAFPKLKSLRIE  333 (418)
Q Consensus       257 l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~L~~L~l~  333 (418)
                         .++|+.|++++|.+.+ ++.+  .++|+.|++++|. +..++...  . ..+... +...+  ....+++|+.|+++
T Consensus       276 ---~~~L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~-l~~i~~~~--~-~L~~L~Ls~N~l~~lp~~~~~L~~L~L~  345 (454)
T 1jl5_A          276 ---PQSLTFLDVSENIFSG-LSEL--PPNLYYLNASSNE-IRSLCDLP--P-SLEELNVSNNKLIELPALPPRLERLIAS  345 (454)
T ss_dssp             ---CTTCCEEECCSSCCSE-ESCC--CTTCCEEECCSSC-CSEECCCC--T-TCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             ---cCcCCEEECcCCccCc-ccCc--CCcCCEEECcCCc-CCcccCCc--C-cCCEEECCCCccccccccCCcCCEEECC
Confidence               3566666666665443 1111  1344444444443 22221100  0 000000 00000  01124667777776


Q ss_pred             cccccccccccccccCCcccccCCCccEEEEecCCCCC--cCCccccCC-------------CCccEEEeccCCch
Q 014826          334 GLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELK--ALPDHIHQT-------------TTLKRLWILNCGPL  394 (418)
Q Consensus       334 ~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~-------------~~L~~L~l~~c~~l  394 (418)
                      ++ +++.++.           .+++|++|++++|....  .+|..+..+             ++|+.|++++|+..
T Consensus       346 ~N-~l~~lp~-----------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          346 FN-HLAEVPE-----------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             SS-CCSCCCC-----------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             CC-ccccccc-----------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            63 4444432           25677777777773222  345444444             67777777777643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=7.9e-21  Score=182.61  Aligned_cols=99  Identities=20%  Similarity=0.077  Sum_probs=39.4

Q ss_pred             cceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhcccccc-------------ceeeeCCCC
Q 014826           17 VKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHL-------------RYLNLRFPK   83 (418)
Q Consensus        17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~   83 (418)
                      .++|+.|+++++.     ++.  +|..+.++++|++|++++|.+.+.+|..++++++|             ++|++++|.
T Consensus        10 ~~~L~~L~l~~n~-----l~~--iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~   82 (454)
T 1jl5_A           10 NTFLQEPLRHSSN-----LTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG   82 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred             cccchhhhcccCc-----hhh--CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence            3566666666665     433  55556666666666666665445555555554443             566666666


Q ss_pred             CccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826           84 IVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        84 l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  129 (418)
                      ++.+|..   .++|++|++++|.+. .+|..   +.+|++|++++|
T Consensus        83 l~~lp~~---~~~L~~L~l~~n~l~-~lp~~---~~~L~~L~l~~n  121 (454)
T 1jl5_A           83 LSSLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNN  121 (454)
T ss_dssp             CSCCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSS
T ss_pred             cccCCCC---cCCCCEEEccCCcCC-ccccc---cCCCcEEECCCC
Confidence            5555542   245566666555522 24432   244555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.82  E-value=1e-20  Score=172.83  Aligned_cols=242  Identities=17%  Similarity=0.130  Sum_probs=172.2

Q ss_pred             eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHH-HhhccccccceeeeCCCCCccC---chhhhcCCC
Q 014826           21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL-RNIKKLVHLRYLNLRFPKIVKL---PETLCELYN   96 (418)
Q Consensus        21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~l---~~~~~~l~~   96 (418)
                      +.++.+++.     ++.  +|.  .-.++|++|+++++.+. .+| ..+.++++|++|++++|.++.+   +..+..+++
T Consensus        10 ~~l~c~~~~-----l~~--ip~--~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~   79 (306)
T 2z66_A           10 TEIRCNSKG-----LTS--VPT--GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS   79 (306)
T ss_dssp             TEEECCSSC-----CSS--CCS--CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred             CEEEcCCCC-----ccc--CCC--CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence            466777665     443  332  22368889999888854 444 3467888899999988887644   566777888


Q ss_pred             CcEEeccCccCcccCChhhhccccccEEeccCCcccccCC-cccccccccceecceeecCCCCCCCccccccccccCCcc
Q 014826           97 LEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH  175 (418)
Q Consensus        97 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  175 (418)
                      |++|++++|. +..+|..+..+++|++|++++|.+....+ ..+..+++|++|++.++....       ..         
T Consensus        80 L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~---------  142 (306)
T 2z66_A           80 LKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------AF---------  142 (306)
T ss_dssp             CCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-------CS---------
T ss_pred             cCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-------cc---------
Confidence            9999998887 55677778888889999988885544333 467778888888776554320       00         


Q ss_pred             cccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCch
Q 014826          176 LQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS  255 (418)
Q Consensus       176 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  255 (418)
                                         ...+..+++|+.|++++|...          ....+..+..+++|++|++++|.+....+.
T Consensus       143 -------------------~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  193 (306)
T 2z66_A          143 -------------------NGIFNGLSSLEVLKMAGNSFQ----------ENFLPDIFTELRNLTFLDLSQCQLEQLSPT  193 (306)
T ss_dssp             -------------------TTTTTTCTTCCEEECTTCEEG----------GGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             -------------------hhhcccCcCCCEEECCCCccc----------cccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence                               012344578888888887642          123456778899999999999988777788


Q ss_pred             hhhcCCCccEEEeeCCCCCCCCC-CCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccC-Ccccccccc
Q 014826          256 WMTSLTNLKSLGLSLCENCEQLP-PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAF-PKLKSLRIE  333 (418)
Q Consensus       256 ~l~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~  333 (418)
                      ++..+++|+.|++++|.+.+..+ .+..+++|+.|++++|. +.......                +..+ ++|+.|+++
T Consensus       194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------------~~~~~~~L~~L~L~  256 (306)
T 2z66_A          194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQE----------------LQHFPSSLAFLNLT  256 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSS----------------CCCCCTTCCEEECT
T ss_pred             HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC-CcccCHHH----------------HHhhhccCCEEEcc
Confidence            88899999999999998776544 37889999999999997 44333222                2345 478888887


Q ss_pred             cc
Q 014826          334 GL  335 (418)
Q Consensus       334 ~~  335 (418)
                      ++
T Consensus       257 ~N  258 (306)
T 2z66_A          257 QN  258 (306)
T ss_dssp             TC
T ss_pred             CC
Confidence            73

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=5.4e-20  Score=177.31  Aligned_cols=244  Identities=18%  Similarity=0.137  Sum_probs=187.5

Q ss_pred             CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826           49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR  127 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  127 (418)
                      ..+.++.++.. ...+|..+  .+++++|++++|.++.+ +..+.++++|++|++++|.+....+..+.++++|++|+++
T Consensus        55 ~~~~v~c~~~~-l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRG-LSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCC-cCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            35677777766 34455433  26899999999999876 4678999999999999999655556789999999999999


Q ss_pred             CCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccce
Q 014826          128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL  207 (418)
Q Consensus       128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  207 (418)
                      +|.+....+..+..+++|++|++.+|...       ......+..+++|+.+++.....+....   ...+..+++|+.|
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l~~L~~L  201 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPSYAFNRVPSLMRLDLGELKKLEYIS---EGAFEGLFNLKYL  201 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCEEC---TTTTTTCTTCCEE
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcc-------eeCHhHHhcCCcccEEeCCCCCCccccC---hhhccCCCCCCEE
Confidence            99665555556889999999999888764       1222345666777777666544333322   1245678999999


Q ss_pred             EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCcc
Q 014826          208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSL  286 (418)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L  286 (418)
                      ++++|....             ...+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|
T Consensus       202 ~L~~n~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          202 NLGMCNIKD-------------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL  268 (452)
T ss_dssp             ECTTSCCSS-------------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ECCCCcccc-------------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence            999997642             13467789999999999988877888999999999999999988776554 8889999


Q ss_pred             chhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccc
Q 014826          287 EQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGL  335 (418)
Q Consensus       287 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  335 (418)
                      +.|++++|. ++.++...                +..+++|+.|++.+.
T Consensus       269 ~~L~L~~N~-l~~~~~~~----------------~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          269 VELNLAHNN-LSSLPHDL----------------FTPLRYLVELHLHHN  300 (452)
T ss_dssp             CEEECCSSC-CSCCCTTS----------------STTCTTCCEEECCSS
T ss_pred             CEEECCCCc-CCccChHH----------------hccccCCCEEEccCC
Confidence            999999997 66666543                346789999999863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=6.7e-20  Score=176.05  Aligned_cols=243  Identities=16%  Similarity=0.146  Sum_probs=187.1

Q ss_pred             CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826           49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR  127 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  127 (418)
                      ..+.++..+.. ...+|..+.  +++++|++++|.+..++ ..+.++++|++|++++|.+....+..+.++++|++|+++
T Consensus        44 ~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKN-LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCC-CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCC-cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            45677777766 445554443  68999999999998775 678999999999999999555445679999999999999


Q ss_pred             CCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccce
Q 014826          128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL  207 (418)
Q Consensus       128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  207 (418)
                      +|.+....+..+..+++|++|++.+|...       ......+..+++|+.+++.....+....   ...+..+++|+.|
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-------~~~~~~~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l~~L~~L  190 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-------SIPSYAFNRIPSLRRLDLGELKRLSYIS---EGAFEGLSNLRYL  190 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCEEC---TTTTTTCSSCCEE
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCccc-------ccCHHHhhhCcccCEeCCCCCCCcceeC---cchhhcccccCee
Confidence            99665444557889999999999888764       2222345666777777666544333222   1245678999999


Q ss_pred             EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCcc
Q 014826          208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSL  286 (418)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L  286 (418)
                      ++++|....             ...+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|
T Consensus       191 ~L~~n~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  257 (440)
T 3zyj_A          191 NLAMCNLRE-------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL  257 (440)
T ss_dssp             ECTTSCCSS-------------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred             cCCCCcCcc-------------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence            999997641             12467789999999999988777788899999999999999988766554 8899999


Q ss_pred             chhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccc
Q 014826          287 EQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEG  334 (418)
Q Consensus       287 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  334 (418)
                      +.|+|++|. ++.++...                +..+++|+.|++++
T Consensus       258 ~~L~L~~N~-l~~~~~~~----------------~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          258 VEINLAHNN-LTLLPHDL----------------FTPLHHLERIHLHH  288 (440)
T ss_dssp             CEEECTTSC-CCCCCTTT----------------TSSCTTCCEEECCS
T ss_pred             CEEECCCCC-CCccChhH----------------hccccCCCEEEcCC
Confidence            999999997 66666543                34678999999986

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=1.9e-20  Score=171.73  Aligned_cols=268  Identities=15%  Similarity=0.070  Sum_probs=158.6

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCc
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLE   98 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~   98 (418)
                      +++..+++++.     +.. .....+..+++|++|++++|.+.+..+..+.++++|++|++++|.+...+. +..+++|+
T Consensus        11 ~l~i~~ls~~~-----l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~   83 (317)
T 3o53_A           11 RYKIEKVTDSS-----LKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLR   83 (317)
T ss_dssp             EEEEESCCTTT-----HHH-HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCC
T ss_pred             ceeEeeccccc-----hhh-hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCC
Confidence            45555666654     443 455556667788888888887666556677788888888888888775554 77788888


Q ss_pred             EEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccccc
Q 014826           99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQV  178 (418)
Q Consensus        99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~  178 (418)
                      +|++++|. +..++    ..++|++|++++|.+.+..+.   .+++|++|++.++....       .....+..+++|+.
T Consensus        84 ~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-------~~~~~~~~l~~L~~  148 (317)
T 3o53_A           84 TLDLNNNY-VQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-------LRDLDEGCRSRVQY  148 (317)
T ss_dssp             EEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-------GGGBCTGGGSSEEE
T ss_pred             EEECcCCc-ccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-------ccchhhhccCCCCE
Confidence            88888877 33333    347788888888754433222   35677777777666541       11123334445555


Q ss_pred             ccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh
Q 014826          179 CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT  258 (418)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  258 (418)
                      +++...........   .....+++|+.|++++|....            . .....+++|++|++++|.+. .++..+.
T Consensus       149 L~Ls~N~l~~~~~~---~~~~~l~~L~~L~L~~N~l~~------------~-~~~~~l~~L~~L~Ls~N~l~-~l~~~~~  211 (317)
T 3o53_A          149 LDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFIYD------------V-KGQVVFAKLKTLDLSSNKLA-FMGPEFQ  211 (317)
T ss_dssp             EECTTSCCCEEEGG---GGGGGTTTCCEEECTTSCCCE------------E-ECCCCCTTCCEEECCSSCCC-EECGGGG
T ss_pred             EECCCCCCCcccHH---HHhhccCcCCEEECCCCcCcc------------c-ccccccccCCEEECCCCcCC-cchhhhc
Confidence            44443321110000   011235677777777776431            1 22234677777777777554 3444566


Q ss_pred             cCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccccccc
Q 014826          259 SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMEL  338 (418)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  338 (418)
                      .+++|+.|++++|.+......+..+++|+.|++++|+........+                ...+++|+.+++.+++.+
T Consensus       212 ~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~----------------~~~~~~L~~l~l~~~~~l  275 (317)
T 3o53_A          212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF----------------FSKNQRVQTVAKQTVKKL  275 (317)
T ss_dssp             GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH----------------HHTCHHHHHHHHHHHHHH
T ss_pred             ccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHH----------------HhccccceEEECCCchhc
Confidence            7777777777777666433336677777777777776220111111                345666777766655555


Q ss_pred             ccc
Q 014826          339 EEW  341 (418)
Q Consensus       339 ~~l  341 (418)
                      +..
T Consensus       276 ~~~  278 (317)
T 3o53_A          276 TGQ  278 (317)
T ss_dssp             HSS
T ss_pred             cCC
Confidence            443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=1e-21  Score=196.11  Aligned_cols=142  Identities=14%  Similarity=0.072  Sum_probs=92.8

Q ss_pred             ccccccceeeEEeecCCCCCC-C--------CccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhc-cccccceeeeCC
Q 014826           12 VSTRRVKRMRTLLISASGSDH-S--------SLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIK-KLVHLRYLNLRF   81 (418)
Q Consensus        12 ~~~~~~~~L~~L~l~~~~~~~-~--------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~   81 (418)
                      ..+.++++|++|+++++.... .        .....++...+..+++|++|+++++.+.+..+..+. .+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            356778888888888875100 0        111224566667888888888888887666555554 688888888888


Q ss_pred             C-CCcc--CchhhhcCCCCcEEeccCccCcccCChh----hhccccccEEeccCCc--cc-ccCCcccccccccceecce
Q 014826           82 P-KIVK--LPETLCELYNLEKLDISYCFNLKELPEG----IGKLINMKHLLNRGTN--SL-RYMPVGIGRLTGLRTLGEF  151 (418)
Q Consensus        82 ~-~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~  151 (418)
                      | .++.  ++..+..+++|++|++++|.+....+..    ...+++|++|++++|.  .. ..+...+..+++|++|++.
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            8 4553  5555667888888888888744333322    3356788888888874  11 1122223456888888887


Q ss_pred             ee
Q 014826          152 RV  153 (418)
Q Consensus       152 ~~  153 (418)
                      ++
T Consensus       220 ~~  221 (594)
T 2p1m_B          220 RA  221 (594)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=4.2e-21  Score=176.18  Aligned_cols=264  Identities=13%  Similarity=0.062  Sum_probs=179.2

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN  126 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  126 (418)
                      ..++..+++.+.+.......+..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+ .++ ++.+++|++|++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~L   87 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESLSTLRTLDL   87 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTCTTCCEEEC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhcCCCCEEEC
Confidence            34667788888755555556677889999999999998776 678999999999999998544 333 889999999999


Q ss_pred             cCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccc
Q 014826          127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSC  206 (418)
Q Consensus       127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~  206 (418)
                      ++|.+. .    +...++|++|++.++....       ....                               .+++|+.
T Consensus        88 s~n~l~-~----l~~~~~L~~L~l~~n~l~~-------~~~~-------------------------------~~~~L~~  124 (317)
T 3o53_A           88 NNNYVQ-E----LLVGPSIETLHAANNNISR-------VSCS-------------------------------RGQGKKN  124 (317)
T ss_dssp             CSSEEE-E----EEECTTCCEEECCSSCCSE-------EEEC-------------------------------CCSSCEE
T ss_pred             cCCccc-c----ccCCCCcCEEECCCCccCC-------cCcc-------------------------------ccCCCCE
Confidence            999543 2    2244788888887765431       0000                               1245677


Q ss_pred             eEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCCCCCCCCCCCCCCc
Q 014826          207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCENCEQLPPLGKLPS  285 (418)
Q Consensus       207 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~l~~l~~  285 (418)
                      |++++|...           ......+..+++|++|++++|.+....+..+. .+++|+.|++++|.+... +....+++
T Consensus       125 L~l~~N~l~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~  192 (317)
T 3o53_A          125 IYLANNKIT-----------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAK  192 (317)
T ss_dssp             EECCSSCCC-----------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTT
T ss_pred             EECCCCCCC-----------CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cccccccc
Confidence            777766542           11223445567788888887766655555553 677888888888865543 44445778


Q ss_pred             cchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEe
Q 014826          286 LEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVID  365 (418)
Q Consensus       286 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~  365 (418)
                      |+.|++++|. ++.++..                 +..+++|+.|+++++ .++.++....        .+++|++|+++
T Consensus       193 L~~L~Ls~N~-l~~l~~~-----------------~~~l~~L~~L~L~~N-~l~~l~~~~~--------~l~~L~~L~l~  245 (317)
T 3o53_A          193 LKTLDLSSNK-LAFMGPE-----------------FQSAAGVTWISLRNN-KLVLIEKALR--------FSQNLEHFDLR  245 (317)
T ss_dssp             CCEEECCSSC-CCEECGG-----------------GGGGTTCSEEECTTS-CCCEECTTCC--------CCTTCCEEECT
T ss_pred             CCEEECCCCc-CCcchhh-----------------hcccCcccEEECcCC-cccchhhHhh--------cCCCCCEEEcc
Confidence            8888888876 5555443                 335678888888874 5666554333        67788888888


Q ss_pred             cCCCC-CcCCccccCCCCccEEEeccCCchh
Q 014826          366 SCYEL-KALPDHIHQTTTLKRLWILNCGPLG  395 (418)
Q Consensus       366 ~c~~l-~~~~~~~~~~~~L~~L~l~~c~~l~  395 (418)
                      +|+.. ..++..+..++.|+.+++.+|+.+.
T Consensus       246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             TCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            87533 2445556667777777777665444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=3e-21  Score=176.74  Aligned_cols=252  Identities=17%  Similarity=0.157  Sum_probs=179.3

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcH-HHHHhh-------ccccccceeeeCCCCC
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPT-EILRNI-------KKLVHLRYLNLRFPKI   84 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~-------~~l~~L~~L~l~~~~l   84 (418)
                      .+.+.++|+.|++++|.+   .+.. .++.    .  |++|+++++.+.. .++..+       .++++|++|++++|.+
T Consensus        38 ~~~~~~~L~~l~l~~n~l---~~p~-~~~~----~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  107 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE---ADLG-QFTD----I--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV  107 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT---CCCH-HHHH----H--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC
T ss_pred             EEccCCCceeEeeccccc---ccHH-HHHH----H--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc
Confidence            456778899999999982   2222 1222    1  7777887776421 222222       3689999999999998


Q ss_pred             c-cCchhh--hcCCCCcEEeccCccCcccCChhhhcc-----ccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           85 V-KLPETL--CELYNLEKLDISYCFNLKELPEGIGKL-----INMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        85 ~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      + .+|..+  ..+++|++|++++|.+.. .|..++.+     ++|++|++++|.+.+..+..+.++++|++|++.+|...
T Consensus       108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          108 TGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             BSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             cchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence            7 677655  889999999999998444 47777777     89999999999776666688999999999999888754


Q ss_pred             CCCCCcccccccc--ccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCC
Q 014826          157 GDVDGRKACRLES--LKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALR  234 (418)
Q Consensus       157 ~~~~~~~~~~~~~--l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~  234 (418)
                      +     .......  +..+++|+.+++.... +...+......+..+++|+.|++++|.....          .....+.
T Consensus       187 ~-----~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~  250 (312)
T 1wwl_A          187 G-----ERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDA----------AGAPSCD  250 (312)
T ss_dssp             H-----HHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSS----------CCCSCCC
T ss_pred             c-----chHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcc----------cchhhhh
Confidence            1     0011112  2566677776666543 2222222233345678999999999976421          1113345


Q ss_pred             CCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccc
Q 014826          235 PPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMS  295 (418)
Q Consensus       235 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  295 (418)
                      .+++|++|++++|.+. .+|.++.  ++|+.|++++|.+.+. |.+..+++|+.|++++|+
T Consensus       251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred             hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence            5789999999999765 7777665  8999999999988765 668899999999999997

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=8.9e-20  Score=164.77  Aligned_cols=220  Identities=18%  Similarity=0.067  Sum_probs=168.7

Q ss_pred             cEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826           51 RALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        51 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  129 (418)
                      ++++.+++. ...+|..  -.++|++|+++++.++.++ ..+..+++|++|++++|.+....+..++++++|++|++++|
T Consensus        14 ~~~~c~~~~-l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQG-LQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSC-CSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCC-cccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            567777776 3344433  2568999999999999877 56889999999999999855555778999999999999999


Q ss_pred             ccccc-CCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceE
Q 014826          130 NSLRY-MPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLR  208 (418)
Q Consensus       130 ~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  208 (418)
                      ..... .+..+..+++|++|++.++....       .....+..+++|+.+++...... .   .....+..+++|+.|+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~l~-~---~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQE-------LGPGLFRGLAALQYLYLQDNALQ-A---LPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCC-------CCTTTTTTCTTCCEEECCSSCCC-C---CCTTTTTTCTTCCEEE
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCE-------ECHhHhhCCcCCCEEECCCCccc-c---cCHhHhccCCCccEEE
Confidence            63444 47788999999999998887651       22334566677777666543321 1   1112356789999999


Q ss_pred             eecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccc
Q 014826          209 LRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLE  287 (418)
Q Consensus       209 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~  287 (418)
                      +++|...           ......+..+++|++|++++|.+....|.++..+++|+.|++++|.+.+..+. +..+++|+
T Consensus       160 l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          160 LHGNRIS-----------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             CCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             CCCCccc-----------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence            9998753           12223477789999999999988777788899999999999999988765443 78899999


Q ss_pred             hhcccccc
Q 014826          288 QLFISYMS  295 (418)
Q Consensus       288 ~L~L~~~~  295 (418)
                      .|++++|+
T Consensus       229 ~L~l~~N~  236 (285)
T 1ozn_A          229 YLRLNDNP  236 (285)
T ss_dssp             EEECCSSC
T ss_pred             EEeccCCC
Confidence            99999998

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.80  E-value=6.7e-19  Score=174.53  Aligned_cols=257  Identities=20%  Similarity=0.183  Sum_probs=142.9

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCc
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLE   98 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~   98 (418)
                      .++.|+++++.     ++.  +|..+.  ++|++|++++|.+. .+|.   .+++|++|++++|.++.+|.   .+++|+
T Consensus        41 ~l~~L~ls~n~-----L~~--lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~  104 (622)
T 3g06_A           41 GNAVLNVGESG-----LTT--LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLL  104 (622)
T ss_dssp             CCCEEECCSSC-----CSC--CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCC
T ss_pred             CCcEEEecCCC-----cCc--cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCC
Confidence            45666666655     332  222121  55666666666533 2332   35566666666666665554   456666


Q ss_pred             EEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccccc
Q 014826           99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQV  178 (418)
Q Consensus        99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~  178 (418)
                      +|++++|. +..+|.   .+++|+.|++++|. ...+|..   +++|++|++.+|...                      
T Consensus       105 ~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~----------------------  154 (622)
T 3g06_A          105 ELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA----------------------  154 (622)
T ss_dssp             EEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS----------------------
T ss_pred             EEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCC----------------------
Confidence            66666665 334443   34556666666653 2334432   255555555544332                      


Q ss_pred             ccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh
Q 014826          179 CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT  258 (418)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  258 (418)
                             .++.          ...+|+.|++.+|.+..            ++   ..+++|+.|++++|.+. .+|.   
T Consensus       155 -------~l~~----------~~~~L~~L~L~~N~l~~------------l~---~~~~~L~~L~Ls~N~l~-~l~~---  198 (622)
T 3g06_A          155 -------SLPA----------LPSELCKLWAYNNQLTS------------LP---MLPSGLQELSVSDNQLA-SLPT---  198 (622)
T ss_dssp             -------CCCC----------CCTTCCEEECCSSCCSC------------CC---CCCTTCCEEECCSSCCS-CCCC---
T ss_pred             -------CcCC----------ccCCCCEEECCCCCCCC------------Cc---ccCCCCcEEECCCCCCC-CCCC---
Confidence                   0110          12456666666665421            11   33567777777777443 2332   


Q ss_pred             cCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccccccc
Q 014826          259 SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMEL  338 (418)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  338 (418)
                      ..++|+.|++++|.+.. ++.  .+++|+.|++++|. ++.++                    ..+++|+.|+++++ ++
T Consensus       199 ~~~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~-L~~lp--------------------~~l~~L~~L~Ls~N-~L  253 (622)
T 3g06_A          199 LPSELYKLWAYNNRLTS-LPA--LPSGLKELIVSGNR-LTSLP--------------------VLPSELKELMVSGN-RL  253 (622)
T ss_dssp             CCTTCCEEECCSSCCSS-CCC--CCTTCCEEECCSSC-CSCCC--------------------CCCTTCCEEECCSS-CC
T ss_pred             ccchhhEEECcCCcccc-cCC--CCCCCCEEEccCCc-cCcCC--------------------CCCCcCcEEECCCC-CC
Confidence            24677777777775552 332  24667777777775 44443                    14567777777773 55


Q ss_pred             ccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCch
Q 014826          339 EEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPL  394 (418)
Q Consensus       339 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l  394 (418)
                      +.++.           .+++|++|++++| .++.+|..+..+++|+.|++++|+..
T Consensus       254 ~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          254 TSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             SCCCC-----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CcCCc-----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence            55442           3567777777777 56677766677777777777777643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=1.4e-20  Score=172.37  Aligned_cols=202  Identities=17%  Similarity=0.111  Sum_probs=100.4

Q ss_pred             ccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCc--cCchhhh-------cCCCCcEEeccCccCcccCChhh
Q 014826           45 RESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIV--KLPETLC-------ELYNLEKLDISYCFNLKELPEGI  115 (418)
Q Consensus        45 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l  115 (418)
                      ...++|++|+++++.+  .+|..+...  |++|+++++.+.  .+|..+.       ++++|++|++++|.+.+.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3444566666666654  333333222  566666666653  3444333       46666666666666555555544


Q ss_pred             --hccccccEEeccCCcccccCCcccccc-----cccceecceeecCCCCCCCccccccccccCCcccccccccccCCCc
Q 014826          116 --GKLINMKHLLNRGTNSLRYMPVGIGRL-----TGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVS  188 (418)
Q Consensus       116 --~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~  188 (418)
                        +.+++|++|++++|.+.+. |..+..+     ++|++|++.++....       ..                      
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-------~~----------------------  165 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN-------FS----------------------  165 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-------CC----------------------
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-------ch----------------------
Confidence              5666666666666644333 5555544     566666655544320       00                      


Q ss_pred             chhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhC--CCCCCCcEEEEeeecCCC--CCch-hhhcCCCc
Q 014826          189 DVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEAL--RPPLDLKELEIQFNRGNT--VFPS-WMTSLTNL  263 (418)
Q Consensus       189 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~--~~~~-~l~~~~~L  263 (418)
                            ...+..+++|+.|++++|...         .....+..+  ..+++|++|++++|.+..  ..+. .+..+++|
T Consensus       166 ------~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  230 (312)
T 1wwl_A          166 ------CEQVRVFPALSTLDLSDNPEL---------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL  230 (312)
T ss_dssp             ------TTTCCCCSSCCEEECCSCTTC---------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred             ------HHHhccCCCCCEEECCCCCcC---------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence                  001233455556666555421         111122222  455666666666664431  1121 22355666


Q ss_pred             cEEEeeCCCCCCCCC--CCCCCCccchhcccccc
Q 014826          264 KSLGLSLCENCEQLP--PLGKLPSLEQLFISYMS  295 (418)
Q Consensus       264 ~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~~~~  295 (418)
                      +.|++++|.+.+..+  .+..+++|+.|++++|.
T Consensus       231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             CEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            666666665554332  23344555555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=1.7e-20  Score=181.99  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=37.3

Q ss_pred             CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccC
Q 014826           49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRG  128 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  128 (418)
                      +|++|++++|.+.+..|..+..+++|++|++++|.++..++ +..+++|++|++++|. +..++.    .++|++|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcC
Confidence            55555555555444334445555555555555555543333 4455555555555554 222221    24555555555


Q ss_pred             C
Q 014826          129 T  129 (418)
Q Consensus       129 ~  129 (418)
                      |
T Consensus       109 N  109 (487)
T 3oja_A          109 N  109 (487)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=1.1e-19  Score=168.24  Aligned_cols=227  Identities=16%  Similarity=0.100  Sum_probs=132.3

Q ss_pred             CCCccEEecCCCCCcHHHHHhhccc--cccceeeeCCCCCccCchhhhcCCCCcEEeccCccCccc-CChhhhccccccE
Q 014826           47 STSLRALDVSQVSLPTEILRNIKKL--VHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKE-LPEGIGKLINMKH  123 (418)
Q Consensus        47 ~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~  123 (418)
                      -..++.++++++.+..   ..+.++  +++++|+++++.++..+..+..+++|++|++++|.+... ++..+..+++|++
T Consensus        46 ~~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           46 ESLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             STTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             chhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3456777777766442   234444  667777777777665544455677777777777764433 5556667777777


Q ss_pred             EeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826          124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY  203 (418)
Q Consensus       124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~  203 (418)
                      |++++|...+..+..+..+++|++|++.+|...                               ..  ......+..+++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l-------------------------------~~--~~l~~~~~~~~~  169 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-------------------------------SE--FALQTLLSSCSR  169 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC-------------------------------CH--HHHHHHHHHCTT
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC-------------------------------CH--HHHHHHHhcCCC
Confidence            777777555455556666677777766554211                               00  011112344567


Q ss_pred             ccceEeecc-cccCCCCCccccchhhhhhhCCCCC-CCcEEEEeeec--CC-CCCchhhhcCCCccEEEeeCCC-CCCC-
Q 014826          204 LSCLRLRFD-KKKEGGERRKNEDDQLLLEALRPPL-DLKELEIQFNR--GN-TVFPSWMTSLTNLKSLGLSLCE-NCEQ-  276 (418)
Q Consensus       204 L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~-  276 (418)
                      |++|++++| ..          ....+...+..++ +|++|++++|.  +. ..++..+..+++|+.|++++|. ..+. 
T Consensus       170 L~~L~l~~~~~l----------~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  239 (336)
T 2ast_B          170 LDELNLSWCFDF----------TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC  239 (336)
T ss_dssp             CCEEECCCCTTC----------CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             CCEEcCCCCCCc----------ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH
Confidence            777777766 43          2222344455566 77777777772  33 2345555677778888877776 3322 


Q ss_pred             CCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccc
Q 014826          277 LPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGL  335 (418)
Q Consensus       277 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  335 (418)
                      ++.+..+++|+.|++++|..+....   +..             +..+++|+.|++++|
T Consensus       240 ~~~l~~l~~L~~L~l~~~~~~~~~~---~~~-------------l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          240 FQEFFQLNYLQHLSLSRCYDIIPET---LLE-------------LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCCGGG---GGG-------------GGGCTTCCEEECTTS
T ss_pred             HHHHhCCCCCCEeeCCCCCCCCHHH---HHH-------------HhcCCCCCEEeccCc
Confidence            2336666777777777775222111   111             345677777777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=1.4e-19  Score=170.88  Aligned_cols=252  Identities=15%  Similarity=0.091  Sum_probs=144.0

Q ss_pred             CCCccccccceeeEEeecCCCCCCCCccHHH---HHHHhccCCCccEEecCCCC---CcHHHHH-------hhccccccc
Q 014826            9 SLPVSTRRVKRMRTLLISASGSDHSSLNAEI---VEELFRESTSLRALDVSQVS---LPTEILR-------NIKKLVHLR   75 (418)
Q Consensus         9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~---~~~~~~~-------~~~~l~~L~   75 (418)
                      .++..+..+++|++|+|++|.     +++..   ++..+..+++|++|+++++.   +.+.+|.       .+..+++|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~   97 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNT-----IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   97 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSE-----ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHhcCCCccEEECCCCC-----CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence            366777888899999999987     55532   44456788899999998863   2333333       346788999


Q ss_pred             eeeeCCCCCcc-----CchhhhcCCCCcEEeccCccCcccC----Chhhhcc---------ccccEEeccCCccc-ccCC
Q 014826           76 YLNLRFPKIVK-----LPETLCELYNLEKLDISYCFNLKEL----PEGIGKL---------INMKHLLNRGTNSL-RYMP  136 (418)
Q Consensus        76 ~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l---------~~L~~L~l~~~~~~-~~~~  136 (418)
                      +|++++|.++.     +|..+..+++|++|++++|.+....    +..+..+         ++|++|++++|.+. ..++
T Consensus        98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  177 (386)
T 2ca6_A           98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  177 (386)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence            99999988775     6677888899999999998854322    2234444         88999999888654 2333


Q ss_pred             ---cccccccccceecceeecCCCCCCCccccccc-cccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecc
Q 014826          137 ---VGIGRLTGLRTLGEFRVSAGGDVDGRKACRLE-SLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFD  212 (418)
Q Consensus       137 ---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  212 (418)
                         ..+..+++|++|++.+|.....   ....... .+..+++|+.+++................+..+++|+.|++++|
T Consensus       178 ~l~~~l~~~~~L~~L~L~~n~l~~~---g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n  254 (386)
T 2ca6_A          178 EWAKTFQSHRLLHTVKMVQNGIRPE---GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  254 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHH---HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             HHHHHHHhCCCcCEEECcCCCCCHh---HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence               4566788888888877754300   0000111 33344444444444332110001112223444555555555555


Q ss_pred             cccCCCCCccccchhhhhhhC--CCCCCCcEEEEeeecCCC----CCchhh-hcCCCccEEEeeCCCCCC
Q 014826          213 KKKEGGERRKNEDDQLLLEAL--RPPLDLKELEIQFNRGNT----VFPSWM-TSLTNLKSLGLSLCENCE  275 (418)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~~~  275 (418)
                      .+..       .....++..+  ..+++|++|++++|.+..    .+|..+ ..+++|+.|++++|.+.+
T Consensus       255 ~i~~-------~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          255 LLSA-------RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             CCCH-------HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCch-------hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            4320       0001122333  224555555555554443    244444 345555555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.4e-18  Score=168.63  Aligned_cols=238  Identities=14%  Similarity=0.067  Sum_probs=174.2

Q ss_pred             hccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccc
Q 014826           68 IKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLR  146 (418)
Q Consensus        68 ~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  146 (418)
                      ...+++|++|++++|.++.++ ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+. .++    ..++|+
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~  102 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIE  102 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----ECTTCC
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----CCCCcC
Confidence            344568999999999988765 678899999999999998544443  888999999999998543 222    337888


Q ss_pred             eecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccch
Q 014826          147 TLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDD  226 (418)
Q Consensus       147 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  226 (418)
                      +|++.+|....      .                       +         ...+++|+.|++++|...           
T Consensus       103 ~L~L~~N~l~~------~-----------------------~---------~~~l~~L~~L~L~~N~l~-----------  133 (487)
T 3oja_A          103 TLHAANNNISR------V-----------------------S---------CSRGQGKKNIYLANNKIT-----------  133 (487)
T ss_dssp             EEECCSSCCCC------E-----------------------E---------ECCCSSCEEEECCSSCCC-----------
T ss_pred             EEECcCCcCCC------C-----------------------C---------ccccCCCCEEECCCCCCC-----------
Confidence            88887765441      0                       0         011257888888888753           


Q ss_pred             hhhhhhCCCCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceecccccc
Q 014826          227 QLLLEALRPPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFL  305 (418)
Q Consensus       227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~  305 (418)
                      ...+..+..+++|++|++++|.+....|..+. .+++|+.|++++|.+.+. +....+++|+.|++++|. +..++..  
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~--  209 (487)
T 3oja_A          134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPE--  209 (487)
T ss_dssp             SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGG--
T ss_pred             CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCHh--
Confidence            22344556688999999999987777777775 789999999999986644 555568999999999988 6555543  


Q ss_pred             CCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCC-CcCCccccCCCCcc
Q 014826          306 GVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYEL-KALPDHIHQTTTLK  384 (418)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~L~  384 (418)
                                     +..+++|+.|++++ ..+..++....        .+++|+.|++++|+.. ..+|..+..++.|+
T Consensus       210 ---------------~~~l~~L~~L~Ls~-N~l~~lp~~l~--------~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          210 ---------------FQSAAGVTWISLRN-NKLVLIEKALR--------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             ---------------GGGGTTCSEEECTT-SCCCEECTTCC--------CCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred             ---------------HcCCCCccEEEecC-CcCcccchhhc--------cCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence                           34678899999988 45666654433        7789999999988544 24555666788888


Q ss_pred             EEEec
Q 014826          385 RLWIL  389 (418)
Q Consensus       385 ~L~l~  389 (418)
                      .+.+.
T Consensus       266 ~l~~~  270 (487)
T 3oja_A          266 TVAKQ  270 (487)
T ss_dssp             HHHHH
T ss_pred             EEecc
Confidence            77775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=1.8e-18  Score=155.40  Aligned_cols=216  Identities=21%  Similarity=0.141  Sum_probs=143.4

Q ss_pred             CCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc
Q 014826            9 SLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP   88 (418)
Q Consensus         9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~   88 (418)
                      ++|..+.  ++|++|++++|.     ++. ..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.++.++
T Consensus        21 ~ip~~l~--~~l~~L~ls~n~-----l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (276)
T 2z62_A           21 KIPDNLP--FSTKNLDLSFNP-----LRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (276)
T ss_dssp             SCCSSSC--TTCCEEECTTCC-----CCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             ccCCCCC--CCccEEECCCCc-----ccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence            4666554  478999999887     443 12234788889999999988865544556788889999999998888665


Q ss_pred             -hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccc-cCCcccccccccceecceeecCCCCCCCccccc
Q 014826           89 -ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLR-YMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR  166 (418)
Q Consensus        89 -~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  166 (418)
                       ..+.++++|++|++++|.+....+..++++++|++|++++|.+.. .+|..+..+++|++|++.+|....       ..
T Consensus        93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-------~~  165 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-------IY  165 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-------EC
T ss_pred             hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-------CC
Confidence             567888999999998888444334468888899999998886554 367788888888888887765441       00


Q ss_pred             cccccCCcccccccccccCCCcchhhhhhhhcCCccccc-ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEe
Q 014826          167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS-CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQ  245 (418)
Q Consensus       167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  245 (418)
                      ...+..+.                         .++.+. .+++++|...            .+........+|++|+++
T Consensus       166 ~~~~~~l~-------------------------~L~~l~l~L~ls~n~l~------------~~~~~~~~~~~L~~L~L~  208 (276)
T 2z62_A          166 CTDLRVLH-------------------------QMPLLNLSLDLSLNPMN------------FIQPGAFKEIRLKELALD  208 (276)
T ss_dssp             GGGGHHHH-------------------------TCTTCCEEEECCSSCCC------------EECTTSSCSCCEEEEECC
T ss_pred             HHHhhhhh-------------------------hccccceeeecCCCccc------------ccCccccCCCcccEEECC
Confidence            01111111                         111222 5566665532            122222233478888888


Q ss_pred             eecCCCCCchhhhcCCCccEEEeeCCCCCCC
Q 014826          246 FNRGNTVFPSWMTSLTNLKSLGLSLCENCEQ  276 (418)
Q Consensus       246 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  276 (418)
                      +|.+....+..+..+++|+.|++++|++..+
T Consensus       209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             SSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             CCceeecCHhHhcccccccEEEccCCccccc
Confidence            8866544444556788888888888876643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=5.1e-18  Score=156.97  Aligned_cols=129  Identities=14%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             ceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH-HHHhhccccccceeeeCCCCCc-cCchhhhcCC
Q 014826           18 KRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE-ILRNIKKLVHLRYLNLRFPKIV-KLPETLCELY   95 (418)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~   95 (418)
                      ++++.|+++++.     +.+ ..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.++ ..+..+..++
T Consensus        70 ~~l~~L~l~~n~-----l~~-~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~  142 (336)
T 2ast_B           70 QGVIAFRCPRSF-----MDQ-PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS  142 (336)
T ss_dssp             TTCSEEECTTCE-----ECS-CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred             ccceEEEcCCcc-----ccc-cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence            566666666655     222 1111 34556666666666654443 5555566666666666666554 3445555566


Q ss_pred             CCcEEeccCccCcc--cCChhhhccccccEEeccCC-ccccc-CCccccccc-ccceecceee
Q 014826           96 NLEKLDISYCFNLK--ELPEGIGKLINMKHLLNRGT-NSLRY-MPVGIGRLT-GLRTLGEFRV  153 (418)
Q Consensus        96 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~  153 (418)
                      +|++|++++|...+  .++..++++++|++|++++| .+.+. ++..+..++ +|++|++.++
T Consensus       143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            66666666663222  24444556666666666666 33322 344455566 6666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=5.9e-18  Score=152.93  Aligned_cols=131  Identities=21%  Similarity=0.070  Sum_probs=101.1

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE   93 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~   93 (418)
                      +++++++++++++++.     ++.  +|..+  .+++++|++++|.+.+..+..+..+++|++|++++|.++.++.. ..
T Consensus         6 ~~~l~~l~~l~~~~~~-----l~~--ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~   75 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRN-----LTA--LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GT   75 (290)
T ss_dssp             EECSTTCCEEECTTSC-----CSS--CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SC
T ss_pred             ccccCCccEEECCCCC-----CCc--CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CC
Confidence            6778889999999887     444  33222  36889999999986655566788899999999999988877654 67


Q ss_pred             CCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826           94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      +++|++|++++|. +..+|..++++++|++|++++|.+....+..+..+++|++|++.+|..
T Consensus        76 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  136 (290)
T 1p9a_G           76 LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL  136 (290)
T ss_dssp             CTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred             CCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence            8899999999988 567887788888999999988865554456677788888887766543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=1.2e-17  Score=149.60  Aligned_cols=204  Identities=21%  Similarity=0.123  Sum_probs=135.2

Q ss_pred             hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccE
Q 014826           44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKH  123 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  123 (418)
                      +..+++|+.|+++++.+. .+ ..+..+++|++|++++|.++.++ .+..+++|++|++++|.+....+..++++++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            455667777777777633 22 23667777777777777777664 5667777777777777744333344677777777


Q ss_pred             EeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826          124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY  203 (418)
Q Consensus       124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~  203 (418)
                      |++++|.+.+..+..+..+++|++|++.+|....       ...                            ..+..+++
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~----------------------------~~~~~l~~  158 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-------LPK----------------------------GVFDKLTN  158 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------CCT----------------------------TTTTTCTT
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCc-------cCH----------------------------HHhccCcc
Confidence            7777775554444556777777777776654330       000                            01233456


Q ss_pred             ccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCC
Q 014826          204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKL  283 (418)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l  283 (418)
                      |+.|++++|...           ......+..+++|++|++++|.+....+..+..+++|+.|++++|.+.      +.+
T Consensus       159 L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~  221 (272)
T 3rfs_A          159 LTELDLSYNQLQ-----------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTC  221 (272)
T ss_dssp             CCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCT
T ss_pred             CCEEECCCCCcC-----------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccC
Confidence            777777766542           112234567788999999998777766667788999999999999765      446


Q ss_pred             Cccchhcccccccceeccc
Q 014826          284 PSLEQLFISYMSSVKRVGD  302 (418)
Q Consensus       284 ~~L~~L~L~~~~~~~~~~~  302 (418)
                      ++|+.++++.|...+.+|.
T Consensus       222 ~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          222 PGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             TTTHHHHHHHHHTGGGBBC
T ss_pred             cHHHHHHHHHHhCCCcccC
Confidence            7899999988875445543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=2.9e-17  Score=162.78  Aligned_cols=123  Identities=22%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826            7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      -.++|..+.  ++|++|++++|.     ++.  ++.   .+++|++|++++|.+. .+|.   .+++|++|++++|.++.
T Consensus        52 L~~lp~~l~--~~L~~L~L~~N~-----l~~--lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           52 LTTLPDCLP--AHITTLVIPDNN-----LTS--LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             CSCCCSCCC--TTCSEEEECSCC-----CSC--CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred             cCccChhhC--CCCcEEEecCCC-----CCC--CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC
Confidence            346777666  799999999998     443  333   5789999999999854 4443   68999999999999999


Q ss_pred             CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           87 LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        87 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +|.   .+++|+.|++++|. +..+|..   +++|++|++++|.+ ..+|.   .+++|+.|++.+|...
T Consensus       116 l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          116 LPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPA---LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             CCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCS
T ss_pred             CCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCC---ccCCCCEEECCCCCCC
Confidence            887   67899999999998 6667764   48999999999954 44554   3467888888776544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=1.3e-17  Score=152.23  Aligned_cols=194  Identities=20%  Similarity=0.186  Sum_probs=97.1

Q ss_pred             CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826           47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN  126 (418)
Q Consensus        47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  126 (418)
                      +++|++|+++++.+. .++ .+..+++|++|++++|.++.++. +..+++|++|++++|. +..++ .++.+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence            344555555555422 222 34455555555555555555544 5555555555555555 33333 3555555555555


Q ss_pred             cCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccc
Q 014826          127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSC  206 (418)
Q Consensus       127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~  206 (418)
                      ++|.+. .++. +..+++|++|++.++....         ...                            +..+++|+.
T Consensus       115 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~---------~~~----------------------------l~~l~~L~~  155 (308)
T 1h6u_A          115 TSTQIT-DVTP-LAGLSNLQVLYLDLNQITN---------ISP----------------------------LAGLTNLQY  155 (308)
T ss_dssp             TTSCCC-CCGG-GTTCTTCCEEECCSSCCCC---------CGG----------------------------GGGCTTCCE
T ss_pred             CCCCCC-Cchh-hcCCCCCCEEECCCCccCc---------Ccc----------------------------ccCCCCccE
Confidence            555332 2222 4555555555554443220         000                            112244555


Q ss_pred             eEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCcc
Q 014826          207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSL  286 (418)
Q Consensus       207 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L  286 (418)
                      |++++|....            . ..+..+++|+.|++++|.+... +. +..+++|+.|++++|.+.+.. .+..+++|
T Consensus       156 L~l~~n~l~~------------~-~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L  219 (308)
T 1h6u_A          156 LSIGNAQVSD------------L-TPLANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS-PLANTSNL  219 (308)
T ss_dssp             EECCSSCCCC------------C-GGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTC
T ss_pred             EEccCCcCCC------------C-hhhcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc-cccCCCCC
Confidence            5555444320            1 1144556666666666644332 22 566777777777777655333 46667777


Q ss_pred             chhcccccccceecc
Q 014826          287 EQLFISYMSSVKRVG  301 (418)
Q Consensus       287 ~~L~L~~~~~~~~~~  301 (418)
                      +.|++++|+ +...+
T Consensus       220 ~~L~l~~N~-i~~~~  233 (308)
T 1h6u_A          220 FIVTLTNQT-ITNQP  233 (308)
T ss_dssp             CEEEEEEEE-EECCC
T ss_pred             CEEEccCCe-eecCC
Confidence            777777776 44333

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=3.2e-19  Score=168.31  Aligned_cols=246  Identities=18%  Similarity=0.089  Sum_probs=176.5

Q ss_pred             HHHHhccCCCccEEecCCCCCcHHH----HHhhccccccceeeeCCCCCc----cCchhh-------hcCCCCcEEeccC
Q 014826           40 VEELFRESTSLRALDVSQVSLPTEI----LRNIKKLVHLRYLNLRFPKIV----KLPETL-------CELYNLEKLDISY  104 (418)
Q Consensus        40 ~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~----~l~~~~-------~~l~~L~~L~l~~  104 (418)
                      +...+..+++|++|++++|.+.+..    +..+..+++|++|++++|.+.    .+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            4556788999999999999876653    344778999999999998654    344433       6899999999999


Q ss_pred             ccCcc----cCChhhhccccccEEeccCCccccc----CCcccccc---------cccceecceeecCCCCCCCcccccc
Q 014826          105 CFNLK----ELPEGIGKLINMKHLLNRGTNSLRY----MPVGIGRL---------TGLRTLGEFRVSAGGDVDGRKACRL  167 (418)
Q Consensus       105 ~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~  167 (418)
                      |.+..    .++..+..+++|++|++++|.+...    ++..+..+         ++|++|++.+|.....   ......
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~  180 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---SMKEWA  180 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---GHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---HHHHHH
Confidence            99655    3677788999999999999976433    23334444         8999999988876410   011112


Q ss_pred             ccccCCcccccccccccCCCcchhhhhhh-hcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826          168 ESLKNLEHLQVCGIRRLGDVSDVGEAKRL-ELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF  246 (418)
Q Consensus       168 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (418)
                      ..+..+++|+.+++............... .+..+++|+.|++++|....       .....++..+..+++|++|++++
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-------~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-------LGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-------HHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc-------HHHHHHHHHHccCCCcCEEECCC
Confidence            34556667777777655322111111222 56788999999999987520       01144566788899999999999


Q ss_pred             ecCCCC----Cchhhh--cCCCccEEEeeCCCCCC----CCCC-C-CCCCccchhcccccc
Q 014826          247 NRGNTV----FPSWMT--SLTNLKSLGLSLCENCE----QLPP-L-GKLPSLEQLFISYMS  295 (418)
Q Consensus       247 ~~~~~~----~~~~l~--~~~~L~~L~l~~~~~~~----~~~~-l-~~l~~L~~L~L~~~~  295 (418)
                      |.+...    ++.++.  .+++|+.|++++|.+..    .++. + ..+++|+.|++++|+
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            977655    455553  38999999999998876    2443 3 558999999999998

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=2.2e-17  Score=147.81  Aligned_cols=125  Identities=25%  Similarity=0.240  Sum_probs=69.7

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchh-hhcCCCC
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET-LCELYNL   97 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L   97 (418)
                      ..++++++++.     ++.  +|..+  .++|++|+++++.+.+..+..+.++++|++|++++|.++.++.. +..+++|
T Consensus        17 ~~~~l~~~~~~-----l~~--ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A           17 NKNSVDCSSKK-----LTA--IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL   87 (270)
T ss_dssp             TTTEEECTTSC-----CSS--CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred             CCCEEEccCCC-----CCc--cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence            35566666665     333  22211  24566777766664433333566666677777766666666533 3566666


Q ss_pred             cEEeccCccCcccCC-hhhhccccccEEeccCCcccccCCcccccccccceecceee
Q 014826           98 EKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRV  153 (418)
Q Consensus        98 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  153 (418)
                      ++|++++|. +..++ ..+.++++|++|++++|.+....+..+..+++|++|++.++
T Consensus        88 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           88 ETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            666666666 33333 34556666666666666444433444555555555555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=3.2e-17  Score=149.75  Aligned_cols=229  Identities=15%  Similarity=0.113  Sum_probs=132.7

Q ss_pred             CCccEEecCCCCCcHH-HHHh--hccccccceeeeCCCCCc-cCchhh--hcCCCCcEEeccCccCcccCC----hhhhc
Q 014826           48 TSLRALDVSQVSLPTE-ILRN--IKKLVHLRYLNLRFPKIV-KLPETL--CELYNLEKLDISYCFNLKELP----EGIGK  117 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~-~~~~--~~~l~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~  117 (418)
                      ..++.+.+.++.+... +...  +..+++|++|++++|.+. ..|..+  ..+++|++|++++|.+....+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3456666666554332 1111  123455666666666654 334333  566666666666666444333    22345


Q ss_pred             cccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhh
Q 014826          118 LINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLE  197 (418)
Q Consensus       118 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~  197 (418)
                      +++|++|++++|.+....+..+..+++|++|++.+|......   ..........+++|+.+++..... ...+......
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l  219 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER---GLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAAL  219 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH---HHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch---hhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHH
Confidence            666666666666554444555666666666666665532000   000011123444455544443322 2222221222


Q ss_pred             cCCcccccceEeecccccCCCCCccccchhhhhhhCCC---CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCC
Q 014826          198 LDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRP---PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC  274 (418)
Q Consensus       198 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  274 (418)
                      +..+++|++|++++|....           ..+..+..   +++|++|++++|.+. .+|..+.  ++|+.|++++|.+.
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~-----------~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRA-----------TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCC-----------CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             HhcCCCCCEEECCCCCCCc-----------cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence            3556899999999998642           11223333   479999999999766 6676553  89999999999877


Q ss_pred             CCCCCCCCCCccchhcccccc
Q 014826          275 EQLPPLGKLPSLEQLFISYMS  295 (418)
Q Consensus       275 ~~~~~l~~l~~L~~L~L~~~~  295 (418)
                      +. |.+..+++|+.|++++|+
T Consensus       286 ~~-~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          286 RA-PQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             SC-CCTTSCCCCSCEECSSTT
T ss_pred             CC-chhhhCCCccEEECcCCC
Confidence            43 557889999999999997

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=7.1e-17  Score=144.60  Aligned_cols=196  Identities=18%  Similarity=0.177  Sum_probs=143.0

Q ss_pred             CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccC
Q 014826           49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRG  128 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  128 (418)
                      ++..+++..+.+.+.  .....+++|+.|+++++.++.++ .+..+++|++|++++|. +..++ .++.+++|++|++++
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTT
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCC
Confidence            344556666553322  12467899999999999988876 47889999999999998 44454 689999999999999


Q ss_pred             CcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceE
Q 014826          129 TNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLR  208 (418)
Q Consensus       129 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  208 (418)
                      |.+.+..+..+.++++|++|++.+|....            +                 +      ...+..+++|+.|+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~-----------------~------~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQS------------L-----------------P------DGVFDKLTNLTYLN  139 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCC------------C-----------------C------TTTTTTCTTCCEEE
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCc------------c-----------------C------HHHhccCCCCCEEE
Confidence            97665556668899999999987765431            0                 0      00133456788888


Q ss_pred             eecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccc
Q 014826          209 LRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLE  287 (418)
Q Consensus       209 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~  287 (418)
                      +++|...           ......+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+. +..+++|+
T Consensus       140 L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          140 LAHNQLQ-----------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             CCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCCccC-----------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            8877642           11223456778888888888877665556667888888888888887765554 67788888


Q ss_pred             hhcccccc
Q 014826          288 QLFISYMS  295 (418)
Q Consensus       288 ~L~L~~~~  295 (418)
                      .|++.+|+
T Consensus       209 ~L~l~~N~  216 (272)
T 3rfs_A          209 YIWLHDNP  216 (272)
T ss_dssp             EEECCSSC
T ss_pred             EEEccCCC
Confidence            88888876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=1e-16  Score=143.93  Aligned_cols=205  Identities=19%  Similarity=0.095  Sum_probs=149.1

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN  126 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  126 (418)
                      ++|++|+++++.+.+..+..+.++++|++|++++|.++.++ ..+..+++|++|++++|.+....+..++++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            47999999999866555557888999999999999988776 46888999999999999855555567889999999999


Q ss_pred             cCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccc
Q 014826          127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSC  206 (418)
Q Consensus       127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~  206 (418)
                      ++|......+..+..+++|++|++.++....      ..                     ++       ..+..+++|+.
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~---------------------l~-------~~~~~l~~L~~  153 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQS------FK---------------------LP-------EYFSNLTNLEH  153 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC------CC---------------------CC-------GGGGGCTTCCE
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccce------ec---------------------Cc-------hhhccCCCCCE
Confidence            9986655555568888999999887765431      00                     01       12344577888


Q ss_pred             eEeecccccCCCCCccccchhhhhhhCCCCCCCc-EEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCC
Q 014826          207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLK-ELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP  284 (418)
Q Consensus       207 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~  284 (418)
                      |++++|....        ........+..++.+. +|++++|.+... +.......+|+.|++++|.+....+. +..++
T Consensus       154 L~Ls~N~l~~--------~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  224 (276)
T 2z62_A          154 LDLSSNKIQS--------IYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGIFDRLT  224 (276)
T ss_dssp             EECCSSCCCE--------ECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred             EECCCCCCCc--------CCHHHhhhhhhccccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCHhHhcccc
Confidence            8888776531        1111223333444444 899999966544 33344455899999999987765444 68899


Q ss_pred             ccchhcccccc
Q 014826          285 SLEQLFISYMS  295 (418)
Q Consensus       285 ~L~~L~L~~~~  295 (418)
                      +|+.|++++|+
T Consensus       225 ~L~~L~l~~N~  235 (276)
T 2z62_A          225 SLQKIWLHTNP  235 (276)
T ss_dssp             SCCEEECCSSC
T ss_pred             cccEEEccCCc
Confidence            99999999997

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.69  E-value=3.1e-18  Score=160.08  Aligned_cols=229  Identities=15%  Similarity=0.064  Sum_probs=147.2

Q ss_pred             EeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHH----Hhhcccc-ccceeeeCCCCCccC-chhhhcC--
Q 014826           23 LLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL----RNIKKLV-HLRYLNLRFPKIVKL-PETLCEL--   94 (418)
Q Consensus        23 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~l-~~~~~~l--   94 (418)
                      +.++++.     +++ .++.++...++|++|++++|.+.+..+    ..+.+++ +|++|++++|.++.. +..+..+  
T Consensus         3 ~~ls~n~-----~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~   76 (362)
T 3goz_A            3 YKLTLHP-----GSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA   76 (362)
T ss_dssp             EECCCCT-----TCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             ccccccc-----chH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence            4566665     554 466766777779999999998654433    6677788 899999999988754 3445543  


Q ss_pred             ---CCCcEEeccCccCcccCChhhh----cc-ccccEEeccCCcccccCCccc----cc-ccccceecceeecCCCCCCC
Q 014826           95 ---YNLEKLDISYCFNLKELPEGIG----KL-INMKHLLNRGTNSLRYMPVGI----GR-LTGLRTLGEFRVSAGGDVDG  161 (418)
Q Consensus        95 ---~~L~~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~  161 (418)
                         ++|++|++++|.+....+..++    .+ ++|++|++++|.+....+..+    .. .++|++|++.+|....    
T Consensus        77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~----  152 (362)
T 3goz_A           77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI----  152 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG----
T ss_pred             ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH----
Confidence               8899999999985554444333    44 789999999986544433333    23 2577777776554320    


Q ss_pred             ccccccccccCCcccccccccccCCCcchhhhhhhhcCCcc-cccceEeecccccCCCCCccccchhhhhhhCCCC-CCC
Q 014826          162 RKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKK-YLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPP-LDL  239 (418)
Q Consensus       162 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L  239 (418)
                                                 .........+...+ +|++|++++|.....       ....+...+..+ ++|
T Consensus       153 ---------------------------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-------~~~~l~~~l~~~~~~L  198 (362)
T 3goz_A          153 ---------------------------KSSDELIQILAAIPANVNSLNLRGNNLASK-------NCAELAKFLASIPASV  198 (362)
T ss_dssp             ---------------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSCTTC
T ss_pred             ---------------------------HHHHHHHHHHhcCCccccEeeecCCCCchh-------hHHHHHHHHHhCCCCC
Confidence                                       00111222333344 899999988875310       112233344555 588


Q ss_pred             cEEEEeeecCCCCC----chhhhc-CCCccEEEeeCCCCCCCCC-----CCCCCCccchhcccccc
Q 014826          240 KELEIQFNRGNTVF----PSWMTS-LTNLKSLGLSLCENCEQLP-----PLGKLPSLEQLFISYMS  295 (418)
Q Consensus       240 ~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~L~~~~  295 (418)
                      ++|++++|.+.+..    +..+.. .++|+.|++++|.+.+..+     .+..+++|+.|++++|.
T Consensus       199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            99999888766543    334444 4589999998887665432     15667888888888876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=5.2e-16  Score=138.79  Aligned_cols=197  Identities=23%  Similarity=0.212  Sum_probs=118.4

Q ss_pred             CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCCcEEeccCccCcccCChh-hhccccccEEec
Q 014826           49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLN  126 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l  126 (418)
                      ..+.++++++.+. .+|..+.  +++++|++++|.++.++. .+..+++|++|++++|. +..++.. ++++++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence            4667777777633 3443332  467777777777776653 56677777777777776 4445443 466777777777


Q ss_pred             cCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccc
Q 014826          127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSC  206 (418)
Q Consensus       127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~  206 (418)
                      ++|.+....+..+..+++|++|++.++....                             ++      ...+..+++|+.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------------~~------~~~~~~l~~L~~  137 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKS-----------------------------LP------PRVFDSLTKLTY  137 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-----------------------------CC------TTTTTTCTTCCE
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCe-----------------------------eC------HHHhCcCcCCCE
Confidence            7775444334455667777777665544320                             00      012234567777


Q ss_pred             eEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCc
Q 014826          207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPS  285 (418)
Q Consensus       207 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~  285 (418)
                      |++++|....           .....+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++
T Consensus       138 L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          138 LSLGYNELQS-----------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK  206 (270)
T ss_dssp             EECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             EECCCCcCCc-----------cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence            7777765421           1122345667777777777755554444566677777777777766543333 566677


Q ss_pred             cchhcccccc
Q 014826          286 LEQLFISYMS  295 (418)
Q Consensus       286 L~~L~L~~~~  295 (418)
                      |+.|++.+|+
T Consensus       207 L~~L~l~~N~  216 (270)
T 2o6q_A          207 LKMLQLQENP  216 (270)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEecCCC
Confidence            7777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=2.9e-16  Score=143.43  Aligned_cols=205  Identities=16%  Similarity=0.102  Sum_probs=113.7

Q ss_pred             cccceeeeCCCCCcc--Cch--hhhcCCCCcEEeccCccCcccCChhh--hccccccEEeccCCcccccCC----ccccc
Q 014826           72 VHLRYLNLRFPKIVK--LPE--TLCELYNLEKLDISYCFNLKELPEGI--GKLINMKHLLNRGTNSLRYMP----VGIGR  141 (418)
Q Consensus        72 ~~L~~L~l~~~~l~~--l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~~  141 (418)
                      ..++.|.+..+.+..  +..  .+..+++|++|++++|.+.+..|..+  +.+++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            346778888877651  211  13346779999999999777888777  889999999999997665444    33457


Q ss_pred             ccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCc
Q 014826          142 LTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERR  221 (418)
Q Consensus       142 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  221 (418)
                      +++|++|++.+|...       ......+..+++|+.+++.........+......+..+++|++|++++|...      
T Consensus       144 ~~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------  210 (310)
T 4glp_A          144 KPGLKVLSIAQAHSP-------AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME------  210 (310)
T ss_dssp             CSCCCEEEEECCSSC-------CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC------
T ss_pred             ccCCCEEEeeCCCcc-------hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC------
Confidence            899999999888764       1122334445555555444332211100000111234455555555555432      


Q ss_pred             cccchhhhhh-hCCCCCCCcEEEEeeecCCCCCchhhhcC---CCccEEEeeCCCCCCCCCC-CCCCCccchhcccccc
Q 014826          222 KNEDDQLLLE-ALRPPLDLKELEIQFNRGNTVFPSWMTSL---TNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMS  295 (418)
Q Consensus       222 ~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~  295 (418)
                         ....... .+..+++|++|++++|.+....|..+..+   ++|+.|++++|.+. .+|. +  .++|+.|++++|.
T Consensus       211 ---~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L~Ls~N~  283 (310)
T 4glp_A          211 ---TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVLDLSSNR  283 (310)
T ss_dssp             ---CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCEECCSCC
T ss_pred             ---chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEEECCCCc
Confidence               1111111 12344555555555555444444434333   45555555555544 2222 2  1455555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=5.2e-16  Score=141.49  Aligned_cols=170  Identities=18%  Similarity=0.216  Sum_probs=108.5

Q ss_pred             hccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccce
Q 014826           68 IKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRT  147 (418)
Q Consensus        68 ~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  147 (418)
                      ..++++|++|+++++.+..++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.+. .++ .+..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCE
Confidence            345788888888888888776 47788888888888887 555665 888888888888888543 333 5667777777


Q ss_pred             ecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchh
Q 014826          148 LGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQ  227 (418)
Q Consensus       148 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  227 (418)
                      |++.++....         +.                            .+..+++|+.|++++|....           
T Consensus       112 L~l~~n~l~~---------~~----------------------------~l~~l~~L~~L~l~~n~l~~-----------  143 (308)
T 1h6u_A          112 LDLTSTQITD---------VT----------------------------PLAGLSNLQVLYLDLNQITN-----------  143 (308)
T ss_dssp             EECTTSCCCC---------CG----------------------------GGTTCTTCCEEECCSSCCCC-----------
T ss_pred             EECCCCCCCC---------ch----------------------------hhcCCCCCCEEECCCCccCc-----------
Confidence            7776554330         00                            12334566666666665421           


Q ss_pred             hhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccc
Q 014826          228 LLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMS  295 (418)
Q Consensus       228 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  295 (418)
                        ...+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+.+ ++.+..+++|+.|++++|.
T Consensus       144 --~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          144 --ISPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             --CGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSC
T ss_pred             --CccccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCc
Confidence              0114456667777777764443 222 5666677777777665543 3335566666666666665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=4.8e-16  Score=136.37  Aligned_cols=215  Identities=17%  Similarity=0.101  Sum_probs=120.7

Q ss_pred             ceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCC-hhhhccccccEEeccCCcccccCC-cccccccccceeccee
Q 014826           75 RYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLRYMP-VGIGRLTGLRTLGEFR  152 (418)
Q Consensus        75 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~  152 (418)
                      +.+++.+..++.+|. +  ..+|++|++++|. +..++ ..++++++|++|++++|.....++ ..+.++++|++|++.+
T Consensus        14 ~~~~v~c~~l~~ip~-~--~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~   89 (239)
T 2xwt_C           14 EDFRVTCKDIQRIPS-L--PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN   89 (239)
T ss_dssp             STTEEEECSCSSCCC-C--CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred             CcceeEccCccccCC-C--CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence            334444444666665 2  2367777777777 33443 356677777777777774233333 3556666666666654


Q ss_pred             -ecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhh
Q 014826          153 -VSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLE  231 (418)
Q Consensus       153 -~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  231 (418)
                       +...                                                                      .....
T Consensus        90 ~n~l~----------------------------------------------------------------------~i~~~   99 (239)
T 2xwt_C           90 TRNLT----------------------------------------------------------------------YIDPD   99 (239)
T ss_dssp             ETTCC----------------------------------------------------------------------EECTT
T ss_pred             CCCee----------------------------------------------------------------------EcCHH
Confidence             2221                                                                      00011


Q ss_pred             hCCCCCCCcEEEEeeecCCCCCchhhhcCCCcc---EEEeeCC-CCCCCCCC-CCCCCccc-hhcccccccceecccccc
Q 014826          232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLK---SLGLSLC-ENCEQLPP-LGKLPSLE-QLFISYMSSVKRVGDEFL  305 (418)
Q Consensus       232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~-l~~l~~L~-~L~L~~~~~~~~~~~~~~  305 (418)
                      .+..+++|++|++++|.+.. +|. +..+++|+   .|++++| .+....+. +..+++|+ .|++++|. ++.++...+
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~  176 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF  176 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT
T ss_pred             HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc
Confidence            22234455555555554332 343 44555555   6666666 44332222 66677777 77777766 555554322


Q ss_pred             CCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccC-CCccEEEEecCCCCCcCCccccCCCCcc
Q 014826          306 GVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIM-PHLSSLVIDSCYELKALPDHIHQTTTLK  384 (418)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~  384 (418)
                                       ..++|+.|++++++.++.++....       ..+ ++|++|+++++ .++.+|..  .+++|+
T Consensus       177 -----------------~~~~L~~L~L~~n~~l~~i~~~~~-------~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~  229 (239)
T 2xwt_C          177 -----------------NGTKLDAVYLNKNKYLTVIDKDAF-------GGVYSGPSLLDVSQT-SVTALPSK--GLEHLK  229 (239)
T ss_dssp             -----------------TTCEEEEEECTTCTTCCEECTTTT-------TTCSBCCSEEECTTC-CCCCCCCT--TCTTCS
T ss_pred             -----------------CCCCCCEEEcCCCCCcccCCHHHh-------hccccCCcEEECCCC-ccccCChh--HhccCc
Confidence                             126777777777555666643322       256 78888888887 57777654  478888


Q ss_pred             EEEeccCCc
Q 014826          385 RLWILNCGP  393 (418)
Q Consensus       385 ~L~l~~c~~  393 (418)
                      .|++.++..
T Consensus       230 ~L~l~~~~~  238 (239)
T 2xwt_C          230 ELIARNTWT  238 (239)
T ss_dssp             EEECTTC--
T ss_pred             eeeccCccC
Confidence            888877753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.67  E-value=5.9e-16  Score=139.78  Aligned_cols=197  Identities=22%  Similarity=0.162  Sum_probs=112.4

Q ss_pred             ccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccccccccccee
Q 014826           69 KKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTL  148 (418)
Q Consensus        69 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  148 (418)
                      .+++++++++++++.++.+|..+.  ++++.|++++|.+....+..++++++|++|++++|.+. .++.. ..+++|++|
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTL   82 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEE
Confidence            344555555555555555554332  45555555555533333344555555566655555332 22221 445555555


Q ss_pred             cceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhh
Q 014826          149 GEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQL  228 (418)
Q Consensus       149 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  228 (418)
                      ++.++...            .+                 +.       .+..+++|+.|++++|.+..           .
T Consensus        83 ~Ls~N~l~------------~l-----------------~~-------~~~~l~~L~~L~l~~N~l~~-----------l  115 (290)
T 1p9a_G           83 DLSHNQLQ------------SL-----------------PL-------LGQTLPALTVLDVSFNRLTS-----------L  115 (290)
T ss_dssp             ECCSSCCS------------SC-----------------CC-------CTTTCTTCCEEECCSSCCCC-----------C
T ss_pred             ECCCCcCC------------cC-----------------ch-------hhccCCCCCEEECCCCcCcc-----------c
Confidence            55443321            00                 00       11223455555555554321           1


Q ss_pred             hhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCC
Q 014826          229 LLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGV  307 (418)
Q Consensus       229 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~  307 (418)
                      .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|. ++.++...   
T Consensus       116 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~---  191 (290)
T 1p9a_G          116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGF---  191 (290)
T ss_dssp             CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---
T ss_pred             CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhh---
Confidence            123456678888899988877655555667888899999988877754433 5778888888888887 66665543   


Q ss_pred             CCCccCCCCCccccccCCccccccccc
Q 014826          308 ESDRHDSSSSSLVIIAFPKLKSLRIEG  334 (418)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~L~~L~l~~  334 (418)
                                    ...++|+.+++.+
T Consensus       192 --------------~~~~~L~~l~L~~  204 (290)
T 1p9a_G          192 --------------FGSHLLPFAFLHG  204 (290)
T ss_dssp             --------------TTTCCCSEEECCS
T ss_pred             --------------cccccCCeEEeCC
Confidence                          2456788887775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=6.1e-17  Score=142.14  Aligned_cols=195  Identities=13%  Similarity=0.088  Sum_probs=91.4

Q ss_pred             CccEEecCCCCCcHHHHHhhccccccceeeeCCCC-CccCch-hhhcCCCCcEEeccC-ccCcccCC-hhhhccccccEE
Q 014826           49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK-IVKLPE-TLCELYNLEKLDISY-CFNLKELP-EGIGKLINMKHL  124 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~-~~l~~l~~L~~L  124 (418)
                      +|++|+++++.+.+..+..+.++++|++|++++|. ++.++. .+.++++|++|++++ +. +..++ ..++++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence            45555555555333222344555555555555554 554442 445555555555555 33 33333 334555555555


Q ss_pred             eccCCcccccCCcccccccccc---eecceee-cCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCC
Q 014826          125 LNRGTNSLRYMPVGIGRLTGLR---TLGEFRV-SAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDK  200 (418)
Q Consensus       125 ~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~  200 (418)
                      ++++|.+. .+|. +..+++|+   .|++.++ ...       .....                            .+..
T Consensus       111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~-------~i~~~----------------------------~~~~  153 (239)
T 2xwt_C          111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMT-------SIPVN----------------------------AFQG  153 (239)
T ss_dssp             EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCC-------EECTT----------------------------TTTT
T ss_pred             eCCCCCCc-cccc-cccccccccccEEECCCCcchh-------hcCcc----------------------------cccc
Confidence            55555332 2443 44455554   5554443 211       00000                            1122


Q ss_pred             ccccc-ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeec-CCCCCchhhhcC-CCccEEEeeCCCCCCCC
Q 014826          201 KKYLS-CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNR-GNTVFPSWMTSL-TNLKSLGLSLCENCEQL  277 (418)
Q Consensus       201 ~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~  277 (418)
                      +++|+ .+++++|...            .++......++|++|++++|. +....+..+..+ ++|+.|++++|.+.. +
T Consensus       154 l~~L~~~L~l~~n~l~------------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l  220 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFT------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L  220 (239)
T ss_dssp             TBSSEEEEECCSCCCC------------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred             hhcceeEEEcCCCCCc------------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence            33444 4444444321            111111112456666666663 443334455566 777777777776553 3


Q ss_pred             CCCCCCCccchhcccccc
Q 014826          278 PPLGKLPSLEQLFISYMS  295 (418)
Q Consensus       278 ~~l~~l~~L~~L~L~~~~  295 (418)
                      |.. .+++|+.|++.++.
T Consensus       221 ~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          221 PSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             CCT-TCTTCSEEECTTC-
T ss_pred             Chh-HhccCceeeccCcc
Confidence            322 46666666666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=4.1e-17  Score=152.39  Aligned_cols=246  Identities=13%  Similarity=0.040  Sum_probs=163.5

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCC-CccEEecCCCCCcHHHHHhhccc-----cccceeeeCCCC
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFREST-SLRALDVSQVSLPTEILRNIKKL-----VHLRYLNLRFPK   83 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~   83 (418)
                      +|..+...++|++|+|++|.  +.......+...+..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence            45545555669999999998  22222233446788898 99999999998765545455444     999999999999


Q ss_pred             CccCc-hh----hhcC-CCCcEEeccCccCcccCChhhh----c-cccccEEeccCCccccc----CCccccccc-ccce
Q 014826           84 IVKLP-ET----LCEL-YNLEKLDISYCFNLKELPEGIG----K-LINMKHLLNRGTNSLRY----MPVGIGRLT-GLRT  147 (418)
Q Consensus        84 l~~l~-~~----~~~l-~~L~~L~l~~~~~~~~~~~~l~----~-l~~L~~L~l~~~~~~~~----~~~~l~~l~-~L~~  147 (418)
                      ++..+ ..    +..+ ++|++|++++|.+....+..++    . ..+|++|++++|.+...    ++..+..++ +|++
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence            88544 32    4455 8999999999995444443333    3 36999999999966543    334445555 8888


Q ss_pred             ecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCc-ccccceEeecccccCCCCCccccch
Q 014826          148 LGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKK-KYLSCLRLRFDKKKEGGERRKNEDD  226 (418)
Q Consensus       148 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~  226 (418)
                      |++.+|....       .                        ....+...+..+ ++|+.|++++|....       ...
T Consensus       172 L~Ls~n~l~~-------~------------------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------~~~  213 (362)
T 3goz_A          172 LNLRGNNLAS-------K------------------------NCAELAKFLASIPASVTSLDLSANLLGL-------KSY  213 (362)
T ss_dssp             EECTTSCGGG-------S------------------------CHHHHHHHHHTSCTTCCEEECTTSCGGG-------SCH
T ss_pred             eeecCCCCch-------h------------------------hHHHHHHHHHhCCCCCCEEECCCCCCCh-------hHH
Confidence            8887765431       0                        001112223334 478888888886531       011


Q ss_pred             hhhhhhCCC-CCCCcEEEEeeecCCCCCchh----hhcCCCccEEEeeCCCCCCCC--------CCCCCCCccchhcccc
Q 014826          227 QLLLEALRP-PLDLKELEIQFNRGNTVFPSW----MTSLTNLKSLGLSLCENCEQL--------PPLGKLPSLEQLFISY  293 (418)
Q Consensus       227 ~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~--------~~l~~l~~L~~L~L~~  293 (418)
                      ..+...+.. .++|++|++++|.+.+..+..    +..+++|+.|++++|.+...-        ..+..+++|+.|++++
T Consensus       214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~  293 (362)
T 3goz_A          214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG  293 (362)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence            224444443 468999999988776654433    346788999999988633221        1266788899999998


Q ss_pred             cc
Q 014826          294 MS  295 (418)
Q Consensus       294 ~~  295 (418)
                      |.
T Consensus       294 N~  295 (362)
T 3goz_A          294 KE  295 (362)
T ss_dssp             CB
T ss_pred             Cc
Confidence            87

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=3e-15  Score=132.29  Aligned_cols=43  Identities=16%  Similarity=0.077  Sum_probs=25.7

Q ss_pred             CCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCC
Q 014826          233 LRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCE  275 (418)
Q Consensus       233 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  275 (418)
                      +..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            3445666666666665554444455666677777777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.60  E-value=3e-15  Score=135.28  Aligned_cols=99  Identities=20%  Similarity=0.184  Sum_probs=45.0

Q ss_pred             CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826           47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN  126 (418)
Q Consensus        47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  126 (418)
                      +++|++|+++++.+.+ ++ .+..+++|++|++++|.++.++. +..+++|++|++++|. +..++. ++.+++|++|++
T Consensus        45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred             cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence            4445555555554221 11 24445555555555555554443 4455555555555554 222332 445555555555


Q ss_pred             cCCcccccCCcccccccccceeccee
Q 014826          127 RGTNSLRYMPVGIGRLTGLRTLGEFR  152 (418)
Q Consensus       127 ~~~~~~~~~~~~l~~l~~L~~L~l~~  152 (418)
                      ++|.+.. + ..+..+++|+.|++.+
T Consensus       120 ~~n~i~~-~-~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A          120 EHNGISD-I-NGLVHLPQLESLYLGN  143 (291)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCS
T ss_pred             CCCcCCC-C-hhhcCCCCCCEEEccC
Confidence            5553222 1 2334444444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=7.9e-15  Score=129.58  Aligned_cols=176  Identities=19%  Similarity=0.090  Sum_probs=117.0

Q ss_pred             cccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecce
Q 014826           72 VHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF  151 (418)
Q Consensus        72 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  151 (418)
                      ...++++++++.++.+|..+.  ++++.|++++|.+....+..++++++|++|++++|.+.+..+..+..+++|++|++.
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            345666777666666665443  467777777776444444456667777777777775555455556666777777665


Q ss_pred             eecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhh
Q 014826          152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLE  231 (418)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  231 (418)
                      ++....       ...                            ..+..+++|+.|++++|.+.           .....
T Consensus        92 ~n~l~~-------~~~----------------------------~~~~~l~~L~~L~L~~N~l~-----------~~~~~  125 (251)
T 3m19_A           92 NNQLAS-------LPL----------------------------GVFDHLTQLDKLYLGGNQLK-----------SLPSG  125 (251)
T ss_dssp             TSCCCC-------CCT----------------------------TTTTTCTTCCEEECCSSCCC-----------CCCTT
T ss_pred             CCcccc-------cCh----------------------------hHhcccCCCCEEEcCCCcCC-----------CcChh
Confidence            554320       000                            01223456666777666542           11123


Q ss_pred             hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccc
Q 014826          232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMS  295 (418)
Q Consensus       232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~  295 (418)
                      .+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++.+|+
T Consensus       126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            356688999999999977666666788999999999999988866553 8889999999999997

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=4.2e-15  Score=138.05  Aligned_cols=83  Identities=18%  Similarity=0.167  Sum_probs=41.0

Q ss_pred             ccceeeeCCCCCccCch-hhhcCCCCcEEeccCccCcccCCh-hhhccccccEEecc-CCcccccCCcccccccccceec
Q 014826           73 HLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNR-GTNSLRYMPVGIGRLTGLRTLG  149 (418)
Q Consensus        73 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~-~~~~~~~~~~~l~~l~~L~~L~  149 (418)
                      ++++|++++|.++.+|. .|.++++|++|++++|.+.+.++. .+.++++++++... .|.+....|..+..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            45555555555555553 345555555555555554444432 34455555443332 2322222344455555666665


Q ss_pred             ceeecC
Q 014826          150 EFRVSA  155 (418)
Q Consensus       150 l~~~~~  155 (418)
                      +.++..
T Consensus       111 l~~n~l  116 (350)
T 4ay9_X          111 ISNTGI  116 (350)
T ss_dssp             EEEECC
T ss_pred             cccccc
Confidence            555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=1.5e-14  Score=130.67  Aligned_cols=129  Identities=18%  Similarity=0.225  Sum_probs=104.8

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC   92 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~   92 (418)
                      .++.+++|++|++++|.     +++  ++. +..+++|++|++++|.+.+. +. +.++++|++|++++|.++.++. +.
T Consensus        41 ~~~~l~~L~~L~l~~~~-----i~~--~~~-~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~  109 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSD-----IKS--VQG-IQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDLSS-LK  109 (291)
T ss_dssp             CHHHHHTCCEEECTTSC-----CCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCGGG-GT
T ss_pred             chhhcCcccEEEccCCC-----ccc--Chh-HhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCChh-hc
Confidence            35689999999999998     444  333 88899999999999986543 33 8899999999999999998765 88


Q ss_pred             cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      .+++|++|++++|. +..++ .++.+++|++|++++|.+.. + ..+..+++|++|++.+|...
T Consensus       110 ~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          110 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             TCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred             cCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccc
Confidence            99999999999998 55554 58899999999999995543 3 56777888888877666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=1.3e-14  Score=143.66  Aligned_cols=173  Identities=20%  Similarity=0.176  Sum_probs=102.8

Q ss_pred             hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccE
Q 014826           44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKH  123 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  123 (418)
                      +..+.+|+.|+++++.+. .++ .+..+++|++|++++|.+..++. +..+++|+.|++++|. +..++ .+..+++|++
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred             hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence            345566666677666532 222 35666677777777776666654 6666777777777666 33344 4666667777


Q ss_pred             EeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826          124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY  203 (418)
Q Consensus       124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~  203 (418)
                      |++++|.+.. + ..+..+++|+.|++.+|....         +                            ..+..+++
T Consensus       114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~---------l----------------------------~~l~~l~~  154 (605)
T 1m9s_A          114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD---------I----------------------------TVLSRLTK  154 (605)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC---------C----------------------------GGGGSCTT
T ss_pred             EEecCCCCCC-C-ccccCCCccCEEECCCCccCC---------c----------------------------hhhcccCC
Confidence            7776664332 2 335566666666665544320         0                            02334466


Q ss_pred             ccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCC
Q 014826          204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCE  275 (418)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  275 (418)
                      |+.|++++|.+..            ... +..+++|+.|++++|.+.. + ..+..+++|+.|+|++|.+..
T Consensus       155 L~~L~Ls~N~l~~------------~~~-l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          155 LDTLSLEDNQISD------------IVP-LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CSEEECCSSCCCC------------CGG-GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCEEECcCCcCCC------------chh-hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence            7777777665421            111 5667778888887775543 3 346677788888887776554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=7.9e-14  Score=129.45  Aligned_cols=235  Identities=17%  Similarity=0.133  Sum_probs=130.2

Q ss_pred             ceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCcccccCCc-ccccccccceeccee
Q 014826           75 RYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSLRYMPV-GIGRLTGLRTLGEFR  152 (418)
Q Consensus        75 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~  152 (418)
                      ++++.+++.++++|..+  .+++++|++++|+ ++.+|. .++++++|++|++++|.+.+.++. .+.+++++..+....
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56788888899999765  4689999999998 667775 589999999999999976666664 567888877654433


Q ss_pred             -ecCCCCCCCccccccccccCCcccccccccccC--CCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhh
Q 014826          153 -VSAGGDVDGRKACRLESLKNLEHLQVCGIRRLG--DVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLL  229 (418)
Q Consensus       153 -~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  229 (418)
                       +...       ......+..+++|+.+++....  .++..      .......+..+++..+...          ....
T Consensus        89 ~N~l~-------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~------~~~~~~~l~~l~l~~~~~i----------~~l~  145 (350)
T 4ay9_X           89 ANNLL-------YINPEAFQNLPNLQYLLISNTGIKHLPDV------HKIHSLQKVLLDIQDNINI----------HTIE  145 (350)
T ss_dssp             ETTCC-------EECTTSBCCCTTCCEEEEEEECCSSCCCC------TTCCBSSCEEEEEESCTTC----------CEEC
T ss_pred             CCccc-------ccCchhhhhccccccccccccccccCCch------hhcccchhhhhhhcccccc----------cccc
Confidence             3322       1122334455555554443322  11110      1112233444444332210          0000


Q ss_pred             hhhCCC-CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC--CCCCCccchhcccccccceeccccccC
Q 014826          230 LEALRP-PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP--LGKLPSLEQLFISYMSSVKRVGDEFLG  306 (418)
Q Consensus       230 ~~~l~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~  306 (418)
                      ...+.. ...++.|++++|.+. .++.......+|+.+.+.++...+.+|.  +..+++|+.|++++|. ++.++..   
T Consensus       146 ~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~---  220 (350)
T 4ay9_X          146 RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY---  220 (350)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS---
T ss_pred             ccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh---
Confidence            111222 234566666666433 3333333445666666665544445543  5566666666666665 5444422   


Q ss_pred             CCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEe
Q 014826          307 VESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVID  365 (418)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~  365 (418)
                                      .+.+|+.|.+.++.+++.++. ..        .+++|+.+++.
T Consensus       221 ----------------~~~~L~~L~~l~~~~l~~lP~-l~--------~l~~L~~l~l~  254 (350)
T 4ay9_X          221 ----------------GLENLKKLRARSTYNLKKLPT-LE--------KLVALMEASLT  254 (350)
T ss_dssp             ----------------SCTTCCEEECTTCTTCCCCCC-TT--------TCCSCCEEECS
T ss_pred             ----------------hhccchHhhhccCCCcCcCCC-ch--------hCcChhhCcCC
Confidence                            345555555555555555552 11        45666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.53  E-value=1.1e-14  Score=123.74  Aligned_cols=133  Identities=13%  Similarity=0.137  Sum_probs=101.7

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc-Cchhh
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK-LPETL   91 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~   91 (418)
                      ....+++|++|+++++.     +++  ++ .+..+++|++|++++|.+. .+ ..+..+++|++|++++|.++. .+..+
T Consensus        39 ~~~~l~~L~~L~l~~n~-----i~~--l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l  108 (197)
T 4ezg_A           39 TEAQMNSLTYITLANIN-----VTD--LT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNL  108 (197)
T ss_dssp             BHHHHHTCCEEEEESSC-----CSC--CT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred             ChhhcCCccEEeccCCC-----ccC--hH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhh
Confidence            44678889999998887     443  34 3788888999999888632 32 357788889999998888774 56677


Q ss_pred             hcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           92 CELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      ..+++|++|++++|.+....+..++.+++|++|++++|.....++ .+..+++|++|++.+|...
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred             cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence            888889999998888666677778888889999998886455665 5778888888888766543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.53  E-value=1.8e-14  Score=122.26  Aligned_cols=138  Identities=16%  Similarity=0.210  Sum_probs=115.9

Q ss_pred             CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826            7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      -.++| .+..+++|++|++++|.     ++.  ++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus        56 i~~l~-~l~~l~~L~~L~l~~n~-----~~~--~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  126 (197)
T 4ezg_A           56 VTDLT-GIEYAHNIKDLTINNIH-----ATN--YN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD  126 (197)
T ss_dssp             CSCCT-TGGGCTTCSEEEEESCC-----CSC--CG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred             ccChH-HHhcCCCCCEEEccCCC-----CCc--ch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence            34577 68999999999999997     443  33 38899999999999999877777789999999999999999884


Q ss_pred             -CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           87 -LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        87 -l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                       .+..+..+++|++|++++|..++.++ .++.+++|++|++++|.+. .++ .+..+++|++|++.++...
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC---
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcccC
Confidence             66789999999999999998677777 5999999999999999554 444 7889999999999887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.52  E-value=1.4e-14  Score=125.22  Aligned_cols=141  Identities=16%  Similarity=0.140  Sum_probs=111.3

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  ++|++|++++|.     ++. +.+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.++.+
T Consensus        24 ~~iP~~l~--~~l~~L~l~~n~-----i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           24 TEIPTNLP--ETITEIRLEQNT-----IKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL   95 (220)
T ss_dssp             SSCCSSCC--TTCCEEECCSSC-----CCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CcCCCccC--cCCCEEECCCCc-----CCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence            45666555  589999999987     444 2234578889999999999987666677888899999999999998888


Q ss_pred             chh-hhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           88 PET-LCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        88 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      |.. +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++.+|.+.
T Consensus        96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            754 678999999999999855555677888999999999999666555566888889999988877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.52  E-value=3.7e-14  Score=140.37  Aligned_cols=175  Identities=19%  Similarity=0.194  Sum_probs=137.8

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhh
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLC   92 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~   92 (418)
                      .+..+++|+.|++++|.     +..  ++. +..+++|+.|+|++|.+.+..+  +..+++|++|++++|.+..++ .+.
T Consensus        38 ~~~~L~~L~~L~l~~n~-----i~~--l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~  106 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSD-----IKS--VQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLK  106 (605)
T ss_dssp             CHHHHTTCCCCBCTTCC-----CCC--CTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TST
T ss_pred             chhcCCCCCEEECcCCC-----CCC--ChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhc
Confidence            35689999999999998     444  333 8899999999999998654333  889999999999999999886 688


Q ss_pred             cCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccC
Q 014826           93 ELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKN  172 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  172 (418)
                      .+++|+.|++++|. +..++ .+..+++|+.|++++|.+.. + ..+..+++|+.|++.+|....      .   .    
T Consensus       107 ~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~------~---~----  169 (605)
T 1m9s_A          107 DLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD------I---V----  169 (605)
T ss_dssp             TCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCC------C---G----
T ss_pred             cCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCC------c---h----
Confidence            99999999999998 44554 58999999999999996544 3 668899999999987776441      0   0    


Q ss_pred             CcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCC
Q 014826          173 LEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTV  252 (418)
Q Consensus       173 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  252 (418)
                                              .+..+++|+.|++++|.+..             ...+..+++|+.|++++|.+...
T Consensus       170 ------------------------~l~~l~~L~~L~Ls~N~i~~-------------l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          170 ------------------------PLAGLTKLQNLYLSKNHISD-------------LRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ------------------------GGTTCTTCCEEECCSSCCCB-------------CGGGTTCTTCSEEECCSEEEECC
T ss_pred             ------------------------hhccCCCCCEEECcCCCCCC-------------ChHHccCCCCCEEEccCCcCcCC
Confidence                                    02345788888888887531             13577789999999999976544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.50  E-value=2.8e-14  Score=124.12  Aligned_cols=140  Identities=21%  Similarity=0.268  Sum_probs=94.5

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  ++|++|+|++|.     ++. ..+..|..+++|++|++++|.+....+..+..+++|++|++++|.++.+
T Consensus        32 ~~ip~~~~--~~L~~L~Ls~n~-----i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           32 ASVPAGIP--TNAQILYLHDNQ-----ITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             SSCCSCCC--TTCSEEECCSSC-----CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CccCCCCC--CCCCEEEcCCCc-----cCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence            44665444  677888888776     333 2244467777888888887775433334467777888888888777766


Q ss_pred             ch-hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           88 PE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        88 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +. .+..+++|++|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|+.|++.+|...
T Consensus       104 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            53 35677788888888777 4577777777788888888777554433445667777777777666544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.49  E-value=2e-14  Score=127.72  Aligned_cols=60  Identities=20%  Similarity=0.158  Sum_probs=40.3

Q ss_pred             CCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccc
Q 014826          233 LRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMS  295 (418)
Q Consensus       233 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  295 (418)
                      +..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|+
T Consensus       124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence            45566677777776654432 2 466777777777777766654 557777777788777776

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.49  E-value=4.9e-14  Score=120.71  Aligned_cols=141  Identities=22%  Similarity=0.183  Sum_probs=107.0

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+  .++|++|++++|.     ++. ..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+
T Consensus        20 ~~~p~~~--~~~l~~L~l~~n~-----l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~   91 (208)
T 2o6s_A           20 TSVPTGI--PAQTTYLDLETNS-----LKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL   91 (208)
T ss_dssp             SSCCSCC--CTTCSEEECCSSC-----CCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cCCCCCC--CCCCcEEEcCCCc-----cCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc
Confidence            3456544  3589999999998     443 2344578899999999999986644444578899999999999998877


Q ss_pred             ch-hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           88 PE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        88 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +. .+..+++|++|++++|.+....+..++.+++|++|++++|.+.+..+..+..+++|+.|++.+|...
T Consensus        92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            74 4678999999999999844333445788999999999998665544555788999999998877544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=1.4e-15  Score=149.61  Aligned_cols=130  Identities=12%  Similarity=0.105  Sum_probs=78.9

Q ss_pred             cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC-------------CcHHHHHhhccccccceee-eC
Q 014826           15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS-------------LPTEILRNIKKLVHLRYLN-LR   80 (418)
Q Consensus        15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~   80 (418)
                      ..+++|+.|+|++|.     ++.  +|..+.++++|+.|+++++.             ..+..|..++.+++|+.|+ ++
T Consensus       346 ~~~~~L~~L~Ls~n~-----L~~--Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~  418 (567)
T 1dce_A          346 ATDEQLFRCELSVEK-----STV--LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  418 (567)
T ss_dssp             STTTTSSSCCCCHHH-----HHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             ccCccceeccCChhh-----HHh--hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence            456777788888876     654  67777888888888876653             2334555566677777776 45


Q ss_pred             CCCCccCch------hhhc--CCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceeccee
Q 014826           81 FPKIVKLPE------TLCE--LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFR  152 (418)
Q Consensus        81 ~~~l~~l~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  152 (418)
                      .+.+..++.      .+..  ...|+.|++++|. +..+|. ++.+++|+.|++++|.+. .+|..++.+++|++|++.+
T Consensus       419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred             hcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence            443332221      1111  1246677777766 444665 666777777777766433 5666666666666666654


Q ss_pred             ec
Q 014826          153 VS  154 (418)
Q Consensus       153 ~~  154 (418)
                      |.
T Consensus       496 N~  497 (567)
T 1dce_A          496 NA  497 (567)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.48  E-value=3.8e-14  Score=121.43  Aligned_cols=107  Identities=23%  Similarity=0.198  Sum_probs=71.3

Q ss_pred             CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCCcEEeccCccCcccCC-hhhhccccccEE
Q 014826           47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELP-EGIGKLINMKHL  124 (418)
Q Consensus        47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L  124 (418)
                      .++|++|+++++.+.+..+..+.++++|++|++++|.++.++. .+..+++|++|++++|.+. .++ ..++.+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence            4578888888877554334446777888888888877776664 3567778888888877733 443 346777778888


Q ss_pred             eccCCcccccCCcccccccccceecceeec
Q 014826          125 LNRGTNSLRYMPVGIGRLTGLRTLGEFRVS  154 (418)
Q Consensus       125 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  154 (418)
                      ++++|.+....+..+..+++|++|++.++.
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence            887775544334445667777777665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=5.4e-14  Score=121.49  Aligned_cols=142  Identities=12%  Similarity=0.074  Sum_probs=98.3

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      ..+|..+..  .+++|+|++|.     ++.......|..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+
T Consensus        24 ~~iP~~~~~--~~~~L~L~~N~-----l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~   96 (220)
T 2v70_A           24 NKIPEHIPQ--YTAELRLNNNE-----FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV   96 (220)
T ss_dssp             SSCCSCCCT--TCSEEECCSSC-----CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccCccCCCC--CCCEEEcCCCc-----CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc
Confidence            346655533  45788888877     44300123367778888888888875554445677788888888888887766


Q ss_pred             c-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           88 P-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        88 ~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      + ..+..+++|++|++++|.+....|..+.++++|++|++++|.+.+..|..+..+++|+.|++.+|...
T Consensus        97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            5 34677888888888888755555666777888888888887666656777777888888877776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=7.7e-14  Score=115.16  Aligned_cols=132  Identities=25%  Similarity=0.212  Sum_probs=92.3

Q ss_pred             cceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc-CchhhhcCC
Q 014826           17 VKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK-LPETLCELY   95 (418)
Q Consensus        17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~   95 (418)
                      .++|++|++++|.     +++..++..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.. +|..+..++
T Consensus        23 ~~~L~~L~l~~n~-----l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           23 PAAVRELVLDNCK-----SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TTSCSEEECCSCB-----CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             cccCCEEECCCCC-----CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            3678888888876     44112455567778888888888875443  567778888888888888776 666666788


Q ss_pred             CCcEEeccCccCcccCC--hhhhccccccEEeccCCcccccCC---cccccccccceecceeecCC
Q 014826           96 NLEKLDISYCFNLKELP--EGIGKLINMKHLLNRGTNSLRYMP---VGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        96 ~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +|++|++++|. +..++  ..++.+++|++|++++|.+....+   ..+..+++|++|++..+...
T Consensus        96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            88888888887 44444  567778888888888885443322   26777888888887776543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=6.6e-14  Score=113.13  Aligned_cols=128  Identities=25%  Similarity=0.215  Sum_probs=98.9

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc-CchhhhcC
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK-LPETLCEL   94 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l   94 (418)
                      ..++|++|++++|.     +++..++..+..+++|++|++++|.+.+.  ..+.++++|++|++++|.++. +|..+..+
T Consensus        15 ~~~~l~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   87 (149)
T 2je0_A           15 TPSDVKELVLDNSR-----SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC   87 (149)
T ss_dssp             CGGGCSEEECTTCB-----CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred             CCccCeEEEccCCc-----CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence            44789999999987     44112555578889999999999986544  567888999999999999886 77777789


Q ss_pred             CCCcEEeccCccCcccCC--hhhhccccccEEeccCCcccccCC---cccccccccceecce
Q 014826           95 YNLEKLDISYCFNLKELP--EGIGKLINMKHLLNRGTNSLRYMP---VGIGRLTGLRTLGEF  151 (418)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  151 (418)
                      ++|++|++++|. +..++  ..++.+++|++|++++|.+.+..+   ..+..+++|+.|++.
T Consensus        88 ~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           88 PNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999999998 44443  678889999999999985544433   367788888888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=2.4e-13  Score=113.09  Aligned_cols=132  Identities=19%  Similarity=0.135  Sum_probs=107.3

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchh-h
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET-L   91 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~   91 (418)
                      .+.++++|++|++++|.     ++.  ++.+....++|++|++++|.+.+.  ..+..+++|++|++++|.++.+|.. +
T Consensus        14 ~~~~~~~L~~L~l~~n~-----l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYK-----IPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             EEECTTSCEEEECTTSC-----CCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             hcCCcCCceEEEeeCCC-----Cch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh
Confidence            57789999999999998     443  344333344999999999986553  5788999999999999999988744 4


Q ss_pred             hcCCCCcEEeccCccCcccCCh--hhhccccccEEeccCCcccccCCcc----cccccccceecceeecC
Q 014826           92 CELYNLEKLDISYCFNLKELPE--GIGKLINMKHLLNRGTNSLRYMPVG----IGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~  155 (418)
                      ..+++|++|++++|. ++.+|.  .++.+++|++|++++|.+. .+|..    +..+++|+.|++..+..
T Consensus        85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            899999999999998 577776  7889999999999999554 55654    78899999999877653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.41  E-value=4.1e-13  Score=131.57  Aligned_cols=95  Identities=20%  Similarity=0.238  Sum_probs=59.7

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR  127 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  127 (418)
                      .+|++|+++++.+.+ +|..+  .++|++|++++|.++.+|   ..+++|++|++++|. +..+|. +.+  +|++|+++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence            467777777776443 44433  366777777777777776   346777777777776 333665 443  77777777


Q ss_pred             CCcccccCCcccccccccceecceeecCC
Q 014826          128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +|.+.+ +|.   .+++|+.|++.+|...
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccC
Confidence            774433 555   4667777776665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.40  E-value=1.2e-12  Score=128.27  Aligned_cols=175  Identities=17%  Similarity=0.164  Sum_probs=112.3

Q ss_pred             cccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecce
Q 014826           72 VHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEF  151 (418)
Q Consensus        72 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  151 (418)
                      .++++|++++|.++.+|..+  .++|++|++++|. +..+|   ..+++|++|++++|.+.+ +|. +.+  +|++|++.
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            38999999999999898755  4889999999998 55788   557999999999996554 777 654  89999988


Q ss_pred             eecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhh
Q 014826          152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLE  231 (418)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  231 (418)
                      +|....         +..  .                            +++|+.|++++|.+..            ++.
T Consensus       129 ~N~l~~---------lp~--~----------------------------l~~L~~L~Ls~N~l~~------------lp~  157 (571)
T 3cvr_A          129 NNQLTM---------LPE--L----------------------------PALLEYINADNNQLTM------------LPE  157 (571)
T ss_dssp             SSCCSC---------CCC--C----------------------------CTTCCEEECCSSCCSC------------CCC
T ss_pred             CCcCCC---------CCC--c----------------------------CccccEEeCCCCccCc------------CCC
Confidence            776541         000  1                            2455666666555321            111


Q ss_pred             hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCcc-------chhcccccccceeccccc
Q 014826          232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSL-------EQLFISYMSSVKRVGDEF  304 (418)
Q Consensus       232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L-------~~L~L~~~~~~~~~~~~~  304 (418)
                         .+++|++|++++|.+.. +|. +.  ++|+.|++++|.+. .+|.+..  +|       +.|++++|. ++.+|.. 
T Consensus       158 ---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~-  225 (571)
T 3cvr_A          158 ---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPAVPV--RNHHSEETEIFFRCRENR-ITHIPEN-  225 (571)
T ss_dssp             ---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCCCC----------CCEEEECCSSC-CCCCCGG-
T ss_pred             ---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhhHHH--hhhcccccceEEecCCCc-ceecCHH-
Confidence               34566666666665443 444 33  66777777776555 3333322  45       667776665 5545443 


Q ss_pred             cCCCCCccCCCCCccccccCCcccccccccc
Q 014826          305 LGVESDRHDSSSSSLVIIAFPKLKSLRIEGL  335 (418)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  335 (418)
                                      +..+++|+.|+++++
T Consensus       226 ----------------l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          226 ----------------ILSLDPTCTIILEDN  240 (571)
T ss_dssp             ----------------GGGSCTTEEEECCSS
T ss_pred             ----------------HhcCCCCCEEEeeCC
Confidence                            234666666666663

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.39  E-value=3.2e-13  Score=111.43  Aligned_cols=120  Identities=22%  Similarity=0.198  Sum_probs=101.4

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      +.+|..+..+++|++|++++|.     ++.  + ..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.++.+
T Consensus        39 ~~i~~~~~~l~~L~~L~l~~n~-----l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  110 (168)
T 2ell_A           39 GKIEGLTAEFVNLEFLSLINVG-----LIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI  110 (168)
T ss_dssp             TBCSSCCGGGGGCCEEEEESSC-----CCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSS
T ss_pred             hhHHHHHHhCCCCCEEeCcCCC-----CCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcc
Confidence            4689889999999999999998     444  2 4588999999999999997665777778899999999999999987


Q ss_pred             c--hhhhcCCCCcEEeccCccCcccCCh----hhhccccccEEeccCCcccccCCc
Q 014826           88 P--ETLCELYNLEKLDISYCFNLKELPE----GIGKLINMKHLLNRGTNSLRYMPV  137 (418)
Q Consensus        88 ~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~  137 (418)
                      +  ..+..+++|++|++++|. +..++.    .+..+++|++|++++|. ...+|.
T Consensus       111 ~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A          111 STLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             GGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred             hhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence            6  678899999999999998 555554    78899999999999984 344443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=4.6e-13  Score=118.97  Aligned_cols=125  Identities=17%  Similarity=0.179  Sum_probs=61.3

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE   93 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~   93 (418)
                      +.++++|++|++++|.     +++  ++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.++.+|.... 
T Consensus        37 ~~~l~~L~~L~l~~n~-----i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-  105 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSN-----IQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNGIPS-  105 (263)
T ss_dssp             HHHHTTCSEEECTTSC-----CCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTTCCC-
T ss_pred             hhhcCcCcEEECcCCC-----ccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCcccc-
Confidence            4455555555555554     222  22 24555555555555555332 222 5555555555555555555443222 


Q ss_pred             CCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeec
Q 014826           94 LYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVS  154 (418)
Q Consensus        94 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  154 (418)
                       ++|++|++++|. +..++ .++.+++|++|++++|.+. .++ .+..+++|+.|++.+|.
T Consensus       106 -~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          106 -ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             -SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEECTTSC
T ss_pred             -CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEECCCCc
Confidence             555555555555 33333 3555555555555555332 222 34455555555554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.38  E-value=2.9e-12  Score=110.55  Aligned_cols=78  Identities=10%  Similarity=0.111  Sum_probs=48.5

Q ss_pred             ceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeec
Q 014826           75 RYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVS  154 (418)
Q Consensus        75 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  154 (418)
                      +.++.+++.++.+|..+.  ++|+.|++++|.+....+..+..+++|++|++++|.+....|..+..+++|++|++.+|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            456666666666665432  567777777776333233356667777777777775555456666666666666665544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=1.4e-12  Score=119.85  Aligned_cols=299  Identities=15%  Similarity=0.137  Sum_probs=165.5

Q ss_pred             ccCCCCCccccc--cceeeEEeecCCCCCCCCccHHHHHHHhcc-CCCccEEecCCCCCcH-HHHHhhccccccceeeeC
Q 014826            5 SKGASLPVSTRR--VKRMRTLLISASGSDHSSLNAEIVEELFRE-STSLRALDVSQVSLPT-EILRNIKKLVHLRYLNLR   80 (418)
Q Consensus         5 ~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~   80 (418)
                      ...|.++..+..  ..++++|.++++-      ....+.. +.. +++|++|+|+++.+.. ...  -+.++.++.+...
T Consensus        10 ~~~g~l~~~l~~~~~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~   80 (329)
T 3sb4_A           10 SKPGTLISMMTEEEANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYM   80 (329)
T ss_dssp             SSTTCGGGGSCHHHHHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEEC
T ss_pred             CCCCcHHhhccchhhCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCcceeEEecCc--ccccccccccccc
Confidence            345666666664  7889999998853      3323444 344 8889999999887440 000  1122223444444


Q ss_pred             CCCCccCc-hhhhc--------CCCCcEEeccCccCcccCC-hhhhccccccEEeccCCcccccCCcccccccccceecc
Q 014826           81 FPKIVKLP-ETLCE--------LYNLEKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGE  150 (418)
Q Consensus        81 ~~~l~~l~-~~~~~--------l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  150 (418)
                      .+.   +| ..|.+        +++|+.+++.. . +..++ .++.+|++|+.+++.++......+..|..+.++..+..
T Consensus        81 ~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A           81 ANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPL  155 (329)
T ss_dssp             TTE---ECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred             ccc---cCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecC
Confidence            442   33 34555        88899998888 4 55554 45888889999998888554444455666655555543


Q ss_pred             eeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccccc-ceEeecccccCCCCCccccchhhh
Q 014826          151 FRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS-CLRLRFDKKKEGGERRKNEDDQLL  229 (418)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~  229 (418)
                      ......              .....+.                 ...+..|..|+ .+.+.....          .....
T Consensus       156 ~~~~~~--------------~~~~~i~-----------------~~~f~~~~~L~~~i~~~~~~~----------l~~~~  194 (329)
T 3sb4_A          156 GSSDAY--------------RFKNRWE-----------------HFAFIEGEPLETTIQVGAMGK----------LEDEI  194 (329)
T ss_dssp             TCTHHH--------------HTSTTTT-----------------TSCEEESCCCEEEEEECTTCC----------HHHHH
T ss_pred             cchhhh--------------hcccccc-----------------ccccccccccceeEEecCCCc----------HHHHH
Confidence            221000              0000000                 00111223333 222211110          11222


Q ss_pred             hhhCCCCCCCcEEEEeeecCCCCCchhhh-cCCCccEEEeeCCCCCCCCCC-CCCCCccchhcccccccceeccccccCC
Q 014826          230 LEALRPPLDLKELEIQFNRGNTVFPSWMT-SLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGV  307 (418)
Q Consensus       230 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~  307 (418)
                      ...-..+.++..+.+.+. +.......+. .+++|+.+++.+|.....-.. +..|++|+.|++..+  ++.++...|  
T Consensus       195 ~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF--  269 (329)
T 3sb4_A          195 MKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF--  269 (329)
T ss_dssp             HHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT--
T ss_pred             hhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHh--
Confidence            222233456666666655 2222122222 477888888887754432222 777888888888775  666766543  


Q ss_pred             CCCccCCCCCccccccCCccc-ccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccE
Q 014826          308 ESDRHDSSSSSLVIIAFPKLK-SLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKR  385 (418)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~  385 (418)
                                    ..+++|+ .+.+.+  +++.+....       ...|++|+++++.++ .++.++. .+..+++|+.
T Consensus       270 --------------~~~~~L~~~l~l~~--~l~~I~~~a-------F~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          270 --------------SNCGRLAGTLELPA--SVTAIEFGA-------FMGCDNLRYVLATGD-KITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             --------------TTCTTCCEEEEECT--TCCEECTTT-------TTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCE
T ss_pred             --------------hCChhccEEEEEcc--cceEEchhh-------hhCCccCCEEEeCCC-ccCccchhhhcCCcchhh
Confidence                          3567777 777765  555554222       247888888888766 6777764 6777888887


Q ss_pred             EE
Q 014826          386 LW  387 (418)
Q Consensus       386 L~  387 (418)
                      |.
T Consensus       326 ly  327 (329)
T 3sb4_A          326 IY  327 (329)
T ss_dssp             EE
T ss_pred             hc
Confidence            75

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.36  E-value=8e-13  Score=123.18  Aligned_cols=126  Identities=18%  Similarity=0.083  Sum_probs=79.9

Q ss_pred             eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhc-cccccceeeeCCCCCccCc-hhhhcCCCCc
Q 014826           21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIK-KLVHLRYLNLRFPKIVKLP-ETLCELYNLE   98 (418)
Q Consensus        21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~   98 (418)
                      ++++++++.     ++.  +|..+  ...+++|+|++|.+.+..+..+. ++++|++|++++|.+..++ ..+..+++|+
T Consensus        21 ~~l~c~~~~-----l~~--iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           21 NILSCSKQQ-----LPN--VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             TEEECCSSC-----CSS--CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CEEEeCCCC-----cCc--cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence            567777765     443  33211  24577777777775544444455 6777777777777777665 4567777777


Q ss_pred             EEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecC
Q 014826           99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      +|++++|.+....+..+.++++|++|++++|.+....+..+..+++|+.|++.+|..
T Consensus        92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence            777777773333333567777777777777755555556666677777776655543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.36  E-value=6.6e-13  Score=107.15  Aligned_cols=112  Identities=24%  Similarity=0.243  Sum_probs=96.3

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      +.+|..+..+++|++|++++|.     +++  + ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.++.+
T Consensus        32 ~~~~~~~~~l~~L~~L~l~~n~-----l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~  103 (149)
T 2je0_A           32 GKLEGLTDEFEELEFLSTINVG-----LTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL  103 (149)
T ss_dssp             TBCCSCCTTCTTCCEEECTTSC-----CCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred             hHHHHHHhhcCCCcEEECcCCC-----CCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence            4688889999999999999998     444  2 4588999999999999997766888888899999999999999986


Q ss_pred             c--hhhhcCCCCcEEeccCccCcccCCh----hhhccccccEEeccC
Q 014826           88 P--ETLCELYNLEKLDISYCFNLKELPE----GIGKLINMKHLLNRG  128 (418)
Q Consensus        88 ~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~  128 (418)
                      +  ..+..+++|++|++++|. +...+.    .++.+++|++|++++
T Consensus       104 ~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          104 STIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence            5  778999999999999998 444544    688999999998863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.35  E-value=1.6e-12  Score=112.89  Aligned_cols=127  Identities=22%  Similarity=0.207  Sum_probs=103.7

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCC
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNL   97 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L   97 (418)
                      +-+.++.+++.     ++.  +|.  .-.++|++|++++|.+.+..+..+.++++|++|++++|.++.+| ..+..+++|
T Consensus        20 s~~~v~c~~~~-----l~~--ip~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L   90 (229)
T 3e6j_A           20 SGTTVDCRSKR-----HAS--VPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL   90 (229)
T ss_dssp             ETTEEECTTSC-----CSS--CCS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             eCCEeEccCCC-----cCc--cCC--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence            35678888876     443  332  22489999999999977666777899999999999999999887 456899999


Q ss_pred             cEEeccCccCcccCC-hhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           98 EKLDISYCFNLKELP-EGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        98 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      ++|++++|. +..++ ..+..+++|++|++++|.+ ..+|..+..+++|++|++.+|...
T Consensus        91 ~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           91 TVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CSCCTTGGGCTTCSEEECCSSCCC
T ss_pred             CEEECCCCc-CCccChhHhCcchhhCeEeccCCcc-cccCcccccCCCCCEEECCCCcCC
Confidence            999999998 44554 4578999999999999954 588989999999999999887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.33  E-value=3.2e-12  Score=117.52  Aligned_cols=267  Identities=11%  Similarity=0.067  Sum_probs=154.3

Q ss_pred             CCCccEEecCCCCCcHHHHHhhcc-ccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCC-hhhhc-------
Q 014826           47 STSLRALDVSQVSLPTEILRNIKK-LVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELP-EGIGK-------  117 (418)
Q Consensus        47 ~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~-------  117 (418)
                      +.+++.|.++++--..++ ..+.. +++|++|++++|.+..+...-..++.++.+.+..+.    +| ..+.+       
T Consensus        24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF----VPAYAFSNVVNGVTK   98 (329)
T ss_dssp             HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE----ECTTTTEEEETTEEE
T ss_pred             hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccc----cCHHHhccccccccc
Confidence            446888888876312233 23444 788999999998877221111122223444444432    22 23556       


Q ss_pred             -cccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhh
Q 014826          118 -LINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRL  196 (418)
Q Consensus       118 -l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~  196 (418)
                       |++|++|.+.+ .....-...|..|++|+.+++..+....       -....+.++                       
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-------i~~~aF~~~-----------------------  147 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-------LLPEALADS-----------------------  147 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-------ECTTSSCTT-----------------------
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-------cchhhhcCC-----------------------
Confidence             89999999988 3544444568889999998887654320       011112222                       


Q ss_pred             hcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCc-EEEEeeecCCCCCchhhh----cCCCccEEEeeCC
Q 014826          197 ELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLK-ELEIQFNRGNTVFPSWMT----SLTNLKSLGLSLC  271 (418)
Q Consensus       197 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~  271 (418)
                           .++..+........       ..........+..+..|+ .+.+...   ..++..+.    ...+++.+.+.+.
T Consensus       148 -----~~l~~l~~~~~~~~-------~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~  212 (329)
T 3sb4_A          148 -----VTAIFIPLGSSDAY-------RFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK  212 (329)
T ss_dssp             -----TCEEEECTTCTHHH-------HTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC
T ss_pred             -----CceEEecCcchhhh-------hccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeee
Confidence                 22222221110000       000000111233456666 4555432   22333322    3567788888776


Q ss_pred             CCCCCCCCC-CCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCC
Q 014826          272 ENCEQLPPL-GKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGN  350 (418)
Q Consensus       272 ~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  350 (418)
                      -.......+ ..+++|+.+++.+|. ++.++...|                ..+++|+++++.+  +++.++...     
T Consensus       213 l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF----------------~~~~~L~~l~l~~--ni~~I~~~a-----  268 (329)
T 3sb4_A          213 LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTF----------------AQKKYLLKIKLPH--NLKTIGQRV-----  268 (329)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTT----------------TTCTTCCEEECCT--TCCEECTTT-----
T ss_pred             ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhh----------------hCCCCCCEEECCc--ccceehHHH-----
Confidence            322111111 237999999999887 888887654                4789999999986  366665333     


Q ss_pred             cccccCCCcc-EEEEecCCCCCcCC-ccccCCCCccEEEeccCC
Q 014826          351 TVINIMPHLS-SLVIDSCYELKALP-DHIHQTTTLKRLWILNCG  392 (418)
Q Consensus       351 ~~~~~~~~L~-~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~  392 (418)
                        ...|++|+ ++.+.+  .++.++ ..+..|++|+.|++.++.
T Consensus       269 --F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          269 --FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             --TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred             --hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc
Confidence              35789999 999988  688876 478889999999997765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.32  E-value=2.3e-12  Score=111.22  Aligned_cols=128  Identities=17%  Similarity=0.092  Sum_probs=102.3

Q ss_pred             eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHH-HhhccccccceeeeCCCCCccCch-hhhcCCCC
Q 014826           20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEIL-RNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNL   97 (418)
Q Consensus        20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L   97 (418)
                      -++++++++.     ++.  +|..+  ...+++|++++|.+.+..+ ..+.++++|++|++++|.++.++. .+..+++|
T Consensus        13 ~~~l~~s~n~-----l~~--iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A           13 GTTVDCSNQK-----LNK--IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             TTEEECCSSC-----CSS--CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCEeEeCCCC-----ccc--CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            3689999987     444  33322  3467899999998655433 347889999999999999987764 78899999


Q ss_pred             cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      ++|++++|.+....+..++++++|++|++++|.+....|..+..+++|++|++.+|...
T Consensus        84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence            99999999955545556889999999999999777777888999999999999877654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.29  E-value=2e-12  Score=109.05  Aligned_cols=127  Identities=16%  Similarity=0.099  Sum_probs=91.7

Q ss_pred             eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHH-hhccccccceeeeCCCCCccC-chhhhcCCCCc
Q 014826           21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILR-NIKKLVHLRYLNLRFPKIVKL-PETLCELYNLE   98 (418)
Q Consensus        21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~   98 (418)
                      ++++++++.     ++.  +|..+  ..+|++|++++|.+.+..+. .+.++++|++|++++|.++.+ |..+..+++|+
T Consensus        11 ~~l~~s~~~-----l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A           11 TTVDCTGRG-----LKE--IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TEEECTTSC-----CSS--CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEEEcCCCC-----cCc--CccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            677888876     443  33322  23788888888875443332 367788888888888887766 56777888888


Q ss_pred             EEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +|++++|.+....+..++++++|++|++++|.+.+..|..+..+++|++|++.+|...
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            8888888855545555778888888888888776667777888888888888777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.28  E-value=6e-13  Score=134.96  Aligned_cols=113  Identities=27%  Similarity=0.297  Sum_probs=69.4

Q ss_pred             HHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhcccc
Q 014826           41 EELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLIN  120 (418)
Q Consensus        41 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  120 (418)
                      +..+..+..|++|+|++|.+. .+|..+.++++|++|+|++|.++.+|..+..+++|++|+|++|. +..+|..++++++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence            445666666777777666633 44445556666777777766666666666666677777777666 3366666666666


Q ss_pred             ccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826          121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       121 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      |++|++++|. +..+|..++++++|++|++.+|...
T Consensus       295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence            7777776663 3456666666666666666665544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.27  E-value=3.7e-12  Score=118.65  Aligned_cols=140  Identities=19%  Similarity=0.157  Sum_probs=110.9

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhc-cCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFR-ESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      .++|..+..  .++.|+|++|.     ++. ..+..+. .+++|++|++++|.+.+..+..|.++++|++|++++|.++.
T Consensus        31 ~~iP~~~~~--~l~~L~Ls~N~-----l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~  102 (361)
T 2xot_A           31 PNVPQSLPS--YTALLDLSHNN-----LSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT  102 (361)
T ss_dssp             SSCCSSCCT--TCSEEECCSSC-----CCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CccCccCCC--CCCEEECCCCC-----CCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence            457765553  68999999998     444 2234455 89999999999999765555678999999999999999998


Q ss_pred             Cc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccc----ccccccceecceeecCC
Q 014826           87 LP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGI----GRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        87 l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~  156 (418)
                      ++ ..+..+++|++|++++|.+....+..+.++++|++|++++|.+ ..+|..+    ..+++|+.|++.+|...
T Consensus       103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            76 4688999999999999996555577899999999999999954 4455543    57899999999877654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.25  E-value=4.9e-12  Score=106.69  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=100.9

Q ss_pred             cCCCCCccccccceeeEEeecCCCCCCCCccHHHHH--HHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC
Q 014826            6 KGASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVE--ELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK   83 (418)
Q Consensus         6 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   83 (418)
                      +-+++|..+..  +|++|++++|.     ++.  ++  ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus        19 ~l~~ip~~~~~--~l~~L~l~~n~-----i~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           19 GLKEIPRDIPL--HTTELLLNDNE-----LGR--ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             CCSSCCSCCCT--TCSEEECCSCC-----CCS--BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CcCcCccCCCC--CCCEEECCCCc-----CCc--cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            34567876655  99999999998     444  22  247899999999999999777668889999999999999999


Q ss_pred             CccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCccccc
Q 014826           84 IVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRY  134 (418)
Q Consensus        84 l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  134 (418)
                      ++.++ ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+...
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            99776 4588999999999999997777788899999999999999976544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=104.43  Aligned_cols=126  Identities=16%  Similarity=0.144  Sum_probs=87.8

Q ss_pred             eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcE
Q 014826           21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEK   99 (418)
Q Consensus        21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~   99 (418)
                      ++++++++.     ++.  +|..  -.++|++|++++|.+. .+|..+.++++|++|++++|.++.++ ..+..+++|++
T Consensus        13 ~~l~~~~~~-----l~~--ip~~--~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           13 TVVRCSNKG-----LKV--LPKG--IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TEEECTTSC-----CSS--CCSC--CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEcCCCC-----CCc--CCCC--CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            567777776     333  3321  2357888888888743 55667788888888888888887665 45778888888


Q ss_pred             EeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826          100 LDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       100 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      |++++|.+....+..+.++++|++|++++|.+....+..+..+++|+.|++.+|...
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            888888844444456778888888888888554433345777888888887776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.21  E-value=5.7e-14  Score=119.30  Aligned_cols=112  Identities=22%  Similarity=0.210  Sum_probs=84.4

Q ss_pred             HHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccc
Q 014826           40 VEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLI  119 (418)
Q Consensus        40 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  119 (418)
                      ++..+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++.+|..+..+++|++|++++|. +..+| .++.++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~  115 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCC
Confidence            44457888888888888887443 55 6778888888888888888888777777888888888887 44455 577888


Q ss_pred             cccEEeccCCcccccCC--cccccccccceecceeecCC
Q 014826          120 NMKHLLNRGTNSLRYMP--VGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       120 ~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +|++|++++|.+.. ++  ..+..+++|++|++.+|...
T Consensus       116 ~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          116 NLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence            88888888885433 22  35777888888888777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.21  E-value=2.1e-11  Score=102.85  Aligned_cols=116  Identities=18%  Similarity=0.242  Sum_probs=97.0

Q ss_pred             CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826            7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      -.++|..+.  ++|++|++++|.     ++.  ++..|..+++|++|++++|.+.+..+..|.++++|++|++++|.++.
T Consensus        22 l~~ip~~~~--~~l~~L~L~~n~-----i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           22 LKVLPKGIP--RDVTELYLDGNQ-----FTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSC-----CCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCcCCCCCC--CCCCEEECCCCc-----Cch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            345776654  589999999998     554  55668999999999999999766556678999999999999999998


Q ss_pred             Cc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCccc
Q 014826           87 LP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSL  132 (418)
Q Consensus        87 l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~  132 (418)
                      ++ ..+..+++|++|++++|. +..+|. .+..+++|+.|++++|...
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             eCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence            76 468899999999999999 555654 5889999999999998654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.21  E-value=1.6e-11  Score=124.59  Aligned_cols=123  Identities=21%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE   89 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~   89 (418)
                      .|..|..++.|+.|+|++|.     +..  ++..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++.+|.
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~-----l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~  287 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQ-----IFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPA  287 (727)
T ss_dssp             ------CCCCCCEEECTTSC-----CSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCS
T ss_pred             ChhhhccCCCCcEEECCCCC-----CCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccCh
Confidence            35556677777777777776     332  3333446777777777777644 566666777777777777777777776


Q ss_pred             hhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccccc
Q 014826           90 TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGR  141 (418)
Q Consensus        90 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  141 (418)
                      .+..+++|++|+|++|. ++.+|..++.+++|++|++++|.+.+.+|..+..
T Consensus       288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            67777777777777776 4566766777777777777777665555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.19  E-value=2.3e-11  Score=119.61  Aligned_cols=139  Identities=17%  Similarity=0.171  Sum_probs=112.3

Q ss_pred             CCCCCccccccceeeEEe-ecCCCCCCCCccHHHHHH------Hhcc--CCCccEEecCCCCCcHHHHHhhcccccccee
Q 014826            7 GASLPVSTRRVKRMRTLL-ISASGSDHSSLNAEIVEE------LFRE--STSLRALDVSQVSLPTEILRNIKKLVHLRYL   77 (418)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~------~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   77 (418)
                      .+.+|..++.+++|++|+ ++.+.     +.+  ++.      .+..  ...|++|++++|.+.+ +|. +..+++|++|
T Consensus       398 ~~~~~~~l~~l~~L~~L~~l~~n~-----~~~--L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L  468 (567)
T 1dce_A          398 LLYEKETLQYFSTLKAVDPMRAAY-----LDD--LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHL  468 (567)
T ss_dssp             GGGHHHHHHHHHHHHHHCGGGHHH-----HHH--HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEE
T ss_pred             ccCCHHHHHHHHhcccCcchhhcc-----cch--hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEe
Confidence            345677888999999998 56553     222  111      1111  2369999999998554 665 8999999999


Q ss_pred             eeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccC-CcccccccccceecceeecCC
Q 014826           78 NLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYM-PVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        78 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      ++++|.++.+|..+..+++|+.|++++|. +..+| .++++++|+.|++++|.+.+.. |..+..+++|+.|++.+|...
T Consensus       469 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          469 DLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             ECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            99999999999999999999999999999 55588 7999999999999999766655 899999999999999988765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.17  E-value=4.2e-11  Score=99.53  Aligned_cols=129  Identities=19%  Similarity=0.107  Sum_probs=86.5

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCC
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNL   97 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L   97 (418)
                      +.+.++++++.     ++.  +|.  .-.++|++|+++++.+.+..+..+.++++|++|++++|.++.++. .+..+++|
T Consensus         8 ~~~~l~~~~~~-----l~~--~p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (177)
T 2o6r_A            8 SGTEIRCNSKG-----LTS--VPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL   78 (177)
T ss_dssp             ETTEEECCSSC-----CSS--CCT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCEEEecCCC-----Ccc--CCC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc
Confidence            34667777776     333  221  223678888888887554444456778888888888888877764 35778888


Q ss_pred             cEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           98 EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        98 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      ++|++++|.+....+..++.+++|++|++++|.+....+..+..+++|++|++.+|...
T Consensus        79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            88888888744333334677888888888888554333334567788888887776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.14  E-value=4.5e-11  Score=99.32  Aligned_cols=119  Identities=22%  Similarity=0.279  Sum_probs=94.5

Q ss_pred             CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826            7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      -.++|..+.  ++|++|++++|.     ++. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus        19 l~~~p~~~~--~~l~~L~l~~n~-----l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~   90 (177)
T 2o6r_A           19 LTSVPTGIP--SSATRLELESNK-----LQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS   90 (177)
T ss_dssp             CSSCCTTCC--TTCSEEECCSSC-----CCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CccCCCCCC--CCCcEEEeCCCc-----ccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc
Confidence            345665444  699999999998     443 233457889999999999998665444557899999999999999998


Q ss_pred             Cch-hhhcCCCCcEEeccCccCcccCChh-hhccccccEEeccCCccccc
Q 014826           87 LPE-TLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNRGTNSLRY  134 (418)
Q Consensus        87 l~~-~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~  134 (418)
                      ++. .+..+++|++|++++|. +..+|.. +..+++|++|++++|.+...
T Consensus        91 ~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           91 LPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            875 46889999999999998 4566654 68899999999999965543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.14  E-value=5e-10  Score=105.50  Aligned_cols=309  Identities=13%  Similarity=0.020  Sum_probs=163.1

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhh
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETL   91 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~   91 (418)
                      .|.+|.+|+.+.|...      ++. +-...|.+|.+|+.+++..+- .......|.+|..|+.+.+..+ +..+. ..+
T Consensus        66 AF~~c~~L~~i~lp~~------i~~-I~~~aF~~c~~L~~i~lp~~l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST------VRE-IGEFAFENCSKLEIINIPDSV-KMIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             TTTTCTTEEEEECCTT------CCE-ECTTTTTTCTTCCEECCCTTC-CEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             HhhCCCCceEEEeCCC------ccC-cchhHhhCCCCCcEEEeCCCc-eEccchhhcccccchhhcccCc-eeeecceee
Confidence            4778888888888643      222 123447888888888886541 2222345777888887666543 22222 334


Q ss_pred             hcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCcccccccccc
Q 014826           92 CELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLK  171 (418)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  171 (418)
                      ..+..+..........+  -..++.+|.+|+.+.+.++ ....-...+..+.+|+.+.+..+..        .-.-..+.
T Consensus       137 ~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~--------~I~~~~F~  205 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLK--------IIRDYCFA  205 (394)
T ss_dssp             TTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCC--------EECTTTTT
T ss_pred             ecccccccccCcccccc--chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCce--------EeCchhhc
Confidence            44443333322222211  1235777888888888765 2222334566778888776643211        01112233


Q ss_pred             CCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCC
Q 014826          172 NLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNT  251 (418)
Q Consensus       172 ~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  251 (418)
                      ++..|+.+.......  ..+.    ....+..|+.+.+.....            ......+..+..++.+.+..+ ...
T Consensus       206 ~~~~L~~i~~~~~~~--~i~~----~~~~~~~l~~i~ip~~~~------------~i~~~~f~~~~~l~~~~~~~~-~~~  266 (394)
T 4fs7_A          206 ECILLENMEFPNSLY--YLGD----FALSKTGVKNIIIPDSFT------------ELGKSVFYGCTDLESISIQNN-KLR  266 (394)
T ss_dssp             TCTTCCBCCCCTTCC--EECT----TTTTTCCCCEEEECTTCC------------EECSSTTTTCSSCCEEEECCT-TCE
T ss_pred             cccccceeecCCCce--Eeeh----hhcccCCCceEEECCCce------------ecccccccccccceeEEcCCC-cce
Confidence            333444333222111  0001    112345677766643321            111234556777787777665 333


Q ss_pred             CCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccc
Q 014826          252 VFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLR  331 (418)
Q Consensus       252 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  331 (418)
                      .....+..+..++.+........+  ..+..+.+|+.+.+..+  ++.++...|                ..+.+|+.+.
T Consensus       267 i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF----------------~~c~~L~~i~  326 (394)
T 4fs7_A          267 IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAF----------------ESCTSLVSID  326 (394)
T ss_dssp             ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTT----------------TTCTTCCEEC
T ss_pred             eeccccccccccceeccCceeecc--ccccccccccccccccc--cceechhhh----------------cCCCCCCEEE
Confidence            334455567777777665442111  12556777777777543  555655443                3566777776


Q ss_pred             cccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccEEEeccC
Q 014826          332 IEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKRLWILNC  391 (418)
Q Consensus       332 l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c  391 (418)
                      +.+  +++.+...       ....|.+|+++.+..  .++.++. .+..|++|+.+.+...
T Consensus       327 lp~--~v~~I~~~-------aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          327 LPY--LVEEIGKR-------SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCT--TCCEECTT-------TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred             eCC--cccEEhHH-------hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence            642  34444322       223677777777754  3666553 5666777777777543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.13  E-value=3e-11  Score=100.29  Aligned_cols=114  Identities=17%  Similarity=0.049  Sum_probs=92.8

Q ss_pred             CCCCccccccc-eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826            8 ASLPVSTRRVK-RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus         8 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      .++|. +..+. +|++|++++|.     +++  + ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus        32 ~~i~~-~~~~~~~L~~L~Ls~N~-----l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  102 (176)
T 1a9n_A           32 PVIEN-LGATLDQFDAIDFSDNE-----IRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE  102 (176)
T ss_dssp             CSCCC-GGGGTTCCSEEECCSSC-----CCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred             chhHH-hhhcCCCCCEEECCCCC-----CCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc
Confidence            34554 44444 99999999998     554  3 348899999999999999654323345889999999999999998


Q ss_pred             Cch--hhhcCCCCcEEeccCccCcccCChh----hhccccccEEeccCCcc
Q 014826           87 LPE--TLCELYNLEKLDISYCFNLKELPEG----IGKLINMKHLLNRGTNS  131 (418)
Q Consensus        87 l~~--~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~  131 (418)
                      +|.  .+..+++|++|++++|. +..+|..    ++.+++|+.|++++|..
T Consensus       103 ~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          103 LGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             GGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             chhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            886  78899999999999999 5567764    88999999999998843

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.02  E-value=3.1e-12  Score=108.54  Aligned_cols=109  Identities=21%  Similarity=0.211  Sum_probs=83.9

Q ss_pred             hccCCCccEEecCCCCCcHH------HHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhc
Q 014826           44 FRESTSLRALDVSQVSLPTE------ILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGK  117 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~------~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  117 (418)
                      +.....++.++++.+.+.+.      +|..+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~   91 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAV   91 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhc
Confidence            45555555555555444333      3447888999999999999988888 78889999999999998 5578887888


Q ss_pred             cccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826          118 LINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       118 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +++|+.|++++|.+. .+| .+..+++|++|++.+|...
T Consensus        92 ~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A           92 ADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             HHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECC
T ss_pred             CCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCC
Confidence            899999999998544 355 5778889999998887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.96  E-value=2.5e-08  Score=93.69  Aligned_cols=261  Identities=9%  Similarity=0.063  Sum_probs=148.7

Q ss_pred             cCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCC-hhhhccccccE
Q 014826           46 ESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELP-EGIGKLINMKH  123 (418)
Q Consensus        46 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~  123 (418)
                      .+..++.+.+...- ...-..+|.++ +|+.+.+..+ ++.++ ..|.+ .+|+.+.+...  +..++ .++.+|.+|+.
T Consensus       111 ~~~~l~~i~ip~~i-~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPNSV-KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCTTC-CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECCcc-CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCe
Confidence            34566666665431 11112345554 5677766554 44444 23444 35777776652  33332 34666777777


Q ss_pred             EeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccc
Q 014826          124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKY  203 (418)
Q Consensus       124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~  203 (418)
                      +++..+. ...++.....+.+|+.+.+..+                                 +..   .....+..|++
T Consensus       185 l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~---------------------------------l~~---I~~~aF~~~~~  227 (401)
T 4fdw_A          185 ADLSKTK-ITKLPASTFVYAGIEEVLLPVT---------------------------------LKE---IGSQAFLKTSQ  227 (401)
T ss_dssp             EECTTSC-CSEECTTTTTTCCCSEEECCTT---------------------------------CCE---ECTTTTTTCTT
T ss_pred             eecCCCc-ceEechhhEeecccCEEEeCCc---------------------------------hhe---ehhhHhhCCCC
Confidence            7776652 2333333333455555544211                                 000   00113445566


Q ss_pred             ccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCC----CCC-
Q 014826          204 LSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCE----QLP-  278 (418)
Q Consensus       204 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~-  278 (418)
                      |+.+.+..+-.            ..-...+.. .+|+.+.+..+ +......++.+|++|+.+.+.++....    .++ 
T Consensus       228 L~~l~l~~~l~------------~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~  293 (401)
T 4fdw_A          228 LKTIEIPENVS------------TIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP  293 (401)
T ss_dssp             CCCEECCTTCC------------EECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT
T ss_pred             CCEEecCCCcc------------Ccccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECH
Confidence            66666654311            011122333 57888888544 444455677789999999998876541    122 


Q ss_pred             -CCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCC
Q 014826          279 -PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMP  357 (418)
Q Consensus       279 -~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  357 (418)
                       .+..|++|+.+++...  ++.++...|                ..+++|+.+.+..  +++.+....       ...+ 
T Consensus       294 ~aF~~c~~L~~l~l~~~--i~~I~~~aF----------------~~c~~L~~l~lp~--~l~~I~~~a-------F~~~-  345 (401)
T 4fdw_A          294 YCLEGCPKLARFEIPES--IRILGQGLL----------------GGNRKVTQLTIPA--NVTQINFSA-------FNNT-  345 (401)
T ss_dssp             TTTTTCTTCCEECCCTT--CCEECTTTT----------------TTCCSCCEEEECT--TCCEECTTS-------SSSS-
T ss_pred             HHhhCCccCCeEEeCCc--eEEEhhhhh----------------cCCCCccEEEECc--cccEEcHHh-------CCCC-
Confidence             3788999999999843  777776654                3678899888853  465554332       2467 


Q ss_pred             CccEEEEecCCCCCcCC-ccccCC-CCccEEEeccCC
Q 014826          358 HLSSLVIDSCYELKALP-DHIHQT-TTLKRLWILNCG  392 (418)
Q Consensus       358 ~L~~L~l~~c~~l~~~~-~~~~~~-~~L~~L~l~~c~  392 (418)
                      +|+++.+.++ .+..++ ..+..+ .+++.|.+....
T Consensus       346 ~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          346 GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence            9999999988 455544 344445 478899987754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.96  E-value=6e-10  Score=103.74  Aligned_cols=28  Identities=21%  Similarity=0.147  Sum_probs=15.0

Q ss_pred             hhCCCCCCCcEEEEeeecCCCCCchhhh
Q 014826          231 EALRPPLDLKELEIQFNRGNTVFPSWMT  258 (418)
Q Consensus       231 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~  258 (418)
                      ..+..+++|++|++++|.+.+.....+.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             HHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            3344456666666666655544444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.95  E-value=5.7e-10  Score=91.90  Aligned_cols=103  Identities=19%  Similarity=0.215  Sum_probs=65.5

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCC
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNL   97 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L   97 (418)
                      ..++++++++.     ++.  +|..+  .++|++|++++|.+.+..+..+.++++|++|++++|.++.+|. .+..+++|
T Consensus        10 ~~~~l~~s~n~-----l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L   80 (170)
T 3g39_A           10 SGTTVDCSGKS-----LAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL   80 (170)
T ss_dssp             ETTEEECTTSC-----CSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCEEEeCCCC-----cCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence            45667777776     333  33212  3667777777777555445566777777777777777776664 34677777


Q ss_pred             cEEeccCccCcccCCh-hhhccccccEEeccCCcc
Q 014826           98 EKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNS  131 (418)
Q Consensus        98 ~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~  131 (418)
                      ++|++++|. +..++. .+..+++|++|++++|.+
T Consensus        81 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           81 TQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            777777776 334443 466777777777777644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.94  E-value=7.5e-10  Score=91.50  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=69.1

Q ss_pred             eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchh-hhcCCCCc
Q 014826           20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET-LCELYNLE   98 (418)
Q Consensus        20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~   98 (418)
                      -+.++++++.     ++.  +|..+  .++|++|++++|.+.+..|..+.++++|++|++++|.++.+|.. +..+++|+
T Consensus        14 ~~~l~~~~n~-----l~~--iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~   84 (174)
T 2r9u_A           14 QTLVNCQNIR-----LAS--VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT   84 (174)
T ss_dssp             SSEEECCSSC-----CSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcEEEeCCCC-----CCc--cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhh
Confidence            3667777776     333  33212  26778888888776555566677778888888888877777643 46777888


Q ss_pred             EEeccCccCcccCCh-hhhccccccEEeccCCcc
Q 014826           99 KLDISYCFNLKELPE-GIGKLINMKHLLNRGTNS  131 (418)
Q Consensus        99 ~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~  131 (418)
                      +|++++|. +..+|. .++.+++|++|++++|.+
T Consensus        85 ~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           85 QLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             EEECCCCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence            88888777 444554 377777788888777743

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.93  E-value=3.1e-09  Score=99.91  Aligned_cols=62  Identities=8%  Similarity=0.049  Sum_probs=30.8

Q ss_pred             hCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccc
Q 014826          232 ALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMS  295 (418)
Q Consensus       232 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  295 (418)
                      .+..|++|+.+.+..+ +......++.+|.+|+.+.+..+-..-.-..+..+ +|+.+++.++.
T Consensus       295 aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          295 CLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSS
T ss_pred             HhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCC
Confidence            4455666666666532 33333344556666666666444111111125555 66666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.93  E-value=5.8e-10  Score=103.83  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=108.6

Q ss_pred             cceeeEEeecCCCCCCCCccHH---HHHHHhcc-CCCccEEecCCCCCcHHHHHh-hccccccceeeeCCCCCccCc---
Q 014826           17 VKRMRTLLISASGSDHSSLNAE---IVEELFRE-STSLRALDVSQVSLPTEILRN-IKKLVHLRYLNLRFPKIVKLP---   88 (418)
Q Consensus        17 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~---   88 (418)
                      .+.|++|+|++|.     ++..   .+...+.. ..+|++|+|++|.+.+..... ...+++|++|++++|.++...   
T Consensus        71 ~~~L~~L~Ls~n~-----l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           71 LSSLRQLNLAGVR-----MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             HTTCCEEECTTSC-----CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             HhhCCEEEecCCC-----CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            4579999999998     4442   24444443 369999999999876654333 355788999999999887332   


Q ss_pred             --hhh-hcCCCCcEEeccCccCcc----cCChhhhccccccEEeccCCccccc----CCcccccccccceecceeecCCC
Q 014826           89 --ETL-CELYNLEKLDISYCFNLK----ELPEGIGKLINMKHLLNRGTNSLRY----MPVGIGRLTGLRTLGEFRVSAGG  157 (418)
Q Consensus        89 --~~~-~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~  157 (418)
                        ..+ ...++|+.|++++|.+..    .++..+..+++|++|++++|.+...    ++..+...++|++|++.+|....
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence              223 246889999999998433    2444567788999999999965432    35566777899999998887651


Q ss_pred             CCCCccccccccccCCcccccccccccC
Q 014826          158 DVDGRKACRLESLKNLEHLQVCGIRRLG  185 (418)
Q Consensus       158 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~  185 (418)
                      ..   .......+...+.|+.+++....
T Consensus       226 ~g---~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          226 TA---ALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HH---HHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HH---HHHHHHHHHhCCCCCEEeccCCC
Confidence            00   11222334455677777776554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.92  E-value=1.8e-09  Score=88.82  Aligned_cols=104  Identities=23%  Similarity=0.198  Sum_probs=83.7

Q ss_pred             CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEec
Q 014826           49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLN  126 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l  126 (418)
                      ..++++++++.+ ..+|..+  .++|++|++++|.++.+ |..+..+++|++|++++|. +..++. .+.++++|++|++
T Consensus        10 ~~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence            457899999884 4455444  37899999999999977 5678899999999999999 445554 4689999999999


Q ss_pred             cCCcccccCCcccccccccceecceeecCC
Q 014826          127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      ++|.+....+..+..+++|++|++.+|...
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            999665544556889999999999888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.88  E-value=2.9e-09  Score=87.96  Aligned_cols=103  Identities=18%  Similarity=0.201  Sum_probs=82.9

Q ss_pred             ccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcEEeccCccCcccCChh-hhccccccEEecc
Q 014826           50 LRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYCFNLKELPEG-IGKLINMKHLLNR  127 (418)
Q Consensus        50 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~  127 (418)
                      -+.++++++. .+.+|..+.  ++|++|++++|.+..+ |..+..+++|++|++++|. +..+|.. ++++++|++|+++
T Consensus        14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence            4789999988 455665443  7899999999999877 5678899999999999998 5556654 6889999999999


Q ss_pred             CCcccccCCcccccccccceecceeecCC
Q 014826          128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +|.+....+..+..+++|++|++.+|.+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99655444445889999999999888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.87  E-value=4.1e-08  Score=92.37  Aligned_cols=287  Identities=9%  Similarity=0.016  Sum_probs=168.2

Q ss_pred             HHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhcccc
Q 014826           42 ELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLIN  120 (418)
Q Consensus        42 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  120 (418)
                      ..|.+|.+|+.+.+..+ +......+|.+|.+|+.+++..+ ++.++ ..+.++.+|+.+.+...- ...-..++.++..
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~~~~  141 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTTCCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeecccc
Confidence            34778888888888654 22222345788888888888654 44444 456677777776665442 1111223444443


Q ss_pred             ccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCC
Q 014826          121 MKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDK  200 (418)
Q Consensus       121 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~  200 (418)
                      +........  ...-...+..|++|+.+.+.....        .-.-..+.++..|+.+.+...  +...   ....+..
T Consensus       142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~--------~I~~~~F~~c~~L~~i~l~~~--~~~I---~~~~F~~  206 (394)
T 4fs7_A          142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSME--------TLHNGLFSGCGKLKSIKLPRN--LKII---RDYCFAE  206 (394)
T ss_dssp             SEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC--------EECTTTTTTCTTCCBCCCCTT--CCEE---CTTTTTT
T ss_pred             cccccCccc--cccchhhhcccCCCcEEecCCccc--------eeccccccCCCCceEEEcCCC--ceEe---Cchhhcc
Confidence            333322222  112234577889999887743221        112233455555555554322  1111   1224567


Q ss_pred             cccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCC
Q 014826          201 KKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPL  280 (418)
Q Consensus       201 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l  280 (418)
                      |..|+.+.+..+...             .......+..|+.+.+... ........+..+.+++.+.+..+...-....+
T Consensus       207 ~~~L~~i~~~~~~~~-------------i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F  272 (394)
T 4fs7_A          207 CILLENMEFPNSLYY-------------LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLF  272 (394)
T ss_dssp             CTTCCBCCCCTTCCE-------------ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTT
T ss_pred             ccccceeecCCCceE-------------eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeecccc
Confidence            788888877554321             1223345678999988654 33333445668999999999877443333346


Q ss_pred             CCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCcc
Q 014826          281 GKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLS  360 (418)
Q Consensus       281 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~  360 (418)
                      ..+..++.+......    ++...                ...+.+|+.+.+.+  +++.+...       ....|.+|+
T Consensus       273 ~~~~~l~~~~~~~~~----i~~~~----------------F~~~~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~  323 (394)
T 4fs7_A          273 YNCSGLKKVIYGSVI----VPEKT----------------FYGCSSLTEVKLLD--SVKFIGEE-------AFESCTSLV  323 (394)
T ss_dssp             TTCTTCCEEEECSSE----ECTTT----------------TTTCTTCCEEEECT--TCCEECTT-------TTTTCTTCC
T ss_pred             ccccccceeccCcee----ecccc----------------cccccccccccccc--ccceechh-------hhcCCCCCC
Confidence            777888777665432    33332                33677888887753  45554422       234789999


Q ss_pred             EEEEecCCCCCcCCc-cccCCCCccEEEeccC
Q 014826          361 SLVIDSCYELKALPD-HIHQTTTLKRLWILNC  391 (418)
Q Consensus       361 ~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c  391 (418)
                      +++|.+  .++.++. .+..|++|+.+.+..+
T Consensus       324 ~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          324 SIDLPY--LVEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             EECCCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred             EEEeCC--cccEEhHHhccCCCCCCEEEECcc
Confidence            999964  4777764 6778999999998654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=1.5e-08  Score=84.47  Aligned_cols=111  Identities=14%  Similarity=0.066  Sum_probs=55.7

Q ss_pred             ccccceeeEEeecCC-CCCCCCccHHH---HHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc
Q 014826           14 TRRVKRMRTLLISAS-GSDHSSLNAEI---VEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV   85 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~-~~~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~   85 (418)
                      +..++.|++|+|++| .     +++..   +...+...++|++|+|++|.+.+.    +...+...++|++|++++|.++
T Consensus        32 l~~~~~L~~L~L~~n~~-----i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMN-----IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HTTCTTCCEEECTTCTT-----CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCCCCEEEecCCCC-----CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            345556666666665 4     33322   334445555666666666654433    2233344455666666666655


Q ss_pred             c-----CchhhhcCCCCcEEec--cCccCccc----CChhhhccccccEEeccCC
Q 014826           86 K-----LPETLCELYNLEKLDI--SYCFNLKE----LPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        86 ~-----l~~~~~~l~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~  129 (418)
                      .     +...+...++|++|++  ++|.+...    +...+...++|++|++++|
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            2     3344455555666666  45553222    2223334455666666555

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.67  E-value=3.1e-07  Score=86.35  Aligned_cols=108  Identities=15%  Similarity=0.146  Sum_probs=55.5

Q ss_pred             hhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccc
Q 014826          256 WMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGL  335 (418)
Q Consensus       256 ~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  335 (418)
                      ++..+.+|+.+.+......-.-..+..+++|+.+.+...  ++.++...|                ..+.+|+.+.+.. 
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF----------------~~c~~L~~i~lp~-  320 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESVF----------------AGCISLKSIDIPE-  320 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT----------------TTCTTCCEEECCT-
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCCc--ccccCceee----------------cCCCCcCEEEeCC-
Confidence            444566666666654432212223555666666666422  445554432                2455666665542 


Q ss_pred             cccccccccccccCCcccccCCCccEEEEecCCCCCcCCc-cccCCCCccEEEeccCC
Q 014826          336 MELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPD-HIHQTTTLKRLWILNCG  392 (418)
Q Consensus       336 ~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~  392 (418)
                       +++.+..       .....|.+|+++.|-+  .++.++. .+..|++|+.+.+.++.
T Consensus       321 -~v~~I~~-------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          321 -GITQILD-------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             -TCCEECT-------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             -cccEehH-------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence             2333321       1123566677766643  3555543 45566777777666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.61  E-value=1.4e-07  Score=88.76  Aligned_cols=314  Identities=10%  Similarity=0.069  Sum_probs=166.5

Q ss_pred             cccccc-eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC---CcHHHHHhhccccccceeeeCCCCCccCc
Q 014826           13 STRRVK-RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS---LPTEILRNIKKLVHLRYLNLRFPKIVKLP   88 (418)
Q Consensus        13 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~l~~l~   88 (418)
                      .|.+|. .|+.+.+...      ++. +-...|.+|.+|+.+.+..+.   +......+|.+|.+|+.+.+..+ ++.++
T Consensus        58 aF~~~~~~L~sI~iP~s------vt~-Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT------VTE-IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             TTTTCCSCCCEEEECTT------CCE-ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             hccCCCCcCEEEEECCC------eeE-EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence            577885 6999999753      222 223458899999999986542   22222345788888988877654 44444


Q ss_pred             -hhhhcCCCCcEEeccCccCcccC-ChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826           89 -ETLCELYNLEKLDISYCFNLKEL-PEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR  166 (418)
Q Consensus        89 -~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  166 (418)
                       ..+..+.+|+.+.+....  ..+ ...+..+.+|+.+.+..+ . ..+.........|+.+.+.....        ...
T Consensus       130 ~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~-~-~~I~~~aF~~~~l~~i~ip~~~~--------~i~  197 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS-V-TAIEERAFTGTALTQIHIPAKVT--------RIG  197 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCCCSEEEECTTCC--------EEC
T ss_pred             hhhhhhhccccccccccee--eeecccceecccccccccccce-e-eEeccccccccceeEEEECCccc--------ccc
Confidence             457788999999986542  223 235677888888888765 2 22222222334566554422111        001


Q ss_pred             cccccCCcccccccccccCC--Ccch-------hhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCC
Q 014826          167 LESLKNLEHLQVCGIRRLGD--VSDV-------GEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPL  237 (418)
Q Consensus       167 ~~~l~~L~~L~~l~~~~~~~--~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  237 (418)
                      ...+..+..+..........  ....       .............+..+.+-..            ........+..|.
T Consensus       198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~------------v~~i~~~aF~~c~  265 (394)
T 4gt6_A          198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG------------VARIETHAFDSCA  265 (394)
T ss_dssp             TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT------------EEEECTTTTTTCS
T ss_pred             cchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc------------ceEcccceeeecc
Confidence            11122222222211110000  0000       0000000011122222222111            1111234566788


Q ss_pred             CCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCC--CCCCCCccchhcccccccceeccccccCCCCCccCCC
Q 014826          238 DLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLP--PLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSS  315 (418)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  315 (418)
                      .|+.+.+... .......++.++.+|+.+.+...  ...++  .+..|.+|+.+.|..+  ++.++...|          
T Consensus       266 ~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF----------  330 (394)
T 4gt6_A          266 YLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDAF----------  330 (394)
T ss_dssp             SCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT----------
T ss_pred             cccEEecccc-cceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhHh----------
Confidence            8888888655 33334456668889999888643  22233  3778899999988754  667776553          


Q ss_pred             CCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccC
Q 014826          316 SSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNC  391 (418)
Q Consensus       316 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c  391 (418)
                            ..|.+|+++.+-.  +++.+...       ....|++|+.+++.+..  ..+ ..+..+.+|+.+.+..+
T Consensus       331 ------~~C~~L~~i~ip~--sv~~I~~~-------aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          331 ------AGCEQLERIAIPS--SVTKIPES-------AFSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             ------TTCTTCCEEEECT--TCCBCCGG-------GGTTCTTCCEEEESSCH--HHH-HTCBCCCCC--------
T ss_pred             ------hCCCCCCEEEECc--ccCEEhHh-------HhhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeCCC
Confidence                  3678888887753  35554322       22478999999998752  112 23445788888877543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.60  E-value=4.1e-08  Score=90.63  Aligned_cols=101  Identities=18%  Similarity=0.237  Sum_probs=63.6

Q ss_pred             EEeecCC-CCCCCCccHHHHHHHhccCCCccEEecCC-CCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCc
Q 014826           22 TLLISAS-GSDHSSLNAEIVEELFRESTSLRALDVSQ-VSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLE   98 (418)
Q Consensus        22 ~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~   98 (418)
                      .++++++ .     ++.  +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+..++ ..|..+++|+
T Consensus        12 ~v~~~~~n~-----l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~   83 (347)
T 2ifg_A           12 GLRCTRDGA-----LDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (347)
T ss_dssp             CEECCSSCC-----CTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             EEEcCCCCC-----CCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence            4566665 4     454  555 67777777777775 6654444455677777777777777776554 4566777777


Q ss_pred             EEeccCccCcccCChhhhccccccEEeccCCcc
Q 014826           99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNS  131 (418)
Q Consensus        99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  131 (418)
                      +|+|++|. +..+|..+....+|+.|++.+|.+
T Consensus        84 ~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           84 RLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             EEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             EEeCCCCc-cceeCHHHcccCCceEEEeeCCCc
Confidence            77777777 444554333323377777777643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.57  E-value=8.5e-08  Score=78.06  Aligned_cols=98  Identities=11%  Similarity=0.087  Sum_probs=71.7

Q ss_pred             CCCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC-CcHHHHHhhcc----ccccceeeeCC
Q 014826            7 GASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS-LPTEILRNIKK----LVHLRYLNLRF   81 (418)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~----l~~L~~L~l~~   81 (418)
                      +..+|.....-..|+.||+++|.     +++.++.. +..|++|+.|+|++|. +++.....+..    +++|++|++++
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~-----Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~  123 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSC-----IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS  123 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCC-----CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES
T ss_pred             cccCCcccCCCceEeEEeCcCCC-----ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC
Confidence            44577655455689999999997     66655655 6899999999999985 55555555655    35799999998


Q ss_pred             CC-CccCc-hhhhcCCCCcEEeccCccCccc
Q 014826           82 PK-IVKLP-ETLCELYNLEKLDISYCFNLKE  110 (418)
Q Consensus        82 ~~-l~~l~-~~~~~l~~L~~L~l~~~~~~~~  110 (418)
                      |. ++.-. ..+..+++|++|++++|..+++
T Consensus       124 C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          124 CGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             CCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            86 66321 3466788999999998875554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.56  E-value=8.7e-08  Score=88.43  Aligned_cols=102  Identities=14%  Similarity=0.013  Sum_probs=82.4

Q ss_pred             cEEecCCC-CCcHHHHHhhccccccceeeeCC-CCCccCc-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826           51 RALDVSQV-SLPTEILRNIKKLVHLRYLNLRF-PKIVKLP-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR  127 (418)
Q Consensus        51 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  127 (418)
                      ..++.+++ . ...+|. +..+++|++|+|++ |.++.++ ..+..+++|+.|+|++|.+.+..|..++++++|++|+|+
T Consensus        11 ~~v~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34677777 6 556888 99999999999996 9999887 578899999999999999666566678999999999999


Q ss_pred             CCcccccCCcc-cccccccceecceeecCC
Q 014826          128 GTNSLRYMPVG-IGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       128 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~  156 (418)
                      +|.+. .+|.. +..++ |+.|++.+|.+.
T Consensus        89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            99655 45544 44444 999999888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=1e-07  Score=79.34  Aligned_cols=118  Identities=14%  Similarity=0.147  Sum_probs=90.0

Q ss_pred             HHHHHHhccCCCccEEecCCC-CCcHH----HHHhhccccccceeeeCCCCCc-----cCchhhhcCCCCcEEeccCccC
Q 014826           38 EIVEELFRESTSLRALDVSQV-SLPTE----ILRNIKKLVHLRYLNLRFPKIV-----KLPETLCELYNLEKLDISYCFN  107 (418)
Q Consensus        38 ~~~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~  107 (418)
                      +.+...+...+.|++|+|++| .+...    +...+...++|++|++++|.++     .+...+...++|++|++++|.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            357777899999999999999 86654    4455677889999999999987     3456677789999999999985


Q ss_pred             ccc----CChhhhccccccEEec--cCCccccc----CCcccccccccceecceeecC
Q 014826          108 LKE----LPEGIGKLINMKHLLN--RGTNSLRY----MPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus       108 ~~~----~~~~l~~l~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      ...    +...+...++|++|++  ++|.+...    +...+...++|++|++.+|..
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            443    3455677789999999  77855443    344556668888888876654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.54  E-value=1.7e-08  Score=82.21  Aligned_cols=94  Identities=13%  Similarity=0.131  Sum_probs=70.1

Q ss_pred             CccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEE
Q 014826          284 PSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLV  363 (418)
Q Consensus       284 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~  363 (418)
                      .+|++|++++|. +++.+...                +..+++|+.|++++|.++++..+......   ...+++|++|+
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~----------------L~~~~~L~~L~L~~C~~ItD~gL~~L~~~---~~~~~~L~~L~  120 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDH----------------MEGLQYVEKIRLCKCHYIEDGCLERLSQL---ENLQKSMLEME  120 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGG----------------GTTCSCCCEEEEESCTTCCHHHHHHHHTC---HHHHHHCCEEE
T ss_pred             ceEeEEeCcCCC-ccHHHHHH----------------hcCCCCCCEEEeCCCCccCHHHHHHHHhc---ccccCCCCEEE
Confidence            468888888887 54444332                45799999999999999998876655000   00146899999


Q ss_pred             EecCCCCCcCC-ccccCCCCccEEEeccCCchhcc
Q 014826          364 IDSCYELKALP-DHIHQTTTLKRLWILNCGPLGER  397 (418)
Q Consensus       364 l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~  397 (418)
                      |++|+++++.. ..+..+++|+.|+|++|+.+++.
T Consensus       121 Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             EESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             cCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence            99999998643 24567999999999999988864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.46  E-value=7.6e-08  Score=88.85  Aligned_cols=169  Identities=13%  Similarity=0.075  Sum_probs=100.7

Q ss_pred             CCccccccceeeEEeecCCCCCCCCc---cHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCcc
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSL---NAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVK   86 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (418)
                      +..+..++++|+.|.+.+.......+   ....+...+..+++|+.|+++++.-. .++. + .+++|+.|++..+.+..
T Consensus       131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD  207 (362)
T ss_dssp             HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred             HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence            34566788899999987653110011   10125566788999999999887311 1222 3 37899999999887652


Q ss_pred             C-chhhh--cCCCCcEEeccCc--cCcc-----cCChhh--hccccccEEeccCCcccccCCccc---ccccccceecce
Q 014826           87 L-PETLC--ELYNLEKLDISYC--FNLK-----ELPEGI--GKLINMKHLLNRGTNSLRYMPVGI---GRLTGLRTLGEF  151 (418)
Q Consensus        87 l-~~~~~--~l~~L~~L~l~~~--~~~~-----~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~  151 (418)
                      - ...+.  .+++|+.|+|..+  ...+     .+...+  ..+++|++|++.+|.+....+..+   ..+++|++|++.
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence            2 12333  7899999998632  1111     122222  247899999999886554332222   257899999997


Q ss_pred             eecCCCCCCCccccccccccCCccccccccccc
Q 014826          152 RVSAGGDVDGRKACRLESLKNLEHLQVCGIRRL  184 (418)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~  184 (418)
                      .+.....   ........++++++|+.+++..+
T Consensus       288 ~n~L~d~---G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          288 AGVLTDE---GARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             SSCCBHH---HHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCChH---HHHHHHhhcccCCcceEEECCCC
Confidence            6654310   00112333455667777766544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.44  E-value=1.1e-06  Score=82.09  Aligned_cols=82  Identities=10%  Similarity=0.127  Sum_probs=37.5

Q ss_pred             ccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhc
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCE   93 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~   93 (418)
                      +....+|+.+.+...      ++. +-...|.+|.+|+.+.+..+ +......+|.++ +|+.+.+..+ +..++.....
T Consensus        42 ~~~~~~i~~v~ip~~------vt~-Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~  111 (379)
T 4h09_A           42 YKDRDRISEVRVNSG------ITS-IGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ  111 (379)
T ss_dssp             GGGGGGCSEEEECTT------EEE-ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred             cccccCCEEEEeCCC------ccC-hHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceec
Confidence            445556666666542      332 12234666666666666543 121112335555 4555544332 3333322222


Q ss_pred             CCCCcEEeccCc
Q 014826           94 LYNLEKLDISYC  105 (418)
Q Consensus        94 l~~L~~L~l~~~  105 (418)
                      ..+|+.+.+...
T Consensus       112 ~~~L~~i~lp~~  123 (379)
T 4h09_A          112 GTDLDDFEFPGA  123 (379)
T ss_dssp             TCCCSEEECCTT
T ss_pred             cCCcccccCCCc
Confidence            235666666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.33  E-value=2.4e-07  Score=85.46  Aligned_cols=65  Identities=17%  Similarity=0.190  Sum_probs=40.6

Q ss_pred             CCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhc-CCCccEEEeeCCC
Q 014826          199 DKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTS-LTNLKSLGLSLCE  272 (418)
Q Consensus       199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~  272 (418)
                      ..+++|+.|+++.|.+..       .....+...+..+++|+.|+++.|.+++.....+.. +  ...++++.+.
T Consensus       276 ~~~~~L~~LdLs~n~L~d-------~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          276 DILPQLETMDISAGVLTD-------EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SSGGGCSEEECCSSCCBH-------HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ccCCCCCEEECCCCCCCh-------HHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            356899999998886521       001223444456799999999998766554444443 3  3446666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=2e-06  Score=75.38  Aligned_cols=80  Identities=19%  Similarity=0.150  Sum_probs=53.8

Q ss_pred             ccccccceeeeCCCCCccCc---hhhhcCCCCcEEeccCccCcccCChhhhccc--cccEEeccCCcccccCC-------
Q 014826           69 KKLVHLRYLNLRFPKIVKLP---ETLCELYNLEKLDISYCFNLKELPEGIGKLI--NMKHLLNRGTNSLRYMP-------  136 (418)
Q Consensus        69 ~~l~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~-------  136 (418)
                      .++++|+.|++++|.+..++   ..+..+++|+.|+|++|.+. .+ ..+..+.  +|++|++.+|.+.+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            46778888888888866543   55667888888888888733 33 2233333  78888888887665444       


Q ss_pred             cccccccccceecc
Q 014826          137 VGIGRLTGLRTLGE  150 (418)
Q Consensus       137 ~~l~~l~~L~~L~l  150 (418)
                      ..+..+++|+.|+-
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            23567788887763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.00  E-value=4e-05  Score=71.34  Aligned_cols=80  Identities=6%  Similarity=0.133  Sum_probs=49.2

Q ss_pred             hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccCCh-hhhccccc
Q 014826           44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKELPE-GIGKLINM  121 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L  121 (418)
                      +....+|+.+.+... +......+|.+|.+|+.+.+..+ ++.++ ..|.++ +|+.+.+..+  ...++. ++.. .+|
T Consensus        42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-CCC
T ss_pred             cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceecc-CCc
Confidence            556678888888754 12222356888999999998654 55555 345555 5777766543  333332 2443 378


Q ss_pred             cEEeccCC
Q 014826          122 KHLLNRGT  129 (418)
Q Consensus       122 ~~L~l~~~  129 (418)
                      +.+.+..+
T Consensus       116 ~~i~lp~~  123 (379)
T 4h09_A          116 DDFEFPGA  123 (379)
T ss_dssp             SEEECCTT
T ss_pred             ccccCCCc
Confidence            88887654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.94  E-value=5.4e-06  Score=72.60  Aligned_cols=62  Identities=18%  Similarity=0.078  Sum_probs=33.4

Q ss_pred             cCCCCcEEeccCccCcc--cCChhhhccccccEEeccCCcccccCCccccccc--ccceecceeecCC
Q 014826           93 ELYNLEKLDISYCFNLK--ELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLT--GLRTLGEFRVSAG  156 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~  156 (418)
                      .+++|+.|+|++|.+.+  .++..++.+++|+.|+|++|.+.+.  ..+..+.  +|+.|++.+|...
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence            46666666666666333  3334455666666666666644332  2233333  5666666655543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.63  E-value=0.00012  Score=60.58  Aligned_cols=90  Identities=16%  Similarity=0.195  Sum_probs=42.4

Q ss_pred             HHHHHhccCCCccEEecCCC-CCcHH----HHHhhccccccceeeeCCCCCc-----cCchhhhcCCCCcEEeccCccCc
Q 014826           39 IVEELFRESTSLRALDVSQV-SLPTE----ILRNIKKLVHLRYLNLRFPKIV-----KLPETLCELYNLEKLDISYCFNL  108 (418)
Q Consensus        39 ~~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~  108 (418)
                      .+...+.+-+.|+.|+|+++ .+.+.    +.+.+..-..|+.|+|++|.++     .+...+...+.|+.|+|++|.+.
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34444455555555555553 43322    2333444445555555555544     23344445555555665555533


Q ss_pred             cc----CChhhhccccccEEeccC
Q 014826          109 KE----LPEGIGKLINMKHLLNRG  128 (418)
Q Consensus       109 ~~----~~~~l~~l~~L~~L~l~~  128 (418)
                      ..    +..++..-..|++|++++
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCC
Confidence            22    112233334456666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.33  E-value=0.00043  Score=57.30  Aligned_cols=112  Identities=11%  Similarity=0.088  Sum_probs=80.9

Q ss_pred             ccccceeeEEeecCCCCCCCCccHH---HHHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc-
Q 014826           14 TRRVKRMRTLLISASGSDHSSLNAE---IVEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV-   85 (418)
Q Consensus        14 ~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~-   85 (418)
                      ..+-+.|+.|+|+++.    .+++.   .+.+.+..-+.|+.|+|++|.+.+.    +.+.+..-+.|++|+|++|.++ 
T Consensus        37 l~~n~~L~~L~L~~nn----~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           37 REDDTDLKEVNINNMK----RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HTTCSSCCEEECTTCC----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HhcCCCccEEECCCCC----CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3456789999999863    25553   3567778888999999999997765    3444556688999999999987 


Q ss_pred             ----cCchhhhcCCCCcEEeccCccC--ccc-----CChhhhccccccEEeccCC
Q 014826           86 ----KLPETLCELYNLEKLDISYCFN--LKE-----LPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        86 ----~l~~~~~~l~~L~~L~l~~~~~--~~~-----~~~~l~~l~~L~~L~l~~~  129 (418)
                          .+.+.+..-..|+.|+|+++..  ++.     +...+..-++|+.|+++.+
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence                3445666778899999986532  221     2334555678888888766

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.53  E-value=0.22  Score=38.01  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=27.2

Q ss_pred             eeeeCCCCCc--cCchhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCC
Q 014826           76 YLNLRFPKIV--KLPETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGT  129 (418)
Q Consensus        76 ~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~  129 (418)
                      .++.++..++  .+|..+  -.+|+.|+|++|. +..++. .+..+++|+.|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence            4455555555  555332  2346666666666 444433 3455666666666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=90.36  E-value=0.29  Score=37.25  Aligned_cols=56  Identities=18%  Similarity=0.079  Sum_probs=36.1

Q ss_pred             EEecCCCCCc-HHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcc
Q 014826           52 ALDVSQVSLP-TEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLK  109 (418)
Q Consensus        52 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~  109 (418)
                      +++.++..+. ..+|..+  -++|++|+|++|.++.++ ..+..+++|+.|+|.+|.+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            5555555532 1344221  135888888888888777 456778888888888887443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	418
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 67  NIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN 126
                  L  LN+   K+++LP        LE+L  S+  +L E+PE    L      L+
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFN-HLAEVPELPQNLKQ----LH 330

Query: 127 RGTNSLRYMPVGIGRLTGLR 146
              N LR  P     +  LR
Sbjct: 331 VEYNPLREFPDIPESVEDLR 350

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 32/237 (13%), Positives = 68/237 (28%), Gaps = 16/237 (6%)

Query: 58  VSLPTEI--LRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGI 115
           ++ PT I  +     L +   +      +     T  +L  +  L       +  + EG+
Sbjct: 3   ITQPTAINVIFPDPALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGT-GVTTI-EGV 59

Query: 116 GKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH 175
             L N+  L     N +  +          + L +           +    +  L++++ 
Sbjct: 60  QYLNNLIGL-ELKDNQITDLAPL-------KNLTKITELELSGNPLKNVSAIAGLQSIKT 111

Query: 176 LQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRP 235
           L +   +        G +    L                               L  L  
Sbjct: 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLAN 171

Query: 236 PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFIS 292
              L  L+   N+ + + P  + SL NL  + L        + PL    +L  + ++
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT 225

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 244 IQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFIS 292
           ++ NR     P  +T L  L SL +S    C ++P  G L   +    +
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 32/202 (15%), Positives = 60/202 (29%), Gaps = 20/202 (9%)

Query: 236 PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSLEQLFISYM 294
           P D   L++Q N+   +      +L NL +L L   +  +  P     L  LE+L++S  
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 295 S-SVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLR------------------IEGL 335
                         E   H++  + +    F  L  +                    +G+
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 336 MELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLG 395
            +L       T        + P L+ L +D     K     +     L +L +       
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 396 ERYRTGEGEDWPNISHIPNIHI 417
               +          H+ N  +
Sbjct: 210 VDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 44/250 (17%), Positives = 89/250 (35%), Gaps = 12/250 (4%)

Query: 38  EIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNL 97
           EI +  F+   +L  L +    +          LV L  L L   ++ +LPE +     L
Sbjct: 45  EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 102

Query: 98  EKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGG 157
           ++L +     + ++ + +   +N   ++  GTN L+   +  G   G++ L   R++   
Sbjct: 103 QELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DT 160

Query: 158 DVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEG 217
           ++         SL  L HL    I ++   S  G     +L                   
Sbjct: 161 NITTIPQGLPPSLTEL-HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 218 GERRKNEDDQLLLEALRPPLD---LKELEIQFNRGNTVFPSWMT---SLTNLKSL-GLSL 270
             R  + ++  L++      D   ++ + +  N  + +  +        T   S  G+SL
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

Query: 271 CENCEQLPPL 280
             N  Q   +
Sbjct: 280 FSNPVQYWEI 289

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 47  STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYC 105
                 LD+    +      + K L +L  L L   KI K+ P     L  LE+L +S  
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 106 FNLKELPEGIGKLINMKHLLNRGTNSLRY 134
             LKELPE + K +    +       +R 
Sbjct: 90  -QLKELPEKMPKTLQELRVHENEITKVRK 117

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 50  LRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLK 109
           L  L +   ++       +  L  L+ L     K+  +   L  L N+  L   +   + 
Sbjct: 309 LTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHN-QIS 364

Query: 110 ELPEGIGKLINMKHL 124
           +L   +  L  +  L
Sbjct: 365 DLTP-LANLTRITQL 378

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 34  SLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKI--VKLPETL 91
           +L+ ++   L  +   + A    +  +   +  +      +++++L    I    L   L
Sbjct: 11  NLHPDVTGRLLSQG--VIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGIL 67

Query: 92  CELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMP 136
            +   L+ L +        +   + K  N+  L   G +      
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 60  LPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELP 112
           LP ++            L++   +I  LP     L NL+KL     +NLK+LP
Sbjct: 192 LPNDVFHG---ASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	418
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.62
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.35
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.16
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.78
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.76
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.69

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=6.1e-22  Score=179.34  Aligned_cols=251  Identities=20%  Similarity=0.221  Sum_probs=194.4

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCC-CCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCC
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQ-VSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYN   96 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~   96 (418)
                      +++.|+|+++.+  .....  +|..+.++++|++|++++ +.+.+.+|..++++++|++|++++|.+..+ +..+..+.+
T Consensus        51 ~v~~L~L~~~~l--~g~~~--lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNL--PKPYP--IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCC--SSCEE--CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCC--CCCCC--CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            699999999872  12112  556699999999999986 677778999999999999999999998754 566888999


Q ss_pred             CcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccccccccc-ceecceeecCCCCCCCccccccccccCCcc
Q 014826           97 LEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGL-RTLGEFRVSAGGDVDGRKACRLESLKNLEH  175 (418)
Q Consensus        97 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  175 (418)
                      |+++++++|.....+|..++++++|+.+++++|...+.+|..+..+..+ +.+.+..+...       ......+..+..
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~-------~~~~~~~~~l~~  199 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-------GKIPPTFANLNL  199 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-------EECCGGGGGCCC
T ss_pred             hcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc-------cccccccccccc
Confidence            9999999999888899999999999999999998888899988888776 66766655443       112223333332


Q ss_pred             cccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCch
Q 014826          176 LQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS  255 (418)
Q Consensus       176 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  255 (418)
                      .. ++......    ...........++++.+++..+...            ..+..+..+++|+.|++++|.+.+.+|.
T Consensus       200 ~~-l~l~~~~~----~~~~~~~~~~~~~l~~l~~~~~~l~------------~~~~~~~~~~~L~~L~Ls~N~l~g~iP~  262 (313)
T d1ogqa_         200 AF-VDLSRNML----EGDASVLFGSDKNTQKIHLAKNSLA------------FDLGKVGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             SE-EECCSSEE----EECCGGGCCTTSCCSEEECCSSEEC------------CBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred             cc-cccccccc----ccccccccccccccccccccccccc------------ccccccccccccccccCccCeecccCCh
Confidence            22 22221111    0111224556789999999888643            1234577789999999999988889999


Q ss_pred             hhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccc
Q 014826          256 WMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSV  297 (418)
Q Consensus       256 ~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  297 (418)
                      +++.+++|+.|+|++|.+++.+|.++.+++|+.+++.+|+.+
T Consensus       263 ~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             HHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence            999999999999999999988898889999999999999754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=4.7e-20  Score=171.52  Aligned_cols=303  Identities=18%  Similarity=0.213  Sum_probs=163.2

Q ss_pred             cccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcC
Q 014826           15 RRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCEL   94 (418)
Q Consensus        15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l   94 (418)
                      +.+.+|++|+++++.     +++  +. .+..+++|++|++++|++.+ ++ .++++++|++|++++|.+..++. +..+
T Consensus        41 ~~l~~l~~L~l~~~~-----I~~--l~-gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~~-l~~l  109 (384)
T d2omza2          41 TDLDQVTTLQADRLG-----IKS--ID-GVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADITP-LANL  109 (384)
T ss_dssp             HHHTTCCEEECCSSC-----CCC--CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred             HHhCCCCEEECCCCC-----CCC--cc-ccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccccc-cccc
Confidence            456678888888776     333  22 26677888888888887443 33 37778888888888888777653 6677


Q ss_pred             CCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCC-------------------cccccccccceecceeecC
Q 014826           95 YNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMP-------------------VGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus        95 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-------------------~~l~~l~~L~~L~l~~~~~  155 (418)
                      ++|+.|++.++.. ..++. ......+..+....+......+                   ..+.............+. 
T Consensus       110 ~~L~~L~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  186 (384)
T d2omza2         110 TNLTGLTLFNNQI-TDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-  186 (384)
T ss_dssp             TTCCEEECCSSCC-CCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-
T ss_pred             ccccccccccccc-ccccc-ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc-
Confidence            8888888877763 32222 2223333333333221100000                   000000000000000000 


Q ss_pred             CCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCC
Q 014826          156 GGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRP  235 (418)
Q Consensus       156 ~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (418)
                              .........++.+..+...... +...     .....+++|+++++.++....             ...+..
T Consensus       187 --------~~~~~~~~~l~~~~~l~l~~n~-i~~~-----~~~~~~~~L~~L~l~~n~l~~-------------~~~l~~  239 (384)
T d2omza2         187 --------VSDISVLAKLTNLESLIATNNQ-ISDI-----TPLGILTNLDELSLNGNQLKD-------------IGTLAS  239 (384)
T ss_dssp             --------CCCCGGGGGCTTCSEEECCSSC-CCCC-----GGGGGCTTCCEEECCSSCCCC-------------CGGGGG
T ss_pred             --------cccccccccccccceeeccCCc-cCCC-----CcccccCCCCEEECCCCCCCC-------------cchhhc
Confidence                    1111222333344443333221 1110     012345678888887776431             234456


Q ss_pred             CCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCC
Q 014826          236 PLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSS  315 (418)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  315 (418)
                      +++|+.+++++|.+.+..  .+..+++|+.|+++++... .++.+..++.++.+.+..|. +..+..             
T Consensus       240 l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~l~~l~~~~n~-l~~~~~-------------  302 (384)
T d2omza2         240 LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQ-LEDISP-------------  302 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC-CSCCGG-------------
T ss_pred             ccccchhccccCccCCCC--cccccccCCEeeccCcccC-CCCccccccccccccccccc-cccccc-------------
Confidence            678888888887554332  3667788888888877655 33445566667777776665 322211             


Q ss_pred             CCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCC
Q 014826          316 SSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCG  392 (418)
Q Consensus       316 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~  392 (418)
                           ...+++++.++++++ +++++.. .        ..+++|++|++++| .+++++. +..+++|++|++++|+
T Consensus       303 -----~~~~~~l~~L~ls~n-~l~~l~~-l--------~~l~~L~~L~L~~n-~l~~l~~-l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         303 -----ISNLKNLTYLTLYFN-NISDISP-V--------SSLTKLQRLFFANN-KVSDVSS-LANLTNINWLSAGHNQ  362 (384)
T ss_dssp             -----GGGCTTCSEEECCSS-CCSCCGG-G--------GGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             -----cchhcccCeEECCCC-CCCCCcc-c--------ccCCCCCEEECCCC-CCCCChh-HcCCCCCCEEECCCCc
Confidence                 335666667766663 4554431 1        25677777777776 5666553 5556777777776665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=1.2e-19  Score=163.98  Aligned_cols=249  Identities=17%  Similarity=0.133  Sum_probs=173.4

Q ss_pred             CCccEEecCCCCCcH--HHHHhhccccccceeeeCC-CCCc-cCchhhhcCCCCcEEeccCccCcccCChhhhccccccE
Q 014826           48 TSLRALDVSQVSLPT--EILRNIKKLVHLRYLNLRF-PKIV-KLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKH  123 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  123 (418)
                      .+++.|+|+++.+.+  .+|..++++++|++|++++ |.+. .+|..+.++++|++|++++|.+.+..+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368999999987655  4778899999999999986 5655 89999999999999999999977777777889999999


Q ss_pred             EeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccc-cccccc--ccCCCcchhhhhhhhcCC
Q 014826          124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHL-QVCGIR--RLGDVSDVGEAKRLELDK  200 (418)
Q Consensus       124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L-~~l~~~--~~~~~~~~~~~~~~~l~~  200 (418)
                      ++++.|.....+|..+.+++.++++++.++....       .....+..+..+ +.+...  ...+...      ..+..
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~-------~ip~~~~~l~~l~~~l~~~~n~l~~~~~------~~~~~  196 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-------AIPDSYGSFSKLFTSMTISRNRLTGKIP------PTFAN  196 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-------ECCGGGGCCCTTCCEEECCSSEEEEECC------GGGGG
T ss_pred             cccccccccccCchhhccCcccceeecccccccc-------cccccccccccccccccccccccccccc------ccccc
Confidence            9999998888899999999999999988776541       122223333332 222221  1111110      11111


Q ss_pred             cccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-
Q 014826          201 KKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-  279 (418)
Q Consensus       201 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-  279 (418)
                      . ....+++..+.           .....+..+..+++++.++++.+.+.... ..++.+++|+.|++++|.+.+.+|. 
T Consensus       197 l-~~~~l~l~~~~-----------~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~  263 (313)
T d1ogqa_         197 L-NLAFVDLSRNM-----------LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             C-CCSEEECCSSE-----------EEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred             c-ccccccccccc-----------ccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChH
Confidence            2 23345555443           22334555667788888888888665444 3567788888888888888877775 


Q ss_pred             CCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCccccccccccccccc
Q 014826          280 LGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEE  340 (418)
Q Consensus       280 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  340 (418)
                      ++.+++|+.|+|++|...+.+|.                  ...+++|+.+++.+.+.+..
T Consensus       264 l~~L~~L~~L~Ls~N~l~g~iP~------------------~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNNLCGEIPQ------------------GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCC------------------STTGGGSCGGGTCSSSEEES
T ss_pred             HhCCCCCCEEECcCCcccccCCC------------------cccCCCCCHHHhCCCccccC
Confidence            77888888888888873334542                  23567777777776544433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1.8e-18  Score=155.64  Aligned_cols=230  Identities=18%  Similarity=0.163  Sum_probs=107.4

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC-chhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL-PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN  126 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  126 (418)
                      +++++|++++|++....+..|.++++|++|+++++.+..+ |..+..+++|++|++++|+ +..+|..+  ...++.|.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~--~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC--CTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccch--hhhhhhhhc
Confidence            3455555555553221122355555555555555555544 2345555555555555555 44444321  234555555


Q ss_pred             cCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccc
Q 014826          127 RGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSC  206 (418)
Q Consensus       127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~  206 (418)
                      .++......+..+.....+..+....+....     .......+..++.|+.+++...... ..+      ....++|+.
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-----~~~~~~~~~~l~~L~~l~l~~n~l~-~l~------~~~~~~L~~  175 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKS-----SGIENGAFQGMKKLSYIRIADTNIT-TIP------QGLPPSLTE  175 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----GGBCTTGGGGCTTCCEEECCSSCCC-SCC------SSCCTTCSE
T ss_pred             cccchhhhhhhhhhccccccccccccccccc-----cCCCccccccccccCccccccCCcc-ccC------cccCCccCE
Confidence            5553322222223333333333332222110     1111122233333333332221110 000      011345666


Q ss_pred             eEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCcc
Q 014826          207 LRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSL  286 (418)
Q Consensus       207 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L  286 (418)
                      |++.++...           ......+..++.++.|++++|.+....+.++..+++|+.|++++|.+......+..+++|
T Consensus       176 L~l~~n~~~-----------~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L  244 (305)
T d1xkua_         176 LHLDGNKIT-----------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI  244 (305)
T ss_dssp             EECTTSCCC-----------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred             EECCCCcCC-----------CCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCC
Confidence            666655421           122344555666667776666555555556666667777777776555332336666677


Q ss_pred             chhcccccccceeccccc
Q 014826          287 EQLFISYMSSVKRVGDEF  304 (418)
Q Consensus       287 ~~L~L~~~~~~~~~~~~~  304 (418)
                      +.|++++|+ +++++...
T Consensus       245 ~~L~Ls~N~-i~~i~~~~  261 (305)
T d1xkua_         245 QVVYLHNNN-ISAIGSND  261 (305)
T ss_dssp             CEEECCSSC-CCCCCTTS
T ss_pred             CEEECCCCc-cCccChhh
Confidence            777776665 55555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=7e-18  Score=156.63  Aligned_cols=288  Identities=19%  Similarity=0.235  Sum_probs=188.2

Q ss_pred             ccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEE
Q 014826           45 RESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHL  124 (418)
Q Consensus        45 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  124 (418)
                      ..+.+|++|+++++.+. .+ +++.++++|++|++++|.++.++. +.++++|++|++++|. +..+++ ++++++|+.|
T Consensus        41 ~~l~~l~~L~l~~~~I~-~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~~-l~~l~~L~~L  115 (384)
T d2omza2          41 TDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGL  115 (384)
T ss_dssp             HHHTTCCEEECCSSCCC-CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred             HHhCCCCEEECCCCCCC-Cc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccc-cccccc-cccccccccc
Confidence            34567999999999854 33 468899999999999999999875 8899999999999998 455554 8899999999


Q ss_pred             eccCCcccccCCcccccccccceecceeecCCCCCC------Cccc------cccccccCCcccccccccccCCCcchhh
Q 014826          125 LNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVD------GRKA------CRLESLKNLEHLQVCGIRRLGDVSDVGE  192 (418)
Q Consensus       125 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------~~~~------~~~~~l~~L~~L~~l~~~~~~~~~~~~~  192 (418)
                      +++++...+. +. ......+.......+.......      ....      .....+...+...........      .
T Consensus       116 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  187 (384)
T d2omza2         116 TLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK------V  187 (384)
T ss_dssp             ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC------C
T ss_pred             cccccccccc-cc-ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc------c
Confidence            9988844332 21 1122233333222221110000      0000      000111111111111111000      0


Q ss_pred             hhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCC
Q 014826          193 AKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCE  272 (418)
Q Consensus       193 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  272 (418)
                      ........+++++.+.+..+....             ......+++|+++++++|.+.+ + ..+..+++|+.|++.+|.
T Consensus       188 ~~~~~~~~l~~~~~l~l~~n~i~~-------------~~~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~  252 (384)
T d2omza2         188 SDISVLAKLTNLESLIATNNQISD-------------ITPLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQ  252 (384)
T ss_dssp             CCCGGGGGCTTCSEEECCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC
T ss_pred             ccccccccccccceeeccCCccCC-------------CCcccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCc
Confidence            111234456788999998876531             1123446889999999996543 3 467889999999999997


Q ss_pred             CCCCCCCCCCCCccchhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcc
Q 014826          273 NCEQLPPLGKLPSLEQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTV  352 (418)
Q Consensus       273 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~  352 (418)
                      +. .++.+..+++|+.|+++++. +..++.                  ...++.++.+.+.++ .++.+..         
T Consensus       253 l~-~~~~~~~~~~L~~L~l~~~~-l~~~~~------------------~~~~~~l~~l~~~~n-~l~~~~~---------  302 (384)
T d2omza2         253 IS-NLAPLSGLTKLTELKLGANQ-ISNISP------------------LAGLTALTNLELNEN-QLEDISP---------  302 (384)
T ss_dssp             CC-CCGGGTTCTTCSEEECCSSC-CCCCGG------------------GTTCTTCSEEECCSS-CCSCCGG---------
T ss_pred             cC-CCCcccccccCCEeeccCcc-cCCCCc------------------ccccccccccccccc-ccccccc---------
Confidence            65 45568889999999999887 433322                  346677888877763 3444332         


Q ss_pred             cccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCC
Q 014826          353 INIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCG  392 (418)
Q Consensus       353 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~  392 (418)
                      +..++++++|+++++ ++++++. +..+++|++|++++|+
T Consensus       303 ~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         303 ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANNK  340 (384)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSC
T ss_pred             cchhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCCC
Confidence            236899999999999 7887764 6679999999999996

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=2.3e-17  Score=148.23  Aligned_cols=264  Identities=16%  Similarity=0.171  Sum_probs=152.8

Q ss_pred             CccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826           49 SLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR  127 (418)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  127 (418)
                      .++.++-++.. .+.+|..+.  +++++|++++|.++.+|. .+.++++|++|++++|......|..+.++++|++|+++
T Consensus        11 ~~~~~~C~~~~-L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLG-LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSC-CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCC-CCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            45556655555 334454432  567888888888777774 57777888888888877444445567778888888887


Q ss_pred             CCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccce
Q 014826          128 GTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCL  207 (418)
Q Consensus       128 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  207 (418)
                      +|. ...+|..+  ...+..|....+....                             ++.      ..+.....+..+
T Consensus        88 ~n~-l~~l~~~~--~~~l~~L~~~~n~l~~-----------------------------l~~------~~~~~~~~~~~l  129 (305)
T d1xkua_          88 KNQ-LKELPEKM--PKTLQELRVHENEITK-----------------------------VRK------SVFNGLNQMIVV  129 (305)
T ss_dssp             SSC-CSBCCSSC--CTTCCEEECCSSCCCB-----------------------------BCH------HHHTTCTTCCEE
T ss_pred             CCc-cCcCccch--hhhhhhhhccccchhh-----------------------------hhh------hhhhcccccccc
Confidence            774 34455433  2345555544333220                             000      011112233333


Q ss_pred             EeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCCcc
Q 014826          208 RLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLPSL  286 (418)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L  286 (418)
                      ....+...         ........+..+++|+.++++.|.+. .++..  .+++|+.|++.+|......+. +..++.+
T Consensus       130 ~~~~n~~~---------~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l  197 (305)
T d1xkua_         130 ELGTNPLK---------SSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNL  197 (305)
T ss_dssp             ECCSSCCC---------GGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             cccccccc---------ccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccc
Confidence            33332211         11122233445566777777766433 23322  356777777777765554443 6667777


Q ss_pred             chhcccccccceeccccccCCCCCccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEec
Q 014826          287 EQLFISYMSSVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDS  366 (418)
Q Consensus       287 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~  366 (418)
                      +.|++++|. +..++...                ...+++|++|+++++ +++.++.+..        .+++|++|++++
T Consensus       198 ~~L~~s~n~-l~~~~~~~----------------~~~l~~L~~L~L~~N-~L~~lp~~l~--------~l~~L~~L~Ls~  251 (305)
T d1xkua_         198 AKLGLSFNS-ISAVDNGS----------------LANTPHLRELHLNNN-KLVKVPGGLA--------DHKYIQVVYLHN  251 (305)
T ss_dssp             CEEECCSSC-CCEECTTT----------------GGGSTTCCEEECCSS-CCSSCCTTTT--------TCSSCCEEECCS
T ss_pred             ccccccccc-cccccccc----------------ccccccceeeecccc-cccccccccc--------cccCCCEEECCC
Confidence            777777775 55554332                346777888888775 5666654333        678888888888


Q ss_pred             CCCCCcCCc-------cccCCCCccEEEeccCC
Q 014826          367 CYELKALPD-------HIHQTTTLKRLWILNCG  392 (418)
Q Consensus       367 c~~l~~~~~-------~~~~~~~L~~L~l~~c~  392 (418)
                      | +++.++.       .....++|+.|++.+||
T Consensus       252 N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         252 N-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             S-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             C-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            7 5766643       22346778888888887

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-17  Score=148.15  Aligned_cols=65  Identities=18%  Similarity=0.060  Sum_probs=40.0

Q ss_pred             CCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCC
Q 014826          199 DKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENC  274 (418)
Q Consensus       199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  274 (418)
                      .++++|+.+.+.+|...           ...+..+..+++|++|+++.|.+....+.++..+++|+.|++++|++.
T Consensus       174 ~~l~~L~~l~l~~N~l~-----------~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccccchhhhhhcccc-----------ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            34456666666666532           222445566667777777777666555566667777777777776544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-16  Score=139.99  Aligned_cols=102  Identities=24%  Similarity=0.071  Sum_probs=54.2

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEecc
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNR  127 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  127 (418)
                      ++|++|+|++|.+.+..+..|.++++|++|++++|.++.++. +..+++|++|++++|+ +...+..+.++++|+.|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccc-cccccccccccccccccccc
Confidence            356666666665433223445566666666666666665543 3456666666666665 33444445556666666666


Q ss_pred             CCcccccCCcccccccccceecce
Q 014826          128 GTNSLRYMPVGIGRLTGLRTLGEF  151 (418)
Q Consensus       128 ~~~~~~~~~~~l~~l~~L~~L~l~  151 (418)
                      ++......+..+..+.+++.|.+.
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~  132 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLK  132 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECT
T ss_pred             ccccceeecccccccccccccccc
Confidence            554333333333444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.5e-16  Score=138.81  Aligned_cols=202  Identities=18%  Similarity=0.110  Sum_probs=139.8

Q ss_pred             CCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCCCCcEEeccCccCcccC-ChhhhccccccEEe
Q 014826           48 TSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNLEKLDISYCFNLKEL-PEGIGKLINMKHLL  125 (418)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~  125 (418)
                      +.+++|+|++|.+.+.-+..|.++++|++|+++.+.+..++ ..+..+..++.+....+.....+ +..++++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            45677777777754333345677777777777777766554 34455677777766555445555 34567777777777


Q ss_pred             ccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCccccc
Q 014826          126 NRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS  205 (418)
Q Consensus       126 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~  205 (418)
                      +++|......+..+..+.+|+.+++..+....                             ++      ...+..+++|+
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~-----------------------------i~------~~~f~~~~~L~  156 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----------------------------LP------DDTFRDLGNLT  156 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------------CC------TTTTTTCTTCC
T ss_pred             cCCcccccccccccchhcccchhhhccccccc-----------------------------cC------hhHhccccchh
Confidence            77775544444555566677777665554320                             00      01233456788


Q ss_pred             ceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCC-CCCCC
Q 014826          206 CLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPP-LGKLP  284 (418)
Q Consensus       206 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~l~  284 (418)
                      .|++.+|...           ......+..+++|++++++.|.+....|.++..+++|+.|++++|.+....+. +..++
T Consensus       157 ~L~l~~N~l~-----------~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         157 HLFLHGNRIS-----------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             EEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             hcccccCccc-----------ccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccc
Confidence            8888877642           22235667889999999999988877889999999999999999988765544 78899


Q ss_pred             ccchhcccccc
Q 014826          285 SLEQLFISYMS  295 (418)
Q Consensus       285 ~L~~L~L~~~~  295 (418)
                      +|+.|++++|+
T Consensus       226 ~L~~L~l~~N~  236 (284)
T d1ozna_         226 ALQYLRLNDNP  236 (284)
T ss_dssp             TCCEEECCSSC
T ss_pred             ccCEEEecCCC
Confidence            99999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.4e-16  Score=136.17  Aligned_cols=136  Identities=20%  Similarity=0.143  Sum_probs=105.1

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .+||..+.  +++++|+|++|.     ++. +.+..|.++++|++|++++|.+. .++ .++.+++|++|++++|.+..+
T Consensus        23 ~~iP~~lp--~~l~~L~Ls~N~-----i~~-l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~~~   92 (266)
T d1p9ag_          23 TALPPDLP--KDTTILHLSENL-----LYT-FSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQSL   92 (266)
T ss_dssp             SSCCSCCC--TTCCEEECTTSC-----CSE-EEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCSSC
T ss_pred             CeeCcCcC--cCCCEEECcCCc-----CCC-cCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccccc
Confidence            35777665  489999999998     554 22355899999999999999854 343 357899999999999999988


Q ss_pred             chhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceee
Q 014826           88 PETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRV  153 (418)
Q Consensus        88 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  153 (418)
                      +..+..+++|++|+++++......+..+..+.++++|.+++|.+....+..+..+++++.+++.++
T Consensus        93 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence            888999999999999999855545566788999999999999554433444455666666655444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.60  E-value=1.8e-14  Score=131.45  Aligned_cols=298  Identities=19%  Similarity=0.119  Sum_probs=148.0

Q ss_pred             eeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCc
Q 014826           19 RMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLE   98 (418)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~   98 (418)
                      +++.|+|+++.     ++.  +|+   ..++|++|++++|.+. .+|+.   ..+|+.|+++++.++.++..   .+.|+
T Consensus        39 ~l~~LdLs~~~-----L~~--lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~  101 (353)
T d1jl5a_          39 QAHELELNNLG-----LSS--LPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSDL---PPLLE  101 (353)
T ss_dssp             TCSEEECTTSC-----CSC--CCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCSC---CTTCC
T ss_pred             CCCEEEeCCCC-----CCC--CCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhhh---ccccc
Confidence            56777777776     343  332   2356777777777633 44432   34677777777776655432   13577


Q ss_pred             EEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCccccc
Q 014826           99 KLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQV  178 (418)
Q Consensus        99 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~  178 (418)
                      +|++++|. +..+|. ++.+++|++|+++++.. ...+...   ..+..+.+......         ....+..++.++.
T Consensus       102 ~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~~-~~~~~~~---~~l~~l~~~~~~~~---------~~~~l~~l~~l~~  166 (353)
T d1jl5a_         102 YLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQLE---------ELPELQNLPFLTA  166 (353)
T ss_dssp             EEECCSSC-CSSCCC-CTTCTTCCEEECCSSCC-SCCCCCC---TTCCEEECCSSCCS---------SCCCCTTCTTCCE
T ss_pred             cccccccc-cccccc-hhhhccceeeccccccc-ccccccc---ccccchhhcccccc---------cccccccccccee
Confidence            77777776 555654 56677777777776632 2233222   22333333222211         1122223333333


Q ss_pred             ccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhh
Q 014826          179 CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMT  258 (418)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  258 (418)
                      +..........        .......+.+.......             ........++.|+.++++.+.. ...+.   
T Consensus       167 L~l~~n~~~~~--------~~~~~~~~~l~~~~~~~-------------~~~~~~~~l~~L~~l~l~~n~~-~~~~~---  221 (353)
T d1jl5a_         167 IYADNNSLKKL--------PDLPLSLESIVAGNNIL-------------EELPELQNLPFLTTIYADNNLL-KTLPD---  221 (353)
T ss_dssp             EECCSSCCSSC--------CCCCTTCCEEECCSSCC-------------SSCCCCTTCTTCCEEECCSSCC-SSCCS---
T ss_pred             ccccccccccc--------ccccccccccccccccc-------------cccccccccccccccccccccc-ccccc---
Confidence            33222111000        00001112222222111             0122344567788888877733 22332   


Q ss_pred             cCCCccEEEeeCCCCCCCCCCCCCCCccchhcccccc--cceeccccccCCCCCccCCCCCccccccCCccccccccccc
Q 014826          259 SLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFISYMS--SVKRVGDEFLGVESDRHDSSSSSLVIIAFPKLKSLRIEGLM  336 (418)
Q Consensus       259 ~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  336 (418)
                      ...++..+.+..+.........   +.+...++..+.  .+...+..........   .........+++|++|++++| 
T Consensus       222 ~~~~l~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~L~~L~Ls~N-  294 (353)
T d1jl5a_         222 LPPSLEALNVRDNYLTDLPELP---QSLTFLDVSENIFSGLSELPPNLYYLNASS---NEIRSLCDLPPSLEELNVSNN-  294 (353)
T ss_dssp             CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSEESCCCTTCCEEECCS---SCCSEECCCCTTCCEEECCSS-
T ss_pred             cccccccccccccccccccccc---ccccccccccccccccccccchhccccccc---CccccccccCCCCCEEECCCC-
Confidence            3456777777777554332211   222222222221  0111111000000000   000001234689999999986 


Q ss_pred             ccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEeccCCchhc
Q 014826          337 ELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWILNCGPLGE  396 (418)
Q Consensus       337 ~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~  396 (418)
                      +++.++   .        .+++|++|++++| .++++|..   +++|++|++++|+ +..
T Consensus       295 ~l~~lp---~--------~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~~  338 (353)
T d1jl5a_         295 KLIELP---A--------LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LRE  338 (353)
T ss_dssp             CCSCCC---C--------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSS
T ss_pred             ccCccc---c--------ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CCC
Confidence            566654   1        4789999999988 68888864   6789999999998 443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.8e-16  Score=139.25  Aligned_cols=62  Identities=18%  Similarity=0.136  Sum_probs=33.9

Q ss_pred             CCCCcEEEEeeec--CCCC-CchhhhcCCCccEEEeeCCCCCC--CCCCCCCCCccchhcccccccc
Q 014826          236 PLDLKELEIQFNR--GNTV-FPSWMTSLTNLKSLGLSLCENCE--QLPPLGKLPSLEQLFISYMSSV  297 (418)
Q Consensus       236 ~~~L~~L~l~~~~--~~~~-~~~~l~~~~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~  297 (418)
                      +++|+.|+++++.  +.+. +......+++|++|++++|...+  .+..+..+++|++|++++|..+
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence            5678888887652  2222 22222467777777777765332  1222455566666666665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.7e-15  Score=131.91  Aligned_cols=199  Identities=19%  Similarity=0.184  Sum_probs=132.5

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC-Cc--cCchhhh
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK-IV--KLPETLC   92 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~--~l~~~~~   92 (418)
                      ...+|++|+++++.     +++..+..++..|++|++|+++++.+.+..+..+.++++|++|++++|. ++  .+.....
T Consensus        44 ~~~~L~~LdLs~~~-----i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~  118 (284)
T d2astb2          44 SPFRVQHMDLSNSV-----IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS  118 (284)
T ss_dssp             CCBCCCEEECTTCE-----ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             cCCCCCEEECCCCc-----cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhH
Confidence            55689999999887     7777788889999999999999998777777788889999999999875 65  2344556


Q ss_pred             cCCCCcEEeccCccCccc--CChhhhc-cccccEEeccCCcc--cc-cCCcccccccccceecceeecCCCCCCCccccc
Q 014826           93 ELYNLEKLDISYCFNLKE--LPEGIGK-LINMKHLLNRGTNS--LR-YMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR  166 (418)
Q Consensus        93 ~l~~L~~L~l~~~~~~~~--~~~~l~~-l~~L~~L~l~~~~~--~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  166 (418)
                      .+++|++|++++|....+  +...++. +++|+.|+++++..  .. .+......+++|++|++.++...      ....
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i------td~~  192 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML------KNDC  192 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC------CGGG
T ss_pred             HHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC------Cchh
Confidence            789999999999864432  2233443 47899999987621  11 12333456778888877655432      1112


Q ss_pred             cccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826          167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF  246 (418)
Q Consensus       167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (418)
                      +.                            .+..+++|++|++++|..          ..+.....+..+++|++|++++
T Consensus       193 ~~----------------------------~l~~~~~L~~L~L~~C~~----------i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         193 FQ----------------------------EFFQLNYLQHLSLSRCYD----------IIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             GG----------------------------GGGGCTTCCEEECTTCTT----------CCGGGGGGGGGCTTCCEEECTT
T ss_pred             hh----------------------------hhcccCcCCEEECCCCCC----------CChHHHHHHhcCCCCCEEeeeC
Confidence            22                            233456677777766532          1122334456678888888887


Q ss_pred             ecCCCCCchhh-hcCCCcc
Q 014826          247 NRGNTVFPSWM-TSLTNLK  264 (418)
Q Consensus       247 ~~~~~~~~~~l-~~~~~L~  264 (418)
                      + ..+.....+ ..+|+|+
T Consensus       235 ~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         235 I-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             S-SCTTCHHHHHHHSTTSE
T ss_pred             C-CCHHHHHHHHHhCcccc
Confidence            7 444433333 3577765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.1e-16  Score=147.08  Aligned_cols=109  Identities=17%  Similarity=0.183  Sum_probs=80.3

Q ss_pred             ceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCccC-----c
Q 014826           18 KRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIVKL-----P   88 (418)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~l-----~   88 (418)
                      ++|++||++.++     +++..+.+.+..++++++|+|++|.+...    +...+..+++|++|++++|.++..     .
T Consensus         2 ~~l~~ld~~~~~-----i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~   76 (460)
T d1z7xw1           2 LDIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEEESCC-----CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCCEEEeeCCc-----CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH
Confidence            478899998887     77777788888889999999999886543    455567888899999998887632     2


Q ss_pred             hhhh-cCCCCcEEeccCccCccc----CChhhhccccccEEeccCCcc
Q 014826           89 ETLC-ELYNLEKLDISYCFNLKE----LPEGIGKLINMKHLLNRGTNS  131 (418)
Q Consensus        89 ~~~~-~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~  131 (418)
                      ..+. ...+|++|++++|.+...    ++..+..+++|++|++++|.+
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            2222 235799999998884332    344566788899999988754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.51  E-value=3.5e-13  Score=122.65  Aligned_cols=284  Identities=22%  Similarity=0.221  Sum_probs=166.7

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhcccc-ccceeeeCCCCCcc
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLV-HLRYLNLRFPKIVK   86 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~   86 (418)
                      .++|+.   .++|++|++++|.     ++.  +|+   ...+|+.|+++++.+. .    +..++ .|++|++++|.+..
T Consensus        51 ~~lp~~---~~~L~~L~Ls~N~-----l~~--lp~---~~~~L~~L~l~~n~l~-~----l~~lp~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          51 SSLPEL---PPHLESLVASCNS-----LTE--LPE---LPQSLKSLLVDNNNLK-A----LSDLPPLLEYLGVSNNQLEK  112 (353)
T ss_dssp             SCCCSC---CTTCSEEECCSSC-----CSS--CCC---CCTTCCEEECCSSCCS-C----CCSCCTTCCEEECCSSCCSS
T ss_pred             CCCCCC---CCCCCEEECCCCC-----Ccc--ccc---chhhhhhhhhhhcccc-h----hhhhcccccccccccccccc
Confidence            356653   4689999999998     554  443   3468999999998743 2    33343 69999999999999


Q ss_pred             CchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccc
Q 014826           87 LPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACR  166 (418)
Q Consensus        87 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  166 (418)
                      +|. +..+++|+.|+++++. ....+..   ...+..+.+..+..  ..+..+..++.++.+.+..+.....        
T Consensus       113 lp~-~~~l~~L~~L~l~~~~-~~~~~~~---~~~l~~l~~~~~~~--~~~~~l~~l~~l~~L~l~~n~~~~~--------  177 (353)
T d1jl5a_         113 LPE-LQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKL--------  177 (353)
T ss_dssp             CCC-CTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC--SSCCCCTTCTTCCEEECCSSCCSSC--------
T ss_pred             ccc-hhhhccceeecccccc-ccccccc---cccccchhhccccc--cccccccccccceeccccccccccc--------
Confidence            985 5789999999999987 4444432   34566666655522  2234456677777777665543310        


Q ss_pred             cccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826          167 LESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF  246 (418)
Q Consensus       167 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (418)
                      .........+. ........++        ....++.++.+.+.++...               .......++..+.+..
T Consensus       178 ~~~~~~~~~l~-~~~~~~~~~~--------~~~~l~~L~~l~l~~n~~~---------------~~~~~~~~l~~~~~~~  233 (353)
T d1jl5a_         178 PDLPLSLESIV-AGNNILEELP--------ELQNLPFLTTIYADNNLLK---------------TLPDLPPSLEALNVRD  233 (353)
T ss_dssp             CCCCTTCCEEE-CCSSCCSSCC--------CCTTCTTCCEEECCSSCCS---------------SCCSCCTTCCEEECCS
T ss_pred             ccccccccccc-cccccccccc--------ccccccccccccccccccc---------------cccccccccccccccc
Confidence            00000000000 0000011111        1234566777777665432               1112234455555555


Q ss_pred             ecCCCCCchhhhcCCCccEEEeeCCCCCC----------------CCCC-CCCCCccchhcccccccceeccccccCCCC
Q 014826          247 NRGNTVFPSWMTSLTNLKSLGLSLCENCE----------------QLPP-LGKLPSLEQLFISYMSSVKRVGDEFLGVES  309 (418)
Q Consensus       247 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----------------~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~  309 (418)
                      +..... +.   ...+++...+..+....                .+.. ...+++|++|++++|. ++.++        
T Consensus       234 ~~~~~~-~~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~lp--------  300 (353)
T d1jl5a_         234 NYLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP--------  300 (353)
T ss_dssp             SCCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCC--------
T ss_pred             cccccc-cc---ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCc-cCccc--------
Confidence            433221 11   12223333332221110                1111 2346899999999997 65554        


Q ss_pred             CccCCCCCccccccCCcccccccccccccccccccccccCCcccccCCCccEEEEecCCCCCcCCccccCCCCccEEEec
Q 014826          310 DRHDSSSSSLVIIAFPKLKSLRIEGLMELEEWDYGITRTGNTVINIMPHLSSLVIDSCYELKALPDHIHQTTTLKRLWIL  389 (418)
Q Consensus       310 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~  389 (418)
                                  ..+++|+.|+++++ +++.++.           .+++|++|++++|+ ++++|..   +.+|+.|.+.
T Consensus       301 ------------~~~~~L~~L~L~~N-~L~~l~~-----------~~~~L~~L~L~~N~-L~~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         301 ------------ALPPRLERLIASFN-HLAEVPE-----------LPQNLKQLHVEYNP-LREFPDI---PESVEDLRMN  352 (353)
T ss_dssp             ------------CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSSC-CSSCCCC---CTTCCEEECC
T ss_pred             ------------cccCCCCEEECCCC-cCCcccc-----------ccCCCCEEECcCCc-CCCCCcc---ccccCeeECc
Confidence                        24689999999885 5776651           35789999999994 8999875   6678888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=2.4e-14  Score=122.33  Aligned_cols=188  Identities=16%  Similarity=0.217  Sum_probs=115.2

Q ss_pred             EecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCccc
Q 014826           53 LDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSL  132 (418)
Q Consensus        53 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  132 (418)
                      +++..+++.+..  ...++.+|++|++.+|.++.++ .+..+++|++|++++|. +..+++ +.++++|+.+++++|.. 
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~~-   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL-   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCce-eecccc-ccccccccccccccccc-
Confidence            455555533321  2466788999999999888884 57889999999999987 444443 78888999999988743 


Q ss_pred             ccCCcccccccccceecceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecc
Q 014826          133 RYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFD  212 (418)
Q Consensus       133 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  212 (418)
                      ..++ .+.++++|+.+++.++...         ....+.                            ..+.++.+.+..+
T Consensus        98 ~~i~-~l~~l~~L~~l~l~~~~~~---------~~~~~~----------------------------~~~~~~~l~~~~~  139 (227)
T d1h6ua2          98 KNVS-AIAGLQSIKTLDLTSTQIT---------DVTPLA----------------------------GLSNLQVLYLDLN  139 (227)
T ss_dssp             SCCG-GGTTCTTCCEEECTTSCCC---------CCGGGT----------------------------TCTTCCEEECCSS
T ss_pred             cccc-ccccccccccccccccccc---------ccchhc----------------------------cccchhhhhchhh
Confidence            3333 4667788888776554332         111111                            1233444444433


Q ss_pred             cccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhccc
Q 014826          213 KKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFIS  292 (418)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~  292 (418)
                      ...             ....+..+++|++|++++|...+.  ..+..+++|+.|++++|.+. .++.++.+++|++|+++
T Consensus       140 ~~~-------------~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~-~l~~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         140 QIT-------------NISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLK  203 (227)
T ss_dssp             CCC-------------CCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECT
T ss_pred             hhc-------------hhhhhccccccccccccccccccc--hhhcccccceecccCCCccC-CChhhcCCCCCCEEECc
Confidence            321             011233456677777766644322  23566777777777777544 45556677777777777


Q ss_pred             ccccceecc
Q 014826          293 YMSSVKRVG  301 (418)
Q Consensus       293 ~~~~~~~~~  301 (418)
                      +|+ ++.++
T Consensus       204 ~N~-lt~i~  211 (227)
T d1h6ua2         204 NNQ-ISDVS  211 (227)
T ss_dssp             TSC-CCBCG
T ss_pred             CCc-CCCCc
Confidence            775 55443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=1e-13  Score=118.28  Aligned_cols=209  Identities=19%  Similarity=0.171  Sum_probs=145.4

Q ss_pred             ccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCC
Q 014826           16 RVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELY   95 (418)
Q Consensus        16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~   95 (418)
                      .++++..+++..+.     +++  .. .+..+.+|+.|++.++.+. .+ +.+.++++|++|++++|.+..++. +..++
T Consensus        17 ~l~~~~~~~l~~~~-----~~d--~~-~~~~l~~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~   85 (227)
T d1h6ua2          17 ALANAIKIAAGKSN-----VTD--TV-TQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQITDLAP-LKNLT   85 (227)
T ss_dssp             HHHHHHHHHTTCSS-----TTS--EE-CHHHHHTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCC
T ss_pred             HHHHHHHHHhCCCC-----cCC--cC-CHHHcCCcCEEECCCCCCC-cc-hhHhcCCCCcEeecCCceeecccc-ccccc
Confidence            33444455565555     333  11 1456678999999999854 44 468999999999999999988754 88999


Q ss_pred             CCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceecceeecCCCCCCCccccccccccCCcc
Q 014826           96 NLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAGGDVDGRKACRLESLKNLEH  175 (418)
Q Consensus        96 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  175 (418)
                      +|+++++++|. .+.++ +++++++|+.+.++++.....  ..+...+.+..+.+..+...         ...       
T Consensus        86 ~l~~l~~~~n~-~~~i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---------~~~-------  145 (227)
T d1h6ua2          86 KITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT---------NIS-------  145 (227)
T ss_dssp             SCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCC---------CCG-------
T ss_pred             ccccccccccc-ccccc-ccccccccccccccccccccc--chhccccchhhhhchhhhhc---------hhh-------
Confidence            99999999997 55665 488999999999998844322  23445566666654333221         000       


Q ss_pred             cccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEeeecCCCCCch
Q 014826          176 LQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQFNRGNTVFPS  255 (418)
Q Consensus       176 L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  255 (418)
                                           .+..+++|+.+++.++....             ...+..+++|+.|++++|.+.+ ++ 
T Consensus       146 ---------------------~~~~~~~L~~L~l~~n~~~~-------------~~~l~~l~~L~~L~Ls~n~l~~-l~-  189 (227)
T d1h6ua2         146 ---------------------PLAGLTNLQYLSIGNAQVSD-------------LTPLANLSKLTTLKADDNKISD-IS-  189 (227)
T ss_dssp             ---------------------GGGGCTTCCEEECCSSCCCC-------------CGGGTTCTTCCEEECCSSCCCC-CG-
T ss_pred             ---------------------hhcccccccccccccccccc-------------chhhcccccceecccCCCccCC-Ch-
Confidence                                 12234677777777765421             2235678889999999886543 43 


Q ss_pred             hhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhccc
Q 014826          256 WMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFIS  292 (418)
Q Consensus       256 ~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~  292 (418)
                      .++.+++|+.|++++|.++ .++.++.+++|+.|+++
T Consensus       190 ~l~~l~~L~~L~Ls~N~lt-~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             GGGGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEE
T ss_pred             hhcCCCCCCEEECcCCcCC-CCcccccCCCCCEEEee
Confidence            3778899999999999655 56668888999988876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=4.4e-13  Score=111.79  Aligned_cols=102  Identities=15%  Similarity=0.195  Sum_probs=68.2

Q ss_pred             cCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEe
Q 014826           46 ESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLL  125 (418)
Q Consensus        46 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  125 (418)
                      .+.++++|+++++.+. .+ +.+.++++|++|++++|.++.++. +.++++|++|++++|. ...++. ++++++|+.|+
T Consensus        38 ~l~~l~~L~l~~~~i~-~l-~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCC-Cc-cccccCCCcCcCccccccccCccc-ccCCcccccccccccc-cccccc-ccccccccccc
Confidence            4566777888777643 22 246777888888888877777654 6777888888888776 444543 77778888888


Q ss_pred             ccCCcccccCCcccccccccceecceeec
Q 014826          126 NRGTNSLRYMPVGIGRLTGLRTLGEFRVS  154 (418)
Q Consensus       126 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  154 (418)
                      ++++....  ...+..+++|+.+++.++.
T Consensus       113 l~~~~~~~--~~~~~~l~~L~~L~l~~n~  139 (199)
T d2omxa2         113 LFNNQITD--IDPLKNLTNLNRLELSSNT  139 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSC
T ss_pred             cccccccc--ccccchhhhhHHhhhhhhh
Confidence            87774332  2335566777777665443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=2.5e-13  Score=114.30  Aligned_cols=101  Identities=20%  Similarity=0.166  Sum_probs=70.9

Q ss_pred             CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEec
Q 014826           47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLN  126 (418)
Q Consensus        47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  126 (418)
                      +..|+.|+++++.+.+ ++ .+.++++|++|++++|.++.++. +..+++|++|++++|. +..++ .+..+++|+.|++
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccc-ccccc-ccccccccccccc
Confidence            4567888888887443 22 46778888888888888887764 5678888888888887 55565 4777888888888


Q ss_pred             cCCcccccCCcccccccccceecceeec
Q 014826          127 RGTNSLRYMPVGIGRLTGLRTLGEFRVS  154 (418)
Q Consensus       127 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~  154 (418)
                      ++|... .+ ..+..+++++.+++..+.
T Consensus       120 ~~~~~~-~~-~~l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2         120 EHNGIS-DI-NGLVHLPQLESLYLGNNK  145 (210)
T ss_dssp             TTSCCC-CC-GGGGGCTTCCEEECCSSC
T ss_pred             cccccc-cc-cccccccccccccccccc
Confidence            887432 22 346667777777665443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=3.2e-13  Score=112.66  Aligned_cols=163  Identities=21%  Similarity=0.253  Sum_probs=103.5

Q ss_pred             ccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCccccccccccee
Q 014826           69 KKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTL  148 (418)
Q Consensus        69 ~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  148 (418)
                      .++.++++|+++++.+..+. .+..+++|++|++++|. +..+++ ++++++|++|++++|.. ..++ .+.+++.|+.+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCCCCcc-ccccCCCcCcCcccccc-ccCccc-ccCCccccccccccccc-cccc-ccccccccccc
Confidence            45778889999998888774 47788899999999887 555554 88888999999988843 3333 36777888887


Q ss_pred             cceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhh
Q 014826          149 GEFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQL  228 (418)
Q Consensus       149 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  228 (418)
                      ++.++....         ...                            +..+++|+.+++++|...             
T Consensus       112 ~l~~~~~~~---------~~~----------------------------~~~l~~L~~L~l~~n~l~-------------  141 (199)
T d2omxa2         112 TLFNNQITD---------IDP----------------------------LKNLTNLNRLELSSNTIS-------------  141 (199)
T ss_dssp             ECCSSCCCC---------CGG----------------------------GTTCTTCSEEECCSSCCC-------------
T ss_pred             ccccccccc---------ccc----------------------------cchhhhhHHhhhhhhhhc-------------
Confidence            776554330         111                            223345566666555432             


Q ss_pred             hhhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchh
Q 014826          229 LLEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQL  289 (418)
Q Consensus       229 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L  289 (418)
                      ....+..+++|++|++.+|.+.+ ++ .++.+++|+.|++++|.+. .++.++.+++|+.|
T Consensus       142 ~~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~~l~~L~~L~~L  199 (199)
T d2omxa2         142 DISALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS-DISVLAKLTNLESL  199 (199)
T ss_dssp             CCGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEE
T ss_pred             ccccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC-CCccccCCCCCCcC
Confidence            12234556677777777764433 22 3566777777777777544 34445556665543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=1.9e-13  Score=114.98  Aligned_cols=165  Identities=21%  Similarity=0.207  Sum_probs=108.5

Q ss_pred             cccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCcccccCCcccccccccceec
Q 014826           70 KLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLG  149 (418)
Q Consensus        70 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  149 (418)
                      .+.+|++|+++++.++.++ .+..+++|++|++++|. +..+++ ++.+++|+.|++++|.+ ..++ .+..+++|+.++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~-~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcc-ccCccc-cccCccccccccccccc-cccc-cccccccccccc
Confidence            4678999999999988876 47789999999999998 555664 78899999999999854 4454 477888888888


Q ss_pred             ceeecCCCCCCCccccccccccCCcccccccccccCCCcchhhhhhhhcCCcccccceEeecccccCCCCCccccchhhh
Q 014826          150 EFRVSAGGDVDGRKACRLESLKNLEHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLL  229 (418)
Q Consensus       150 l~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  229 (418)
                      +.++...         .+..+..+                            +.++.+++.++....             
T Consensus       119 l~~~~~~---------~~~~l~~l----------------------------~~l~~l~~~~n~l~~-------------  148 (210)
T d1h6ta2         119 LEHNGIS---------DINGLVHL----------------------------PQLESLYLGNNKITD-------------  148 (210)
T ss_dssp             CTTSCCC---------CCGGGGGC----------------------------TTCCEEECCSSCCCC-------------
T ss_pred             ccccccc---------cccccccc----------------------------ccccccccccccccc-------------
Confidence            7666543         11222233                            344444444443210             


Q ss_pred             hhhCCCCCCCcEEEEeeecCCCCCchhhhcCCCccEEEeeCCCCCCCCCCCCCCCccchhccc
Q 014826          230 LEALRPPLDLKELEIQFNRGNTVFPSWMTSLTNLKSLGLSLCENCEQLPPLGKLPSLEQLFIS  292 (418)
Q Consensus       230 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~  292 (418)
                      ......+++|+++++++|.+.+ ++ .+..+++|+.|++++|.+. .++.+..+++|+.|+|+
T Consensus       149 ~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         149 ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEE
T ss_pred             cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEcc
Confidence            1123345667777777665432 22 2566777777777777554 45556667777777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.1e-13  Score=109.36  Aligned_cols=128  Identities=19%  Similarity=0.148  Sum_probs=99.0

Q ss_pred             cccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchh-h
Q 014826           13 STRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPET-L   91 (418)
Q Consensus        13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~   91 (418)
                      .|.++.++|+|+|++|+     ++.  ++..+..+++|++|++++|.+. .+ +.+..+++|++|++++|.++.++.. +
T Consensus        13 ~~~n~~~lr~L~L~~n~-----I~~--i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~   83 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYK-----IPV--IENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLD   83 (162)
T ss_dssp             EEECTTSCEEEECTTSC-----CCS--CCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             hccCcCcCcEEECCCCC-----CCc--cCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCcccc
Confidence            46788899999999998     554  4455678899999999999854 33 3578899999999999999988754 5


Q ss_pred             hcCCCCcEEeccCccCcccCC--hhhhccccccEEeccCCcccccCC----cccccccccceecce
Q 014826           92 CELYNLEKLDISYCFNLKELP--EGIGKLINMKHLLNRGTNSLRYMP----VGIGRLTGLRTLGEF  151 (418)
Q Consensus        92 ~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~  151 (418)
                      ..+++|+.|++++|. +..++  ..++.+++|++|++++|... ..|    ..+..+++|+.|+-.
T Consensus        84 ~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          84 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccccceecccc-ccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCCC
Confidence            679999999999998 44444  35788999999999998543 333    246678888888643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=4.8e-13  Score=102.07  Aligned_cols=101  Identities=16%  Similarity=0.152  Sum_probs=70.1

Q ss_pred             eEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEE
Q 014826           21 RTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKL  100 (418)
Q Consensus        21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L  100 (418)
                      |+|+|++|.     ++.  ++. +..+++|++|++++|.+ ..+|..+..+++|++|++++|.++.+|. +..+++|+.|
T Consensus         1 R~L~Ls~n~-----l~~--l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKD-----LTV--LCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDG-VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSC-----CSS--CCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred             CEEEcCCCC-----CCC--Ccc-cccCCCCCEEECCCCcc-CcchhhhhhhhcccccccccccccccCc-cccccccCeE
Confidence            567777777     443  333 67777788888887774 3556667777888888888887777754 6777788888


Q ss_pred             eccCccCcccCC--hhhhccccccEEeccCCccc
Q 014826          101 DISYCFNLKELP--EGIGKLINMKHLLNRGTNSL  132 (418)
Q Consensus       101 ~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~  132 (418)
                      ++++|+ +..++  ..++++++|+.|++++|.+.
T Consensus        71 ~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCc-cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            888777 44443  34677777888888777543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-14  Score=137.12  Aligned_cols=92  Identities=17%  Similarity=0.205  Sum_probs=70.7

Q ss_pred             CccccccceeeEEeecCCCCCCCCccHH---HHHHHhccCCCccEEecCCCCCcHHH----HHhhc-cccccceeeeCCC
Q 014826           11 PVSTRRVKRMRTLLISASGSDHSSLNAE---IVEELFRESTSLRALDVSQVSLPTEI----LRNIK-KLVHLRYLNLRFP   82 (418)
Q Consensus        11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~-~l~~L~~L~l~~~   82 (418)
                      ...++.++++++|+|++|.     +++.   .+...+..+++|++|+|++|.+.+..    ...+. ...+|++|++++|
T Consensus        20 ~~l~~~l~~l~~L~L~~~~-----i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n   94 (460)
T d1z7xw1          20 AELLPLLQQCQVVRLDDCG-----LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC   94 (460)
T ss_dssp             HHHHHHHTTCSEEEEESSC-----CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred             HHHHHhCCCCCEEEeCCCC-----CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC
Confidence            4456788999999999998     5553   35666789999999999999965432    22232 2357999999999


Q ss_pred             CCcc-----CchhhhcCCCCcEEeccCccC
Q 014826           83 KIVK-----LPETLCELYNLEKLDISYCFN  107 (418)
Q Consensus        83 ~l~~-----l~~~~~~l~~L~~L~l~~~~~  107 (418)
                      .++.     ++..+..+++|++|++++|.+
T Consensus        95 ~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          95 CLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             CCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             Cccccccccccchhhccccccccccccccc
Confidence            9873     345677899999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=112.24  Aligned_cols=77  Identities=18%  Similarity=0.107  Sum_probs=47.4

Q ss_pred             cccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEE-eeecCCCCCch-hhhcCCCccEEEeeCCCCCCCCCC-
Q 014826          203 YLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEI-QFNRGNTVFPS-WMTSLTNLKSLGLSLCENCEQLPP-  279 (418)
Q Consensus       203 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~-  279 (418)
                      .++.+++..+...            .+........++.++.. ++| ....+|. .+.++++|+.|++++|.+.. +|. 
T Consensus       154 ~l~~L~l~~n~l~------------~i~~~~~~~~~l~~~~~l~~n-~l~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~  219 (242)
T d1xwdc1         154 ESVILWLNKNGIQ------------EIHNCAFNGTQLDELNLSDNN-NLEELPNDVFHGASGPVILDISRTRIHS-LPSY  219 (242)
T ss_dssp             SCEEEECCSSCCC------------EECTTTTTTCCEEEEECTTCT-TCCCCCTTTTTTSCCCSEEECTTSCCCC-CCSS
T ss_pred             cceeeeccccccc------------ccccccccchhhhcccccccc-ccccccHHHhcCCCCCCEEECCCCcCCc-cCHH
Confidence            5666676665532            12222333455555544 444 3344544 46789999999999998764 433 


Q ss_pred             -CCCCCccchhcccc
Q 014826          280 -LGKLPSLEQLFISY  293 (418)
Q Consensus       280 -l~~l~~L~~L~L~~  293 (418)
                       +..+++|+.+++..
T Consensus       220 ~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         220 GLENLKKLRARSTYN  234 (242)
T ss_dssp             SCTTCCEEESSSEES
T ss_pred             HHcCCcccccCcCCC
Confidence             77788888877765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.31  E-value=1.3e-12  Score=118.73  Aligned_cols=141  Identities=11%  Similarity=0.035  Sum_probs=83.5

Q ss_pred             CCccccccceeeEEeecCCCCCCCCccHHH---HHHHhccCCCccEEecCCCCCc----------HHHHHhhccccccce
Q 014826           10 LPVSTRRVKRMRTLLISASGSDHSSLNAEI---VEELFRESTSLRALDVSQVSLP----------TEILRNIKKLVHLRY   76 (418)
Q Consensus        10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~----------~~~~~~~~~l~~L~~   76 (418)
                      +...+.....|+.|+|++|.     +++..   +...+...+.|+.|+++++...          ..+...+..+++|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~-----i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~   97 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNT-----IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   97 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSE-----ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHhhCCCCCEEECcCCc-----CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccc
Confidence            45556677788888888876     54433   4445666778888888765321          113344566778888


Q ss_pred             eeeCCCCCcc-----CchhhhcCCCCcEEeccCccCcccCC----hh---------hhccccccEEeccCCccccc----
Q 014826           77 LNLRFPKIVK-----LPETLCELYNLEKLDISYCFNLKELP----EG---------IGKLINMKHLLNRGTNSLRY----  134 (418)
Q Consensus        77 L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~----~~---------l~~l~~L~~L~l~~~~~~~~----  134 (418)
                      |++++|.++.     +...+..+++|+.|++++|.+.....    ..         ....+.|+.+.++++.+...    
T Consensus        98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1          98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence            8888877653     33445567788888888776322111    11         12346677777776643321    


Q ss_pred             CCcccccccccceecceeecC
Q 014826          135 MPVGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus       135 ~~~~l~~l~~L~~L~l~~~~~  155 (418)
                      +...+..++.|+.|++..+..
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i  198 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGI  198 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCC
T ss_pred             ccchhhhhhhhcccccccccc
Confidence            223344556666666655543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.1e-12  Score=107.04  Aligned_cols=101  Identities=19%  Similarity=0.169  Sum_probs=52.5

Q ss_pred             cEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCch-hhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccC
Q 014826           51 RALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRG  128 (418)
Q Consensus        51 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~  128 (418)
                      ++++.++.. .+.+|..+  .+++++|++++|.++.+|. .|.++++|++|++++|.....++. .+.++++++++.+..
T Consensus        11 ~~i~c~~~~-l~~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESK-VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCS-CSSCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCC-CCCcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            445555444 22333322  1356666666666666553 355666666666666654443332 355566666666544


Q ss_pred             Cc-ccccCCcccccccccceecceeec
Q 014826          129 TN-SLRYMPVGIGRLTGLRTLGEFRVS  154 (418)
Q Consensus       129 ~~-~~~~~~~~l~~l~~L~~L~l~~~~  154 (418)
                      ++ .....+..+..+++|+++++..+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             cccccccccccccccccccccccchhh
Confidence            32 223333445566666666655443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=3e-12  Score=97.52  Aligned_cols=102  Identities=22%  Similarity=0.231  Sum_probs=84.6

Q ss_pred             cEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCc
Q 014826           51 RALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTN  130 (418)
Q Consensus        51 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  130 (418)
                      |+|+++++.+. .++ .+.++++|++|++++|.++.+|..+..+++|+.|++++|. +..+| +++++++|++|++++|.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc
Confidence            68999999854 444 4788999999999999999999889999999999999998 66676 48999999999999995


Q ss_pred             ccccC-CcccccccccceecceeecCC
Q 014826          131 SLRYM-PVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       131 ~~~~~-~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      +.... ...+..+++|+++++.+|...
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54321 246788999999999877653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=3.5e-12  Score=105.54  Aligned_cols=127  Identities=17%  Similarity=0.116  Sum_probs=75.2

Q ss_pred             eeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHH-HHhhccccccceeeeCCCCCccCc-hhhhcCCCC
Q 014826           20 MRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEI-LRNIKKLVHLRYLNLRFPKIVKLP-ETLCELYNL   97 (418)
Q Consensus        20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L   97 (418)
                      .++++.++++     ++.  +|..+  .+++++|+|++|++.+.+ +..|.++++|++|++++|.+..++ ..+..+++|
T Consensus        10 ~~~v~Cs~~~-----L~~--iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L   80 (192)
T d1w8aa_          10 GTTVDCTGRG-----LKE--IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TTEEECTTSC-----CSS--CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCEEEEeCCC-----cCc--cCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc
Confidence            3456666665     333  23211  246677777777654322 334566777777777777666443 455667777


Q ss_pred             cEEeccCccCcccC-ChhhhccccccEEeccCCcccccCCcccccccccceecceeecCC
Q 014826           98 EKLDISYCFNLKEL-PEGIGKLINMKHLLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus        98 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      ++|++++|+ +..+ +..+.++++|++|++++|.+....+..+..+++|+++++.++...
T Consensus        81 ~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          81 QELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ceeeecccc-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            777777776 3333 334666777777777777554444455666777777776665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=3.5e-12  Score=115.80  Aligned_cols=246  Identities=16%  Similarity=0.051  Sum_probs=158.5

Q ss_pred             HHHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCcc-----------CchhhhcCCCCcEEeccC
Q 014826           40 VEELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIVK-----------LPETLCELYNLEKLDISY  104 (418)
Q Consensus        40 ~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~-----------l~~~~~~l~~L~~L~l~~  104 (418)
                      +...+.....|++|+|++|.+...    +...+...++|+.|+++++....           +...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344577899999999999986554    34456778999999999876432           223456789999999999


Q ss_pred             ccCccc----CChhhhccccccEEeccCCcccccCC----cc---------cccccccceecceeecCCCCCCCcccccc
Q 014826          105 CFNLKE----LPEGIGKLINMKHLLNRGTNSLRYMP----VG---------IGRLTGLRTLGEFRVSAGGDVDGRKACRL  167 (418)
Q Consensus       105 ~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~---------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  167 (418)
                      |.+...    +...+..+++|++|++++|.+.....    ..         ....+.|+.+.+..+.....   ......
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~---~~~~l~  179 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---SMKEWA  179 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---GHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccc---cccccc
Confidence            985443    33445678999999999985432211    11         12456778887766544311   011222


Q ss_pred             ccccCCcccccccccccCCCcc-hhhhhhhhcCCcccccceEeecccccCCCCCccccchhhhhhhCCCCCCCcEEEEee
Q 014826          168 ESLKNLEHLQVCGIRRLGDVSD-VGEAKRLELDKKKYLSCLRLRFDKKKEGGERRKNEDDQLLLEALRPPLDLKELEIQF  246 (418)
Q Consensus       168 ~~l~~L~~L~~l~~~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (418)
                      ..++..+.++.+++........ ........+..+++|+.|++++|....       .....+...+..+++|++|++++
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~-------~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-------LGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-------HHHHHHHHHGGGCTTCCEEECTT
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccc-------cccccccccccccccchhhhhhc
Confidence            2344556666766655432211 112233456778899999999886420       01233456677889999999999


Q ss_pred             ecCCCCCchhh----h--cCCCccEEEeeCCCCCCCCC----C-C-CCCCccchhcccccc
Q 014826          247 NRGNTVFPSWM----T--SLTNLKSLGLSLCENCEQLP----P-L-GKLPSLEQLFISYMS  295 (418)
Q Consensus       247 ~~~~~~~~~~l----~--~~~~L~~L~l~~~~~~~~~~----~-l-~~l~~L~~L~L~~~~  295 (418)
                      |.+.+.....+    .  ..+.|++|++++|.+...-.    . + .++++|+.|++++|.
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            97765533333    2  35679999999997543211    1 2 257889999999887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=1.7e-13  Score=113.97  Aligned_cols=109  Identities=23%  Similarity=0.228  Sum_probs=60.8

Q ss_pred             HHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhcccc
Q 014826           41 EELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLIN  120 (418)
Q Consensus        41 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  120 (418)
                      +..+..+++|++|++++|.+. .++ .+..+++|++|++++|.++.+|.....+++|+.|++++|. +..++ .+..+++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~~l~~  116 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVN  116 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHH-HHHHHHH
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccccccccccccccccccccccc-ccccc-ccccccc
Confidence            334556666666666666532 332 3555666666666666666665544445566666666665 33333 3555666


Q ss_pred             ccEEeccCCcccccCC--cccccccccceecceeec
Q 014826          121 MKHLLNRGTNSLRYMP--VGIGRLTGLRTLGEFRVS  154 (418)
Q Consensus       121 L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~  154 (418)
                      |+.|++++|.+ ..++  ..+..+++|+.|++.+|.
T Consensus       117 L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         117 LRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccchh-ccccccccccCCCccceeecCCCc
Confidence            66666666633 2222  235566666666665553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=1.3e-11  Score=102.08  Aligned_cols=118  Identities=17%  Similarity=0.156  Sum_probs=91.4

Q ss_pred             CCCCccccccceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccC
Q 014826            8 ASLPVSTRRVKRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKL   87 (418)
Q Consensus         8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l   87 (418)
                      .++|..+.  +++++|+|++|.     ++.......|..+++|+.|+++++.+....+..+..+++|++|++++|.+..+
T Consensus        21 ~~iP~~lp--~~l~~L~Ls~N~-----i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l   93 (192)
T d1w8aa_          21 KEIPRDIP--LHTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI   93 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred             CccCCCCC--CCCCEEEeCCCC-----CcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc
Confidence            35776664  589999999998     33211234478899999999999987666667788899999999999998877


Q ss_pred             c-hhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCCccc
Q 014826           88 P-ETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNSL  132 (418)
Q Consensus        88 ~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  132 (418)
                      + ..|.++++|++|+|++|.+..--+..+..+++|++|++++|...
T Consensus        94 ~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            6 46788999999999999844433456788999999999988543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.9e-11  Score=96.68  Aligned_cols=108  Identities=19%  Similarity=0.180  Sum_probs=73.0

Q ss_pred             hccCCCccEEecCCCCCcHHHHHhhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChh-hhcccccc
Q 014826           44 FRESTSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEG-IGKLINMK  122 (418)
Q Consensus        44 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~  122 (418)
                      +.++..+|+|+|++|.+. .++..+..+++|++|++++|.+..++ .+..+++|++|++++|. +..++.. +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            456677888888888743 34444566778888888888877774 46677888888888887 4445433 45678888


Q ss_pred             EEeccCCcccccCC--cccccccccceecceeecC
Q 014826          123 HLLNRGTNSLRYMP--VGIGRLTGLRTLGEFRVSA  155 (418)
Q Consensus       123 ~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~  155 (418)
                      +|++++|.+. .++  ..+..+++|+++++.+|..
T Consensus        91 ~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          91 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cceecccccc-ccccccccccccccchhhcCCCcc
Confidence            8888877443 222  3456677777777766654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.88  E-value=1.8e-10  Score=95.27  Aligned_cols=61  Identities=18%  Similarity=0.179  Sum_probs=26.8

Q ss_pred             hhccccccceeeeCCCCCccCchhhhcCCCCcEEeccCccCcccCChhhhccccccEEeccCC
Q 014826           67 NIKKLVHLRYLNLRFPKIVKLPETLCELYNLEKLDISYCFNLKELPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        67 ~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  129 (418)
                      .+..+++|++|++++|.++.++ .+..+++|++|++++|. +..++.....+++|+.|++++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEE
T ss_pred             HHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-cccccccccccccccccccccc
Confidence            3444444444444444444443 24444444444444444 3333333333334444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.3e-09  Score=84.69  Aligned_cols=106  Identities=17%  Similarity=0.178  Sum_probs=74.9

Q ss_pred             ceeeEEeecCCCCCCCCccHHHHHHHhccCCCccEEecCCCC-CcHHHHHhhccccccceeeeCCCCCccCc-hhhhcCC
Q 014826           18 KRMRTLLISASGSDHSSLNAEIVEELFRESTSLRALDVSQVS-LPTEILRNIKKLVHLRYLNLRFPKIVKLP-ETLCELY   95 (418)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~   95 (418)
                      ....+++.+++.     +.+  .+..+..+++|++|++++++ +...-+..|.++++|++|++++|.+..++ ..|..++
T Consensus         8 ~~~~~l~c~~~~-----~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3           8 HGSSGLRCTRDG-----ALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             SSSSCEECCSSC-----CCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CCCCeEEecCCC-----Ccc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccc
Confidence            344556666665     333  45557778888888887664 33333456788888888888888888774 5677888


Q ss_pred             CCcEEeccCccCcccCChhhhccccccEEeccCCcc
Q 014826           96 NLEKLDISYCFNLKELPEGIGKLINMKHLLNRGTNS  131 (418)
Q Consensus        96 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  131 (418)
                      +|++|+|++|+ +..+|.......+|++|++++|.+
T Consensus        81 ~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          81 RLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cccceeccCCC-CcccChhhhccccccccccCCCcc
Confidence            88888888888 566766555555788888888754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.5e-09  Score=83.02  Aligned_cols=107  Identities=14%  Similarity=0.044  Sum_probs=74.3

Q ss_pred             CCCccEEecCCCCCcHHHHHhhccccccceeeeCCCC-CccCc-hhhhcCCCCcEEeccCccCcccC-ChhhhccccccE
Q 014826           47 STSLRALDVSQVSLPTEILRNIKKLVHLRYLNLRFPK-IVKLP-ETLCELYNLEKLDISYCFNLKEL-PEGIGKLINMKH  123 (418)
Q Consensus        47 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~-~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~  123 (418)
                      +...+.++.+++. ....|..+..+++|++|+++++. ++.++ ..|.++++|+.|++++|+ +..+ +.++..+++|+.
T Consensus         7 c~~~~~l~c~~~~-~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDG-ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSC-CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCC-CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccc
Confidence            3445567777766 33455667778888888887654 77765 457788888888888887 4444 456788888888


Q ss_pred             EeccCCcccccCCcccccccccceecceeecCC
Q 014826          124 LLNRGTNSLRYMPVGIGRLTGLRTLGEFRVSAG  156 (418)
Q Consensus       124 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  156 (418)
                      |++++|.+ ..+|.......+|++|++.+|.+.
T Consensus        85 L~Ls~N~l-~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCC-SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eeccCCCC-cccChhhhccccccccccCCCccc
Confidence            88888844 455555544557888888777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.28  E-value=1.5e-06  Score=68.95  Aligned_cols=111  Identities=10%  Similarity=0.067  Sum_probs=65.0

Q ss_pred             cccceeeEEeecCCCCCCCCccHHHH---HHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCcc-
Q 014826           15 RRVKRMRTLLISASGSDHSSLNAEIV---EELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIVK-   86 (418)
Q Consensus        15 ~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~-   86 (418)
                      .+.++|+.|+|+++.    .++++.+   ...+...+.|++|++++|.+...    +...+...+.|++|++++|.++. 
T Consensus        12 ~n~~~L~~L~L~~~~----~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMK----RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             TTCSSCCEEECTTCC----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             hCCCCCcEEEeCCCC----CCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            355777888887654    3555433   33455667777888877775543    23334556677777777777652 


Q ss_pred             ----CchhhhcCCCCcEEeccCccCcc-------cCChhhhccccccEEeccCC
Q 014826           87 ----LPETLCELYNLEKLDISYCFNLK-------ELPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        87 ----l~~~~~~l~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~  129 (418)
                          +...+...+.|++|+++++....       .+...+...++|++|+++.+
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence                33445566677777777664211       12223344566666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2.1e-07  Score=73.65  Aligned_cols=85  Identities=21%  Similarity=0.128  Sum_probs=56.8

Q ss_pred             HHHhhccccccceeeeCCCCCccCc---hhhhcCCCCcEEeccCccCcccCCh-hhhccccccEEeccCCcccccCC---
Q 014826           64 ILRNIKKLVHLRYLNLRFPKIVKLP---ETLCELYNLEKLDISYCFNLKELPE-GIGKLINMKHLLNRGTNSLRYMP---  136 (418)
Q Consensus        64 ~~~~~~~l~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~---  136 (418)
                      ++.....+++|++|++++|.++.++   ..+..+++|+.|++++|. +..++. ...+..+|++|++.+|.+.....   
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            3444467888888999888877553   446678888888888888 555544 22334568888888886543322   


Q ss_pred             ----cccccccccceec
Q 014826          137 ----VGIGRLTGLRTLG  149 (418)
Q Consensus       137 ----~~l~~l~~L~~L~  149 (418)
                          ..+..+++|+.|+
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                2245667777775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.98  E-value=7.8e-06  Score=64.63  Aligned_cols=113  Identities=16%  Similarity=0.164  Sum_probs=79.4

Q ss_pred             HHHHHhccCCCccEEecCCC-CCcHH----HHHhhccccccceeeeCCCCCc-----cCchhhhcCCCCcEEeccCccCc
Q 014826           39 IVEELFRESTSLRALDVSQV-SLPTE----ILRNIKKLVHLRYLNLRFPKIV-----KLPETLCELYNLEKLDISYCFNL  108 (418)
Q Consensus        39 ~~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~  108 (418)
                      .+.....+.++|++|+|+++ .+..+    +...+...++|++|++++|.++     .+...+...+.|+.|++++|.+.
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            45666677899999999975 45443    3445677889999999999876     34456777899999999999854


Q ss_pred             cc----CChhhhccccccEEeccCCcccc-------cCCcccccccccceecce
Q 014826          109 KE----LPEGIGKLINMKHLLNRGTNSLR-------YMPVGIGRLTGLRTLGEF  151 (418)
Q Consensus       109 ~~----~~~~l~~l~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~  151 (418)
                      ..    +..++...++|++|+++++....       .+...+...+.|+.|++.
T Consensus        86 ~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~  139 (167)
T d1pgva_          86 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  139 (167)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             hHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCc
Confidence            43    23346667889999998773221       133444556667766553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=9.9e-07  Score=69.63  Aligned_cols=86  Identities=16%  Similarity=0.079  Sum_probs=65.5

Q ss_pred             HHHHhccCCCccEEecCCCCCcH--HHHHhhccccccceeeeCCCCCccCch-hhhcCCCCcEEeccCccCcccCC----
Q 014826           40 VEELFRESTSLRALDVSQVSLPT--EILRNIKKLVHLRYLNLRFPKIVKLPE-TLCELYNLEKLDISYCFNLKELP----  112 (418)
Q Consensus        40 ~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~----  112 (418)
                      +...+..++.|++|++++|++.+  .++..+..+++|++|++++|.++.+++ ......+|+.|++.+|.+.....    
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            45556789999999999998653  244556789999999999999998874 23355679999999998554433    


Q ss_pred             ---hhhhccccccEEe
Q 014826          113 ---EGIGKLINMKHLL  125 (418)
Q Consensus       113 ---~~l~~l~~L~~L~  125 (418)
                         ..+..+|+|+.|+
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               1255689999886

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.94  E-value=1.4e-05  Score=63.10  Aligned_cols=111  Identities=14%  Similarity=0.075  Sum_probs=60.9

Q ss_pred             cccceeeEEeecCCCCCCCCccHHHH---HHHhccCCCccEEecCCCCCcHH----HHHhhccccccceeeeCCCCCc--
Q 014826           15 RRVKRMRTLLISASGSDHSSLNAEIV---EELFRESTSLRALDVSQVSLPTE----ILRNIKKLVHLRYLNLRFPKIV--   85 (418)
Q Consensus        15 ~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~--   85 (418)
                      .+.++|+.|+|+++.    .+++..+   ...+...++|++|++++|.+...    +...+...+.++.++++++.++  
T Consensus        14 ~~~~~L~~L~L~~~~----~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          14 NNDPDLEEVNLNNIM----NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TTCTTCCEEECTTCT----TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             hcCCCCcEEEcCCCC----CCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            355677777777643    3555443   33344667777777777765433    2333455566777777766654  


Q ss_pred             ---cCchhhhcCCCCcEEeccCc--cCcc----cCChhhhccccccEEeccCC
Q 014826           86 ---KLPETLCELYNLEKLDISYC--FNLK----ELPEGIGKLINMKHLLNRGT  129 (418)
Q Consensus        86 ---~l~~~~~~l~~L~~L~l~~~--~~~~----~~~~~l~~l~~L~~L~l~~~  129 (418)
                         .+...+...++|+.++++.+  .+..    .+...+...++|++|+++.+
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence               23344556666666555432  2211    12233445566666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.69  E-value=2.5e-05  Score=61.50  Aligned_cols=114  Identities=13%  Similarity=0.132  Sum_probs=81.4

Q ss_pred             HHHHHhccCCCccEEecCCC-CCcHH----HHHhhccccccceeeeCCCCCc-----cCchhhhcCCCCcEEeccCccCc
Q 014826           39 IVEELFRESTSLRALDVSQV-SLPTE----ILRNIKKLVHLRYLNLRFPKIV-----KLPETLCELYNLEKLDISYCFNL  108 (418)
Q Consensus        39 ~~~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~  108 (418)
                      .+.....+.+.|++|++++. .+...    +...+...++|++|++++|.++     .+...+...+.++.+++++|...
T Consensus         8 ~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_           8 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            56776788899999999984 55443    3455667899999999999876     34456778899999999998854


Q ss_pred             cc----CChhhhccccccEEeccC--Ccccc----cCCcccccccccceeccee
Q 014826          109 KE----LPEGIGKLINMKHLLNRG--TNSLR----YMPVGIGRLTGLRTLGEFR  152 (418)
Q Consensus       109 ~~----~~~~l~~l~~L~~L~l~~--~~~~~----~~~~~l~~l~~L~~L~l~~  152 (418)
                      .+    +...+...++|+.++++.  +.+..    .+...+.+.+.|++|++..
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            33    334566778899877753  33322    2445566778888887643